Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608050 | XP_003607427.1 | 99.367 | 474 | 3 | 0 | 1 | 474 | 611 | 1084 | 0.0 | 980 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608050 | sp|Q9M9M4|CSLD3_ARATH | 88.421 | 475 | 53 | 2 | 1 | 474 | 614 | 1087 | 0.0 | 881 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608050 | G7JSR7 | 99.367 | 474 | 3 | 0 | 1 | 474 | 611 | 1084 | 0.0 | 980 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0608050 | Msa0608060 | 0.964019 | 8.405969e-123 | -8.615850e-47 |
| Msa0608050 | Msa0648430 | 0.911975 | 3.303975e-83 | -8.615850e-47 |
| Msa0608050 | Msa0648440 | 0.954296 | 4.074085e-112 | -8.615850e-47 |
| Msa0608050 | Msa0802750 | 0.805282 | 1.439236e-49 | -8.615850e-47 |
| Msa0608050 | Msa0841060 | 0.838637 | 2.555500e-57 | -8.615850e-47 |
| Msa0608050 | Msa1026770 | 0.827763 | 1.307208e-54 | -8.615850e-47 |
| Msa0608050 | Msa1026800 | 0.834109 | 3.623626e-56 | -8.615850e-47 |
| Msa0608050 | Msa1083130 | 0.805166 | 1.522181e-49 | -8.615850e-47 |
| Msa0608050 | Msa1111770 | 0.810492 | 1.122098e-50 | -8.615850e-47 |
| Msa0608050 | Msa1127910 | 0.806625 | 7.509640e-50 | -8.615850e-47 |
| Msa0608050 | Msa1175380 | 0.816685 | 4.869028e-52 | -8.615850e-47 |
| Msa0608050 | Msa1218320 | 0.892524 | 1.465982e-74 | -8.615850e-47 |
| Msa0608050 | Msa1218360 | 0.891611 | 3.391148e-74 | -8.615850e-47 |
| Msa0608050 | Msa1221290 | 0.807068 | 6.053831e-50 | -8.615850e-47 |
| Msa0608050 | Msa1277350 | 0.816516 | 5.311987e-52 | -8.615850e-47 |
| Msa0608050 | Msa1315760 | 0.806505 | 7.964061e-50 | -8.615850e-47 |
| Msa0608050 | Msa1452090 | 0.805148 | 1.535172e-49 | -8.615850e-47 |
| Msa0207680 | Msa0608050 | 0.814190 | 1.747999e-51 | -8.615850e-47 |
| Msa0207690 | Msa0608050 | 0.826228 | 3.044349e-54 | -8.615850e-47 |
| Msa0209360 | Msa0608050 | 0.838189 | 3.334144e-57 | -8.615850e-47 |
| Msa0553950 | Msa0608050 | 0.821238 | 4.490826e-53 | -8.615850e-47 |
| Msa0570680 | Msa0608050 | -0.808566 | 2.907797e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608050 | MtrunA17_Chr4g0039801 | 99.367 | 474 | 3 | 0 | 1 | 474 | 611 | 1084 | 0.0 | 980 |
| Msa0608050 | MtrunA17_Chr5g0410641 | 80.544 | 478 | 85 | 2 | 1 | 474 | 590 | 1063 | 0.0 | 808 |
| Msa0608050 | MtrunA17_Chr2g0297351 | 73.640 | 478 | 113 | 4 | 1 | 474 | 498 | 966 | 0.0 | 753 |
| Msa0608050 | MtrunA17_Chr1g0165411 | 75.158 | 475 | 107 | 2 | 1 | 474 | 581 | 1045 | 0.0 | 748 |
| Msa0608050 | MtrunA17_Chr7g0269741 | 74.587 | 484 | 108 | 5 | 1 | 474 | 634 | 1112 | 0.0 | 743 |
| Msa0608050 | MtrunA17_Chr1g0165421 | 73.695 | 479 | 121 | 1 | 1 | 474 | 595 | 1073 | 0.0 | 735 |
| Msa0608050 | MtrunA17_Chr7g0274751 | 75.991 | 429 | 28 | 7 | 1 | 429 | 399 | 752 | 0.0 | 633 |
| Msa0608050 | MtrunA17_Chr4g0073711 | 52.686 | 484 | 196 | 9 | 1 | 474 | 517 | 977 | 1.05e-176 | 523 |
| Msa0608050 | MtrunA17_Chr8g0383701 | 49.206 | 504 | 203 | 10 | 1 | 474 | 555 | 1035 | 1.30e-162 | 488 |
| Msa0608050 | MtrunA17_Chr8g0352231 | 48.907 | 503 | 206 | 9 | 1 | 474 | 537 | 1017 | 1.30e-162 | 488 |
| Msa0608050 | MtrunA17_Chr2g0284211 | 49.797 | 492 | 205 | 9 | 2 | 474 | 448 | 916 | 1.37e-162 | 484 |
| Msa0608050 | MtrunA17_Chr8g0379241 | 50.407 | 492 | 199 | 9 | 2 | 474 | 463 | 928 | 5.55e-160 | 478 |
| Msa0608050 | MtrunA17_Chr2g0296991 | 47.510 | 522 | 200 | 10 | 1 | 474 | 488 | 983 | 8.92e-160 | 479 |
| Msa0608050 | MtrunA17_Chr1g0183381 | 50.000 | 480 | 209 | 10 | 1 | 474 | 389 | 843 | 1.97e-159 | 474 |
| Msa0608050 | MtrunA17_Chr3g0137951 | 47.600 | 500 | 213 | 8 | 1 | 473 | 547 | 1024 | 1.80e-154 | 467 |
| Msa0608050 | MtrunA17_Chr3g0088821 | 48.708 | 503 | 207 | 11 | 1 | 474 | 537 | 1017 | 1.81e-154 | 466 |
| Msa0608050 | MtrunA17_Chr1g0201731 | 48.509 | 503 | 207 | 8 | 1 | 474 | 557 | 1036 | 5.04e-154 | 466 |
| Msa0608050 | MtrunA17_Chr7g0267731 | 48.297 | 499 | 211 | 10 | 1 | 474 | 449 | 925 | 5.42e-152 | 457 |
| Msa0608050 | MtrunA17_Chr8g0364641 | 45.248 | 484 | 220 | 12 | 1 | 473 | 470 | 919 | 1.94e-137 | 419 |
| Msa0608050 | MtrunA17_Chr3g0078671 | 42.772 | 505 | 238 | 7 | 1 | 474 | 504 | 988 | 1.28e-136 | 419 |
| Msa0608050 | MtrunA17_Chr3g0126641 | 68.664 | 217 | 52 | 4 | 39 | 246 | 1 | 210 | 1.53e-101 | 302 |
| Msa0608050 | MtrunA17_Chr4g0046401 | 30.870 | 460 | 255 | 8 | 1 | 456 | 277 | 677 | 3.91e-55 | 196 |
| Msa0608050 | MtrunA17_Chr2g0322371 | 28.998 | 469 | 254 | 12 | 1 | 452 | 266 | 672 | 9.83e-53 | 189 |
| Msa0608050 | MtrunA17_Chr4g0025201 | 28.384 | 458 | 269 | 9 | 1 | 452 | 270 | 674 | 3.21e-51 | 185 |
| Msa0608050 | MtrunA17_Chr2g0322361 | 29.769 | 477 | 255 | 16 | 1 | 458 | 276 | 691 | 9.98e-51 | 184 |
| Msa0608050 | MtrunA17_Chr2g0322351 | 29.825 | 456 | 259 | 11 | 1 | 452 | 271 | 669 | 3.19e-46 | 171 |
| Msa0608050 | MtrunA17_Chr1g0186381 | 25.870 | 460 | 277 | 9 | 1 | 456 | 277 | 676 | 3.73e-41 | 156 |
| Msa0608050 | MtrunA17_Chr3g0077511 | 25.270 | 463 | 279 | 8 | 1 | 455 | 253 | 656 | 1.23e-40 | 154 |
| Msa0608050 | MtrunA17_Chr3g0095791 | 26.282 | 468 | 268 | 13 | 1 | 456 | 252 | 654 | 2.17e-38 | 148 |
| Msa0608050 | MtrunA17_Chr2g0307191 | 25.523 | 478 | 289 | 11 | 1 | 472 | 253 | 669 | 9.43e-38 | 146 |
| Msa0608050 | MtrunA17_Chr2g0298581 | 23.950 | 476 | 299 | 8 | 1 | 472 | 253 | 669 | 1.33e-37 | 146 |
| Msa0608050 | MtrunA17_Chr3g0102541 | 25.768 | 423 | 244 | 8 | 1 | 422 | 281 | 634 | 6.19e-31 | 126 |
| Msa0608050 | MtrunA17_Chr2g0322331 | 28.517 | 263 | 175 | 4 | 194 | 448 | 51 | 308 | 8.95e-29 | 117 |
| Msa0608050 | MtrunA17_Chr3g0102551 | 30.660 | 212 | 146 | 1 | 212 | 422 | 428 | 639 | 1.32e-25 | 110 |
| Msa0608050 | MtrunA17_Chr3g0102551 | 42.718 | 103 | 58 | 1 | 1 | 102 | 291 | 393 | 2.32e-21 | 97.4 |
| Msa0608050 | MtrunA17_Chr3g0102531 | 27.843 | 255 | 175 | 4 | 174 | 422 | 382 | 633 | 1.76e-25 | 110 |
| Msa0608050 | MtrunA17_Chr3g0102531 | 45.631 | 103 | 55 | 1 | 1 | 102 | 280 | 382 | 7.52e-23 | 102 |
| Msa0608050 | MtrunA17_Chr0c03g0490021 | 41.071 | 112 | 64 | 1 | 363 | 474 | 1 | 110 | 2.02e-22 | 93.2 |
| Msa0608050 | MtrunA17_Chr8g0355061 | 61.404 | 57 | 22 | 0 | 363 | 419 | 1 | 57 | 1.35e-19 | 82.4 |
| Msa0608050 | MtrunA17_Chr2g0322341 | 43.478 | 69 | 38 | 1 | 1 | 68 | 275 | 343 | 1.19e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608050 | AT3G03050.1 | 88.421 | 475 | 53 | 2 | 1 | 474 | 614 | 1087 | 0.0 | 881 |
| Msa0608050 | AT5G16910.1 | 86.920 | 474 | 59 | 2 | 1 | 474 | 617 | 1087 | 0.0 | 866 |
| Msa0608050 | AT2G33100.2 | 73.760 | 484 | 109 | 4 | 1 | 474 | 505 | 980 | 0.0 | 759 |
| Msa0608050 | AT2G33100.1 | 73.760 | 484 | 109 | 4 | 1 | 474 | 505 | 980 | 0.0 | 759 |
| Msa0608050 | AT4G38190.1 | 74.473 | 474 | 104 | 2 | 1 | 474 | 592 | 1048 | 0.0 | 749 |
| Msa0608050 | AT1G02730.1 | 72.951 | 488 | 113 | 4 | 1 | 474 | 642 | 1124 | 0.0 | 740 |
| Msa0608050 | AT1G32180.1 | 67.715 | 477 | 146 | 4 | 1 | 473 | 451 | 923 | 0.0 | 679 |
| Msa0608050 | AT1G32180.2 | 67.715 | 477 | 146 | 4 | 1 | 473 | 451 | 923 | 0.0 | 679 |
| Msa0608050 | AT5G17420.1 | 50.309 | 485 | 207 | 9 | 1 | 474 | 504 | 965 | 2.35e-169 | 504 |
| Msa0608050 | AT5G05170.1 | 50.199 | 502 | 200 | 10 | 1 | 474 | 525 | 1004 | 3.05e-165 | 494 |
| Msa0608050 | AT5G44030.3 | 46.692 | 529 | 206 | 8 | 1 | 474 | 202 | 709 | 5.27e-165 | 485 |
| Msa0608050 | AT5G64740.1 | 48.119 | 505 | 208 | 8 | 1 | 474 | 542 | 1023 | 7.10e-163 | 489 |
| Msa0608050 | AT5G09870.1 | 48.008 | 502 | 210 | 7 | 1 | 474 | 530 | 1008 | 4.11e-162 | 486 |
| Msa0608050 | AT2G21770.1 | 47.826 | 506 | 205 | 9 | 1 | 474 | 548 | 1026 | 2.55e-161 | 485 |
| Msa0608050 | AT5G44030.1 | 46.692 | 529 | 206 | 8 | 1 | 474 | 481 | 988 | 2.92e-161 | 484 |
| Msa0608050 | AT5G44030.2 | 46.692 | 529 | 206 | 8 | 1 | 474 | 510 | 1017 | 4.72e-161 | 484 |
| Msa0608050 | AT4G18780.1 | 50.101 | 495 | 202 | 11 | 2 | 474 | 451 | 922 | 1.56e-160 | 480 |
| Msa0608050 | AT2G25540.1 | 49.602 | 502 | 202 | 13 | 1 | 474 | 521 | 999 | 8.24e-159 | 478 |
| Msa0608050 | AT4G32410.1 | 49.102 | 501 | 206 | 10 | 1 | 474 | 541 | 1019 | 1.43e-158 | 478 |
| Msa0608050 | AT4G39350.1 | 47.117 | 503 | 214 | 8 | 1 | 474 | 543 | 1022 | 2.18e-148 | 451 |
| Msa0608050 | AT2G32620.4 | 29.289 | 478 | 258 | 16 | 1 | 454 | 178 | 599 | 2.83e-53 | 190 |
| Msa0608050 | AT2G32530.1 | 29.436 | 479 | 258 | 15 | 1 | 454 | 274 | 697 | 8.84e-53 | 190 |
| Msa0608050 | AT2G32620.1 | 29.289 | 478 | 258 | 16 | 1 | 454 | 274 | 695 | 1.19e-52 | 189 |
| Msa0608050 | AT2G32610.1 | 29.339 | 484 | 259 | 15 | 1 | 458 | 275 | 701 | 6.76e-52 | 187 |
| Msa0608050 | AT4G15290.1 | 27.907 | 473 | 270 | 12 | 1 | 455 | 274 | 693 | 1.76e-49 | 181 |
| Msa0608050 | AT4G15320.5 | 28.870 | 478 | 260 | 13 | 1 | 455 | 274 | 694 | 4.45e-49 | 179 |
| Msa0608050 | AT4G15320.3 | 28.870 | 478 | 260 | 13 | 1 | 455 | 274 | 694 | 5.12e-49 | 179 |
| Msa0608050 | AT4G15320.4 | 28.870 | 478 | 260 | 13 | 1 | 455 | 289 | 709 | 5.26e-49 | 179 |
| Msa0608050 | AT2G32540.1 | 27.195 | 467 | 271 | 10 | 1 | 449 | 274 | 689 | 3.20e-48 | 177 |
| Msa0608050 | AT2G32620.3 | 30.971 | 381 | 199 | 13 | 1 | 373 | 274 | 598 | 1.13e-46 | 171 |
| Msa0608050 | AT4G15320.2 | 28.502 | 414 | 222 | 12 | 5 | 413 | 324 | 668 | 1.68e-40 | 155 |
| Msa0608050 | AT4G15320.1 | 28.502 | 414 | 222 | 12 | 5 | 413 | 367 | 711 | 3.06e-40 | 154 |
| Msa0608050 | AT2G32620.2 | 31.818 | 308 | 158 | 10 | 1 | 306 | 274 | 531 | 1.46e-38 | 147 |
| Msa0608050 | AT4G23990.2 | 30.325 | 277 | 185 | 5 | 181 | 452 | 200 | 473 | 3.81e-33 | 132 |
| Msa0608050 | AT4G23990.2 | 44.660 | 103 | 56 | 1 | 1 | 102 | 90 | 192 | 1.65e-20 | 94.7 |
| Msa0608050 | AT4G23990.1 | 31.047 | 277 | 183 | 5 | 181 | 452 | 414 | 687 | 1.25e-32 | 132 |
| Msa0608050 | AT4G23990.1 | 44.660 | 103 | 56 | 1 | 1 | 102 | 304 | 406 | 2.11e-20 | 95.1 |
| Msa0608050 | AT4G24010.1 | 29.371 | 286 | 186 | 4 | 188 | 457 | 388 | 673 | 1.47e-31 | 129 |
| Msa0608050 | AT4G24010.1 | 47.706 | 109 | 50 | 3 | 1 | 106 | 285 | 389 | 8.11e-23 | 102 |
| Msa0608050 | AT4G24000.2 | 25.704 | 284 | 195 | 3 | 188 | 455 | 186 | 469 | 1.85e-29 | 121 |
| Msa0608050 | AT4G24000.2 | 46.729 | 107 | 54 | 2 | 1 | 106 | 83 | 187 | 9.74e-23 | 101 |
| Msa0608050 | AT4G24000.1 | 25.704 | 284 | 195 | 3 | 188 | 455 | 378 | 661 | 5.13e-29 | 121 |
| Msa0608050 | AT4G24000.1 | 46.729 | 107 | 54 | 2 | 1 | 106 | 275 | 379 | 1.16e-22 | 102 |
| Msa0608050 | AT1G55850.1 | 29.557 | 203 | 142 | 1 | 209 | 410 | 417 | 619 | 1.74e-24 | 107 |
| Msa0608050 | AT1G55850.1 | 44.660 | 103 | 56 | 1 | 1 | 102 | 289 | 391 | 5.57e-21 | 96.7 |
Find 125 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACAATTCTCGAAGAAATT+TGG | 0.083180 | 4_2:-55059601 | Msa0608050:CDS |
| TTTAGAAGGTTTGCTCTTTA+TGG | 0.101361 | 4_2:-55059769 | Msa0608050:CDS |
| CACAATTCTCGAAGAAATTT+GGG | 0.254749 | 4_2:-55059600 | Msa0608050:CDS |
| CTGAAGAAATTTCATTCTTC+GGG | 0.263526 | 4_2:+55059168 | None:intergenic |
| ATGGATAAATTCCAACATTA+AGG | 0.302386 | 4_2:+55059134 | None:intergenic |
| CCTCAAACCTTTGAGGGAAT+TGG | 0.310418 | 4_2:+55059902 | None:intergenic |
| CAGTCGAGGTTAAGTATAAA+AGG | 0.311934 | 4_2:+55060009 | None:intergenic |
| CATTCTTCCAGCTCAATTCC+TGG | 0.312126 | 4_2:+55058956 | None:intergenic |
| TCTGAAGAAATTTCATTCTT+CGG | 0.312803 | 4_2:+55059167 | None:intergenic |
| GAAAGATGCACGGTCTTCTT+TGG | 0.315405 | 4_2:+55059729 | None:intergenic |
| CATCTAGCTGCCGTGCTTCA+AGG | 0.325137 | 4_2:-55058890 | Msa0608050:CDS |
| CTTTCTGTAGTTGTTGCTTT+GGG | 0.345629 | 4_2:-55059711 | Msa0608050:CDS |
| CAGCGTGTTGGATGGATCTA+TGG | 0.346588 | 4_2:-55059385 | Msa0608050:CDS |
| ATCATGATGGTGAACTTAAT+AGG | 0.347488 | 4_2:-55058734 | Msa0608050:CDS |
| CCTGCACTGTCCCTCTTCTC+TGG | 0.348700 | 4_2:-55059076 | Msa0608050:CDS |
| GGCTCTAACCAATGCATTCA+TGG | 0.354035 | 4_2:+55060053 | None:intergenic |
| GAACCGGCTGTCTGTTTAGA+AGG | 0.363424 | 4_2:-55059783 | Msa0608050:CDS |
| GGTGGAGAAATGAGCAGTTT+TGG | 0.370436 | 4_2:-55058934 | Msa0608050:CDS |
| CCACTGGAATTGAGTCAATA+AGG | 0.376702 | 4_2:+55059566 | None:intergenic |
| TTCACCTTGACTTCAAAATC+TGG | 0.386447 | 4_2:-55058833 | Msa0608050:CDS |
| CCACAGTGGAGCCGGTTACT+AGG | 0.393714 | 4_2:-55058671 | Msa0608050:CDS |
| CATACCTTCCCTCATTGCTT+TGG | 0.393894 | 4_2:+55059966 | None:intergenic |
| GGTTTACTCAAAGTCGTTGC+AGG | 0.397549 | 4_2:-55058869 | Msa0608050:CDS |
| GGTTGCATCAGGTTCTTAGA+TGG | 0.399286 | 4_2:-55059243 | Msa0608050:CDS |
| AGGATGTGGTCACTGGTTAT+AGG | 0.400288 | 4_2:-55059351 | Msa0608050:CDS |
| TCTTTCTGTAGTTGTTGCTT+TGG | 0.401037 | 4_2:-55059712 | Msa0608050:CDS |
| TTCACCATCATGATTACAAT+TGG | 0.413824 | 4_2:+55058743 | None:intergenic |
| CCTGTTCTCTTCTGAGGTGT+TGG | 0.424667 | 4_2:+55059669 | None:intergenic |
| TTACAATTGGTGGTATCATA+AGG | 0.426130 | 4_2:+55058756 | None:intergenic |
| CCAACACCTCAGAAGAGAAC+AGG | 0.449199 | 4_2:-55059669 | Msa0608050:CDS |
| GGCCCAGTCTATGTAGGAAC+CGG | 0.456340 | 4_2:-55059799 | Msa0608050:CDS |
| GTTAACATGAGAGCCCTTGA+TGG | 0.465182 | 4_2:-55059829 | Msa0608050:CDS |
| AGAGCCCTTGATGGACTTCA+AGG | 0.467889 | 4_2:-55059820 | Msa0608050:CDS |
| TTGCTGTGCTTGAAATTAAG+TGG | 0.472270 | 4_2:-55058979 | Msa0608050:CDS |
| AGAAAACACCTCCTAGTAAC+CGG | 0.477643 | 4_2:+55058660 | None:intergenic |
| TCAATACCCTCAAACCTTTG+AGG | 0.479344 | 4_2:+55059895 | None:intergenic |
| CAGGTTCTTAGATGGGCTAC+TGG | 0.479590 | 4_2:-55059235 | Msa0608050:CDS |
| CAGCCGGTTCCTACATAGAC+TGG | 0.480738 | 4_2:+55059796 | None:intergenic |
| CTCCCATCAATCTCACTGAT+AGG | 0.482130 | 4_2:-55059264 | Msa0608050:CDS |
| TCTCACTGATAGGTTGCATC+AGG | 0.486920 | 4_2:-55059254 | Msa0608050:CDS |
| CTACCTTGGAACTGTGCCAC+TGG | 0.489823 | 4_2:+55059550 | None:intergenic |
| CAACCTATCAGTGAGATTGA+TGG | 0.492695 | 4_2:+55059261 | None:intergenic |
| CAATTCCCTCAAAGGTTTGA+GGG | 0.496074 | 4_2:-55059901 | Msa0608050:CDS |
| AGAGAACAGGGCACTAAGGA+TGG | 0.496324 | 4_2:-55059656 | Msa0608050:CDS |
| CAATACCCTCAAACCTTTGA+GGG | 0.496350 | 4_2:+55059896 | None:intergenic |
| CCAATTCCCTCAAAGGTTTG+AGG | 0.503080 | 4_2:-55059902 | Msa0608050:CDS |
| TACAATTGGTGGTATCATAA+GGG | 0.503244 | 4_2:+55058757 | None:intergenic |
| AGGATAGCATACCTTAATGT+TGG | 0.504124 | 4_2:-55059145 | Msa0608050:CDS |
| GTTACTGAGGATGTGGTCAC+TGG | 0.513628 | 4_2:-55059358 | Msa0608050:CDS |
| TAGTGCCCTGTTCTCTTCTG+AGG | 0.517277 | 4_2:+55059663 | None:intergenic |
| CGAGGTATAGTGAGAGCACC+AGG | 0.517290 | 4_2:+55059487 | None:intergenic |
| TGTGATTTCATGTTGGTATG+AGG | 0.522119 | 4_2:-55059425 | Msa0608050:CDS |
| GATCAGCAAGTGGCCTACCT+TGG | 0.525030 | 4_2:+55059536 | None:intergenic |
| CCAGAGAAGAGGGACAGTGC+AGG | 0.528514 | 4_2:+55059076 | None:intergenic |
| GAATGCATTGGTTAGAGCCT+CGG | 0.531865 | 4_2:-55060049 | Msa0608050:CDS |
| AGAAGAGGGACAGTGCAGGC+AGG | 0.535477 | 4_2:+55059080 | None:intergenic |
| TGGATCAGTTACTGAGGATG+TGG | 0.535501 | 4_2:-55059365 | Msa0608050:CDS |
| GGAAGGTATGTGCTTTATGA+TGG | 0.536478 | 4_2:-55059953 | Msa0608050:CDS |
| ACCATCATGATTACAATTGG+TGG | 0.537501 | 4_2:+55058746 | None:intergenic |
| CAGAAGAGAACAGGGCACTA+AGG | 0.537635 | 4_2:-55059660 | Msa0608050:CDS |
| CTGATCTGTATATTGTCAAA+TGG | 0.537846 | 4_2:-55058784 | Msa0608050:CDS |
| AACTTAATAGGAATAGCTGT+TGG | 0.540597 | 4_2:-55058722 | Msa0608050:CDS |
| CTGGGCCTTGAAGTCCATCA+AGG | 0.544862 | 4_2:+55059815 | None:intergenic |
| AACCTATCAGTGAGATTGAT+GGG | 0.545416 | 4_2:+55059262 | None:intergenic |
| GAAGAATGAAATTTCTTCAG+AGG | 0.551800 | 4_2:-55059165 | Msa0608050:CDS |
| TAACCGGCTCCACTGTGGTA+TGG | 0.552785 | 4_2:+55058676 | None:intergenic |
| GTTGCATCAGGTTCTTAGAT+GGG | 0.553071 | 4_2:-55059242 | Msa0608050:CDS |
| AGTTGGGGCCATGAATGCAT+TGG | 0.554153 | 4_2:-55060061 | None:intergenic |
| GCTATGTCCAATTCCCTCAA+AGG | 0.554919 | 4_2:-55059909 | Msa0608050:CDS |
| CAGGAATTGAGCTGGAAGAA+TGG | 0.555011 | 4_2:-55058955 | Msa0608050:CDS |
| CTTCAAGGCCCAGTCTATGT+AGG | 0.559242 | 4_2:-55059805 | Msa0608050:CDS |
| CAATGAACTGTCCAGAGAAG+AGG | 0.562988 | 4_2:+55059065 | None:intergenic |
| GTTAAGTATAAAAGGACCGT+TGG | 0.563607 | 4_2:+55060017 | None:intergenic |
| GGTTATAGGATGCATAATAG+AGG | 0.564782 | 4_2:-55059337 | Msa0608050:CDS |
| ATATAACTCCAAAGCAATGA+GGG | 0.569533 | 4_2:-55059974 | Msa0608050:CDS |
| TAAGTGGCCAGGAATTGAGC+TGG | 0.572097 | 4_2:-55058963 | Msa0608050:CDS |
| GCACGGTCTTCTTTGGCGCG+TGG | 0.573788 | 4_2:+55059736 | None:intergenic |
| GTACCATACCACAGTGGAGC+CGG | 0.578048 | 4_2:-55058679 | Msa0608050:CDS |
| ATAGGATGCATAATAGAGGA+TGG | 0.578268 | 4_2:-55059333 | Msa0608050:CDS |
| GATGGGAGCAGTTCCGCGGA+AGG | 0.581406 | 4_2:+55059279 | None:intergenic |
| AAGAAATTTCATTCTTCGGG+TGG | 0.585093 | 4_2:+55059171 | None:intergenic |
| AATGAACTGTCCAGAGAAGA+GGG | 0.585838 | 4_2:+55059066 | None:intergenic |
| ATTCCAGTGGCACAGTTCCA+AGG | 0.587403 | 4_2:-55059553 | Msa0608050:CDS |
| GCCTCGGCTGTCATGTCCAA+CGG | 0.589027 | 4_2:-55060033 | Msa0608050:CDS |
| ACTAAACGCGACGCCTTCCG+CGG | 0.591532 | 4_2:-55059292 | Msa0608050:CDS |
| CGGTCTTCTTTGGCGCGTGG+AGG | 0.595850 | 4_2:+55059739 | None:intergenic |
| TATATAACTCCAAAGCAATG+AGG | 0.595884 | 4_2:-55059975 | Msa0608050:CDS |
| GAGAACAGGGCACTAAGGAT+GGG | 0.596261 | 4_2:-55059655 | Msa0608050:CDS |
| GTGCTTGAAATTAAGTGGCC+AGG | 0.596691 | 4_2:-55058974 | Msa0608050:CDS |
| AACTCCAAAGCAATGAGGGA+AGG | 0.600336 | 4_2:-55059970 | Msa0608050:CDS |
| CCATCAGTGTGATTTCATGT+TGG | 0.602601 | 4_2:-55059432 | Msa0608050:CDS |
| CCAACATGAAATCACACTGA+TGG | 0.603494 | 4_2:+55059432 | None:intergenic |
| CAGTGGCACAGTTCCAAGGT+AGG | 0.604559 | 4_2:-55059549 | Msa0608050:CDS |
| AGTGGGGACAGCGTGTTGGA+TGG | 0.609266 | 4_2:-55059393 | Msa0608050:CDS |
| GTGATTAGCATATCTATCAG+AGG | 0.610027 | 4_2:+55059870 | None:intergenic |
| ACCTTGACTTCAAAATCTGG+CGG | 0.612483 | 4_2:-55058830 | Msa0608050:CDS |
| AGCCGGTTCCTACATAGACT+GGG | 0.616227 | 4_2:+55059797 | None:intergenic |
| ACTGAGTGGGGACAGCGTGT+TGG | 0.616731 | 4_2:-55059397 | Msa0608050:CDS |
| TGGGCCTTGAAGTCCATCAA+GGG | 0.617779 | 4_2:+55059816 | None:intergenic |
| GTATGAGGACAAGACTGAGT+GGG | 0.618939 | 4_2:-55059410 | Msa0608050:CDS |
| AAACCTTCTAAACAGACAGC+CGG | 0.619310 | 4_2:+55059780 | None:intergenic |
| TTTGAGTAAACCTTGAAGCA+CGG | 0.620499 | 4_2:+55058880 | None:intergenic |
| GAATTGAGCTGGAAGAATGG+TGG | 0.621397 | 4_2:-55058952 | Msa0608050:CDS |
| CCTTATTGACTCAATTCCAG+TGG | 0.630704 | 4_2:-55059566 | Msa0608050:CDS |
| TGATTAGCATATCTATCAGA+GGG | 0.632288 | 4_2:+55059871 | None:intergenic |
| GAGGGAATTGGACATAGCAG+AGG | 0.637180 | 4_2:+55059914 | None:intergenic |
| ACCACCAATTGTAATCATGA+TGG | 0.637448 | 4_2:-55058747 | Msa0608050:CDS |
| CAACACCTCAGAAGAGAACA+GGG | 0.642386 | 4_2:-55059668 | Msa0608050:CDS |
| ATATATAGTGATCACAGTCG+AGG | 0.658364 | 4_2:+55059995 | None:intergenic |
| GATTGATGGGAGCAGTTCCG+CGG | 0.664180 | 4_2:+55059275 | None:intergenic |
| ACAGCAGGATGATCAGCAAG+TGG | 0.664216 | 4_2:+55059526 | None:intergenic |
| GATGCATCAAGCAGCTCACG+AGG | 0.667606 | 4_2:+55059469 | None:intergenic |
| AACAACTACAGAAAGATGCA+CGG | 0.675057 | 4_2:+55059719 | None:intergenic |
| CAGTGGAGCCGGTTACTAGG+AGG | 0.676084 | 4_2:-55058668 | Msa0608050:CDS |
| ACCGTTGGACATGACAGCCG+AGG | 0.677629 | 4_2:+55060032 | None:intergenic |
| GATCTATGGATCAGTTACTG+AGG | 0.682987 | 4_2:-55059371 | Msa0608050:CDS |
| GTGTCACAGTAATAGCCAAG+AGG | 0.689192 | 4_2:+55059011 | None:intergenic |
| ATGTGCTTTATGATGGATCG+TGG | 0.700304 | 4_2:-55059946 | Msa0608050:CDS |
| TATGAGGACAAGACTGAGTG+GGG | 0.705596 | 4_2:-55059409 | Msa0608050:CDS |
| GCTGCTTGATGCATCAACTG+TGG | 0.710663 | 4_2:-55059461 | Msa0608050:CDS |
| CCTAGTAACCGGCTCCACTG+TGG | 0.726079 | 4_2:+55058671 | None:intergenic |
| TGCTTTATGATGGATCGTGG+TGG | 0.732320 | 4_2:-55059943 | Msa0608050:CDS |
| GGTATGAGGACAAGACTGAG+TGG | 0.734815 | 4_2:-55059411 | Msa0608050:CDS |
| GGTATAGTGAGAGCACCAGG+AGG | 0.763552 | 4_2:+55059490 | None:intergenic |
| TATACAGTACCATACCACAG+TGG | 0.801436 | 4_2:-55058685 | Msa0608050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTCTAAAAACAATGCAATTA+TGG | - | chr4_2:55059506-55059525 | Msa0608050:CDS | 25.0% |
| ! | TCTGAAGAAATTTCATTCTT+CGG | + | chr4_2:55059536-55059555 | None:intergenic | 25.0% |
| ! | ATGGATAAATTCCAACATTA+AGG | + | chr4_2:55059569-55059588 | None:intergenic | 25.0% |
| ! | ATAAGAAAAAACGAAGTGAA+TGG | + | chr4_2:55059588-55059607 | None:intergenic | 25.0% |
| !! | CTCTAAAAACAATGCAATTA+TGG | - | chr4_2:55059506-55059525 | Msa0608050:CDS | 25.0% |
| ! | TCTGAAGAAATTTCATTCTT+CGG | + | chr4_2:55059536-55059555 | None:intergenic | 25.0% |
| ! | ATGGATAAATTCCAACATTA+AGG | + | chr4_2:55059569-55059588 | None:intergenic | 25.0% |
| ! | ATAAGAAAAAACGAAGTGAA+TGG | + | chr4_2:55059588-55059607 | None:intergenic | 25.0% |
| TATATAACTCCAAAGCAATG+AGG | - | chr4_2:55058725-55058744 | Msa0608050:CDS | 30.0% | |
| ATATAACTCCAAAGCAATGA+GGG | - | chr4_2:55058726-55058745 | Msa0608050:CDS | 30.0% | |
| TGATTAGCATATCTATCAGA+GGG | + | chr4_2:55058832-55058851 | None:intergenic | 30.0% | |
| ! | TTTAGAAGGTTTGCTCTTTA+TGG | - | chr4_2:55058931-55058950 | Msa0608050:CDS | 30.0% |
| TCACAATTCTCGAAGAAATT+TGG | - | chr4_2:55059099-55059118 | Msa0608050:CDS | 30.0% | |
| CACAATTCTCGAAGAAATTT+GGG | - | chr4_2:55059100-55059119 | Msa0608050:CDS | 30.0% | |
| CTGAAGAAATTTCATTCTTC+GGG | + | chr4_2:55059535-55059554 | None:intergenic | 30.0% | |
| GAAGAATGAAATTTCTTCAG+AGG | - | chr4_2:55059535-55059554 | Msa0608050:CDS | 30.0% | |
| AAAAAGTGACATCAAGAGTT+TGG | + | chr4_2:55059662-55059681 | None:intergenic | 30.0% | |
| !!! | AACTCTTGATGTCACTTTTT+TGG | - | chr4_2:55059662-55059681 | Msa0608050:CDS | 30.0% |
| CTGATCTGTATATTGTCAAA+TGG | - | chr4_2:55059916-55059935 | Msa0608050:CDS | 30.0% | |
| ! | TACAATTGGTGGTATCATAA+GGG | + | chr4_2:55059946-55059965 | None:intergenic | 30.0% |
| ! | TTACAATTGGTGGTATCATA+AGG | + | chr4_2:55059947-55059966 | None:intergenic | 30.0% |
| TTCACCATCATGATTACAAT+TGG | + | chr4_2:55059960-55059979 | None:intergenic | 30.0% | |
| ! | ATCATGATGGTGAACTTAAT+AGG | - | chr4_2:55059966-55059985 | Msa0608050:CDS | 30.0% |
| AACTTAATAGGAATAGCTGT+TGG | - | chr4_2:55059978-55059997 | Msa0608050:CDS | 30.0% | |
| TATATAACTCCAAAGCAATG+AGG | - | chr4_2:55058725-55058744 | Msa0608050:CDS | 30.0% | |
| ATATAACTCCAAAGCAATGA+GGG | - | chr4_2:55058726-55058745 | Msa0608050:CDS | 30.0% | |
| TGATTAGCATATCTATCAGA+GGG | + | chr4_2:55058832-55058851 | None:intergenic | 30.0% | |
| ! | TTTAGAAGGTTTGCTCTTTA+TGG | - | chr4_2:55058931-55058950 | Msa0608050:CDS | 30.0% |
| TCACAATTCTCGAAGAAATT+TGG | - | chr4_2:55059099-55059118 | Msa0608050:CDS | 30.0% | |
| CACAATTCTCGAAGAAATTT+GGG | - | chr4_2:55059100-55059119 | Msa0608050:CDS | 30.0% | |
| CTGAAGAAATTTCATTCTTC+GGG | + | chr4_2:55059535-55059554 | None:intergenic | 30.0% | |
| GAAGAATGAAATTTCTTCAG+AGG | - | chr4_2:55059535-55059554 | Msa0608050:CDS | 30.0% | |
| AAAAAGTGACATCAAGAGTT+TGG | + | chr4_2:55059662-55059681 | None:intergenic | 30.0% | |
| !!! | AACTCTTGATGTCACTTTTT+TGG | - | chr4_2:55059662-55059681 | Msa0608050:CDS | 30.0% |
| CTGATCTGTATATTGTCAAA+TGG | - | chr4_2:55059916-55059935 | Msa0608050:CDS | 30.0% | |
| ! | TACAATTGGTGGTATCATAA+GGG | + | chr4_2:55059946-55059965 | None:intergenic | 30.0% |
| ! | TTACAATTGGTGGTATCATA+AGG | + | chr4_2:55059947-55059966 | None:intergenic | 30.0% |
| TTCACCATCATGATTACAAT+TGG | + | chr4_2:55059960-55059979 | None:intergenic | 30.0% | |
| ! | ATCATGATGGTGAACTTAAT+AGG | - | chr4_2:55059966-55059985 | Msa0608050:CDS | 30.0% |
| AACTTAATAGGAATAGCTGT+TGG | - | chr4_2:55059978-55059997 | Msa0608050:CDS | 30.0% | |
| GTTAAGTATAAAAGGACCGT+TGG | + | chr4_2:55058686-55058705 | None:intergenic | 35.0% | |
| CAGTCGAGGTTAAGTATAAA+AGG | + | chr4_2:55058694-55058713 | None:intergenic | 35.0% | |
| ATATATAGTGATCACAGTCG+AGG | + | chr4_2:55058708-55058727 | None:intergenic | 35.0% | |
| GTGATTAGCATATCTATCAG+AGG | + | chr4_2:55058833-55058852 | None:intergenic | 35.0% | |
| AACAACTACAGAAAGATGCA+CGG | + | chr4_2:55058984-55059003 | None:intergenic | 35.0% | |
| ! | TCTTTCTGTAGTTGTTGCTT+TGG | - | chr4_2:55058988-55059007 | Msa0608050:CDS | 35.0% |
| !! | CTTTCTGTAGTTGTTGCTTT+GGG | - | chr4_2:55058989-55059008 | Msa0608050:CDS | 35.0% |
| TGTGATTTCATGTTGGTATG+AGG | - | chr4_2:55059275-55059294 | Msa0608050:CDS | 35.0% | |
| GGTTATAGGATGCATAATAG+AGG | - | chr4_2:55059363-55059382 | Msa0608050:CDS | 35.0% | |
| ATAGGATGCATAATAGAGGA+TGG | - | chr4_2:55059367-55059386 | Msa0608050:CDS | 35.0% | |
| AACCTATCAGTGAGATTGAT+GGG | + | chr4_2:55059441-55059460 | None:intergenic | 35.0% | |
| AAGAAATTTCATTCTTCGGG+TGG | + | chr4_2:55059532-55059551 | None:intergenic | 35.0% | |
| AGGATAGCATACCTTAATGT+TGG | - | chr4_2:55059555-55059574 | Msa0608050:CDS | 35.0% | |
| TTGCTGTGCTTGAAATTAAG+TGG | - | chr4_2:55059721-55059740 | Msa0608050:CDS | 35.0% | |
| !!! | AATGAGCAGTTTTGGTTGAT+TGG | - | chr4_2:55059774-55059793 | Msa0608050:CDS | 35.0% |
| TTTGAGTAAACCTTGAAGCA+CGG | + | chr4_2:55059823-55059842 | None:intergenic | 35.0% | |
| TTCACCTTGACTTCAAAATC+TGG | - | chr4_2:55059867-55059886 | Msa0608050:CDS | 35.0% | |
| ACCACCAATTGTAATCATGA+TGG | - | chr4_2:55059953-55059972 | Msa0608050:CDS | 35.0% | |
| ACCATCATGATTACAATTGG+TGG | + | chr4_2:55059957-55059976 | None:intergenic | 35.0% | |
| GTTAAGTATAAAAGGACCGT+TGG | + | chr4_2:55058686-55058705 | None:intergenic | 35.0% | |
| CAGTCGAGGTTAAGTATAAA+AGG | + | chr4_2:55058694-55058713 | None:intergenic | 35.0% | |
| ATATATAGTGATCACAGTCG+AGG | + | chr4_2:55058708-55058727 | None:intergenic | 35.0% | |
| GTGATTAGCATATCTATCAG+AGG | + | chr4_2:55058833-55058852 | None:intergenic | 35.0% | |
| AACAACTACAGAAAGATGCA+CGG | + | chr4_2:55058984-55059003 | None:intergenic | 35.0% | |
| ! | TCTTTCTGTAGTTGTTGCTT+TGG | - | chr4_2:55058988-55059007 | Msa0608050:CDS | 35.0% |
| !! | CTTTCTGTAGTTGTTGCTTT+GGG | - | chr4_2:55058989-55059008 | Msa0608050:CDS | 35.0% |
| TGTGATTTCATGTTGGTATG+AGG | - | chr4_2:55059275-55059294 | Msa0608050:CDS | 35.0% | |
| GGTTATAGGATGCATAATAG+AGG | - | chr4_2:55059363-55059382 | Msa0608050:CDS | 35.0% | |
| ATAGGATGCATAATAGAGGA+TGG | - | chr4_2:55059367-55059386 | Msa0608050:CDS | 35.0% | |
| AACCTATCAGTGAGATTGAT+GGG | + | chr4_2:55059441-55059460 | None:intergenic | 35.0% | |
| AAGAAATTTCATTCTTCGGG+TGG | + | chr4_2:55059532-55059551 | None:intergenic | 35.0% | |
| AGGATAGCATACCTTAATGT+TGG | - | chr4_2:55059555-55059574 | Msa0608050:CDS | 35.0% | |
| TTGCTGTGCTTGAAATTAAG+TGG | - | chr4_2:55059721-55059740 | Msa0608050:CDS | 35.0% | |
| !!! | AATGAGCAGTTTTGGTTGAT+TGG | - | chr4_2:55059774-55059793 | Msa0608050:CDS | 35.0% |
| TTTGAGTAAACCTTGAAGCA+CGG | + | chr4_2:55059823-55059842 | None:intergenic | 35.0% | |
| TTCACCTTGACTTCAAAATC+TGG | - | chr4_2:55059867-55059886 | Msa0608050:CDS | 35.0% | |
| ACCACCAATTGTAATCATGA+TGG | - | chr4_2:55059953-55059972 | Msa0608050:CDS | 35.0% | |
| ACCATCATGATTACAATTGG+TGG | + | chr4_2:55059957-55059976 | None:intergenic | 35.0% | |
| ! | GGAAGGTATGTGCTTTATGA+TGG | - | chr4_2:55058747-55058766 | Msa0608050:CDS | 40.0% |
| !! | ATGTGCTTTATGATGGATCG+TGG | - | chr4_2:55058754-55058773 | Msa0608050:CDS | 40.0% |
| CAATTCCCTCAAAGGTTTGA+GGG | - | chr4_2:55058799-55058818 | Msa0608050:CDS | 40.0% | |
| CAATACCCTCAAACCTTTGA+GGG | + | chr4_2:55058807-55058826 | None:intergenic | 40.0% | |
| TCAATACCCTCAAACCTTTG+AGG | + | chr4_2:55058808-55058827 | None:intergenic | 40.0% | |
| AAACCTTCTAAACAGACAGC+CGG | + | chr4_2:55058923-55058942 | None:intergenic | 40.0% | |
| CCACTGGAATTGAGTCAATA+AGG | + | chr4_2:55059137-55059156 | None:intergenic | 40.0% | |
| !! | CCTTATTGACTCAATTCCAG+TGG | - | chr4_2:55059134-55059153 | Msa0608050:CDS | 40.0% |
| GATCATCCTGCTGTGAAAAA+TGG | - | chr4_2:55059183-55059202 | Msa0608050:CDS | 40.0% | |
| CCAACATGAAATCACACTGA+TGG | + | chr4_2:55059271-55059290 | None:intergenic | 40.0% | |
| CCATCAGTGTGATTTCATGT+TGG | - | chr4_2:55059268-55059287 | Msa0608050:CDS | 40.0% | |
| GATCTATGGATCAGTTACTG+AGG | - | chr4_2:55059329-55059348 | Msa0608050:CDS | 40.0% | |
| CAACCTATCAGTGAGATTGA+TGG | + | chr4_2:55059442-55059461 | None:intergenic | 40.0% | |
| GTTGCATCAGGTTCTTAGAT+GGG | - | chr4_2:55059458-55059477 | Msa0608050:CDS | 40.0% | |
| AATGAACTGTCCAGAGAAGA+GGG | + | chr4_2:55059637-55059656 | None:intergenic | 40.0% | |
| !!! | CACTTTTTTGGCTTACCTCT+TGG | - | chr4_2:55059674-55059693 | Msa0608050:CDS | 40.0% |
| !!! | AGCAGTTTTGGTTGATTGGA+GGG | - | chr4_2:55059778-55059797 | Msa0608050:CDS | 40.0% |
| ACCTTGACTTCAAAATCTGG+CGG | - | chr4_2:55059870-55059889 | Msa0608050:CDS | 40.0% | |
| TATACAGTACCATACCACAG+TGG | - | chr4_2:55060015-55060034 | Msa0608050:CDS | 40.0% | |
| AGAAAACACCTCCTAGTAAC+CGG | + | chr4_2:55060043-55060062 | None:intergenic | 40.0% | |
| ! | GGAAGGTATGTGCTTTATGA+TGG | - | chr4_2:55058747-55058766 | Msa0608050:CDS | 40.0% |
| !! | ATGTGCTTTATGATGGATCG+TGG | - | chr4_2:55058754-55058773 | Msa0608050:CDS | 40.0% |
| CAATTCCCTCAAAGGTTTGA+GGG | - | chr4_2:55058799-55058818 | Msa0608050:CDS | 40.0% | |
| CAATACCCTCAAACCTTTGA+GGG | + | chr4_2:55058807-55058826 | None:intergenic | 40.0% | |
| TCAATACCCTCAAACCTTTG+AGG | + | chr4_2:55058808-55058827 | None:intergenic | 40.0% | |
| AAACCTTCTAAACAGACAGC+CGG | + | chr4_2:55058923-55058942 | None:intergenic | 40.0% | |
| CCACTGGAATTGAGTCAATA+AGG | + | chr4_2:55059137-55059156 | None:intergenic | 40.0% | |
| !! | CCTTATTGACTCAATTCCAG+TGG | - | chr4_2:55059134-55059153 | Msa0608050:CDS | 40.0% |
| GATCATCCTGCTGTGAAAAA+TGG | - | chr4_2:55059183-55059202 | Msa0608050:CDS | 40.0% | |
| CCAACATGAAATCACACTGA+TGG | + | chr4_2:55059271-55059290 | None:intergenic | 40.0% | |
| CCATCAGTGTGATTTCATGT+TGG | - | chr4_2:55059268-55059287 | Msa0608050:CDS | 40.0% | |
| GATCTATGGATCAGTTACTG+AGG | - | chr4_2:55059329-55059348 | Msa0608050:CDS | 40.0% | |
| CAACCTATCAGTGAGATTGA+TGG | + | chr4_2:55059442-55059461 | None:intergenic | 40.0% | |
| GTTGCATCAGGTTCTTAGAT+GGG | - | chr4_2:55059458-55059477 | Msa0608050:CDS | 40.0% | |
| AATGAACTGTCCAGAGAAGA+GGG | + | chr4_2:55059637-55059656 | None:intergenic | 40.0% | |
| !!! | CACTTTTTTGGCTTACCTCT+TGG | - | chr4_2:55059674-55059693 | Msa0608050:CDS | 40.0% |
| !!! | AGCAGTTTTGGTTGATTGGA+GGG | - | chr4_2:55059778-55059797 | Msa0608050:CDS | 40.0% |
| ACCTTGACTTCAAAATCTGG+CGG | - | chr4_2:55059870-55059889 | Msa0608050:CDS | 40.0% | |
| TATACAGTACCATACCACAG+TGG | - | chr4_2:55060015-55060034 | Msa0608050:CDS | 40.0% | |
| AGAAAACACCTCCTAGTAAC+CGG | + | chr4_2:55060043-55060062 | None:intergenic | 40.0% | |
| !! | GAATGCATTGGTTAGAGCCT+CGG | - | chr4_2:55058651-55058670 | Msa0608050:CDS | 45.0% |
| AACTCCAAAGCAATGAGGGA+AGG | - | chr4_2:55058730-55058749 | Msa0608050:CDS | 45.0% | |
| CATACCTTCCCTCATTGCTT+TGG | + | chr4_2:55058737-55058756 | None:intergenic | 45.0% | |
| !! | TGCTTTATGATGGATCGTGG+TGG | - | chr4_2:55058757-55058776 | Msa0608050:CDS | 45.0% |
| GCTATGTCCAATTCCCTCAA+AGG | - | chr4_2:55058791-55058810 | Msa0608050:CDS | 45.0% | |
| ! | CCTCAAACCTTTGAGGGAAT+TGG | + | chr4_2:55058801-55058820 | None:intergenic | 45.0% |
| CCAATTCCCTCAAAGGTTTG+AGG | - | chr4_2:55058798-55058817 | Msa0608050:CDS | 45.0% | |
| GTTAACATGAGAGCCCTTGA+TGG | - | chr4_2:55058871-55058890 | Msa0608050:CDS | 45.0% | |
| GAAAGATGCACGGTCTTCTT+TGG | + | chr4_2:55058974-55058993 | None:intergenic | 45.0% | |
| CAACACCTCAGAAGAGAACA+GGG | - | chr4_2:55059032-55059051 | Msa0608050:CDS | 45.0% | |
| GTATGAGGACAAGACTGAGT+GGG | - | chr4_2:55059290-55059309 | Msa0608050:CDS | 45.0% | |
| TATGAGGACAAGACTGAGTG+GGG | - | chr4_2:55059291-55059310 | Msa0608050:CDS | 45.0% | |
| TGGATCAGTTACTGAGGATG+TGG | - | chr4_2:55059335-55059354 | Msa0608050:CDS | 45.0% | |
| ! | AGGATGTGGTCACTGGTTAT+AGG | - | chr4_2:55059349-55059368 | Msa0608050:CDS | 45.0% |
| CTCCCATCAATCTCACTGAT+AGG | - | chr4_2:55059436-55059455 | Msa0608050:CDS | 45.0% | |
| TCTCACTGATAGGTTGCATC+AGG | - | chr4_2:55059446-55059465 | Msa0608050:CDS | 45.0% | |
| GGTTGCATCAGGTTCTTAGA+TGG | - | chr4_2:55059457-55059476 | Msa0608050:CDS | 45.0% | |
| CAATGAACTGTCCAGAGAAG+AGG | + | chr4_2:55059638-55059657 | None:intergenic | 45.0% | |
| GTGTCACAGTAATAGCCAAG+AGG | + | chr4_2:55059692-55059711 | None:intergenic | 45.0% | |
| GTGCTTGAAATTAAGTGGCC+AGG | - | chr4_2:55059726-55059745 | Msa0608050:CDS | 45.0% | |
| CATTCTTCCAGCTCAATTCC+TGG | + | chr4_2:55059747-55059766 | None:intergenic | 45.0% | |
| CAGGAATTGAGCTGGAAGAA+TGG | - | chr4_2:55059745-55059764 | Msa0608050:CDS | 45.0% | |
| GAATTGAGCTGGAAGAATGG+TGG | - | chr4_2:55059748-55059767 | Msa0608050:CDS | 45.0% | |
| ! | GGTGGAGAAATGAGCAGTTT+TGG | - | chr4_2:55059766-55059785 | Msa0608050:CDS | 45.0% |
| !!! | GAGCAGTTTTGGTTGATTGG+AGG | - | chr4_2:55059777-55059796 | Msa0608050:CDS | 45.0% |
| GGTTTACTCAAAGTCGTTGC+AGG | - | chr4_2:55059831-55059850 | Msa0608050:CDS | 45.0% | |
| !!! | ACCGCCAGATTTTGAAGTCA+AGG | + | chr4_2:55059874-55059893 | None:intergenic | 45.0% |
| !! | GAATGCATTGGTTAGAGCCT+CGG | - | chr4_2:55058651-55058670 | Msa0608050:CDS | 45.0% |
| AACTCCAAAGCAATGAGGGA+AGG | - | chr4_2:55058730-55058749 | Msa0608050:CDS | 45.0% | |
| CATACCTTCCCTCATTGCTT+TGG | + | chr4_2:55058737-55058756 | None:intergenic | 45.0% | |
| !! | TGCTTTATGATGGATCGTGG+TGG | - | chr4_2:55058757-55058776 | Msa0608050:CDS | 45.0% |
| GCTATGTCCAATTCCCTCAA+AGG | - | chr4_2:55058791-55058810 | Msa0608050:CDS | 45.0% | |
| ! | CCTCAAACCTTTGAGGGAAT+TGG | + | chr4_2:55058801-55058820 | None:intergenic | 45.0% |
| CCAATTCCCTCAAAGGTTTG+AGG | - | chr4_2:55058798-55058817 | Msa0608050:CDS | 45.0% | |
| GTTAACATGAGAGCCCTTGA+TGG | - | chr4_2:55058871-55058890 | Msa0608050:CDS | 45.0% | |
| GAAAGATGCACGGTCTTCTT+TGG | + | chr4_2:55058974-55058993 | None:intergenic | 45.0% | |
| CAACACCTCAGAAGAGAACA+GGG | - | chr4_2:55059032-55059051 | Msa0608050:CDS | 45.0% | |
| GTATGAGGACAAGACTGAGT+GGG | - | chr4_2:55059290-55059309 | Msa0608050:CDS | 45.0% | |
| TATGAGGACAAGACTGAGTG+GGG | - | chr4_2:55059291-55059310 | Msa0608050:CDS | 45.0% | |
| TGGATCAGTTACTGAGGATG+TGG | - | chr4_2:55059335-55059354 | Msa0608050:CDS | 45.0% | |
| ! | AGGATGTGGTCACTGGTTAT+AGG | - | chr4_2:55059349-55059368 | Msa0608050:CDS | 45.0% |
| CTCCCATCAATCTCACTGAT+AGG | - | chr4_2:55059436-55059455 | Msa0608050:CDS | 45.0% | |
| TCTCACTGATAGGTTGCATC+AGG | - | chr4_2:55059446-55059465 | Msa0608050:CDS | 45.0% | |
| GGTTGCATCAGGTTCTTAGA+TGG | - | chr4_2:55059457-55059476 | Msa0608050:CDS | 45.0% | |
| CAATGAACTGTCCAGAGAAG+AGG | + | chr4_2:55059638-55059657 | None:intergenic | 45.0% | |
| GTGTCACAGTAATAGCCAAG+AGG | + | chr4_2:55059692-55059711 | None:intergenic | 45.0% | |
| GTGCTTGAAATTAAGTGGCC+AGG | - | chr4_2:55059726-55059745 | Msa0608050:CDS | 45.0% | |
| CATTCTTCCAGCTCAATTCC+TGG | + | chr4_2:55059747-55059766 | None:intergenic | 45.0% | |
| CAGGAATTGAGCTGGAAGAA+TGG | - | chr4_2:55059745-55059764 | Msa0608050:CDS | 45.0% | |
| GAATTGAGCTGGAAGAATGG+TGG | - | chr4_2:55059748-55059767 | Msa0608050:CDS | 45.0% | |
| ! | GGTGGAGAAATGAGCAGTTT+TGG | - | chr4_2:55059766-55059785 | Msa0608050:CDS | 45.0% |
| !!! | GAGCAGTTTTGGTTGATTGG+AGG | - | chr4_2:55059777-55059796 | Msa0608050:CDS | 45.0% |
| GGTTTACTCAAAGTCGTTGC+AGG | - | chr4_2:55059831-55059850 | Msa0608050:CDS | 45.0% | |
| !!! | ACCGCCAGATTTTGAAGTCA+AGG | + | chr4_2:55059874-55059893 | None:intergenic | 45.0% |
| GAGGGAATTGGACATAGCAG+AGG | + | chr4_2:55058789-55058808 | None:intergenic | 50.0% | |
| !! | AGAGCCCTTGATGGACTTCA+AGG | - | chr4_2:55058880-55058899 | Msa0608050:CDS | 50.0% |
| TGGGCCTTGAAGTCCATCAA+GGG | + | chr4_2:55058887-55058906 | None:intergenic | 50.0% | |
| CTTCAAGGCCCAGTCTATGT+AGG | - | chr4_2:55058895-55058914 | Msa0608050:CDS | 50.0% | |
| ! | AGCCGGTTCCTACATAGACT+GGG | + | chr4_2:55058906-55058925 | None:intergenic | 50.0% |
| GAACCGGCTGTCTGTTTAGA+AGG | - | chr4_2:55058917-55058936 | Msa0608050:CDS | 50.0% | |
| !! | CCTGTTCTCTTCTGAGGTGT+TGG | + | chr4_2:55059034-55059053 | None:intergenic | 50.0% |
| CCAACACCTCAGAAGAGAAC+AGG | - | chr4_2:55059031-55059050 | Msa0608050:CDS | 50.0% | |
| TAGTGCCCTGTTCTCTTCTG+AGG | + | chr4_2:55059040-55059059 | None:intergenic | 50.0% | |
| ! | CAGAAGAGAACAGGGCACTA+AGG | - | chr4_2:55059040-55059059 | Msa0608050:CDS | 50.0% |
| ! | AGAGAACAGGGCACTAAGGA+TGG | - | chr4_2:55059044-55059063 | Msa0608050:CDS | 50.0% |
| ! | GAGAACAGGGCACTAAGGAT+GGG | - | chr4_2:55059045-55059064 | Msa0608050:CDS | 50.0% |
| ATTCCAGTGGCACAGTTCCA+AGG | - | chr4_2:55059147-55059166 | Msa0608050:CDS | 50.0% | |
| ACAGCAGGATGATCAGCAAG+TGG | + | chr4_2:55059177-55059196 | None:intergenic | 50.0% | |
| !! | GGTCGTCCATTTTTCACAGC+AGG | + | chr4_2:55059192-55059211 | None:intergenic | 50.0% |
| GTGAAAAATGGACGACCTCC+TGG | - | chr4_2:55059195-55059214 | Msa0608050:CDS | 50.0% | |
| GCTGCTTGATGCATCAACTG+TGG | - | chr4_2:55059239-55059258 | Msa0608050:CDS | 50.0% | |
| GGTATGAGGACAAGACTGAG+TGG | - | chr4_2:55059289-55059308 | Msa0608050:CDS | 50.0% | |
| CAGCGTGTTGGATGGATCTA+TGG | - | chr4_2:55059315-55059334 | Msa0608050:CDS | 50.0% | |
| GTTACTGAGGATGTGGTCAC+TGG | - | chr4_2:55059342-55059361 | Msa0608050:CDS | 50.0% | |
| !! | CAGGTTCTTAGATGGGCTAC+TGG | - | chr4_2:55059465-55059484 | Msa0608050:CDS | 50.0% |
| TAAGTGGCCAGGAATTGAGC+TGG | - | chr4_2:55059737-55059756 | Msa0608050:CDS | 50.0% | |
| GAGGGAATTGGACATAGCAG+AGG | + | chr4_2:55058789-55058808 | None:intergenic | 50.0% | |
| !! | AGAGCCCTTGATGGACTTCA+AGG | - | chr4_2:55058880-55058899 | Msa0608050:CDS | 50.0% |
| TGGGCCTTGAAGTCCATCAA+GGG | + | chr4_2:55058887-55058906 | None:intergenic | 50.0% | |
| CTTCAAGGCCCAGTCTATGT+AGG | - | chr4_2:55058895-55058914 | Msa0608050:CDS | 50.0% | |
| ! | AGCCGGTTCCTACATAGACT+GGG | + | chr4_2:55058906-55058925 | None:intergenic | 50.0% |
| GAACCGGCTGTCTGTTTAGA+AGG | - | chr4_2:55058917-55058936 | Msa0608050:CDS | 50.0% | |
| !! | CCTGTTCTCTTCTGAGGTGT+TGG | + | chr4_2:55059034-55059053 | None:intergenic | 50.0% |
| CCAACACCTCAGAAGAGAAC+AGG | - | chr4_2:55059031-55059050 | Msa0608050:CDS | 50.0% | |
| TAGTGCCCTGTTCTCTTCTG+AGG | + | chr4_2:55059040-55059059 | None:intergenic | 50.0% | |
| ! | CAGAAGAGAACAGGGCACTA+AGG | - | chr4_2:55059040-55059059 | Msa0608050:CDS | 50.0% |
| ! | AGAGAACAGGGCACTAAGGA+TGG | - | chr4_2:55059044-55059063 | Msa0608050:CDS | 50.0% |
| ! | GAGAACAGGGCACTAAGGAT+GGG | - | chr4_2:55059045-55059064 | Msa0608050:CDS | 50.0% |
| ATTCCAGTGGCACAGTTCCA+AGG | - | chr4_2:55059147-55059166 | Msa0608050:CDS | 50.0% | |
| ACAGCAGGATGATCAGCAAG+TGG | + | chr4_2:55059177-55059196 | None:intergenic | 50.0% | |
| !! | GGTCGTCCATTTTTCACAGC+AGG | + | chr4_2:55059192-55059211 | None:intergenic | 50.0% |
| GTGAAAAATGGACGACCTCC+TGG | - | chr4_2:55059195-55059214 | Msa0608050:CDS | 50.0% | |
| GCTGCTTGATGCATCAACTG+TGG | - | chr4_2:55059239-55059258 | Msa0608050:CDS | 50.0% | |
| GGTATGAGGACAAGACTGAG+TGG | - | chr4_2:55059289-55059308 | Msa0608050:CDS | 50.0% | |
| CAGCGTGTTGGATGGATCTA+TGG | - | chr4_2:55059315-55059334 | Msa0608050:CDS | 50.0% | |
| GTTACTGAGGATGTGGTCAC+TGG | - | chr4_2:55059342-55059361 | Msa0608050:CDS | 50.0% | |
| !! | CAGGTTCTTAGATGGGCTAC+TGG | - | chr4_2:55059465-55059484 | Msa0608050:CDS | 50.0% |
| TAAGTGGCCAGGAATTGAGC+TGG | - | chr4_2:55059737-55059756 | Msa0608050:CDS | 50.0% | |
| CTGGGCCTTGAAGTCCATCA+AGG | + | chr4_2:55058888-55058907 | None:intergenic | 55.0% | |
| GGCCCAGTCTATGTAGGAAC+CGG | - | chr4_2:55058901-55058920 | Msa0608050:CDS | 55.0% | |
| ! | CAGCCGGTTCCTACATAGAC+TGG | + | chr4_2:55058907-55058926 | None:intergenic | 55.0% |
| CTACCTTGGAACTGTGCCAC+TGG | + | chr4_2:55059153-55059172 | None:intergenic | 55.0% | |
| CAGTGGCACAGTTCCAAGGT+AGG | - | chr4_2:55059151-55059170 | Msa0608050:CDS | 55.0% | |
| GATCAGCAAGTGGCCTACCT+TGG | + | chr4_2:55059167-55059186 | None:intergenic | 55.0% | |
| !! | GGTATAGTGAGAGCACCAGG+AGG | + | chr4_2:55059213-55059232 | None:intergenic | 55.0% |
| !! | CGAGGTATAGTGAGAGCACC+AGG | + | chr4_2:55059216-55059235 | None:intergenic | 55.0% |
| GATGCATCAAGCAGCTCACG+AGG | + | chr4_2:55059234-55059253 | None:intergenic | 55.0% | |
| GATTGATGGGAGCAGTTCCG+CGG | + | chr4_2:55059428-55059447 | None:intergenic | 55.0% | |
| CATCTAGCTGCCGTGCTTCA+AGG | - | chr4_2:55059810-55059829 | Msa0608050:CDS | 55.0% | |
| GTACCATACCACAGTGGAGC+CGG | - | chr4_2:55060021-55060040 | Msa0608050:CDS | 55.0% | |
| ! | TAACCGGCTCCACTGTGGTA+TGG | + | chr4_2:55060027-55060046 | None:intergenic | 55.0% |
| CTGGGCCTTGAAGTCCATCA+AGG | + | chr4_2:55058888-55058907 | None:intergenic | 55.0% | |
| GGCCCAGTCTATGTAGGAAC+CGG | - | chr4_2:55058901-55058920 | Msa0608050:CDS | 55.0% | |
| ! | CAGCCGGTTCCTACATAGAC+TGG | + | chr4_2:55058907-55058926 | None:intergenic | 55.0% |
| CTACCTTGGAACTGTGCCAC+TGG | + | chr4_2:55059153-55059172 | None:intergenic | 55.0% | |
| CAGTGGCACAGTTCCAAGGT+AGG | - | chr4_2:55059151-55059170 | Msa0608050:CDS | 55.0% | |
| GATCAGCAAGTGGCCTACCT+TGG | + | chr4_2:55059167-55059186 | None:intergenic | 55.0% | |
| !! | GGTATAGTGAGAGCACCAGG+AGG | + | chr4_2:55059213-55059232 | None:intergenic | 55.0% |
| !! | CGAGGTATAGTGAGAGCACC+AGG | + | chr4_2:55059216-55059235 | None:intergenic | 55.0% |
| GATGCATCAAGCAGCTCACG+AGG | + | chr4_2:55059234-55059253 | None:intergenic | 55.0% | |
| GATTGATGGGAGCAGTTCCG+CGG | + | chr4_2:55059428-55059447 | None:intergenic | 55.0% | |
| CATCTAGCTGCCGTGCTTCA+AGG | - | chr4_2:55059810-55059829 | Msa0608050:CDS | 55.0% | |
| GTACCATACCACAGTGGAGC+CGG | - | chr4_2:55060021-55060040 | Msa0608050:CDS | 55.0% | |
| ! | TAACCGGCTCCACTGTGGTA+TGG | + | chr4_2:55060027-55060046 | None:intergenic | 55.0% |
| GCCTCGGCTGTCATGTCCAA+CGG | - | chr4_2:55058667-55058686 | Msa0608050:CDS | 60.0% | |
| ACCGTTGGACATGACAGCCG+AGG | + | chr4_2:55058671-55058690 | None:intergenic | 60.0% | |
| ACTGAGTGGGGACAGCGTGT+TGG | - | chr4_2:55059303-55059322 | Msa0608050:CDS | 60.0% | |
| AGTGGGGACAGCGTGTTGGA+TGG | - | chr4_2:55059307-55059326 | Msa0608050:CDS | 60.0% | |
| ACTAAACGCGACGCCTTCCG+CGG | - | chr4_2:55059408-55059427 | Msa0608050:CDS | 60.0% | |
| AGAAGAGGGACAGTGCAGGC+AGG | + | chr4_2:55059623-55059642 | None:intergenic | 60.0% | |
| CCAGAGAAGAGGGACAGTGC+AGG | + | chr4_2:55059627-55059646 | None:intergenic | 60.0% | |
| CCTGCACTGTCCCTCTTCTC+TGG | - | chr4_2:55059624-55059643 | Msa0608050:CDS | 60.0% | |
| ! | CCTAGTAACCGGCTCCACTG+TGG | + | chr4_2:55060032-55060051 | None:intergenic | 60.0% |
| CCACAGTGGAGCCGGTTACT+AGG | - | chr4_2:55060029-55060048 | Msa0608050:CDS | 60.0% | |
| CAGTGGAGCCGGTTACTAGG+AGG | - | chr4_2:55060032-55060051 | Msa0608050:CDS | 60.0% | |
| GCCTCGGCTGTCATGTCCAA+CGG | - | chr4_2:55058667-55058686 | Msa0608050:CDS | 60.0% | |
| ACCGTTGGACATGACAGCCG+AGG | + | chr4_2:55058671-55058690 | None:intergenic | 60.0% | |
| ACTGAGTGGGGACAGCGTGT+TGG | - | chr4_2:55059303-55059322 | Msa0608050:CDS | 60.0% | |
| AGTGGGGACAGCGTGTTGGA+TGG | - | chr4_2:55059307-55059326 | Msa0608050:CDS | 60.0% | |
| ACTAAACGCGACGCCTTCCG+CGG | - | chr4_2:55059408-55059427 | Msa0608050:CDS | 60.0% | |
| AGAAGAGGGACAGTGCAGGC+AGG | + | chr4_2:55059623-55059642 | None:intergenic | 60.0% | |
| CCAGAGAAGAGGGACAGTGC+AGG | + | chr4_2:55059627-55059646 | None:intergenic | 60.0% | |
| CCTGCACTGTCCCTCTTCTC+TGG | - | chr4_2:55059624-55059643 | Msa0608050:CDS | 60.0% | |
| ! | CCTAGTAACCGGCTCCACTG+TGG | + | chr4_2:55060032-55060051 | None:intergenic | 60.0% |
| CCACAGTGGAGCCGGTTACT+AGG | - | chr4_2:55060029-55060048 | Msa0608050:CDS | 60.0% | |
| CAGTGGAGCCGGTTACTAGG+AGG | - | chr4_2:55060032-55060051 | Msa0608050:CDS | 60.0% | |
| CGGTCTTCTTTGGCGCGTGG+AGG | + | chr4_2:55058964-55058983 | None:intergenic | 65.0% | |
| GCACGGTCTTCTTTGGCGCG+TGG | + | chr4_2:55058967-55058986 | None:intergenic | 65.0% | |
| GATGGGAGCAGTTCCGCGGA+AGG | + | chr4_2:55059424-55059443 | None:intergenic | 65.0% | |
| CGGTCTTCTTTGGCGCGTGG+AGG | + | chr4_2:55058964-55058983 | None:intergenic | 65.0% | |
| GCACGGTCTTCTTTGGCGCG+TGG | + | chr4_2:55058967-55058986 | None:intergenic | 65.0% | |
| GATGGGAGCAGTTCCGCGGA+AGG | + | chr4_2:55059424-55059443 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 55058649 | 55060073 | 55058649 | ID=Msa0608050;Name=Msa0608050 |
| chr4_2 | mRNA | 55058649 | 55060073 | 55058649 | ID=Msa0608050-mRNA-1;Parent=Msa0608050;Name=Msa0608050-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|-1|0|1|-1|1|1|0|474 |
| chr4_2 | exon | 55058649 | 55060073 | 55058649 | ID=Msa0608050-mRNA-1:exon:13961;Parent=Msa0608050-mRNA-1 |
| chr4_2 | CDS | 55058649 | 55060073 | 55058649 | ID=Msa0608050-mRNA-1:cds;Parent=Msa0608050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
