AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0807100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0807100 MtrunA17_Chr5g0398281 96.508 315 11 0 1 315 1 315 0.0 624
Msa0807100 MtrunA17_Chr4g0057081 73.651 315 72 5 6 311 57 369 8.59e-158 445
Msa0807100 MtrunA17_Chr2g0328301 28.421 190 102 5 131 294 67 248 1.18e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0807100 AT4G22890.1 74.823 282 69 2 34 315 45 324 4.03e-157 442
Msa0807100 AT4G22890.3 74.823 282 69 2 34 315 45 324 4.03e-157 442
Msa0807100 AT4G22890.5 74.113 282 69 1 34 315 45 322 4.99e-157 442
Msa0807100 AT4G22890.4 74.113 282 68 1 34 315 45 321 5.04e-157 442
Msa0807100 AT4G11960.1 68.987 316 89 5 6 315 1 313 4.70e-151 426
Msa0807100 AT4G11960.2 76.494 251 59 0 65 315 46 296 1.34e-145 412
Msa0807100 AT4G22890.2 74.806 258 63 2 34 291 45 300 2.25e-142 404
Msa0807100 AT5G59400.1 30.481 187 104 4 131 294 75 258 2.66e-14 72.4
Msa0807100 AT5G59400.2 30.539 167 93 3 131 274 75 241 1.74e-11 63.9

Find 118 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATTTAGAAAATTAATTT+TGG 0.192244 5_3:-27886019 Msa0807100:five_prime_UTR
ACTGAAAACACCTCCTTCTT+TGG 0.198021 5_3:-27883425 Msa0807100:CDS
CTGCCGTTCCTTTCATTCTA+TGG 0.206904 5_3:-27883597 Msa0807100:CDS
TCTAACTGTTGACTATTTAA+AGG 0.225624 5_3:-27884376 Msa0807100:CDS
TATGTCATTCATTAGTTATT+AGG 0.244471 5_3:-27882607 Msa0807100:three_prime_UTR
ACTTCATTGCCTTTAACTAA+TGG 0.264836 5_3:+27882835 None:intergenic
CTTCTCACATTTGACTTTGT+TGG 0.266908 5_3:+27883370 None:intergenic
TGTTGATCGGAGGTGGCCTT+AGG 0.316920 5_3:+27885538 None:intergenic
CCACCGGCATTGAATTGAAT+TGG 0.333464 5_3:+27885601 None:intergenic
CCGGCAACTGTGATTGCATT+AGG 0.339486 5_3:-27884336 Msa0807100:CDS
CATTGAAGGTGAATATTGTT+TGG 0.343763 5_3:+27885789 None:intergenic
ATTAATAAAGAATATTGTAT+TGG 0.352979 5_3:+27885725 None:intergenic
TGATCCTTTCATATATATCT+TGG 0.353922 5_3:-27886054 Msa0807100:five_prime_UTR
CCTCCCCTCTTCAGCTGGCA+AGG 0.379946 5_3:-27885406 Msa0807100:intron
CCTAATGCAATCACAGTTGC+CGG 0.384531 5_3:+27884336 None:intergenic
GTGGAGAATGTTGGTCTTGA+AGG 0.390699 5_3:+27885643 None:intergenic
AGCTAGTTCTTCTAATTATG+AGG 0.392610 5_3:+27885757 None:intergenic
CCTATTTGTGCTTTCCCCTA+AGG 0.397809 5_3:-27885554 Msa0807100:CDS
TTCTTCCTTGATGATGTGAC+TGG 0.398806 5_3:-27883807 Msa0807100:CDS
CTGAAAACACCTCCTTCTTT+GGG 0.404488 5_3:-27883424 Msa0807100:CDS
AATGTCAACCATTGGAGTTA+AGG 0.405085 5_3:+27882701 None:intergenic
AAGTAGTACATTAATTATAT+AGG 0.405494 5_3:-27885995 Msa0807100:five_prime_UTR
GCATCTATTGCTTATGTGTC+TGG 0.406902 5_3:-27884964 Msa0807100:CDS
AAAATGAAACTGAATGGTTC+TGG 0.407016 5_3:+27883631 None:intergenic
AACTCTTTATCACTCATGAT+TGG 0.413038 5_3:+27884937 None:intergenic
CCTTAGGGGAAAGCACAAAT+AGG 0.420342 5_3:+27885554 None:intergenic
ACTTATGCAGTACTTCCTTC+TGG 0.426241 5_3:+27883178 None:intergenic
TGAAACAAGAGGAGAAGAAA+GGG 0.435558 5_3:-27885870 Msa0807100:five_prime_UTR
GTTGATCGGAGGTGGCCTTA+GGG 0.446924 5_3:+27885539 None:intergenic
CTCACATTTGACTTTGTTGG+TGG 0.447601 5_3:+27883373 None:intergenic
TGAATTAAAACTGAAGCTAA+AGG 0.449191 5_3:-27884911 Msa0807100:intron
GTGAAACAAGAGGAGAAGAA+AGG 0.458754 5_3:-27885871 Msa0807100:five_prime_UTR
AATAAAGAATATTGTATTGG+TGG 0.461111 5_3:+27885728 None:intergenic
CTCTTCAGCTGGCAAGGTTG+AGG 0.463924 5_3:-27885400 Msa0807100:intron
TTAAGTTATCACGTGGGCAT+AGG 0.471446 5_3:+27885967 None:intergenic
TGAATAGGCATTCTACTATG+AGG 0.480147 5_3:-27885191 Msa0807100:intron
GACTAACGTGTGGAGGGACT+TGG 0.485270 5_3:+27885834 None:intergenic
TGCTCACTCTGGAACACCAT+TGG 0.491651 5_3:-27882807 Msa0807100:three_prime_UTR
GCACAAATAGGCCTCGGCGA+AGG 0.498171 5_3:+27885566 None:intergenic
GAAGGTGAATATTGTTTGGA+GGG 0.500548 5_3:+27885793 None:intergenic
CACAAATAGGCCTCGGCGAA+GGG 0.502204 5_3:+27885567 None:intergenic
TTGACATTAATTAACATACT+TGG 0.502422 5_3:-27882686 Msa0807100:three_prime_UTR
GAATATTGTATTGGTGGTGA+TGG 0.502433 5_3:+27885734 None:intergenic
CATTAATTAACATACTTGGT+AGG 0.506378 5_3:-27882682 Msa0807100:three_prime_UTR
AAGGGATGAGTGGCGGCCAC+CGG 0.508999 5_3:+27885585 None:intergenic
TTCTACTACGAAGACTGCAC+CGG 0.512099 5_3:+27884656 None:intergenic
AGAAGGGATTAGTTCTCCAT+TGG 0.513240 5_3:-27882926 Msa0807100:three_prime_UTR
TAAGTTATCACGTGGGCATA+GGG 0.513593 5_3:+27885968 None:intergenic
AAATTGTGGCAGAGGGTCCC+CGG 0.518295 5_3:-27884675 Msa0807100:CDS
AACATCAACATCAAAATCCT+AGG 0.518444 5_3:+27885915 None:intergenic
CATATCATTATTCATGAGAA+GGG 0.525309 5_3:-27882942 Msa0807100:three_prime_UTR
TGAGGGTATTCATTCATTGA+AGG 0.525774 5_3:+27885775 None:intergenic
ATGAGGATCCTTAACTCCAA+TGG 0.529643 5_3:-27882709 Msa0807100:three_prime_UTR
AAGGACTCTAGTAGCAGAAG+TGG 0.532925 5_3:+27885624 None:intergenic
TGAAGGTGAATATTGTTTGG+AGG 0.533225 5_3:+27885792 None:intergenic
GGGAAAGCACAAATAGGCCT+CGG 0.534635 5_3:+27885560 None:intergenic
CAAGTCAAAATGAAACTGAA+TGG 0.534907 5_3:+27883625 None:intergenic
TTTGGAGGGAAACAAAGATA+AGG 0.535545 5_3:+27885807 None:intergenic
AAGACCTTGTTGATCGGAGG+TGG 0.538161 5_3:+27885531 None:intergenic
CAAAGAAAGTATTACTACCT+AGG 0.538190 5_3:-27885932 Msa0807100:five_prime_UTR
CTGAAACAAACTTGTGGAGG+TGG 0.540197 5_3:+27882635 None:intergenic
TGTTAATTAATGTCAACCAT+TGG 0.541275 5_3:+27882693 None:intergenic
AGGGAGTGAAATTGTGGCAG+AGG 0.544360 5_3:-27884683 Msa0807100:CDS
CGGCATTGAATTGAATTGGA+AGG 0.544410 5_3:+27885605 None:intergenic
GCATATCATTATTCATGAGA+AGG 0.544610 5_3:-27882943 Msa0807100:three_prime_UTR
GTAAATAGTTTCTCTACCAA+TGG 0.546890 5_3:+27882910 None:intergenic
GAATAGGCATTCTACTATGA+GGG 0.550131 5_3:-27885190 Msa0807100:intron
GGCATTCTACTATGAGGGAA+AGG 0.551864 5_3:-27885185 Msa0807100:CDS
TGACAATATAGTCCCAAAGA+AGG 0.552001 5_3:+27883412 None:intergenic
ACTATATTGTCAATTTCAAG+TGG 0.556328 5_3:-27883401 Msa0807100:CDS
CTTCCAATTCAATTCAATGC+CGG 0.558134 5_3:-27885604 Msa0807100:CDS
TGAGCAAACCATAGAATGAA+AGG 0.563526 5_3:+27883589 None:intergenic
TTGATCGGAGGTGGCCTTAG+GGG 0.563797 5_3:+27885540 None:intergenic
TGGAGAATGTTGGTCTTGAA+GGG 0.565725 5_3:+27885644 None:intergenic
ATCAAATCAAGAAATTGTCA+AGG 0.566139 5_3:-27882862 Msa0807100:three_prime_UTR
GCTAGTTCTTCTAATTATGA+GGG 0.566882 5_3:+27885758 None:intergenic
GGCGCTCCTACTGAAAGTCC+CGG 0.568811 5_3:-27884355 Msa0807100:CDS
TGAAGTCATTATGCTCACTC+TGG 0.570854 5_3:-27882818 Msa0807100:three_prime_UTR
GTGCAGTCTTCGTAGTAGAA+AGG 0.571660 5_3:-27884653 Msa0807100:intron
ATCTCAAAGAAGAACTCATG+TGG 0.574149 5_3:-27885135 Msa0807100:CDS
CAAATCCAGTCACATCATCA+AGG 0.579365 5_3:+27883802 None:intergenic
AAAGGCAACTATGTCAAATG+AGG 0.583401 5_3:-27885167 Msa0807100:CDS
TAAGATAAGACCTTGTTGAT+CGG 0.583501 5_3:+27885525 None:intergenic
GGCAATGACTAACGTGTGGA+GGG 0.585025 5_3:+27885828 None:intergenic
TCTACTACGAAGACTGCACC+GGG 0.585139 5_3:+27884657 None:intergenic
CAGTTGCCGGGACTTTCAGT+AGG 0.588097 5_3:+27884349 None:intergenic
CCAATTCAATTCAATGCCGG+TGG 0.588629 5_3:-27885601 Msa0807100:CDS
GATGGAAGGGAGTGAAATTG+TGG 0.591843 5_3:-27884689 Msa0807100:CDS
AAAGAAGAACTCATGTGGGA+AGG 0.595561 5_3:-27885130 Msa0807100:CDS
AGGAAGTACTGCATAAGTGA+AGG 0.596142 5_3:-27883173 Msa0807100:intron
CTAATGCAATCACAGTTGCC+GGG 0.598117 5_3:+27884337 None:intergenic
AGAAACTATTTACATGTGGA+AGG 0.598825 5_3:-27882900 Msa0807100:three_prime_UTR
GTAGCAGAAGTGGAGAATGT+TGG 0.602926 5_3:+27885634 None:intergenic
CTTACCAAGATATATATGAA+AGG 0.608661 5_3:+27886050 None:intergenic
TAGGGGCCATGTCCTAATTG+TGG 0.612557 5_3:-27883449 Msa0807100:CDS
AGGCAATGACTAACGTGTGG+AGG 0.617445 5_3:+27885827 None:intergenic
AGCTAGCTGAAACAAACTTG+TGG 0.618916 5_3:+27882629 None:intergenic
GGCCTCGGCGAAGGGATGAG+TGG 0.619355 5_3:+27885575 None:intergenic
GGGAGTGAAATTGTGGCAGA+GGG 0.625703 5_3:-27884682 Msa0807100:CDS
AACAAACTTGTGGAGGTGGT+AGG 0.630843 5_3:+27882639 None:intergenic
GTAGAGAAACTATTTACATG+TGG 0.633798 5_3:-27882904 Msa0807100:three_prime_UTR
GTTATCACGTGGGCATAGGG+TGG 0.634616 5_3:+27885971 None:intergenic
TAGCTGAAACAAACTTGTGG+AGG 0.634851 5_3:+27882632 None:intergenic
TCAGTACCACAATTAGGACA+TGG 0.636619 5_3:+27883443 None:intergenic
CAATATAGTCCCAAAGAAGG+AGG 0.636916 5_3:+27883415 None:intergenic
TCTCAAAGAAGAACTCATGT+GGG 0.638689 5_3:-27885134 Msa0807100:CDS
AGATTGATTACATTGCCAGA+AGG 0.638843 5_3:-27883193 Msa0807100:CDS
CTCGGCGAAGGGATGAGTGG+CGG 0.641648 5_3:+27885578 None:intergenic
GTATACACATATCAAGCCAA+TGG 0.641751 5_3:+27882791 None:intergenic
ATAACACACTCTCTCTAACA+TGG 0.645208 5_3:+27886076 None:intergenic
GATAAGACCTTGTTGATCGG+AGG 0.647194 5_3:+27885528 None:intergenic
ACGTGATAACTTAAAACATG+AGG 0.649341 5_3:-27885958 Msa0807100:five_prime_UTR
AAACCATAGAATGAAAGGAA+CGG 0.657593 5_3:+27883594 None:intergenic
CGCCACTCATCCCTTCGCCG+AGG 0.657673 5_3:-27885577 Msa0807100:CDS
ATAAGGCAATGACTAACGTG+TGG 0.667599 5_3:+27885824 None:intergenic
AAGGCCACCTCCGATCAACA+AGG 0.675926 5_3:-27885535 Msa0807100:intron
TGAGATCAACTATCTGATAG+CGG 0.690835 5_3:-27883781 Msa0807100:intron
CTACTACGAAGACTGCACCG+GGG 0.817900 5_3:+27884658 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATAAAGAATATTGTAT+TGG + chr5_3:27882909-27882928 None:intergenic 10.0%
!!! CTTTATATAATTTTGAAATA+TGG - chr5_3:27883828-27883847 Msa0807100:intron 10.0%
!!! AGATAGTTATTTTTAATTAT+AGG - chr5_3:27885163-27885182 Msa0807100:CDS 10.0%
!!! GATAGTTATTTTTAATTATA+GGG - chr5_3:27885164-27885183 Msa0807100:CDS 10.0%
!!! ATAGTTATTTTTAATTATAG+GGG - chr5_3:27885165-27885184 Msa0807100:CDS 10.0%
!! AATCAAATTAATATGATATA+TGG - chr5_3:27885345-27885364 Msa0807100:CDS 10.0%
!! AAGTAGTACATTAATTATAT+AGG - chr5_3:27882636-27882655 Msa0807100:three_prime_UTR 15.0%
!! TTCTGTTTATTATATTGAAT+AGG - chr5_3:27883425-27883444 Msa0807100:CDS 15.0%
!! CATAAAAGACATTAAATAAA+AGG - chr5_3:27884049-27884068 Msa0807100:intron 15.0%
!!! GTTTCTATTTTTACTTTAAT+CGG + chr5_3:27884618-27884637 None:intergenic 15.0%
!!! AATATATTTTACAGTATTCA+AGG + chr5_3:27885494-27885513 None:intergenic 15.0%
!! AATAAAGAATATTGTATTGG+TGG + chr5_3:27882906-27882925 None:intergenic 20.0%
!! TTATGACATTAACAATCTTT+AGG - chr5_3:27883131-27883150 Msa0807100:intron 20.0%
!! ATACTATTTGTTTCATTCAT+TGG - chr5_3:27883185-27883204 Msa0807100:CDS 20.0%
!! AATACATGAGTTTACAATAT+TGG - chr5_3:27883606-27883625 Msa0807100:CDS 20.0%
!!! ACTAATTAATACCCTTTTAT+AGG - chr5_3:27884222-27884241 Msa0807100:intron 20.0%
!!! AAAAGATTTCTTGATTTTGA+AGG - chr5_3:27885086-27885105 Msa0807100:intron 20.0%
!!! TTTTTGTAATTTATCTCTGT+TGG - chr5_3:27885114-27885133 Msa0807100:CDS 20.0%
!! ATGACTTAATAATGTACAAA+AGG + chr5_3:27885298-27885317 None:intergenic 20.0%
!! TTTATATCTCTAATACATAC+AGG - chr5_3:27885666-27885685 Msa0807100:CDS 20.0%
!!! TTTTGTTTTTTTGAGTTATG+AGG - chr5_3:27885905-27885924 Msa0807100:five_prime_UTR 20.0%
!! TTGACATTAATTAACATACT+TGG - chr5_3:27885945-27885964 Msa0807100:five_prime_UTR 20.0%
!! TATGTCATTCATTAGTTATT+AGG - chr5_3:27886024-27886043 Msa0807100:five_prime_UTR 20.0%
! TGATCCTTTCATATATATCT+TGG - chr5_3:27882577-27882596 Msa0807100:three_prime_UTR 25.0%
! CTTACCAAGATATATATGAA+AGG + chr5_3:27882584-27882603 None:intergenic 25.0%
! TTTGTTGAAAACTTAGTATC+CGG + chr5_3:27883157-27883176 None:intergenic 25.0%
! ATAACATTCACTGAAGTTAT+TGG + chr5_3:27883554-27883573 None:intergenic 25.0%
! TGAATTAAAACTGAAGCTAA+AGG - chr5_3:27883720-27883739 Msa0807100:intron 25.0%
!! GGTTTGATATTTTCATTTCA+TGG - chr5_3:27883741-27883760 Msa0807100:intron 25.0%
! ATATCTAATAAGAGCTTCAT+CGG - chr5_3:27883779-27883798 Msa0807100:intron 25.0%
! AATCCATATTGAATCACAAT+TGG + chr5_3:27883901-27883920 None:intergenic 25.0%
!! TTTCTCTTTTCTTTTACAGA+TGG - chr5_3:27883924-27883943 Msa0807100:intron 25.0%
! CTGAATTTCAGTATAAATAC+AGG + chr5_3:27884113-27884132 None:intergenic 25.0%
! TTATACTGAAATTCAGCTTA+AGG - chr5_3:27884117-27884136 Msa0807100:intron 25.0%
! AACATACATGAATCATTTCA+AGG + chr5_3:27884146-27884165 None:intergenic 25.0%
! ATCACTGTAAACCTATAAAA+GGG + chr5_3:27884236-27884255 None:intergenic 25.0%
!! TCTAACTGTTGACTATTTAA+AGG - chr5_3:27884255-27884274 Msa0807100:intron 25.0%
!! TTTTCAAAGAAATCAATGTC+TGG + chr5_3:27884399-27884418 None:intergenic 25.0%
!! GAGAACTATAAAGTCTTATA+TGG - chr5_3:27884433-27884452 Msa0807100:intron 25.0%
! AGTGTACTAGATTTATAACA+AGG + chr5_3:27884532-27884551 None:intergenic 25.0%
! ATTATCTGCTCTATAATATC+AGG - chr5_3:27884798-27884817 Msa0807100:intron 25.0%
! ATTCATCTAATGATTGCTAA+AGG - chr5_3:27884952-27884971 Msa0807100:CDS 25.0%
! AACTATCTTAGCATATGTAA+TGG + chr5_3:27885151-27885170 None:intergenic 25.0%
! ACTATATTGTCAATTTCAAG+TGG - chr5_3:27885230-27885249 Msa0807100:intron 25.0%
!! TATGTTGTAGCATAAACTTT+TGG - chr5_3:27885521-27885540 Msa0807100:intron 25.0%
!! TAGAAATTGGTTTACCTTAT+TGG + chr5_3:27885618-27885637 None:intergenic 25.0%
! TAGTTACACTAGTTAGAAAT+TGG + chr5_3:27885631-27885650 None:intergenic 25.0%
! CATATCATTATTCATGAGAA+GGG - chr5_3:27885689-27885708 Msa0807100:exon 25.0%
! ATCAAATCAAGAAATTGTCA+AGG - chr5_3:27885769-27885788 Msa0807100:five_prime_UTR 25.0%
! TGTTAATTAATGTCAACCAT+TGG + chr5_3:27885941-27885960 None:intergenic 25.0%
! CATTAATTAACATACTTGGT+AGG - chr5_3:27885949-27885968 Msa0807100:five_prime_UTR 25.0%
!!! CATGTTTTAAGTTATCACGT+GGG + chr5_3:27882673-27882692 None:intergenic 30.0%
!!! TCATGTTTTAAGTTATCACG+TGG + chr5_3:27882674-27882693 None:intergenic 30.0%
ACGTGATAACTTAAAACATG+AGG - chr5_3:27882673-27882692 Msa0807100:three_prime_UTR 30.0%
!! CAAAGAAAGTATTACTACCT+AGG - chr5_3:27882699-27882718 Msa0807100:three_prime_UTR 30.0%
AACATCAACATCAAAATCCT+AGG + chr5_3:27882719-27882738 None:intergenic 30.0%
GAAAAAGATAGTGAAACAAG+AGG - chr5_3:27882750-27882769 Msa0807100:three_prime_UTR 30.0%
CATTGAAGGTGAATATTGTT+TGG + chr5_3:27882845-27882864 None:intergenic 30.0%
! GCTAGTTCTTCTAATTATGA+GGG + chr5_3:27882876-27882895 None:intergenic 30.0%
! AGCTAGTTCTTCTAATTATG+AGG + chr5_3:27882877-27882896 None:intergenic 30.0%
CATCATCATCATCATCATAA+TGG - chr5_3:27882933-27882952 Msa0807100:three_prime_UTR 30.0%
TAAGATAAGACCTTGTTGAT+CGG + chr5_3:27883109-27883128 None:intergenic 30.0%
! TTTTTGTCTATGCTGCAATA+TGG + chr5_3:27883286-27883305 None:intergenic 30.0%
AAAAAAGAGAAGAAGTCACT+TGG - chr5_3:27883301-27883320 Msa0807100:intron 30.0%
! ACAGAACATATGATAATGAG+AGG + chr5_3:27883377-27883396 None:intergenic 30.0%
! ACAATATTGGTTATTTGTGC+AGG - chr5_3:27883619-27883638 Msa0807100:CDS 30.0%
TTCTTCTGAGCAAAAATTTC+TGG - chr5_3:27883642-27883661 Msa0807100:intron 30.0%
AACTCTTTATCACTCATGAT+TGG + chr5_3:27883697-27883716 None:intergenic 30.0%
GTACCAATTGTGATTCAATA+TGG - chr5_3:27883895-27883914 Msa0807100:intron 30.0%
! TCTTTTCTTTTACAGATGGA+AGG - chr5_3:27883928-27883947 Msa0807100:intron 30.0%
! CTTTTCTTTTACAGATGGAA+GGG - chr5_3:27883929-27883948 Msa0807100:intron 30.0%
ATGCAAATGCTCATAAACAA+TGG + chr5_3:27884029-27884048 None:intergenic 30.0%
GATCACTGTAAACCTATAAA+AGG + chr5_3:27884237-27884256 None:intergenic 30.0%
AGTTCATGTTGCATTTGATT+TGG - chr5_3:27884358-27884377 Msa0807100:CDS 30.0%
TAGAACAACAAATAATGCAG+AGG - chr5_3:27884464-27884483 Msa0807100:intron 30.0%
AGAACAACAAATAATGCAGA+GGG - chr5_3:27884465-27884484 Msa0807100:intron 30.0%
! GTATGTGTTGTTAAGCTATT+GGG + chr5_3:27884596-27884615 None:intergenic 30.0%
!!! CTCAAGTCTTTTTTCAAAAC+TGG + chr5_3:27884663-27884682 None:intergenic 30.0%
TTGAAAAAAGACTTGAGACA+AGG - chr5_3:27884666-27884685 Msa0807100:CDS 30.0%
TCTAAATAAGCAATTAGCGA+TGG + chr5_3:27884899-27884918 None:intergenic 30.0%
AAAATGAAACTGAATGGTTC+TGG + chr5_3:27885003-27885022 None:intergenic 30.0%
CAAGTCAAAATGAAACTGAA+TGG + chr5_3:27885009-27885028 None:intergenic 30.0%
!!! CATTCAGTTTCATTTTGACT+TGG - chr5_3:27885007-27885026 Msa0807100:intron 30.0%
AAACCATAGAATGAAAGGAA+CGG + chr5_3:27885040-27885059 None:intergenic 30.0%
!!! TGTGAACTTTTTCATAGACA+AGG - chr5_3:27885546-27885565 Msa0807100:CDS 30.0%
AACACAGTGTATAACCAATA+AGG - chr5_3:27885601-27885620 Msa0807100:CDS 30.0%
GCATATCATTATTCATGAGA+AGG - chr5_3:27885688-27885707 Msa0807100:exon 30.0%
GTAAATAGTTTCTCTACCAA+TGG + chr5_3:27885724-27885743 None:intergenic 30.0%
GTAGAGAAACTATTTACATG+TGG - chr5_3:27885727-27885746 Msa0807100:five_prime_UTR 30.0%
AGAAACTATTTACATGTGGA+AGG - chr5_3:27885731-27885750 Msa0807100:five_prime_UTR 30.0%
! CAAGGTTTTCCATTAGTTAA+AGG - chr5_3:27885787-27885806 Msa0807100:five_prime_UTR 30.0%
ACTTCATTGCCTTTAACTAA+TGG + chr5_3:27885799-27885818 None:intergenic 30.0%
ATAACACACTCTCTCTAACA+TGG + chr5_3:27882558-27882577 None:intergenic 35.0%
TGAAACAAGAGGAGAAGAAA+GGG - chr5_3:27882761-27882780 Msa0807100:three_prime_UTR 35.0%
TTTGGAGGGAAACAAAGATA+AGG + chr5_3:27882827-27882846 None:intergenic 35.0%
GAAGGTGAATATTGTTTGGA+GGG + chr5_3:27882841-27882860 None:intergenic 35.0%
TGAAGGTGAATATTGTTTGG+AGG + chr5_3:27882842-27882861 None:intergenic 35.0%
!! TGAGGGTATTCATTCATTGA+AGG + chr5_3:27882859-27882878 None:intergenic 35.0%
!! GAATATTGTATTGGTGGTGA+TGG + chr5_3:27882900-27882919 None:intergenic 35.0%
CTTCCAATTCAATTCAATGC+CGG - chr5_3:27883027-27883046 Msa0807100:intron 35.0%
GACATTAACAATCTTTAGGC+CGG - chr5_3:27883135-27883154 Msa0807100:intron 35.0%
TGAATAGGCATTCTACTATG+AGG - chr5_3:27883440-27883459 Msa0807100:CDS 35.0%
GAATAGGCATTCTACTATGA+GGG - chr5_3:27883441-27883460 Msa0807100:CDS 35.0%
AAAGGCAACTATGTCAAATG+AGG - chr5_3:27883464-27883483 Msa0807100:intron 35.0%
ATCTCAAAGAAGAACTCATG+TGG - chr5_3:27883496-27883515 Msa0807100:intron 35.0%
TCTCAAAGAAGAACTCATGT+GGG - chr5_3:27883497-27883516 Msa0807100:intron 35.0%
!! AAGGTATCAAGTTGAATCTG+TGG - chr5_3:27883997-27884016 Msa0807100:intron 35.0%
TCAGTATAAATACAGGACAG+AGG + chr5_3:27884106-27884125 None:intergenic 35.0%
TCATGCACTCGATTAAAAGA+AGG + chr5_3:27884336-27884355 None:intergenic 35.0%
GTTCAATGGTTGGAACAAAT+TGG - chr5_3:27884490-27884509 Msa0807100:intron 35.0%
! GGTATGTGTTGTTAAGCTAT+TGG + chr5_3:27884597-27884616 None:intergenic 35.0%
ACTTGAGACAAGGTTTATCA+AGG - chr5_3:27884676-27884695 Msa0807100:CDS 35.0%
GTTTATCAAGGTCGATAGTA+GGG - chr5_3:27884688-27884707 Msa0807100:CDS 35.0%
TTAGATGAAACAGACCAGTT+TGG - chr5_3:27884754-27884773 Msa0807100:intron 35.0%
TAGATGAAACAGACCAGTTT+GGG - chr5_3:27884755-27884774 Msa0807100:intron 35.0%
TGAGATCAACTATCTGATAG+CGG - chr5_3:27884850-27884869 Msa0807100:intron 35.0%
TGAGCAAACCATAGAATGAA+AGG + chr5_3:27885045-27885064 None:intergenic 35.0%
! GTGTTTTCAGTACCACAATT+AGG + chr5_3:27885197-27885216 None:intergenic 35.0%
TGACAATATAGTCCCAAAGA+AGG + chr5_3:27885222-27885241 None:intergenic 35.0%
! CTTCTCACATTTGACTTTGT+TGG + chr5_3:27885264-27885283 None:intergenic 35.0%
AGATTGATTACATTGCCAGA+AGG - chr5_3:27885438-27885457 Msa0807100:intron 35.0%
GTATACACATATCAAGCCAA+TGG + chr5_3:27885843-27885862 None:intergenic 35.0%
AATGTCAACCATTGGAGTTA+AGG + chr5_3:27885933-27885952 None:intergenic 35.0%
TAAGTTATCACGTGGGCATA+GGG + chr5_3:27882666-27882685 None:intergenic 40.0%
TTAAGTTATCACGTGGGCAT+AGG + chr5_3:27882667-27882686 None:intergenic 40.0%
GTGAAACAAGAGGAGAAGAA+AGG - chr5_3:27882760-27882779 Msa0807100:three_prime_UTR 40.0%
ATAAGGCAATGACTAACGTG+TGG + chr5_3:27882810-27882829 None:intergenic 40.0%
!! TGGAGAATGTTGGTCTTGAA+GGG + chr5_3:27882990-27883009 None:intergenic 40.0%
! CGGCATTGAATTGAATTGGA+AGG + chr5_3:27883029-27883048 None:intergenic 40.0%
AAAGAAGAACTCATGTGGGA+AGG - chr5_3:27883501-27883520 Msa0807100:intron 40.0%
GCATCTATTGCTTATGTGTC+TGG - chr5_3:27883667-27883686 Msa0807100:intron 40.0%
CAATGGTTGGAACAAATTGG+AGG - chr5_3:27884493-27884512 Msa0807100:intron 40.0%
! CTAGTACACTCGCTTCATTT+TGG - chr5_3:27884542-27884561 Msa0807100:intron 40.0%
GGTTTATCAAGGTCGATAGT+AGG - chr5_3:27884687-27884706 Msa0807100:CDS 40.0%
!! TTCTTCCTTGATGATGTGAC+TGG - chr5_3:27884824-27884843 Msa0807100:intron 40.0%
CAAATCCAGTCACATCATCA+AGG + chr5_3:27884832-27884851 None:intergenic 40.0%
CAATTAGCGATGGTAGAACA+AGG + chr5_3:27884889-27884908 None:intergenic 40.0%
TCAGTACCACAATTAGGACA+TGG + chr5_3:27885191-27885210 None:intergenic 40.0%
ACTGAAAACACCTCCTTCTT+TGG - chr5_3:27885206-27885225 Msa0807100:intron 40.0%
CTGAAAACACCTCCTTCTTT+GGG - chr5_3:27885207-27885226 Msa0807100:intron 40.0%
CAATATAGTCCCAAAGAAGG+AGG + chr5_3:27885219-27885238 None:intergenic 40.0%
! CTCACATTTGACTTTGTTGG+TGG + chr5_3:27885261-27885280 None:intergenic 40.0%
CCACAGCTGAAGCATAAATT+TGG + chr5_3:27885390-27885409 None:intergenic 40.0%
CCAAATTTATGCTTCAGCTG+TGG - chr5_3:27885387-27885406 Msa0807100:CDS 40.0%
ACTTATGCAGTACTTCCTTC+TGG + chr5_3:27885456-27885475 None:intergenic 40.0%
!! AGGAAGTACTGCATAAGTGA+AGG - chr5_3:27885458-27885477 Msa0807100:intron 40.0%
!! AGAAGGGATTAGTTCTCCAT+TGG - chr5_3:27885705-27885724 Msa0807100:five_prime_UTR 40.0%
TGAAGTCATTATGCTCACTC+TGG - chr5_3:27885813-27885832 Msa0807100:five_prime_UTR 40.0%
ATGAGGATCCTTAACTCCAA+TGG - chr5_3:27885922-27885941 Msa0807100:five_prime_UTR 40.0%
TAGCTGAAACAAACTTGTGG+AGG + chr5_3:27886002-27886021 None:intergenic 40.0%
AGCTAGCTGAAACAAACTTG+TGG + chr5_3:27886005-27886024 None:intergenic 40.0%
!! GTGGAGAATGTTGGTCTTGA+AGG + chr5_3:27882991-27883010 None:intergenic 45.0%
GTAGCAGAAGTGGAGAATGT+TGG + chr5_3:27883000-27883019 None:intergenic 45.0%
AAGGACTCTAGTAGCAGAAG+TGG + chr5_3:27883010-27883029 None:intergenic 45.0%
! CCACCGGCATTGAATTGAAT+TGG + chr5_3:27883033-27883052 None:intergenic 45.0%
CCAATTCAATTCAATGCCGG+TGG - chr5_3:27883030-27883049 Msa0807100:intron 45.0%
! CCTTAGGGGAAAGCACAAAT+AGG + chr5_3:27883080-27883099 None:intergenic 45.0%
CCTATTTGTGCTTTCCCCTA+AGG - chr5_3:27883077-27883096 Msa0807100:intron 45.0%
GATAAGACCTTGTTGATCGG+AGG + chr5_3:27883106-27883125 None:intergenic 45.0%
GGCATTCTACTATGAGGGAA+AGG - chr5_3:27883446-27883465 Msa0807100:CDS 45.0%
GATGGAAGGGAGTGAAATTG+TGG - chr5_3:27883942-27883961 Msa0807100:intron 45.0%
TTCTACTACGAAGACTGCAC+CGG + chr5_3:27883978-27883997 None:intergenic 45.0%
GTGCAGTCTTCGTAGTAGAA+AGG - chr5_3:27883978-27883997 Msa0807100:intron 45.0%
CTAATGCAATCACAGTTGCC+GGG + chr5_3:27884297-27884316 None:intergenic 45.0%
CCTAATGCAATCACAGTTGC+CGG + chr5_3:27884298-27884317 None:intergenic 45.0%
TAATGCAGAGGGCAGTTCAA+TGG - chr5_3:27884476-27884495 Msa0807100:intron 45.0%
CTGCCGTTCCTTTCATTCTA+TGG - chr5_3:27885034-27885053 Msa0807100:intron 45.0%
AACAAACTTGTGGAGGTGGT+AGG + chr5_3:27885995-27886014 None:intergenic 45.0%
CTGAAACAAACTTGTGGAGG+TGG + chr5_3:27885999-27886018 None:intergenic 45.0%
!!! TAAATTTAGAAAATTAATTT+TGG - chr5_3:27882612-27882631 Msa0807100:three_prime_UTR 5.0%
GGCAATGACTAACGTGTGGA+GGG + chr5_3:27882806-27882825 None:intergenic 50.0%
AGGCAATGACTAACGTGTGG+AGG + chr5_3:27882807-27882826 None:intergenic 50.0%
! GGGAAAGCACAAATAGGCCT+CGG + chr5_3:27883074-27883093 None:intergenic 50.0%
AAGACCTTGTTGATCGGAGG+TGG + chr5_3:27883103-27883122 None:intergenic 50.0%
TCAACCTTGCCAGCTGAAGA+GGG + chr5_3:27883232-27883251 None:intergenic 50.0%
AGGGAGTGAAATTGTGGCAG+AGG - chr5_3:27883948-27883967 Msa0807100:intron 50.0%
GGGAGTGAAATTGTGGCAGA+GGG - chr5_3:27883949-27883968 Msa0807100:intron 50.0%
TCTACTACGAAGACTGCACC+GGG + chr5_3:27883977-27883996 None:intergenic 50.0%
CCGGCAACTGTGATTGCATT+AGG - chr5_3:27884295-27884314 Msa0807100:intron 50.0%
AGCAAGTGTCAAGCCCAAAC+TGG + chr5_3:27884771-27884790 None:intergenic 50.0%
TAGGGGCCATGTCCTAATTG+TGG - chr5_3:27885182-27885201 Msa0807100:CDS 50.0%
!! TGCTCACTCTGGAACACCAT+TGG - chr5_3:27885824-27885843 Msa0807100:five_prime_UTR 50.0%
GTTATCACGTGGGCATAGGG+TGG + chr5_3:27882663-27882682 None:intergenic 55.0%
GACTAACGTGTGGAGGGACT+TGG + chr5_3:27882800-27882819 None:intergenic 55.0%
CACAAATAGGCCTCGGCGAA+GGG + chr5_3:27883067-27883086 None:intergenic 55.0%
! TTGATCGGAGGTGGCCTTAG+GGG + chr5_3:27883094-27883113 None:intergenic 55.0%
! GTTGATCGGAGGTGGCCTTA+GGG + chr5_3:27883095-27883114 None:intergenic 55.0%
TGTTGATCGGAGGTGGCCTT+AGG + chr5_3:27883096-27883115 None:intergenic 55.0%
AAGGCCACCTCCGATCAACA+AGG - chr5_3:27883096-27883115 Msa0807100:intron 55.0%
TGTTTCCTCCCCTCTTCAGC+TGG - chr5_3:27883220-27883239 Msa0807100:CDS 55.0%
CAACCTTGCCAGCTGAAGAG+GGG + chr5_3:27883231-27883250 None:intergenic 55.0%
CTCAACCTTGCCAGCTGAAG+AGG + chr5_3:27883233-27883252 None:intergenic 55.0%
CTCTTCAGCTGGCAAGGTTG+AGG - chr5_3:27883231-27883250 Msa0807100:intron 55.0%
TGGTGTGTGTGTGTGCGCAA+CGG - chr5_3:27883848-27883867 Msa0807100:intron 55.0%
AAATTGTGGCAGAGGGTCCC+CGG - chr5_3:27883956-27883975 Msa0807100:intron 55.0%
CTACTACGAAGACTGCACCG+GGG + chr5_3:27883976-27883995 None:intergenic 55.0%
CAGTTGCCGGGACTTTCAGT+AGG + chr5_3:27884285-27884304 None:intergenic 55.0%
GCAGAGGGCAGTTCAATGGT+TGG - chr5_3:27884480-27884499 Msa0807100:intron 55.0%
GGTCGATAGTAGGGTGAGTG+AGG - chr5_3:27884697-27884716 Msa0807100:intron 55.0%
GCACAAATAGGCCTCGGCGA+AGG + chr5_3:27883068-27883087 None:intergenic 60.0%
GGTGTGTGTGTGTGCGCAAC+GGG - chr5_3:27883849-27883868 Msa0807100:intron 60.0%
GGCGCTCCTACTGAAAGTCC+CGG - chr5_3:27884276-27884295 Msa0807100:intron 60.0%
AAGGGATGAGTGGCGGCCAC+CGG + chr5_3:27883049-27883068 None:intergenic 65.0%
CTCGGCGAAGGGATGAGTGG+CGG + chr5_3:27883056-27883075 None:intergenic 65.0%
CCTTGCCAGCTGAAGAGGGG+AGG + chr5_3:27883228-27883247 None:intergenic 65.0%
CCTCCCCTCTTCAGCTGGCA+AGG - chr5_3:27883225-27883244 Msa0807100:CDS 65.0%
CGCCACTCATCCCTTCGCCG+AGG - chr5_3:27883054-27883073 Msa0807100:intron 70.0%
GGCCTCGGCGAAGGGATGAG+TGG + chr5_3:27883059-27883078 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 27882548 27886105 27882548 ID=Msa0807100;Name=Msa0807100
chr5_3 mRNA 27882548 27886105 27882548 ID=Msa0807100-mRNA-1;Parent=Msa0807100;Name=Msa0807100-mRNA-1;_AED=0.16;_eAED=0.16;_QI=404|1|1|1|0.8|0.81|11|424|315
chr5_3 exon 27882548 27882965 27882548 ID=Msa0807100-mRNA-1:exon:9905;Parent=Msa0807100-mRNA-1
chr5_3 exon 27883174 27883249 27883174 ID=Msa0807100-mRNA-1:exon:9904;Parent=Msa0807100-mRNA-1
chr5_3 exon 27883371 27883468 27883371 ID=Msa0807100-mRNA-1:exon:9903;Parent=Msa0807100-mRNA-1
chr5_3 exon 27883546 27883656 27883546 ID=Msa0807100-mRNA-1:exon:9902;Parent=Msa0807100-mRNA-1
chr5_3 exon 27883782 27883833 27883782 ID=Msa0807100-mRNA-1:exon:9901;Parent=Msa0807100-mRNA-1
chr5_3 exon 27884333 27884409 27884333 ID=Msa0807100-mRNA-1:exon:9900;Parent=Msa0807100-mRNA-1
chr5_3 exon 27884654 27884710 27884654 ID=Msa0807100-mRNA-1:exon:9899;Parent=Msa0807100-mRNA-1
chr5_3 exon 27884912 27885012 27884912 ID=Msa0807100-mRNA-1:exon:9898;Parent=Msa0807100-mRNA-1
chr5_3 exon 27885110 27885206 27885110 ID=Msa0807100-mRNA-1:exon:9897;Parent=Msa0807100-mRNA-1
chr5_3 exon 27885296 27885414 27885296 ID=Msa0807100-mRNA-1:exon:9896;Parent=Msa0807100-mRNA-1
chr5_3 exon 27885536 27886105 27885536 ID=Msa0807100-mRNA-1:exon:9895;Parent=Msa0807100-mRNA-1
chr5_3 five_prime_UTR 27885702 27886105 27885702 ID=Msa0807100-mRNA-1:five_prime_utr;Parent=Msa0807100-mRNA-1
chr5_3 CDS 27885536 27885701 27885536 ID=Msa0807100-mRNA-1:cds;Parent=Msa0807100-mRNA-1
chr5_3 CDS 27885296 27885414 27885296 ID=Msa0807100-mRNA-1:cds;Parent=Msa0807100-mRNA-1
chr5_3 CDS 27885110 27885206 27885110 ID=Msa0807100-mRNA-1:cds;Parent=Msa0807100-mRNA-1
chr5_3 CDS 27884912 27885012 27884912 ID=Msa0807100-mRNA-1:cds;Parent=Msa0807100-mRNA-1
chr5_3 CDS 27884654 27884710 27884654 ID=Msa0807100-mRNA-1:cds;Parent=Msa0807100-mRNA-1
chr5_3 CDS 27884333 27884409 27884333 ID=Msa0807100-mRNA-1:cds;Parent=Msa0807100-mRNA-1
chr5_3 CDS 27883782 27883833 27883782 ID=Msa0807100-mRNA-1:cds;Parent=Msa0807100-mRNA-1
chr5_3 CDS 27883546 27883656 27883546 ID=Msa0807100-mRNA-1:cds;Parent=Msa0807100-mRNA-1
chr5_3 CDS 27883371 27883468 27883371 ID=Msa0807100-mRNA-1:cds;Parent=Msa0807100-mRNA-1
chr5_3 CDS 27883180 27883249 27883180 ID=Msa0807100-mRNA-1:cds;Parent=Msa0807100-mRNA-1
chr5_3 three_prime_UTR 27883174 27883179 27883174 ID=Msa0807100-mRNA-1:three_prime_utr;Parent=Msa0807100-mRNA-1
chr5_3 three_prime_UTR 27882548 27882965 27882548 ID=Msa0807100-mRNA-1:three_prime_utr;Parent=Msa0807100-mRNA-1
Gene Sequence

>Msa0807100

ATGGCTAGTAAATTATTAGCATTCACATTGACATGCCCTTCAAGACCAACATTCTCCACTTCTGCTACTAGAGTCCTTCCAATTCAATTCAATGCCGGTGGCCGCCACTCATCCCTTCGCCGAGGCCTATTTGTGCTTTCCCCTAAGGCCACCTCCGATCAACAAGCTGGCAAGGTTGAGGAAGATGCTGTTGTTGATAGTAAAATCTTACCATATTGCAGCATAGACAAAAAAGAGAAGAAGTCACTTGGTGAACTTGAGCAAGATTTTCTTCAAGCACTTCAAGCATTCTACTATGAGGGAAAGGCAACTATGTCAAATGAGGAATTTGATAATCTCAAAGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTAATGCTAAGTTCTTCTGAGCAAAAATTTCTGGAAGCATCTATTGCTTATGTGTCTGGAAAACCAATCATGAGTGATAAAGAGTTTGATGAATTAAAACTGAAGCTAAAGATGGAAGGGAGTGAAATTGTGGCAGAGGGTCCCCGGTGCAGTCTTCGTAGTAGAAAGGTTTACAGTGATCTAACTGTTGACTATTTAAAGGCGCTCCTACTGAAAGTCCCGGCAACTGTGATTGCATTAGGATTGTTCTTCTTCCTTGATGATGTGACTGGATTTGAGATCAACTATCTGATAGCGATTCCAGAACCATTCAGTTTCATTTTGACTTGGTTTGCTGCCGTTCCTTTCATTCTATGGTTTGCTCAGTCAATTACAAATGCAATTATAAAAGATTTCTTGATTTTGAAGGGGCCATGTCCTAATTGTGGTACTGAAAACACCTCCTTCTTTGGGACTATATTGTCAATTTCAAGTGGAAATTCCACCAACAAAGTCAAATGTGAGAACTGTGGAACTGTGATGCTATATGATTCAACTACAAGATTGATTACATTGCCAGAAGGAAGTACTGCATAA

Protein sequence

>Msa0807100

MASKLLAFTLTCPSRPTFSTSATRVLPIQFNAGGRHSSLRRGLFVLSPKATSDQQAGKVEEDAVVDSKILPYCSIDKKEKKSLGELEQDFLQALQAFYYEGKATMSNEEFDNLKEELMWEGSSVVMLSSSEQKFLEASIAYVSGKPIMSDKEFDELKLKLKMEGSEIVAEGPRCSLRSRKVYSDLTVDYLKALLLKVPATVIALGLFFFLDDVTGFEINYLIAIPEPFSFILTWFAAVPFILWFAQSITNAIIKDFLILKGPCPNCGTENTSFFGTILSISSGNSTNKVKCENCGTVMLYDSTTRLITLPEGSTA*