AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1083130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1083130 MtrunA17_Chr7g0271151 99.762 420 1 0 1 420 1 420 0.0 858
Msa1083130 MtrunA17_Chr3g0126081 35.955 267 148 4 20 265 53 317 9.72e-42 154
Msa1083130 MtrunA17_Chr2g0300991 34.409 279 162 4 20 279 31 307 3.46e-40 148
Msa1083130 MtrunA17_Chr3g0146011 34.201 269 151 5 35 277 38 306 2.63e-36 139
Msa1083130 MtrunA17_Chr2g0281261 29.670 273 168 5 15 271 18 282 4.08e-26 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1083130 AT3G05940.1 77.566 419 93 1 1 418 1 419 0.0 671
Msa1083130 AT5G26740.2 75.592 422 101 2 1 420 1 422 0.0 637
Msa1083130 AT5G26740.3 75.592 422 101 2 1 420 1 422 0.0 637
Msa1083130 AT5G26740.1 75.592 422 101 2 1 420 1 422 0.0 637
Msa1083130 AT1G77220.1 36.431 269 152 3 20 269 53 321 9.27e-43 157
Msa1083130 AT4G38360.2 34.520 281 161 5 20 277 31 311 1.41e-41 153
Msa1083130 AT1G23070.1 35.018 277 150 5 15 269 23 291 2.74e-37 140
Msa1083130 AT1G77220.2 33.333 273 163 3 17 270 50 322 5.77e-37 138
Msa1083130 AT4G38360.1 32.812 256 151 3 18 252 29 284 4.41e-34 129
Msa1083130 AT4G21570.1 31.228 285 162 9 12 273 12 285 2.78e-29 116
Msa1083130 AT1G11200.1 29.749 279 174 5 15 278 19 290 8.88e-29 114
Msa1083130 AT4G21570.2 29.114 316 158 11 12 273 12 315 1.70e-23 100

Find 146 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTGTAACAACAACTAAAA+TGG 0.171683 7_2:+83372623 None:intergenic
TCTGCTGCAGGAACTTCTTC+TGG 0.174386 7_2:+83370488 None:intergenic
GATCTCAATCCTCACCAATT+AGG 0.216860 7_2:-83374650 Msa1083130:five_prime_UTR
ACCAATTAGGGTTGAGATAA+TGG 0.231192 7_2:-83374637 Msa1083130:exon
CCCATTATCTCAACCCTAAT+TGG 0.247149 7_2:+83374636 None:intergenic
TTTCTCACATTATCCATCTC+TGG 0.262507 7_2:+83370713 None:intergenic
TTGCTTTCCTCCTATACCTT+TGG 0.282986 7_2:-83372923 Msa1083130:CDS
GATCTTCTCGGATCTGATTC+TGG 0.285469 7_2:-83374695 Msa1083130:five_prime_UTR
CTGTTGTATTCCTTACTTAC+TGG 0.302664 7_2:-83372416 Msa1083130:CDS
GACACACACGTTTGGGTTAT+CGG 0.303978 7_2:-83374893 Msa1083130:five_prime_UTR
ATCTCAATCCTCACCAATTA+GGG 0.338336 7_2:-83374649 Msa1083130:five_prime_UTR
CACCGTCGGTGCAATTGCTT+TGG 0.339266 7_2:-83374571 Msa1083130:CDS
AGTAGTACTCCCTCAAATTC+TGG 0.343585 7_2:-83370629 Msa1083130:CDS
CCAATTAGGGTTGAGATAAT+GGG 0.345820 7_2:-83374636 Msa1083130:exon
CTAGCATGGGTTGGTGGTCC+TGG 0.350385 7_2:-83373006 Msa1083130:CDS
GCTCCAGCATATTCTTTGTA+TGG 0.352134 7_2:+83371044 None:intergenic
TCCTGTCACTTTGTCTAGCA+TGG 0.352706 7_2:-83373020 Msa1083130:CDS
AATCTGCTTAAATCCTTTCC+TGG 0.365163 7_2:+83370321 None:intergenic
ACAATAATGGCGACTGTTGT+TGG 0.369789 7_2:+83374757 None:intergenic
CACACACAGACACACACGTT+TGG 0.371768 7_2:-83374901 Msa1083130:five_prime_UTR
TTCTTTCTTGCTGCAAAGTC+GGG 0.373340 7_2:-83371161 Msa1083130:CDS
ATATGGTATGGACGCAGAAT+TGG 0.374420 7_2:+83370547 None:intergenic
AGGAACTTCTTCTGGGTAAC+TGG 0.377025 7_2:+83370496 None:intergenic
ACTTTATGATAATAAACTTT+GGG 0.378211 7_2:+83372439 None:intergenic
TCCATGCATTATGTAGAGTT+GGG 0.380167 7_2:-83370056 Msa1083130:three_prime_UTR
CAGCAGATAAAGCCGGTCTT+AGG 0.392911 7_2:-83370472 Msa1083130:CDS
CGTGGTTTGACCGCTAGCCT+TGG 0.393123 7_2:-83371005 Msa1083130:CDS
TGGGAATGGAGGCTGACAAC+CGG 0.396166 7_2:+83370257 None:intergenic
TTCTCACATTATCCATCTCT+GGG 0.397889 7_2:+83370714 None:intergenic
TACAGATAACTTACACTTCA+CGG 0.401405 7_2:+83373885 None:intergenic
GACTTTATGATAATAAACTT+TGG 0.402571 7_2:+83372438 None:intergenic
TTGTTATAAGTTTGAGTGGT+CGG 0.403312 7_2:-83372978 Msa1083130:CDS
TATCTACAATTGCACATAAG+TGG 0.407887 7_2:+83370163 None:intergenic
GAAGAAGAAAGAAACAATAA+TGG 0.411106 7_2:+83374744 None:intergenic
CTCGGATCTGATTCTGGCTA+GGG 0.413980 7_2:-83374689 Msa1083130:five_prime_UTR
ACACACAGACACACACGTTT+GGG 0.418167 7_2:-83374900 Msa1083130:five_prime_UTR
TTCCATGCATTATGTAGAGT+TGG 0.420040 7_2:-83370057 Msa1083130:three_prime_UTR
AGTGTGGTTTCTTACATTCC+AGG 0.423435 7_2:-83370339 Msa1083130:three_prime_UTR
GCATCAGAGTTTGAAGCATC+AGG 0.427306 7_2:+83370599 None:intergenic
CTGTTTCAGCTATGAAGCTT+GGG 0.427514 7_2:-83373055 Msa1083130:intron
ACGGTCCATGTTATTTGTCT+TGG 0.431237 7_2:-83370224 Msa1083130:three_prime_UTR
GTTCTTTCTTGCTGCAAAGT+CGG 0.434663 7_2:-83371162 Msa1083130:CDS
ACTTACCCATCCAAAGGTAT+AGG 0.437456 7_2:+83372913 None:intergenic
AAATTACCTGCCAGTAAGTA+AGG 0.437928 7_2:+83372406 None:intergenic
ATGGCGACTGTTGTTGGCTT+CGG 0.438083 7_2:+83374763 None:intergenic
ACACACACGTTTGGGTTATC+GGG 0.438647 7_2:-83374892 Msa1083130:five_prime_UTR
CCTGTCACTTTGTCTAGCAT+GGG 0.441185 7_2:-83373019 Msa1083130:CDS
GTGGTTTGACCGCTAGCCTT+GGG 0.442097 7_2:-83371004 Msa1083130:CDS
CATTCAGAGCTAGGTTGGTT+GGG 0.442787 7_2:-83370435 Msa1083130:three_prime_UTR
AGTGTAACAACAACTAAAAT+GGG 0.443292 7_2:+83372624 None:intergenic
CTGCTGCAGGAACTTCTTCT+GGG 0.444198 7_2:+83370489 None:intergenic
ATGTAGAGTTGGGTTCATAT+TGG 0.444490 7_2:-83370046 Msa1083130:three_prime_UTR
TCTATCATATTCGATCTTCT+CGG 0.448267 7_2:-83374707 Msa1083130:five_prime_UTR
TCAATAAGTGTCAAATCATA+TGG 0.449032 7_2:+83370530 None:intergenic
AGATACAAGTATGACTGCTT+TGG 0.453832 7_2:+83372558 None:intergenic
GAATATGCTGGAGCTAATAT+AGG 0.458813 7_2:-83371035 Msa1083130:CDS
TTTCCTCCTATACCTTTGGA+TGG 0.458821 7_2:-83372919 Msa1083130:CDS
CACGTTTGGGTTATCGGGTG+TGG 0.462379 7_2:-83374887 Msa1083130:five_prime_UTR
ACTGTTTCAGCTATGAAGCT+TGG 0.464786 7_2:-83373056 Msa1083130:intron
TTCTTTACAACCACAGTGAA+GGG 0.466359 7_2:-83370784 Msa1083130:CDS
TGTTATAAGTTTGAGTGGTC+GGG 0.467257 7_2:-83372977 Msa1083130:CDS
TCTCGGATCTGATTCTGGCT+AGG 0.468110 7_2:-83374690 Msa1083130:five_prime_UTR
CATATTGTAATTGTCTCCGT+TGG 0.470280 7_2:-83370197 Msa1083130:three_prime_UTR
CTTTGTCTAGCATGGGTTGG+TGG 0.473508 7_2:-83373012 Msa1083130:CDS
ACACTTATTCTTTACGCTAA+GGG 0.475471 7_2:-83372606 Msa1083130:CDS
AACTTTGGGACTGGATTGAA+TGG 0.476786 7_2:+83372453 None:intergenic
TGATTTGACACTTATTGACT+TGG 0.478189 7_2:-83370525 Msa1083130:CDS
TACACTTATTCTTTACGCTA+AGG 0.478364 7_2:-83372607 Msa1083130:CDS
ACATTCAGAGCTAGGTTGGT+TGG 0.481284 7_2:-83370436 Msa1083130:three_prime_UTR
ATGATAATAAACTTTGGGAC+TGG 0.490038 7_2:+83372444 None:intergenic
CAGTCAAATTTCTTGAGTAT+CGG 0.493051 7_2:+83370102 None:intergenic
AAGTGTCAAATCATATGGTA+TGG 0.493986 7_2:+83370535 None:intergenic
TTATCCATCTCTGGGCCAAT+CGG 0.496708 7_2:+83370722 None:intergenic
AAGCAGCTTCGTCAGCATCC+TGG 0.498366 7_2:+83371132 None:intergenic
ACAATGAAACGTTGATAAGT+AGG 0.500461 7_2:+83374507 None:intergenic
TTCCTCCTATACCTTTGGAT+GGG 0.504704 7_2:-83372918 Msa1083130:intron
AAACTTATAACAACTGATCC+AGG 0.504735 7_2:+83372988 None:intergenic
TCACGAACGTTTGTTCCGAT+TGG 0.505852 7_2:-83370737 Msa1083130:CDS
TGTATTCCTTACTTACTGGC+AGG 0.506772 7_2:-83372412 Msa1083130:intron
AGGCAGTGAACCAGAATTTG+AGG 0.509018 7_2:+83370619 None:intergenic
GGGAATGGAGGCTGACAACC+GGG 0.510023 7_2:+83370258 None:intergenic
TTGGATTCATCGCACGCCAT+CGG 0.512224 7_2:+83374932 None:intergenic
TCACTTTGTCTAGCATGGGT+TGG 0.514179 7_2:-83373015 Msa1083130:CDS
TGCAAAGTCGGGATTCATCC+AGG 0.517372 7_2:-83371150 Msa1083130:CDS
CACTTATTCTTTACGCTAAG+GGG 0.518846 7_2:-83372605 Msa1083130:CDS
AACCACAGTGAAGGGGAAGA+AGG 0.518899 7_2:-83370776 Msa1083130:CDS
TTGAAAGCCGCGGTAAAACA+AGG 0.520223 7_2:+83373924 None:intergenic
TTTCCATACAAAGAATATGC+TGG 0.525305 7_2:-83371047 Msa1083130:CDS
GATAAGGAACATTCAGAGCT+AGG 0.526347 7_2:-83370444 Msa1083130:three_prime_UTR
AGACCGGCTTTATCTGCTGC+AGG 0.526348 7_2:+83370476 None:intergenic
TTCATACGTAAGTGCAAGCA+AGG 0.532037 7_2:-83372672 Msa1083130:CDS
TTACGCTAAGGGGAAATACA+AGG 0.532724 7_2:-83372595 Msa1083130:CDS
CGTGTGTGTCTGTGTGTGTG+TGG 0.533924 7_2:+83374906 None:intergenic
AAGAAGGAACAAGGAAGTAC+AGG 0.535851 7_2:-83370760 Msa1083130:CDS
AAGGCTAGCGGTCAAACCAC+GGG 0.540121 7_2:+83371007 None:intergenic
TTTCAATTTCGGGTCATCGT+TGG 0.543942 7_2:-83374805 Msa1083130:five_prime_UTR
CCTTATCGATCACCTAAGAC+CGG 0.547244 7_2:+83370460 None:intergenic
TGTATGGAAATGCATAAAAG+TGG 0.547274 7_2:+83371060 None:intergenic
TGTTGTTGGCTTCGGTAACA+AGG 0.548815 7_2:+83374771 None:intergenic
GGCAGTGAACCAGAATTTGA+GGG 0.549362 7_2:+83370620 None:intergenic
CCATTCCCAACCAAACAAAA+CGG 0.551807 7_2:-83370243 Msa1083130:three_prime_UTR
AGGAACATTCAGAGCTAGGT+TGG 0.553513 7_2:-83370440 Msa1083130:three_prime_UTR
TAGGTTCAGTATAATTGAGA+AGG 0.555103 7_2:+83374526 None:intergenic
TCACCTGGTGGACTGTATCA+TGG 0.557444 7_2:+83370955 None:intergenic
GGTTTCTTACATTCCAGGAA+AGG 0.558392 7_2:-83370334 Msa1083130:three_prime_UTR
AATCAAATCTTCCTTGCTTG+TGG 0.562585 7_2:-83370576 Msa1083130:CDS
GTTCTTTACAACCACAGTGA+AGG 0.564984 7_2:-83370785 Msa1083130:CDS
CAAGGCTAGCGGTCAAACCA+CGG 0.567441 7_2:+83371006 None:intergenic
TACCCATCCAAAGGTATAGG+AGG 0.567651 7_2:+83372916 None:intergenic
TGTTCCGATTGGCCCAGAGA+TGG 0.569333 7_2:-83370726 Msa1083130:CDS
AGCCAAAGCAATTGCACCGA+CGG 0.569670 7_2:+83374569 None:intergenic
CTAAGGGGAAATACAAGGAT+GGG 0.571154 7_2:-83372590 Msa1083130:CDS
TCAGTTGTTATAAGTTTGAG+TGG 0.572193 7_2:-83372982 Msa1083130:CDS
TGAGATGCTTATTGCTGCAG+TGG 0.573649 7_2:-83371084 Msa1083130:CDS
ACCCAACTCTACATAATGCA+TGG 0.581229 7_2:+83370055 None:intergenic
GTTTGGGTTATCGGGTGTGG+TGG 0.583514 7_2:-83374884 Msa1083130:five_prime_UTR
GTTCCTGCAGCAGATAAAGC+CGG 0.587118 7_2:-83370479 Msa1083130:CDS
GCTAAGGGGAAATACAAGGA+TGG 0.587400 7_2:-83372591 Msa1083130:CDS
ACAATTGCACATAAGTGGAT+AGG 0.588419 7_2:+83370168 None:intergenic
CCCATGCTAGACAAAGTGAC+AGG 0.598216 7_2:+83373019 None:intergenic
CAATTAGGGTTGAGATAATG+GGG 0.600956 7_2:-83374635 Msa1083130:exon
TATCTCAACCCTAATTGGTG+AGG 0.604064 7_2:+83374641 None:intergenic
GAGATGCTTATTGCTGCAGT+GGG 0.611426 7_2:-83371083 Msa1083130:CDS
CTATACATTCTCATATACAA+TGG 0.615648 7_2:-83372526 Msa1083130:CDS
GTGAAGGGGAAGAAGGAACA+AGG 0.618383 7_2:-83370769 Msa1083130:CDS
TATGCTGGAGCTAATATAGG+TGG 0.621058 7_2:-83371032 Msa1083130:CDS
ATTGGACACATCCACAAGCA+AGG 0.624740 7_2:+83370565 None:intergenic
AGAACATAATCATGATACGT+TGG 0.630961 7_2:+83370803 None:intergenic
CAAAGCATGCCCAAGGCTAG+CGG 0.631165 7_2:+83370995 None:intergenic
GTGTGTGTCTGTGTGTGTGT+GGG 0.632118 7_2:+83374907 None:intergenic
TTCCTTCTTCCCCTTCACTG+TGG 0.632503 7_2:+83370774 None:intergenic
TTACCATGATACAGTCCACC+AGG 0.635265 7_2:-83370958 Msa1083130:intron
ATGCAAACTTACCCATCCAA+AGG 0.637240 7_2:+83372907 None:intergenic
ACGACTATTAATGATTCCGA+TGG 0.640847 7_2:-83374948 Msa1083130:five_prime_UTR
TCTTTACAACCACAGTGAAG+GGG 0.644033 7_2:-83370783 Msa1083130:CDS
TAAGCATATAACTGGAAACA+AGG 0.644662 7_2:-83370687 Msa1083130:CDS
TCAACTTCAAAGCATGCCCA+AGG 0.650573 7_2:+83370988 None:intergenic
GAAGACCAAGACAAATAACA+TGG 0.664001 7_2:+83370219 None:intergenic
AGAGAACTATGATTCAAGTG+TGG 0.668928 7_2:-83370355 Msa1083130:three_prime_UTR
TGAAAGCCGCGGTAAAACAA+GGG 0.670598 7_2:+83373925 None:intergenic
AGTGGATAGGACACAACCAA+CGG 0.679096 7_2:+83370181 None:intergenic
CAAGTCATCAGACAGACTGA+CGG 0.684226 7_2:+83372946 None:intergenic
TTAAAGTAGATTGAAAGCCG+CGG 0.686396 7_2:+83373914 None:intergenic
TCATACGTAAGTGCAAGCAA+GGG 0.690075 7_2:-83372671 Msa1083130:CDS
GCTAATATAGGTGGATCCCG+TGG 0.715148 7_2:-83371023 Msa1083130:CDS
AATTAGGGTTGAGATAATGG+GGG 0.759621 7_2:-83374634 Msa1083130:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAAAATTAATTTTTATA+TGG - chr7_2:83372719-83372738 Msa1083130:intron 0.0%
!! TTAATTATAATTTCAAATTC+AGG + chr7_2:83371821-83371840 None:intergenic 10.0%
!!! TTTTTAAAAAAAACTTTAAG+AGG - chr7_2:83372180-83372199 Msa1083130:intron 10.0%
!!! AAAGTAGTAATTTTCAATTT+CGG - chr7_2:83370135-83370154 Msa1083130:three_prime_UTR 15.0%
!! TATATCTAAAAAATTGTCAT+TGG - chr7_2:83371428-83371447 Msa1083130:intron 15.0%
!! ATATCTAAAAAATTGTCATT+GGG - chr7_2:83371429-83371448 Msa1083130:intron 15.0%
!!! ATGTTTATTTTTCTAATGAT+AGG - chr7_2:83371454-83371473 Msa1083130:intron 15.0%
!! AATGTTAAATAGTAAATGAA+GGG + chr7_2:83371550-83371569 None:intergenic 15.0%
!! TAATGTTAAATAGTAAATGA+AGG + chr7_2:83371551-83371570 None:intergenic 15.0%
!! ACTTTATGATAATAAACTTT+GGG + chr7_2:83372515-83372534 None:intergenic 15.0%
!!! TTATACATCTTTCATTTTTA+TGG - chr7_2:83372568-83372587 Msa1083130:CDS 15.0%
!! CAGTAAGTAAAAAAAAAAAA+AGG + chr7_2:83373259-83373278 None:intergenic 15.0%
!!! TCAAATTAATTTTTTGAAGA+TGG - chr7_2:83373663-83373682 Msa1083130:intron 15.0%
!!! TTTTTTGTTTTTCATTTCTT+AGG - chr7_2:83373759-83373778 Msa1083130:intron 15.0%
!!! TTTTTGTTTTTCATTTCTTA+GGG - chr7_2:83373760-83373779 Msa1083130:intron 15.0%
!!! AAGTAGTAATTTTCAATTTC+GGG - chr7_2:83370136-83370155 Msa1083130:three_prime_UTR 20.0%
!! ATATAGAAAGTTGTAAATTG+TGG - chr7_2:83370765-83370784 Msa1083130:CDS 20.0%
!!! TGCTTTTTAAAAAATGACAA+TGG + chr7_2:83371243-83371262 None:intergenic 20.0%
!! TATCTAAAAAATTGTCATTG+GGG - chr7_2:83371430-83371449 Msa1083130:intron 20.0%
!! ATGTTAAATAGTAAATGAAG+GGG + chr7_2:83371549-83371568 None:intergenic 20.0%
!!! AGGTATATATAATCATTTTC+AGG + chr7_2:83372103-83372122 None:intergenic 20.0%
!! GACTTTATGATAATAAACTT+TGG + chr7_2:83372516-83372535 None:intergenic 20.0%
!!! TGTTTTATGTTACCATAAAA+AGG - chr7_2:83372679-83372698 Msa1083130:CDS 20.0%
!!! ACATTATAAGATGAGATTTT+TGG + chr7_2:83372989-83373008 None:intergenic 20.0%
!!! AAATTCTAAGCTTGTTTATA+TGG - chr7_2:83373543-83373562 Msa1083130:intron 20.0%
!! TATGGTCATAGTAATAAAAA+AGG - chr7_2:83373561-83373580 Msa1083130:intron 20.0%
!! ATTATTTATTTGCATGCAAA+AGG - chr7_2:83373616-83373635 Msa1083130:intron 20.0%
!!! TTTTGTTTTTCATTTCTTAG+GGG - chr7_2:83373761-83373780 Msa1083130:intron 20.0%
!! AGAAAAAATAAGCATATAAC+TGG - chr7_2:83374256-83374275 Msa1083130:intron 20.0%
!! TAGTAAAATAAAAACGTCAA+TGG + chr7_2:83374945-83374964 None:intergenic 20.0%
! GAAGAAGAAAGAAACAATAA+TGG + chr7_2:83370210-83370229 None:intergenic 25.0%
! TACATAAACAATGAAAAACG+TGG + chr7_2:83370531-83370550 None:intergenic 25.0%
!!! TTGTTTTTCACTTAGTTGAA+AGG - chr7_2:83370678-83370697 Msa1083130:CDS 25.0%
!! TGTTTTTCACTTAGTTGAAA+GGG - chr7_2:83370679-83370698 Msa1083130:CDS 25.0%
! GAAAATGAAGAAGAAATCAA+AGG + chr7_2:83370867-83370886 None:intergenic 25.0%
!!! AAACTTTAATTTTCTCTGAC+AGG - chr7_2:83370979-83370998 Msa1083130:CDS 25.0%
!! AACTTATTGGTTGTGATTAA+GGG - chr7_2:83371182-83371201 Msa1083130:intron 25.0%
!! ACAACATCATGATTGATTTA+AGG - chr7_2:83371262-83371281 Msa1083130:intron 25.0%
! TGTTAAATAGTAAATGAAGG+GGG + chr7_2:83371548-83371567 None:intergenic 25.0%
!! TTTGTATTTTCTTTTGCTAG+AGG - chr7_2:83371580-83371599 Msa1083130:intron 25.0%
! TGATTTATGATAGAACACTA+TGG - chr7_2:83371670-83371689 Msa1083130:intron 25.0%
!! TTGCATCTGATTCATATTTT+TGG - chr7_2:83372061-83372080 Msa1083130:intron 25.0%
! CATCTATGAAACAAATTCAA+AGG + chr7_2:83372137-83372156 None:intergenic 25.0%
!! AAAAAAAACTTTAAGAGGCT+AGG - chr7_2:83372185-83372204 Msa1083130:intron 25.0%
! AGTGTAACAACAACTAAAAT+GGG + chr7_2:83372330-83372349 None:intergenic 25.0%
! AAGTGTAACAACAACTAAAA+TGG + chr7_2:83372331-83372350 None:intergenic 25.0%
! CTATACATTCTCATATACAA+TGG - chr7_2:83372425-83372444 Msa1083130:CDS 25.0%
!! CTATGCTTTTCTCATATTTT+CGG - chr7_2:83372592-83372611 Msa1083130:CDS 25.0%
! TTCTAACACTACTTAGATAA+GGG + chr7_2:83372824-83372843 None:intergenic 25.0%
! ATTCTAACACTACTTAGATA+AGG + chr7_2:83372825-83372844 None:intergenic 25.0%
! TGGAAGTGAAAATGAAAAAT+GGG + chr7_2:83373044-83373063 None:intergenic 25.0%
! ATGGAAGTGAAAATGAAAAA+TGG + chr7_2:83373045-83373064 None:intergenic 25.0%
!!! ACTGTTTTTTCTTATACACA+AGG - chr7_2:83373275-83373294 Msa1083130:intron 25.0%
!!! CTGTTTTTTCTTATACACAA+GGG - chr7_2:83373276-83373295 Msa1083130:intron 25.0%
! AATCAATTATGGAGTAAAGA+TGG + chr7_2:83373390-83373409 None:intergenic 25.0%
! TCTTTACTCCATAATTGATT+TGG - chr7_2:83373390-83373409 Msa1083130:intron 25.0%
! AGGTAAGTTAAAAATGTAGT+TGG + chr7_2:83373482-83373501 None:intergenic 25.0%
! TTTGTTAATTGCTTTGTAGT+GGG - chr7_2:83373639-83373658 Msa1083130:intron 25.0%
!!! TTTGTTTTTCATTTCTTAGG+GGG - chr7_2:83373762-83373781 Msa1083130:intron 25.0%
! ACACAAGGAACTATAAAATA+TGG + chr7_2:83374052-83374071 None:intergenic 25.0%
! AGTAGTATCAGGTTATTAAT+TGG + chr7_2:83374108-83374127 None:intergenic 25.0%
! TCAATAAGTGTCAAATCATA+TGG + chr7_2:83374424-83374443 None:intergenic 25.0%
!!! TAAATGTTTTTGCTATAGAG+AGG - chr7_2:83374539-83374558 Msa1083130:CDS 25.0%
! CAATCTATATCTTAAAAACC+CGG - chr7_2:83374675-83374694 Msa1083130:five_prime_UTR 25.0%
TCTATCATATTCGATCTTCT+CGG - chr7_2:83370244-83370263 Msa1083130:three_prime_UTR 30.0%
TAGGTTCAGTATAATTGAGA+AGG + chr7_2:83370428-83370447 None:intergenic 30.0%
! ACAATGAAACGTTGATAAGT+AGG + chr7_2:83370447-83370466 None:intergenic 30.0%
TATGTATTTCCTTTCCTACT+AGG - chr7_2:83370545-83370564 Msa1083130:CDS 30.0%
ATGAAAAAACCTAGTAGGAA+AGG + chr7_2:83370557-83370576 None:intergenic 30.0%
!!! TTCCTACTAGGTTTTTTCAT+TGG - chr7_2:83370557-83370576 Msa1083130:CDS 30.0%
! TTTCATTGGTGTCTGTTAAT+TGG - chr7_2:83370571-83370590 Msa1083130:CDS 30.0%
TTTCAACAGTGACACATTTA+GGG + chr7_2:83370642-83370661 None:intergenic 30.0%
ATTTCAACAGTGACACATTT+AGG + chr7_2:83370643-83370662 None:intergenic 30.0%
! TTACCCATGTTTTACCTATT+TGG - chr7_2:83370814-83370833 Msa1083130:intron 30.0%
GAACCAAATAGGTAAAACAT+GGG + chr7_2:83370820-83370839 None:intergenic 30.0%
AGAACCAAATAGGTAAAACA+TGG + chr7_2:83370821-83370840 None:intergenic 30.0%
AAGTGCTCTTGAAAATCTAA+TGG - chr7_2:83370889-83370908 Msa1083130:intron 30.0%
AGTGCTCTTGAAAATCTAAT+GGG - chr7_2:83370890-83370909 Msa1083130:intron 30.0%
TACAGATAACTTACACTTCA+CGG + chr7_2:83371069-83371088 None:intergenic 30.0%
CTAAATAACAGCAACAACAA+AGG + chr7_2:83371115-83371134 None:intergenic 30.0%
ACAGGGAGGAAAAAAATATA+CGG + chr7_2:83371152-83371171 None:intergenic 30.0%
! ATAAGTTGAACCATGAAACA+GGG + chr7_2:83371169-83371188 None:intergenic 30.0%
! AATAAGTTGAACCATGAAAC+AGG + chr7_2:83371170-83371189 None:intergenic 30.0%
TGTTTCATGGTTCAACTTAT+TGG - chr7_2:83371169-83371188 Msa1083130:CDS 30.0%
! CAACTTATTGGTTGTGATTA+AGG - chr7_2:83371181-83371200 Msa1083130:intron 30.0%
! CATGATTGATTTAAGGTTCT+AGG - chr7_2:83371269-83371288 Msa1083130:intron 30.0%
CTTCATCGTATACATATCAA+GGG + chr7_2:83371316-83371335 None:intergenic 30.0%
ACTTCATCGTATACATATCA+AGG + chr7_2:83371317-83371336 None:intergenic 30.0%
!! CACTTTTTATCCTACAAACA+TGG + chr7_2:83371371-83371390 None:intergenic 30.0%
AGAATAACCAATGAACTAGA+AGG + chr7_2:83371402-83371421 None:intergenic 30.0%
! CTAGTTCATTGGTTATTCTT+TGG - chr7_2:83371403-83371422 Msa1083130:intron 30.0%
GTTAAATAGTAAATGAAGGG+GGG + chr7_2:83371547-83371566 None:intergenic 30.0%
AGATCTAGAGATTAATGAGT+TGG - chr7_2:83371638-83371657 Msa1083130:intron 30.0%
AAACAGTTGAGAAGAGAAAA+TGG + chr7_2:83371882-83371901 None:intergenic 30.0%
AAACTTATAACAACTGATCC+AGG + chr7_2:83371966-83371985 None:intergenic 30.0%
TCAGTTGTTATAAGTTTGAG+TGG - chr7_2:83371969-83371988 Msa1083130:intron 30.0%
TTGTTATAAGTTTGAGTGGT+CGG - chr7_2:83371973-83371992 Msa1083130:intron 30.0%
AAAGTGTATTTCCATACAGT+GGG + chr7_2:83372224-83372243 None:intergenic 30.0%
! AAAAGTGTATTTCCATACAG+TGG + chr7_2:83372225-83372244 None:intergenic 30.0%
!! ACCTCTAAAACTTCTATTGT+AGG - chr7_2:83372253-83372272 Msa1083130:intron 30.0%
TACACTTATTCTTTACGCTA+AGG - chr7_2:83372344-83372363 Msa1083130:intron 30.0%
ACACTTATTCTTTACGCTAA+GGG - chr7_2:83372345-83372364 Msa1083130:intron 30.0%
!! ATGATAATAAACTTTGGGAC+TGG + chr7_2:83372510-83372529 None:intergenic 30.0%
! TGACATCAAGATCCTTTTTA+TGG + chr7_2:83372694-83372713 None:intergenic 30.0%
!! AAGATGATCAGTAACTTGTT+TGG - chr7_2:83372759-83372778 Msa1083130:intron 30.0%
!! ATCAGTAACTTGTTTGGATT+TGG - chr7_2:83372765-83372784 Msa1083130:intron 30.0%
ATTCATTGCACGTTATTGTT+AGG - chr7_2:83372843-83372862 Msa1083130:intron 30.0%
AAGCTTGAATGTTGAAAAGA+CGG + chr7_2:83372963-83372982 None:intergenic 30.0%
! TTATTCTCAAGTTGCTATCA+GGG - chr7_2:83373008-83373027 Msa1083130:CDS 30.0%
GGATAATCAAACAACACAAA+TGG + chr7_2:83373369-83373388 None:intergenic 30.0%
TTGGATGACCAAATCAATTA+TGG + chr7_2:83373401-83373420 None:intergenic 30.0%
! TCATCAAGGTACATTTTTCT+CGG + chr7_2:83373434-83373453 None:intergenic 30.0%
TGATGACTTTCACAAACAAA+AGG + chr7_2:83373458-83373477 None:intergenic 30.0%
AAAGGAAGTTGACATTCATA+TGG - chr7_2:83373579-83373598 Msa1083130:intron 30.0%
! GTTTGTTAATTGCTTTGTAG+TGG - chr7_2:83373638-83373657 Msa1083130:intron 30.0%
TAACCAACAAGCTAACATAT+AGG + chr7_2:83373695-83373714 None:intergenic 30.0%
!!! GCATTTGCTTTTTACACTAA+AGG - chr7_2:83373721-83373740 Msa1083130:intron 30.0%
TGTATGGAAATGCATAAAAG+TGG + chr7_2:83373894-83373913 None:intergenic 30.0%
TTTCCATACAAAGAATATGC+TGG - chr7_2:83373904-83373923 Msa1083130:CDS 30.0%
AGAACATAATCATGATACGT+TGG + chr7_2:83374151-83374170 None:intergenic 30.0%
TAAGCATATAACTGGAAACA+AGG - chr7_2:83374264-83374283 Msa1083130:intron 30.0%
AAGTGTCAAATCATATGGTA+TGG + chr7_2:83374419-83374438 None:intergenic 30.0%
! TGATTTGACACTTATTGACT+TGG - chr7_2:83374426-83374445 Msa1083130:intron 30.0%
!! TTTTTGCTATAGAGAGGATA+TGG - chr7_2:83374545-83374564 Msa1083130:CDS 30.0%
!! TTTTGCTATAGAGAGGATAT+GGG - chr7_2:83374546-83374565 Msa1083130:CDS 30.0%
! GCATCTAACAGTTTTTCTTT+TGG - chr7_2:83374568-83374587 Msa1083130:CDS 30.0%
!! TAACAGTTTTTCTTTTGGCT+CGG - chr7_2:83374573-83374592 Msa1083130:CDS 30.0%
TATCTACAATTGCACATAAG+TGG + chr7_2:83374791-83374810 None:intergenic 30.0%
CAGTCAAATTTCTTGAGTAT+CGG + chr7_2:83374852-83374871 None:intergenic 30.0%
ACGACTATTAATGATTCCGA+TGG - chr7_2:83370003-83370022 Msa1083130:three_prime_UTR 35.0%
ATCTCAATCCTCACCAATTA+GGG - chr7_2:83370302-83370321 Msa1083130:three_prime_UTR 35.0%
ACCAATTAGGGTTGAGATAA+TGG - chr7_2:83370314-83370333 Msa1083130:three_prime_UTR 35.0%
CCAATTAGGGTTGAGATAAT+GGG - chr7_2:83370315-83370334 Msa1083130:three_prime_UTR 35.0%
CAATTAGGGTTGAGATAATG+GGG - chr7_2:83370316-83370335 Msa1083130:three_prime_UTR 35.0%
! AATTAGGGTTGAGATAATGG+GGG - chr7_2:83370317-83370336 Msa1083130:three_prime_UTR 35.0%
GCGATGACATAGAAAAAAAG+CGG + chr7_2:83370351-83370370 None:intergenic 35.0%
TAAGAAGAGAAGTAACTCAC+CGG + chr7_2:83370489-83370508 None:intergenic 35.0%
ACGTGGATAACAAACATTGA+AGG + chr7_2:83370514-83370533 None:intergenic 35.0%
CACCAATGAAAAAACCTAGT+AGG + chr7_2:83370562-83370581 None:intergenic 35.0%
!!! AGTTGAAAGGGTTTTGAACT+TGG - chr7_2:83370691-83370710 Msa1083130:CDS 35.0%
TTGAACTTGGAAGGTCAAAA+TGG - chr7_2:83370704-83370723 Msa1083130:CDS 35.0%
TGAACTTGGAAGGTCAAAAT+GGG - chr7_2:83370705-83370724 Msa1083130:CDS 35.0%
TTAAAGTAGATTGAAAGCCG+CGG + chr7_2:83371040-83371059 None:intergenic 35.0%
!!! TTTTTTTCCTCCCTGTTTCA+TGG - chr7_2:83371156-83371175 Msa1083130:CDS 35.0%
GGCTATGTATGATATATCAC+TGG + chr7_2:83371222-83371241 None:intergenic 35.0%
ATACGATGAAGTCTCTAGTA+TGG - chr7_2:83371325-83371344 Msa1083130:intron 35.0%
TAGATAGAGTCCATGTTTGT+AGG - chr7_2:83371358-83371377 Msa1083130:intron 35.0%
!! ATCTAGTCCTTCTAGTTCAT+TGG - chr7_2:83371392-83371411 Msa1083130:intron 35.0%
! TTTTCTTTTGCTAGAGGTAG+AGG - chr7_2:83371586-83371605 Msa1083130:intron 35.0%
TGTTATAAGTTTGAGTGGTC+GGG - chr7_2:83371974-83371993 Msa1083130:intron 35.0%
!! GCCTACAATAGAAGTTTTAG+AGG + chr7_2:83372257-83372276 None:intergenic 35.0%
CACTTATTCTTTACGCTAAG+GGG - chr7_2:83372346-83372365 Msa1083130:intron 35.0%
AGATACAAGTATGACTGCTT+TGG + chr7_2:83372396-83372415 None:intergenic 35.0%
CTGTTGTATTCCTTACTTAC+TGG - chr7_2:83372535-83372554 Msa1083130:CDS 35.0%
AAATTACCTGCCAGTAAGTA+AGG + chr7_2:83372548-83372567 None:intergenic 35.0%
TATTGTGATGCTAGATGAAC+AGG - chr7_2:83372634-83372653 Msa1083130:CDS 35.0%
TGCACGTTATTGTTAGGAAT+TGG - chr7_2:83372849-83372868 Msa1083130:intron 35.0%
TTAAAATCATTCTGCTGAGC+TGG - chr7_2:83372937-83372956 Msa1083130:CDS 35.0%
! GTTATTCTCAAGTTGCTATC+AGG - chr7_2:83373007-83373026 Msa1083130:CDS 35.0%
AAAATAGATGTAGTGTGTGC+TGG + chr7_2:83373155-83373174 None:intergenic 35.0%
! AGCACACACTACATCTATTT+TGG - chr7_2:83373154-83373173 Msa1083130:intron 35.0%
TCCTCGTAGTTCTTTCTATT+TGG - chr7_2:83373193-83373212 Msa1083130:intron 35.0%
ACCAAATAGAAAGAACTACG+AGG + chr7_2:83373197-83373216 None:intergenic 35.0%
GACATTGAAAGATTCAGAGT+TGG + chr7_2:83373237-83373256 None:intergenic 35.0%
! TTTTCTCGGTATGCTAAACT+TGG + chr7_2:83373420-83373439 None:intergenic 35.0%
CACAAACAAAAGGATCATCA+AGG + chr7_2:83373448-83373467 None:intergenic 35.0%
AACCTTGAGAAATAGAAAGC+AGG + chr7_2:83373505-83373524 None:intergenic 35.0%
!! TAGCCTATATGTTAGCTTGT+TGG - chr7_2:83373689-83373708 Msa1083130:intron 35.0%
GAATATGCTGGAGCTAATAT+AGG - chr7_2:83373916-83373935 Msa1083130:CDS 35.0%
GTTCCTTGTGTTGAAATTTC+TGG - chr7_2:83374061-83374080 Msa1083130:intron 35.0%
GGAAGAAGACGAAAAAACAA+AGG + chr7_2:83374087-83374106 None:intergenic 35.0%
CCACAAATTTGAGTAGTATC+AGG + chr7_2:83374119-83374138 None:intergenic 35.0%
CCTGATACTACTCAAATTTG+TGG - chr7_2:83374116-83374135 Msa1083130:intron 35.0%
TTCTTTACAACCACAGTGAA+GGG - chr7_2:83374167-83374186 Msa1083130:intron 35.0%
TTCTCACATTATCCATCTCT+GGG + chr7_2:83374240-83374259 None:intergenic 35.0%
TTTCTCACATTATCCATCTC+TGG + chr7_2:83374241-83374260 None:intergenic 35.0%
AATCAAATCTTCCTTGCTTG+TGG - chr7_2:83374375-83374394 Msa1083130:intron 35.0%
AGAGAACTATGATTCAAGTG+TGG - chr7_2:83374596-83374615 Msa1083130:CDS 35.0%
AATCTGCTTAAATCCTTTCC+TGG + chr7_2:83374633-83374652 None:intergenic 35.0%
!! ATAACATGGACCGTTTTGTT+TGG + chr7_2:83374721-83374740 None:intergenic 35.0%
GAAGACCAAGACAAATAACA+TGG + chr7_2:83374735-83374754 None:intergenic 35.0%
CATATTGTAATTGTCTCCGT+TGG - chr7_2:83374754-83374773 Msa1083130:five_prime_UTR 35.0%
ACAATTGCACATAAGTGGAT+AGG + chr7_2:83374786-83374805 None:intergenic 35.0%
TTCCATGCATTATGTAGAGT+TGG - chr7_2:83374894-83374913 Msa1083130:five_prime_UTR 35.0%
TCCATGCATTATGTAGAGTT+GGG - chr7_2:83374895-83374914 Msa1083130:five_prime_UTR 35.0%
ATGTAGAGTTGGGTTCATAT+TGG - chr7_2:83374905-83374924 Msa1083130:five_prime_UTR 35.0%
!! ACAGCTGTGCTTCTACTTTT+CGG + chr7_2:83370103-83370122 None:intergenic 40.0%
! TTTCAATTTCGGGTCATCGT+TGG - chr7_2:83370146-83370165 Msa1083130:three_prime_UTR 40.0%
ACAATAATGGCGACTGTTGT+TGG + chr7_2:83370197-83370216 None:intergenic 40.0%
GATCTCAATCCTCACCAATT+AGG - chr7_2:83370301-83370320 Msa1083130:three_prime_UTR 40.0%
TATCTCAACCCTAATTGGTG+AGG + chr7_2:83370313-83370332 None:intergenic 40.0%
CCCATTATCTCAACCCTAAT+TGG + chr7_2:83370318-83370337 None:intergenic 40.0%
! CATTGTTCGCATCGTTTTCA+TGG - chr7_2:83370461-83370480 Msa1083130:exon 40.0%
! ACAGTGACACATTTAGGGTT+AGG + chr7_2:83370637-83370656 None:intergenic 40.0%
!!! GAAAGGGTTTTGAACTTGGA+AGG - chr7_2:83370695-83370714 Msa1083130:CDS 40.0%
GAACTTGGAAGGTCAAAATG+GGG - chr7_2:83370706-83370725 Msa1083130:CDS 40.0%
TGCACCAACAGTCTCTTATT+AGG - chr7_2:83370840-83370859 Msa1083130:intron 40.0%
AGGACCTAATAAGAGACTGT+TGG + chr7_2:83370847-83370866 None:intergenic 40.0%
GTCAGGGTGAACTTAGATTA+CGG + chr7_2:83371785-83371804 None:intergenic 40.0%
AGGACAGACAACAATTGTCA+GGG + chr7_2:83371801-83371820 None:intergenic 40.0%
ACTGTTTCAGCTATGAAGCT+TGG - chr7_2:83371895-83371914 Msa1083130:intron 40.0%
CTGTTTCAGCTATGAAGCTT+GGG - chr7_2:83371896-83371915 Msa1083130:intron 40.0%
TTGCTTTCCTCCTATACCTT+TGG - chr7_2:83372028-83372047 Msa1083130:intron 40.0%
TTTCCTCCTATACCTTTGGA+TGG - chr7_2:83372032-83372051 Msa1083130:intron 40.0%
TTCCTCCTATACCTTTGGAT+GGG - chr7_2:83372033-83372052 Msa1083130:intron 40.0%
! ACTTACCCATCCAAAGGTAT+AGG + chr7_2:83372041-83372060 None:intergenic 40.0%
ATGCAAACTTACCCATCCAA+AGG + chr7_2:83372047-83372066 None:intergenic 40.0%
ATTCAAAGGCTCAGATCTCA+AGG + chr7_2:83372123-83372142 None:intergenic 40.0%
TTCATACGTAAGTGCAAGCA+AGG - chr7_2:83372279-83372298 Msa1083130:intron 40.0%
TCATACGTAAGTGCAAGCAA+GGG - chr7_2:83372280-83372299 Msa1083130:intron 40.0%
TTACGCTAAGGGGAAATACA+AGG - chr7_2:83372356-83372375 Msa1083130:intron 40.0%
CTAAGGGGAAATACAAGGAT+GGG - chr7_2:83372361-83372380 Msa1083130:intron 40.0%
!! TGCTCTTGCATTGTTTTACG+TGG - chr7_2:83372455-83372474 Msa1083130:CDS 40.0%
!! ATTGTTTTACGTGGCATGCA+AGG - chr7_2:83372464-83372483 Msa1083130:CDS 40.0%
!! AACTTTGGGACTGGATTGAA+TGG + chr7_2:83372501-83372520 None:intergenic 40.0%
TGTATTCCTTACTTACTGGC+AGG - chr7_2:83372539-83372558 Msa1083130:CDS 40.0%
AAGAACTACGAGGAATGAGA+AGG + chr7_2:83373187-83373206 None:intergenic 40.0%
TCAAACAACACAAATGGTGC+AGG + chr7_2:83373363-83373382 None:intergenic 40.0%
CTTGAGAAATAGAAAGCAGG+AGG + chr7_2:83373502-83373521 None:intergenic 40.0%
! CTCCTGCTTTCTATTTCTCA+AGG - chr7_2:83373500-83373519 Msa1083130:intron 40.0%
GTTCTTTCTTGCTGCAAAGT+CGG - chr7_2:83373789-83373808 Msa1083130:intron 40.0%
TTCTTTCTTGCTGCAAAGTC+GGG - chr7_2:83373790-83373809 Msa1083130:intron 40.0%
GCTCCAGCATATTCTTTGTA+TGG + chr7_2:83373910-83373929 None:intergenic 40.0%
TATGCTGGAGCTAATATAGG+TGG - chr7_2:83373919-83373938 Msa1083130:CDS 40.0%
CATATAAAGTGAGACTCACC+TGG + chr7_2:83374014-83374033 None:intergenic 40.0%
AGGCCAGAAATTTCAACACA+AGG + chr7_2:83374067-83374086 None:intergenic 40.0%
GTTCTTTACAACCACAGTGA+AGG - chr7_2:83374166-83374185 Msa1083130:intron 40.0%
TCTTTACAACCACAGTGAAG+GGG - chr7_2:83374168-83374187 Msa1083130:intron 40.0%
! AAGAAGGAACAAGGAAGTAC+AGG - chr7_2:83374191-83374210 Msa1083130:intron 40.0%
AGTAGTACTCCCTCAAATTC+TGG - chr7_2:83374322-83374341 Msa1083130:intron 40.0%
ATATGGTATGGACGCAGAAT+TGG + chr7_2:83374407-83374426 None:intergenic 40.0%
GATAAGGAACATTCAGAGCT+AGG - chr7_2:83374507-83374526 Msa1083130:CDS 40.0%
AGTGTGGTTTCTTACATTCC+AGG - chr7_2:83374612-83374631 Msa1083130:CDS 40.0%
GGTTTCTTACATTCCAGGAA+AGG - chr7_2:83374617-83374636 Msa1083130:CDS 40.0%
!! TTTTGTTTGGTTGGGAATGG+AGG + chr7_2:83374708-83374727 None:intergenic 40.0%
CCATTCCCAACCAAACAAAA+CGG - chr7_2:83374708-83374727 Msa1083130:five_prime_UTR 40.0%
!!! ATGGACCGTTTTGTTTGGTT+GGG + chr7_2:83374716-83374735 None:intergenic 40.0%
! ACGGTCCATGTTATTTGTCT+TGG - chr7_2:83374727-83374746 Msa1083130:five_prime_UTR 40.0%
ACCCAACTCTACATAATGCA+TGG + chr7_2:83374899-83374918 None:intergenic 40.0%
ACACACAGACACACACGTTT+GGG - chr7_2:83370051-83370070 Msa1083130:three_prime_UTR 45.0%
! GACACACACGTTTGGGTTAT+CGG - chr7_2:83370058-83370077 Msa1083130:three_prime_UTR 45.0%
! ACACACACGTTTGGGTTATC+GGG - chr7_2:83370059-83370078 Msa1083130:three_prime_UTR 45.0%
!! TGTTGTTGGCTTCGGTAACA+AGG + chr7_2:83370183-83370202 None:intergenic 45.0%
GATCTTCTCGGATCTGATTC+TGG - chr7_2:83370256-83370275 Msa1083130:three_prime_UTR 45.0%
! ATCGCTTTCTTTTGCACCGT+CGG - chr7_2:83370366-83370385 Msa1083130:three_prime_UTR 45.0%
! TCGCATCGTTTTCATGGTTC+CGG - chr7_2:83370467-83370486 Msa1083130:exon 45.0%
CATGGGTAATTCAGTCAGTG+AGG + chr7_2:83370803-83370822 None:intergenic 45.0%
CTGTTGGTGCAGAACCAAAT+AGG + chr7_2:83370831-83370850 None:intergenic 45.0%
!!! TCTTGTCCCTTGTTTTACCG+CGG - chr7_2:83371020-83371039 Msa1083130:CDS 45.0%
TGAAAGCCGCGGTAAAACAA+GGG + chr7_2:83371029-83371048 None:intergenic 45.0%
TTGAAAGCCGCGGTAAAACA+AGG + chr7_2:83371030-83371049 None:intergenic 45.0%
AGTTGAACCATGAAACAGGG+AGG + chr7_2:83371166-83371185 None:intergenic 45.0%
TTCCCACTCTTGTGATTGCA+CGG + chr7_2:83371517-83371536 None:intergenic 45.0%
! CTTATCCCACTAAGTGGGTT+CGG + chr7_2:83371715-83371734 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr7_2:83371720-83371739 None:intergenic 45.0%
CAGGACAGACAACAATTGTC+AGG + chr7_2:83371802-83371821 None:intergenic 45.0%
!! TCCTGTCACTTTGTCTAGCA+TGG - chr7_2:83371931-83371950 Msa1083130:intron 45.0%
!! CCTGTCACTTTGTCTAGCAT+GGG - chr7_2:83371932-83371951 Msa1083130:intron 45.0%
TCACTTTGTCTAGCATGGGT+TGG - chr7_2:83371936-83371955 Msa1083130:intron 45.0%
CAAGTCATCAGACAGACTGA+CGG + chr7_2:83372008-83372027 None:intergenic 45.0%
! TACCCATCCAAAGGTATAGG+AGG + chr7_2:83372038-83372057 None:intergenic 45.0%
GCTAAGGGGAAATACAAGGA+TGG - chr7_2:83372360-83372379 Msa1083130:intron 45.0%
! TTCTCAAGTTGCTATCAGGG+TGG - chr7_2:83373011-83373030 Msa1083130:CDS 45.0%
! TCTCAAGTTGCTATCAGGGT+GGG - chr7_2:83373012-83373031 Msa1083130:CDS 45.0%
!! TGACGGGCTGAACTATACAA+TGG + chr7_2:83373064-83373083 None:intergenic 45.0%
TTGTATAGTTCAGCCCGTCA+AGG - chr7_2:83373064-83373083 Msa1083130:intron 45.0%
AGAACAGAGCAAAGCCTTGA+CGG + chr7_2:83373081-83373100 None:intergenic 45.0%
ATGTAGTGTGTGCTGGAATG+AGG + chr7_2:83373148-83373167 None:intergenic 45.0%
TGAGATGCTTATTGCTGCAG+TGG - chr7_2:83373867-83373886 Msa1083130:intron 45.0%
GAGATGCTTATTGCTGCAGT+GGG - chr7_2:83373868-83373887 Msa1083130:intron 45.0%
TCAACTTCAAAGCATGCCCA+AGG + chr7_2:83373966-83373985 None:intergenic 45.0%
TTACCATGATACAGTCCACC+AGG - chr7_2:83373993-83374012 Msa1083130:intron 45.0%
ATAAAGTGAGACTCACCTGG+TGG + chr7_2:83374011-83374030 None:intergenic 45.0%
TCACGAACGTTTGTTCCGAT+TGG - chr7_2:83374214-83374233 Msa1083130:intron 45.0%
TTATCCATCTCTGGGCCAAT+CGG + chr7_2:83374232-83374251 None:intergenic 45.0%
GGCAGTGAACCAGAATTTGA+GGG + chr7_2:83374334-83374353 None:intergenic 45.0%
AGGCAGTGAACCAGAATTTG+AGG + chr7_2:83374335-83374354 None:intergenic 45.0%
! GCATCAGAGTTTGAAGCATC+AGG + chr7_2:83374355-83374374 None:intergenic 45.0%
ATTGGACACATCCACAAGCA+AGG + chr7_2:83374389-83374408 None:intergenic 45.0%
AGGAACTTCTTCTGGGTAAC+TGG + chr7_2:83374458-83374477 None:intergenic 45.0%
CCTTATCGATCACCTAAGAC+CGG + chr7_2:83374494-83374513 None:intergenic 45.0%
AGGAACATTCAGAGCTAGGT+TGG - chr7_2:83374511-83374530 Msa1083130:CDS 45.0%
!! ACATTCAGAGCTAGGTTGGT+TGG - chr7_2:83374515-83374534 Msa1083130:CDS 45.0%
!! CATTCAGAGCTAGGTTGGTT+GGG - chr7_2:83374516-83374535 Msa1083130:CDS 45.0%
!!! CCGTTTTGTTTGGTTGGGAA+TGG + chr7_2:83374711-83374730 None:intergenic 45.0%
!!! CATGGACCGTTTTGTTTGGT+TGG + chr7_2:83374717-83374736 None:intergenic 45.0%
AGTGGATAGGACACAACCAA+CGG + chr7_2:83374773-83374792 None:intergenic 45.0%
!!! TTTTTAAAAAAAAAAAAAAC+AGG + chr7_2:83372170-83372189 None:intergenic 5.0%
TTGGATTCATCGCACGCCAT+CGG + chr7_2:83370022-83370041 None:intergenic 50.0%
GTCTGTGTGTGTGTGGGAAT+TGG + chr7_2:83370041-83370060 None:intergenic 50.0%
GTGTGTGTCTGTGTGTGTGT+GGG + chr7_2:83370047-83370066 None:intergenic 50.0%
CACACACAGACACACACGTT+TGG - chr7_2:83370050-83370069 Msa1083130:three_prime_UTR 50.0%
!! ATGGCGACTGTTGTTGGCTT+CGG + chr7_2:83370191-83370210 None:intergenic 50.0%
! TCTCGGATCTGATTCTGGCT+AGG - chr7_2:83370261-83370280 Msa1083130:three_prime_UTR 50.0%
! CTCGGATCTGATTCTGGCTA+GGG - chr7_2:83370262-83370281 Msa1083130:three_prime_UTR 50.0%
AGCCAAAGCAATTGCACCGA+CGG + chr7_2:83370385-83370404 None:intergenic 50.0%
GGAAGGTCAAAATGGGGTGA+AGG - chr7_2:83370712-83370731 Msa1083130:CDS 50.0%
TACCCGTGCAATCACAAGAG+TGG - chr7_2:83371511-83371530 Msa1083130:intron 50.0%
ACCCGTGCAATCACAAGAGT+GGG - chr7_2:83371512-83371531 Msa1083130:intron 50.0%
TCCCACTCTTGTGATTGCAC+GGG + chr7_2:83371516-83371535 None:intergenic 50.0%
GTGCAATCACAAGAGTGGGA+AGG - chr7_2:83371516-83371535 Msa1083130:intron 50.0%
CGAACCCACTTAGTGGGATA+AGG - chr7_2:83371713-83371732 Msa1083130:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr7_2:83371721-83371740 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr7_2:83371718-83371737 Msa1083130:intron 50.0%
! GGGATAAGGCTTGGTTGTTG+TGG - chr7_2:83371727-83371746 Msa1083130:intron 50.0%
CCCATGCTAGACAAAGTGAC+AGG + chr7_2:83371935-83371954 None:intergenic 50.0%
!! CTTTGTCTAGCATGGGTTGG+TGG - chr7_2:83371939-83371958 Msa1083130:intron 50.0%
AGAGGCTAGGATGACACATG+TGG - chr7_2:83372198-83372217 Msa1083130:intron 50.0%
GAACAGAGCAAAGCCTTGAC+GGG + chr7_2:83373080-83373099 None:intergenic 50.0%
TGTGTGCTGGAATGAGGACA+CGG + chr7_2:83373142-83373161 None:intergenic 50.0%
TGCAAAGTCGGGATTCATCC+AGG - chr7_2:83373801-83373820 Msa1083130:intron 50.0%
GCTAATATAGGTGGATCCCG+TGG - chr7_2:83373928-83373947 Msa1083130:CDS 50.0%
!! TCACCTGGTGGACTGTATCA+TGG + chr7_2:83373999-83374018 None:intergenic 50.0%
AACCACAGTGAAGGGGAAGA+AGG - chr7_2:83374175-83374194 Msa1083130:intron 50.0%
TTCCTTCTTCCCCTTCACTG+TGG + chr7_2:83374180-83374199 None:intergenic 50.0%
GTGAAGGGGAAGAAGGAACA+AGG - chr7_2:83374182-83374201 Msa1083130:intron 50.0%
CTGCTGCAGGAACTTCTTCT+GGG + chr7_2:83374465-83374484 None:intergenic 50.0%
TCTGCTGCAGGAACTTCTTC+TGG + chr7_2:83374466-83374485 None:intergenic 50.0%
GTTCCTGCAGCAGATAAAGC+CGG - chr7_2:83374472-83374491 Msa1083130:intron 50.0%
CAGCAGATAAAGCCGGTCTT+AGG - chr7_2:83374479-83374498 Msa1083130:intron 50.0%
CCGGTCTTAGGTGATCGATA+AGG - chr7_2:83374491-83374510 Msa1083130:CDS 50.0%
CGTGTGTGTCTGTGTGTGTG+TGG + chr7_2:83370048-83370067 None:intergenic 55.0%
! CACGTTTGGGTTATCGGGTG+TGG - chr7_2:83370064-83370083 Msa1083130:three_prime_UTR 55.0%
! GTTTGGGTTATCGGGTGTGG+TGG - chr7_2:83370067-83370086 Msa1083130:three_prime_UTR 55.0%
CACCGTCGGTGCAATTGCTT+TGG - chr7_2:83370380-83370399 Msa1083130:three_prime_UTR 55.0%
! ACTAAGTGGGTTCGGCTGCA+TGG + chr7_2:83371707-83371726 None:intergenic 55.0%
ATGCAGCCGAACCCACTTAG+TGG - chr7_2:83371706-83371725 Msa1083130:intron 55.0%
TGCAGCCGAACCCACTTAGT+GGG - chr7_2:83371707-83371726 Msa1083130:intron 55.0%
GACACATGTGGCCCACTGTA+TGG - chr7_2:83372210-83372229 Msa1083130:intron 55.0%
AAGCAGCTTCGTCAGCATCC+TGG + chr7_2:83373822-83373841 None:intergenic 55.0%
AAGGCTAGCGGTCAAACCAC+GGG + chr7_2:83373947-83373966 None:intergenic 55.0%
CAAGGCTAGCGGTCAAACCA+CGG + chr7_2:83373948-83373967 None:intergenic 55.0%
!! GTGGTTTGACCGCTAGCCTT+GGG - chr7_2:83373947-83373966 Msa1083130:CDS 55.0%
CAAAGCATGCCCAAGGCTAG+CGG + chr7_2:83373959-83373978 None:intergenic 55.0%
! TGTTCCGATTGGCCCAGAGA+TGG - chr7_2:83374225-83374244 Msa1083130:intron 55.0%
! AGACCGGCTTTATCTGCTGC+AGG + chr7_2:83374478-83374497 None:intergenic 55.0%
TGGGAATGGAGGCTGACAAC+CGG + chr7_2:83374697-83374716 None:intergenic 55.0%
!! CTAGCATGGGTTGGTGGTCC+TGG - chr7_2:83371945-83371964 Msa1083130:intron 60.0%
! CGTGGTTTGACCGCTAGCCT+TGG - chr7_2:83373946-83373965 Msa1083130:CDS 60.0%
GGGAATGGAGGCTGACAACC+GGG + chr7_2:83374696-83374715 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 83370001 83374972 83370001 ID=Msa1083130;Name=Msa1083130
chr7_2 mRNA 83370001 83374972 83370001 ID=Msa1083130-mRNA-1;Parent=Msa1083130;Name=Msa1083130-mRNA-1;_AED=0.04;_eAED=0.04;_QI=332|1|1|1|1|1|6|468|420
chr7_2 exon 83370001 83370831 83370001 ID=Msa1083130-mRNA-1:exon:21834;Parent=Msa1083130-mRNA-1
chr7_2 exon 83370959 83371192 83370959 ID=Msa1083130-mRNA-1:exon:21833;Parent=Msa1083130-mRNA-1
chr7_2 exon 83372413 83372698 83372413 ID=Msa1083130-mRNA-1:exon:21832;Parent=Msa1083130-mRNA-1
chr7_2 exon 83372919 83373068 83372919 ID=Msa1083130-mRNA-1:exon:21831;Parent=Msa1083130-mRNA-1
chr7_2 exon 83373899 83373972 83373899 ID=Msa1083130-mRNA-1:exon:21830;Parent=Msa1083130-mRNA-1
chr7_2 exon 83374485 83374972 83374485 ID=Msa1083130-mRNA-1:exon:21829;Parent=Msa1083130-mRNA-1
chr7_2 five_prime_UTR 83374641 83374972 83374641 ID=Msa1083130-mRNA-1:five_prime_utr;Parent=Msa1083130-mRNA-1
chr7_2 CDS 83374485 83374640 83374485 ID=Msa1083130-mRNA-1:cds;Parent=Msa1083130-mRNA-1
chr7_2 CDS 83373899 83373972 83373899 ID=Msa1083130-mRNA-1:cds;Parent=Msa1083130-mRNA-1
chr7_2 CDS 83372919 83373068 83372919 ID=Msa1083130-mRNA-1:cds;Parent=Msa1083130-mRNA-1
chr7_2 CDS 83372413 83372698 83372413 ID=Msa1083130-mRNA-1:cds;Parent=Msa1083130-mRNA-1
chr7_2 CDS 83370959 83371192 83370959 ID=Msa1083130-mRNA-1:cds;Parent=Msa1083130-mRNA-1
chr7_2 CDS 83370469 83370831 83370469 ID=Msa1083130-mRNA-1:cds;Parent=Msa1083130-mRNA-1
chr7_2 three_prime_UTR 83370001 83370468 83370001 ID=Msa1083130-mRNA-1:three_prime_utr;Parent=Msa1083130-mRNA-1
Gene Sequence

>Msa1083130

ATGGGGGTACTGCTTCCGCTTTTTTTCTATGTCATCGCTTTCTTTTGCACCGTCGGTGCAATTGCTTTGGCTATTCTTCACATTTACAGACACCTTCTCAATTATACTGAACCTACTTATCAACGTTTCATTGTTCGCATCGTTTTCATGGTTCCGGTTTATGCACTGATGTCTTTCTTGTCCCTTGTTTTACCGCGGCTTTCAATCTACTTTAATTCAATCCGTGAAGTCTATGAAGCTTGGGTCATTTACAATTTCCTGTCACTTTGTCTAGCATGGGTTGGTGGTCCTGGATCAGTTGTTATAAGTTTGAGTGGTCGGGTTCTGAAGCCGTCAGTCTGTCTGATGACTTGTTGCTTTCCTCCTATACCTTTGGATGGGCGTTTCATACGTAAGTGCAAGCAAGGGTGTTTGCAGTTTGTGATTTTGAAGCCCATTTTAGTTGTTGTTACACTTATTCTTTACGCTAAGGGGAAATACAAGGATGGGAATTTCAATCCAAAGCAGTCATACTTGTATCTCACAATCATCTATACATTCTCATATACAATGGCTCTCTATGCTCTTGCATTGTTTTACGTGGCATGCAAGGATCTGCTTCAGCCATTCAATCCAGTCCCAAAGTTTATTATCATAAAGTCTGTTGTATTCCTTACTTACTGGCAGGGGGTGCTGTTCTTTCTTGCTGCAAAGTCGGGATTCATCCAGGATGCTGACGAAGCTGCTTTACTTCAAAATTTTATCATTTGTGTTGAGATGCTTATTGCTGCAGTGGGCCACTTTTATGCATTTCCATACAAAGAATATGCTGGAGCTAATATAGGTGGATCCCGTGGTTTGACCGCTAGCCTTGGGCATGCTTTGAAGTTGAATGACTTTTACCATGATACAGTCCACCAGTTCGCACCAACGTATCATGATTATGTTCTTTACAACCACAGTGAAGGGGAAGAAGGAACAAGGAAGTACAGGTCACGAACGTTTGTTCCGATTGGCCCAGAGATGGATAATGTGAGAAAAAATAAGCATATAACTGGAAACAAGGTAGATGACATACAACTAACAAGCTTCTCTTCTGATAGTAGTACTCCCTCAAATTCTGGTTCACTGCCTGATGCTTCAAACTCTGATGCAATCAAATCTTCCTTGCTTGTGGATGTGTCCAATTCTGCGTCCATACCATATGATTTGACACTTATTGACTTGGATGTATCCAGTTACCCAGAAGAAGTTCCTGCAGCAGATAAAGCCGGTCTTAGGTGA
Protein sequence

>Msa1083130

MGVLLPLFFYVIAFFCTVGAIALAILHIYRHLLNYTEPTYQRFIVRIVFMVPVYALMSFLSLVLPRLSIYFNSIREVYEAWVIYNFLSLCLAWVGGPGSVVISLSGRVLKPSVCLMTCCFPPIPLDGRFIRKCKQGCLQFVILKPILVVVTLILYAKGKYKDGNFNPKQSYLYLTIIYTFSYTMALYALALFYVACKDLLQPFNPVPKFIIIKSVVFLTYWQGVLFFLAAKSGFIQDADEAALLQNFIICVEMLIAAVGHFYAFPYKEYAGANIGGSRGLTASLGHALKLNDFYHDTVHQFAPTYHDYVLYNHSEGEEGTRKYRSRTFVPIGPEMDNVRKNKHITGNKVDDIQLTSFSSDSSTPSNSGSLPDASNSDAIKSSLLVDVSNSASIPYDLTLIDLDVSSYPEEVPAADKAGLR*