AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0648440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648440 MtrunA17_Chr4g0039801 99.737 1142 3 0 1 1142 1 1142 0.0 2368
Msa0648440 MtrunA17_Chr5g0410641 75.358 1116 249 8 43 1142 16 1121 0.0 1747
Msa0648440 MtrunA17_Chr1g0165411 71.989 1121 272 13 29 1142 20 1105 0.0 1665
Msa0648440 MtrunA17_Chr1g0165421 70.018 1124 310 11 29 1142 27 1133 0.0 1631
Msa0648440 MtrunA17_Chr7g0269741 66.109 1136 332 17 35 1142 61 1171 0.0 1473
Msa0648440 MtrunA17_Chr2g0297351 69.726 948 265 9 202 1140 88 1022 0.0 1413
Msa0648440 MtrunA17_Chr7g0274751 75.161 934 76 12 206 1139 30 807 0.0 1362
Msa0648440 MtrunA17_Chr7g0274751 93.939 33 2 0 106 138 1 33 2.52e-11 68.2
Msa0648440 MtrunA17_Chr4g0073711 48.950 952 388 19 188 1128 157 1021 0.0 876
Msa0648440 MtrunA17_Chr8g0383701 47.739 951 362 19 237 1133 215 1084 0.0 853
Msa0648440 MtrunA17_Chr8g0379241 45.506 1057 444 25 119 1128 1 972 0.0 849
Msa0648440 MtrunA17_Chr2g0284211 44.656 1048 430 20 132 1128 12 960 0.0 849
Msa0648440 MtrunA17_Chr3g0088821 50.169 887 333 17 272 1128 254 1061 0.0 845
Msa0648440 MtrunA17_Chr2g0296991 42.740 1102 453 25 111 1128 20 1027 0.0 838
Msa0648440 MtrunA17_Chr8g0352231 48.950 905 353 14 254 1128 236 1061 0.0 836
Msa0648440 MtrunA17_Chr3g0137951 46.908 938 384 17 220 1128 217 1069 0.0 828
Msa0648440 MtrunA17_Chr1g0201731 47.385 937 383 17 237 1135 223 1087 0.0 816
Msa0648440 MtrunA17_Chr1g0183381 46.837 901 392 15 233 1127 67 886 0.0 814
Msa0648440 MtrunA17_Chr3g0078671 41.204 1080 477 20 124 1128 36 1032 0.0 795
Msa0648440 MtrunA17_Chr7g0267731 47.013 904 369 16 257 1128 144 969 0.0 792
Msa0648440 MtrunA17_Chr8g0364641 42.160 1065 485 30 90 1128 5 964 0.0 787
Msa0648440 MtrunA17_Chr2g0322371 29.060 819 429 18 318 1119 47 730 8.28e-104 344
Msa0648440 MtrunA17_Chr2g0322361 31.421 802 398 27 318 1100 52 720 2.15e-102 340
Msa0648440 MtrunA17_Chr4g0046401 29.621 844 444 18 289 1119 24 730 3.16e-100 334
Msa0648440 MtrunA17_Chr4g0025201 28.434 830 451 19 305 1121 37 736 4.33e-96 323
Msa0648440 MtrunA17_Chr2g0322351 30.025 806 414 20 318 1109 49 718 1.50e-95 321
Msa0648440 MtrunA17_Chr3g0126641 68.664 217 52 4 649 856 1 210 3.87e-95 301
Msa0648440 MtrunA17_Chr1g0186381 27.566 867 457 25 280 1120 9 730 7.96e-87 297
Msa0648440 MtrunA17_Chr3g0102541 27.850 851 466 21 288 1126 21 735 1.05e-80 280
Msa0648440 MtrunA17_Chr2g0307191 27.078 842 446 21 269 1104 12 691 3.50e-79 275
Msa0648440 MtrunA17_Chr3g0102531 35.198 429 207 11 288 712 21 382 3.12e-72 256
Msa0648440 MtrunA17_Chr3g0102531 26.496 351 243 7 784 1123 382 728 3.49e-25 112
Msa0648440 MtrunA17_Chr3g0102551 35.648 432 208 11 285 712 28 393 3.57e-71 253
Msa0648440 MtrunA17_Chr3g0102551 31.132 212 145 1 822 1032 428 639 1.04e-24 111
Msa0648440 MtrunA17_Chr2g0298581 25.000 824 457 19 289 1103 19 690 1.60e-66 238
Msa0648440 MtrunA17_Chr2g0322341 33.889 360 168 7 320 678 53 343 2.14e-59 208
Msa0648440 MtrunA17_Chr3g0095791 27.072 543 317 14 574 1104 215 690 2.65e-50 190
Msa0648440 MtrunA17_Chr3g0095791 34.101 217 123 6 285 497 15 215 5.41e-29 124
Msa0648440 MtrunA17_Chr3g0077511 26.186 527 310 10 591 1104 233 693 9.73e-49 186
Msa0648440 MtrunA17_Chr3g0077511 33.333 213 123 6 289 497 19 216 1.33e-28 123
Msa0648440 MtrunA17_Chr2g0322331 28.344 314 195 6 804 1100 51 351 3.41e-30 124
Msa0648440 MtrunA17_Chr2g0307241 40.000 185 84 6 269 453 12 169 3.57e-30 119
Msa0648440 MtrunA17_Chr0c03g0490021 44.355 124 67 1 973 1096 1 122 2.05e-29 114
Msa0648440 MtrunA17_Chr3g0126661 49.573 117 41 5 220 336 5 103 1.26e-23 100
Msa0648440 MtrunA17_Chr7g0227271 37.791 172 60 4 218 385 25 153 1.66e-23 98.2
Msa0648440 MtrunA17_Chr3g0126651 75.000 56 14 0 558 613 16 71 5.35e-22 90.9
Msa0648440 MtrunA17_Chr8g0355061 63.158 57 21 0 973 1029 1 57 2.10e-20 85.9
Msa0648440 MtrunA17_Chr7g0252781 60.377 53 21 0 1076 1128 19 71 8.08e-15 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648440 AT3G03050.1 83.947 1140 173 7 9 1142 10 1145 0.0 2013
Msa0648440 AT5G16910.1 82.635 1146 187 5 4 1142 5 1145 0.0 1969
Msa0648440 AT4G38190.1 72.554 1104 266 12 30 1128 21 1092 0.0 1677
Msa0648440 AT1G02730.1 64.842 1169 352 16 10 1142 36 1181 0.0 1509
Msa0648440 AT2G33100.2 70.483 952 256 9 198 1137 95 1033 0.0 1431
Msa0648440 AT2G33100.1 70.483 952 256 9 198 1137 95 1033 0.0 1431
Msa0648440 AT1G32180.1 66.369 895 283 7 258 1141 91 978 0.0 1248
Msa0648440 AT1G32180.2 66.369 895 283 7 258 1141 91 978 0.0 1248
Msa0648440 AT5G09870.1 42.703 1110 438 24 124 1128 36 1052 0.0 862
Msa0648440 AT5G05170.1 50.847 885 329 16 272 1128 242 1048 0.0 861
Msa0648440 AT2G25540.1 44.152 1103 443 27 124 1135 30 1050 0.0 858
Msa0648440 AT5G17420.1 49.160 893 360 16 248 1128 199 1009 0.0 855
Msa0648440 AT5G64740.1 45.079 1016 412 20 167 1128 144 1067 0.0 851
Msa0648440 AT5G44030.1 43.550 1093 435 24 132 1128 26 1032 0.0 849
Msa0648440 AT4G18780.1 43.928 1054 435 22 132 1128 12 966 0.0 845
Msa0648440 AT4G32410.1 48.136 939 369 20 220 1128 213 1063 0.0 845
Msa0648440 AT2G21770.1 46.590 953 367 17 238 1133 208 1075 0.0 837
Msa0648440 AT5G44030.2 48.026 912 342 14 272 1128 227 1061 0.0 837
Msa0648440 AT4G39350.1 47.368 893 360 14 266 1128 254 1066 0.0 804
Msa0648440 AT5G44030.3 48.470 817 294 13 367 1128 9 753 0.0 755
Msa0648440 AT2G32530.1 30.498 823 406 24 273 1064 10 697 1.12e-100 336
Msa0648440 AT2G32620.1 30.130 843 424 28 306 1117 40 748 4.58e-99 332
Msa0648440 AT4G15320.5 29.371 858 447 24 273 1102 10 736 7.80e-96 323
Msa0648440 AT2G32610.1 30.057 875 431 32 293 1124 21 757 8.50e-96 323
Msa0648440 AT4G15320.3 29.487 858 446 24 273 1102 10 736 1.08e-95 322
Msa0648440 AT4G15320.4 29.466 862 456 25 273 1102 10 751 9.24e-95 320
Msa0648440 AT2G32540.1 29.020 765 402 17 313 1059 48 689 8.58e-94 317
Msa0648440 AT2G32620.3 31.647 692 326 23 306 983 40 598 3.73e-93 311
Msa0648440 AT2G32620.4 30.620 774 384 26 375 1117 1 652 7.79e-92 309
Msa0648440 AT4G15290.1 29.442 771 389 21 313 1059 48 687 2.47e-91 310
Msa0648440 AT2G32620.2 32.149 619 285 20 306 916 40 531 2.17e-85 288
Msa0648440 AT4G15320.2 28.055 802 383 22 273 1023 10 668 1.52e-80 281
Msa0648440 AT4G15320.1 27.683 820 406 23 273 1023 10 711 4.43e-79 278
Msa0648440 AT1G55850.1 36.160 401 177 9 317 712 65 391 1.78e-66 239
Msa0648440 AT1G55850.1 27.036 307 213 6 819 1117 417 720 2.35e-23 107
Msa0648440 AT4G24010.1 35.862 435 204 11 287 716 25 389 6.98e-66 238
Msa0648440 AT4G24010.1 30.403 273 179 5 805 1067 402 673 1.28e-29 127
Msa0648440 AT4G23990.1 38.551 345 157 6 369 712 116 406 2.03e-62 228
Msa0648440 AT4G23990.1 28.662 314 212 6 813 1119 434 742 1.54e-31 133
Msa0648440 AT4G24000.1 31.944 432 218 8 287 716 22 379 3.72e-59 218
Msa0648440 AT4G24000.1 26.582 316 216 8 814 1120 406 714 2.91e-28 122
Msa0648440 AT4G23990.2 28.662 314 212 6 813 1119 220 528 2.31e-31 130
Msa0648440 AT4G23990.2 38.350 206 111 4 508 712 2 192 5.78e-31 129
Msa0648440 AT4G24000.2 36.667 210 108 4 508 716 2 187 2.48e-29 124
Msa0648440 AT4G24000.2 26.899 316 215 9 814 1120 214 522 3.51e-28 121

Find 318 sgRNAs with CRISPR-Local

Find 437 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACAATTCTCGAAGAAATT+TGG 0.083180 4_3:-54900554 Msa0648440:CDS
TTTAGAAGGTTTGCTCTTTA+TGG 0.101361 4_3:-54900722 Msa0648440:CDS
TGTCTATAGTTTGTGAATTA+TGG 0.184274 4_3:-54902267 Msa0648440:CDS
CCAAGTGACGAGCCTCTTAT+TGG 0.188601 4_3:-54901145 Msa0648440:CDS
GCCGGTAGTGCTTGTAATTT+TGG 0.215939 4_3:-54905014 Msa0648440:five_prime_UTR
TCAAGTTCTGTGTTCTTATA+TGG 0.231354 4_3:+54903181 None:intergenic
GAATTGCAGGATATTAATTT+AGG 0.236683 4_3:-54903749 Msa0648440:intron
CTGCTAGCTTTGCTAATAAC+TGG 0.239243 4_3:-54901946 Msa0648440:CDS
CACAATTCTCGAAGAAATTT+GGG 0.254749 4_3:-54900553 Msa0648440:CDS
AGTAAATAATAAATATTTCT+TGG 0.255897 4_3:+54899220 None:intergenic
CTGAAGAAATTTCATTCTTC+GGG 0.263526 4_3:+54900121 None:intergenic
CTGCTCATTTGTAATGATTT+CGG 0.270301 4_3:+54903700 None:intergenic
CTACGATCCTTCACGAAATC+AGG 0.281388 4_3:+54901833 None:intergenic
TTTAAGCTGAAGTATGATTC+AGG 0.288122 4_3:+54901884 None:intergenic
GACTTTCCTGTAGGATTGTT+AGG 0.288935 4_3:+54902145 None:intergenic
ATGGATAAATTCCAACATTA+AGG 0.302386 4_3:+54900087 None:intergenic
TGAAACATCAGAGACAAAAT+AGG 0.307298 4_3:-54901703 Msa0648440:CDS
CCTCAAACCTTTGAGGGAAT+TGG 0.310418 4_3:+54900855 None:intergenic
CAGTCGAGGTTAAGTATAAA+AGG 0.311934 4_3:+54900962 None:intergenic
TCTGAAGAAATTTCATTCTT+CGG 0.312803 4_3:+54900120 None:intergenic
AAAGAGGCTTCGTACCGATA+TGG 0.318012 4_3:+54902848 None:intergenic
CTCTTGTGTTGTTCCTGCAC+TGG 0.319012 4_3:-54902333 Msa0648440:CDS
CATCTAGCTGCCGTGCTTCA+AGG 0.325137 4_3:-54899843 Msa0648440:CDS
TCTTGCTATGTTTCTGATGA+TGG 0.327737 4_3:-54902004 Msa0648440:CDS
GAAAGATGCGCGGTCTTCTT+TGG 0.328423 4_3:+54900682 None:intergenic
TATATAGATGCAGTGAAAAT+AGG 0.334238 4_3:-54903232 Msa0648440:CDS
AGATCTGTAGAACGATTTAC+TGG 0.334409 4_3:+54902202 None:intergenic
CCTGTAGGATTGTTAGGACT+TGG 0.340116 4_3:+54902151 None:intergenic
CTTTCTGTAGTTGTTGCTTT+GGG 0.345629 4_3:-54900664 Msa0648440:CDS
CAGCGTGTTGGATGGATCTA+TGG 0.346588 4_3:-54900338 Msa0648440:CDS
CCTGCACTGTCCCTCTTCTC+TGG 0.348700 4_3:-54900029 Msa0648440:CDS
CCACAGATGGCTGGTGCAAA+AGG 0.351106 4_3:-54903358 Msa0648440:CDS
GGCTCTAACCAATGCATTCA+TGG 0.354035 4_3:+54901006 None:intergenic
AATTATGGTTTGCTTTCTCT+TGG 0.355498 4_3:-54902252 Msa0648440:CDS
TGGCCAAAGGAAGGGGATTT+CGG 0.355911 4_3:-54902971 Msa0648440:CDS
ATACGGATGCAGTCTGGTTA+TGG 0.356092 4_3:-54902294 Msa0648440:CDS
CACTGAGTTGTTGAGTCAAA+AGG 0.360198 4_3:+54899341 None:intergenic
GAACCGGCTGTCTGTTTAGA+AGG 0.363424 4_3:-54900736 Msa0648440:CDS
GATCTCATTGGCCAGGGACT+TGG 0.363673 4_3:-54901625 Msa0648440:CDS
ATCTTCAACTTCCTTGTTAG+TGG 0.370383 4_3:+54902890 None:intergenic
GGTGGAGAAATGAGCAGTTT+TGG 0.370436 4_3:-54899887 Msa0648440:CDS
TATTCCTGGCTGTGATTCTA+AGG 0.372247 4_3:-54903323 Msa0648440:CDS
GAAACATCAGAGACAAAATA+GGG 0.374954 4_3:-54901702 Msa0648440:CDS
CCACTGGAATTGAGTCAATA+AGG 0.376702 4_3:+54900519 None:intergenic
TCTTTCTGTAGTTGTTGCTT+TGG 0.377041 4_3:-54900665 Msa0648440:CDS
TTATATGGCTCTTTGCATCC+TGG 0.379237 4_3:+54903196 None:intergenic
ATTGGAATGAACCGCCTATC+TGG 0.379517 4_3:+54899436 None:intergenic
ACAGGAAAGTCTGATCTTCC+AGG 0.381120 4_3:-54902133 Msa0648440:CDS
CTGTGGTATGGTACTGTATA+TGG 0.381309 4_3:+54899641 None:intergenic
TGACCATGCTGGCATAATTC+AGG 0.385671 4_3:-54901573 Msa0648440:intron
TTCACCTTGACTTCAAAATC+TGG 0.386447 4_3:-54899786 Msa0648440:CDS
TGAGCTATCATCATGGGAAT+TGG 0.386882 4_3:+54899418 None:intergenic
ACAAGTGGTGGTTCTTTCTC+AGG 0.387209 4_3:+54902082 None:intergenic
TGAACCTTTATAGGCTCAAC+AGG 0.387620 4_3:+54901671 None:intergenic
TATTACCCGTGCACATCTAA+TGG 0.387787 4_3:-54903410 Msa0648440:CDS
TACGGATGCAGTCTGGTTAT+GGG 0.391001 4_3:-54902293 Msa0648440:CDS
TTTGAAACAAAGGGGACATA+TGG 0.392709 4_3:-54903010 Msa0648440:CDS
CAATCATCATATCACTCCTC+TGG 0.393066 4_3:-54899488 Msa0648440:CDS
GGGTCGAAATGTGCTATTCC+TGG 0.393677 4_3:-54903337 Msa0648440:CDS
CATACCTTCCCTCATTGCTT+TGG 0.393894 4_3:+54900919 None:intergenic
TATATGGCTCTTTGCATCCT+GGG 0.396880 4_3:+54903197 None:intergenic
TTTCCGAAATCCCCTTCCTT+TGG 0.396984 4_3:+54902968 None:intergenic
GGTTTACTCAAAGTCGTTGC+AGG 0.397549 4_3:-54899822 Msa0648440:CDS
GGTTGCATCAGGTTCTTAGA+TGG 0.399286 4_3:-54900196 Msa0648440:CDS
AGGATGTGGTCACTGGTTAT+AGG 0.400288 4_3:-54900304 Msa0648440:CDS
TGGTCTGGTTTGGTCTGGTC+AGG 0.403964 4_3:+54904913 None:intergenic
ATTTCGTGAAGGATCGTAGA+AGG 0.405871 4_3:-54901829 Msa0648440:CDS
CCACAGTGGAGCCGTTTACT+AGG 0.414674 4_3:-54899624 Msa0648440:CDS
AAATGTTACGGTTGGATGTA+AGG 0.415264 4_3:+54903630 None:intergenic
CTTCCACTTCCTCCACCAAA+TGG 0.415305 4_3:-54903130 Msa0648440:CDS
TTCCACTTCCTCCACCAAAT+GGG 0.415672 4_3:-54903129 Msa0648440:CDS
TTCACCATCATGATTACAAT+TGG 0.416130 4_3:+54899696 None:intergenic
TCATCAGCATTTCCAATAAG+AGG 0.422226 4_3:+54901133 None:intergenic
AAGGAAGGGGATTTCGGAAA+TGG 0.422255 4_3:-54902965 Msa0648440:CDS
CGATGGTTGTTTGAAACAAA+GGG 0.424075 4_3:-54903019 Msa0648440:CDS
CCTGTTCTCTTCTGAGGTGT+TGG 0.424667 4_3:+54900622 None:intergenic
TAGCAAGAAAGCTTCTCAAC+TGG 0.431099 4_3:+54902019 None:intergenic
CTCGCTATCAAGATCATCTC+TGG 0.432065 4_3:+54903570 None:intergenic
ACGATTTACTGGGCATAGCT+TGG 0.434973 4_3:+54902213 None:intergenic
TTACATCCAACCGTAACATT+TGG 0.435589 4_3:-54903628 Msa0648440:CDS
ATATAAGAAGTGGTCTGGTT+TGG 0.436416 4_3:+54904903 None:intergenic
GTTTCAAGTTCTCTATTCAC+TGG 0.442653 4_3:-54903445 Msa0648440:CDS
GAGTTCAAGGTCAGAATCAA+TGG 0.444934 4_3:-54901788 Msa0648440:CDS
TTACAATTGGCGGTATCATA+AGG 0.446340 4_3:+54899709 None:intergenic
GATGAAGTGGCTGTGAATAA+TGG 0.446503 4_3:-54903160 Msa0648440:CDS
CGATTTACTGGGCATAGCTT+GGG 0.447505 4_3:+54902214 None:intergenic
CCAACACCTCAGAAGAGAAC+AGG 0.449199 4_3:-54900622 Msa0648440:CDS
AGAAAACACCGCCTAGTAAA+CGG 0.449652 4_3:+54899613 None:intergenic
TTGAGATCTATGTGTGAAAA+GGG 0.451569 4_3:+54904794 None:intergenic
GTATCCATAGGTTGGTTATC+CGG 0.451756 4_3:+54903499 None:intergenic
ATGGTTATGGCAATGCAATA+TGG 0.453385 4_3:-54902991 Msa0648440:CDS
CTCAACTTTCTGCGAGATTG+AGG 0.454526 4_3:+54903477 None:intergenic
CTGCTGTTCTCAGCCCATAT+CGG 0.455177 4_3:-54902862 Msa0648440:intron
GGCCCAGTCTATGTAGGAAC+CGG 0.456340 4_3:-54900752 Msa0648440:CDS
AAGAGGCTTCGTACCGATAT+GGG 0.460765 4_3:+54902849 None:intergenic
GTGTTATATAAGAAGTGGTC+TGG 0.463844 4_3:+54904898 None:intergenic
TTCCTTGTTAGTGGCCTCCA+TGG 0.464132 4_3:+54902899 None:intergenic
GTTAACATGAGAGCCCTTGA+TGG 0.465182 4_3:-54900782 Msa0648440:CDS
AGAGCCCTTGATGGACTTCA+AGG 0.467889 4_3:-54900773 Msa0648440:CDS
TTGCTGTGCTTGAAATTAAG+TGG 0.468667 4_3:-54899932 Msa0648440:CDS
TGCAATATGGCCAAAGGAAG+GGG 0.469151 4_3:-54902978 Msa0648440:CDS
CCAATAAGAGGCTCGTCACT+TGG 0.471601 4_3:+54901145 None:intergenic
TTGTGTTGTTCCTGCACTGG+AGG 0.472550 4_3:-54902330 Msa0648440:CDS
GCTGATGGATCTCATTGGCC+AGG 0.474596 4_3:-54901632 Msa0648440:CDS
GCGCTGATGAGAAGTCAAAC+TGG 0.475372 4_3:-54903058 Msa0648440:CDS
TGAACCTGTTGAGCCTATAA+AGG 0.476618 4_3:-54901675 Msa0648440:CDS
AGTTCTTCGGCCAAATGTTA+CGG 0.477640 4_3:+54903618 None:intergenic
TCAATACCCTCAAACCTTTG+AGG 0.479344 4_3:+54900848 None:intergenic
CAGGTTCTTAGATGGGCTAC+TGG 0.479590 4_3:-54900188 Msa0648440:CDS
AAGTATGATTCAGGATTCCT+AGG 0.480013 4_3:+54901893 None:intergenic
CAGCCGGTTCCTACATAGAC+TGG 0.480738 4_3:+54900749 None:intergenic
CTCCCATCAATCTCACTGAT+AGG 0.482130 4_3:-54900217 Msa0648440:CDS
ACTGAGTTGTTGAGTCAAAA+GGG 0.482370 4_3:+54899342 None:intergenic
ACAAAGGGGACATATGGTTA+TGG 0.484592 4_3:-54903004 Msa0648440:CDS
GATGATCTTGATAGCGAGCT+AGG 0.485096 4_3:-54903565 Msa0648440:CDS
GTTTCTAGAGAGAAACGTCC+AGG 0.486844 4_3:-54901055 Msa0648440:CDS
TCTCACTGATAGGTTGCATC+AGG 0.486920 4_3:-54900207 Msa0648440:CDS
TAGGCTCGATATCATGTTTG+CGG 0.489488 4_3:+54901912 None:intergenic
CTACCTTGGAACTGTGCCAC+TGG 0.489823 4_3:+54900503 None:intergenic
CAACCTATCAGTGAGATTGA+TGG 0.492695 4_3:+54900214 None:intergenic
CTCTAGAAACATAAACAAGA+AGG 0.493620 4_3:+54901068 None:intergenic
TATCTTATAATCACACTCAC+AGG 0.494707 4_3:+54903267 None:intergenic
TACAATTGGCGGTATCATAA+GGG 0.495010 4_3:+54899710 None:intergenic
CAATTCCCTCAAAGGTTTGA+GGG 0.496074 4_3:-54900854 Msa0648440:CDS
AGAGAACAGGGCACTAAGGA+TGG 0.496324 4_3:-54900609 Msa0648440:CDS
CAATACCCTCAAACCTTTGA+GGG 0.496350 4_3:+54900849 None:intergenic
GCGTGAGTATGATGAGTTCA+AGG 0.499184 4_3:-54901801 Msa0648440:CDS
AGAAGTGGTCTGGTTTGGTC+TGG 0.499765 4_3:+54904908 None:intergenic
CCAATTCCCTCAAAGGTTTG+AGG 0.503080 4_3:-54900855 Msa0648440:CDS
AGGATAGCATACCTTAATGT+TGG 0.504124 4_3:-54900098 Msa0648440:CDS
CACTCAAGGGGTGACCATGC+TGG 0.505226 4_3:-54901584 Msa0648440:CDS
TACAGATCTTAATGTTCTGA+AGG 0.506905 4_3:-54902188 Msa0648440:CDS
ATAAGAGGCTCGTCACTTGG+AGG 0.511311 4_3:+54901148 None:intergenic
GTTACTGAGGATGTGGTCAC+TGG 0.513628 4_3:-54900311 Msa0648440:CDS
TTTGAGATCTATGTGTGAAA+AGG 0.514910 4_3:+54904793 None:intergenic
ACCAAAATTACAAGCACTAC+CGG 0.514923 4_3:+54905013 None:intergenic
TTGTTAGTGGCCTCCATGGT+CGG 0.516200 4_3:+54902903 None:intergenic
GACGGATATCAACATCGGTC+AGG 0.516786 4_3:+54901095 None:intergenic
TAGTGCCCTGTTCTCTTCTG+AGG 0.517277 4_3:+54900616 None:intergenic
CGAGGTATAGTGAGAGCACC+AGG 0.517290 4_3:+54900440 None:intergenic
CCTATCTGGTCTGTACCGGC+TGG 0.517796 4_3:+54899450 None:intergenic
TTAGGATCAATCTTTGACCT+CGG 0.518076 4_3:-54903731 Msa0648440:five_prime_UTR
TCGATGGTTGTTTGAAACAA+AGG 0.518208 4_3:-54903020 Msa0648440:CDS
AAAGAGTGTTATATAAGAAG+TGG 0.518228 4_3:+54904893 None:intergenic
ACACTTCACCTGAGCACTCA+AGG 0.518949 4_3:-54901598 Msa0648440:CDS
TATGTGTGACCCTCCAGTGC+AGG 0.520114 4_3:+54902320 None:intergenic
TCTAGAAACATAAACAAGAA+GGG 0.520713 4_3:+54901069 None:intergenic
TGTGATTTCATGTTGGTATG+AGG 0.522119 4_3:-54900378 Msa0648440:CDS
CCAAGTCCTAACAATCCTAC+AGG 0.524144 4_3:-54902151 Msa0648440:CDS
TGGTCACCCCTTGAGTGCTC+AGG 0.524163 4_3:+54901590 None:intergenic
TGTGTTGTTCCTGCACTGGA+GGG 0.524336 4_3:-54902329 Msa0648440:CDS
GATCAGCAAGTGGCCTACCT+TGG 0.525030 4_3:+54900489 None:intergenic
CTTCGGCCAAATGTTACGGT+TGG 0.525516 4_3:+54903622 None:intergenic
TTTGGTGGAGGAAGTGGAAG+TGG 0.525761 4_3:+54903133 None:intergenic
GAACACAGAACTTGATGAAG+TGG 0.527152 4_3:-54903173 Msa0648440:CDS
GACAGAGAACGAGTAATCTT+CGG 0.528240 4_3:+54904986 None:intergenic
CCAGAGAAGAGGGACAGTGC+AGG 0.528514 4_3:+54900029 None:intergenic
GAATGCATTGGTTAGAGCCT+CGG 0.531865 4_3:-54901002 Msa0648440:CDS
ATCGACCGGATGAAGTTCTT+CGG 0.533914 4_3:+54903605 None:intergenic
ACCATCATGATTACAATTGG+CGG 0.535365 4_3:+54899699 None:intergenic
AGAAGAGGGACAGTGCAGGC+AGG 0.535477 4_3:+54900033 None:intergenic
TGGATCAGTTACTGAGGATG+TGG 0.535501 4_3:-54900318 Msa0648440:CDS
GGAAGGTATGTGCTTTATGA+TGG 0.536478 4_3:-54900906 Msa0648440:CDS
GTGCTTGAAATTAAGTGGTC+AGG 0.536523 4_3:-54899927 Msa0648440:CDS
CAGAAGAGAACAGGGCACTA+AGG 0.537635 4_3:-54900613 Msa0648440:CDS
CTGATCTGTATATTGTCAAA+TGG 0.537846 4_3:-54899737 Msa0648440:CDS
TCCACTTCCTCCACCAAATG+GGG 0.538875 4_3:-54903128 Msa0648440:CDS
TCACGCAAGAGAGGAAATCA+AGG 0.539271 4_3:-54901729 Msa0648440:CDS
TCTTTCAGCGTGTCTTGCAA+AGG 0.539840 4_3:-54904961 Msa0648440:five_prime_UTR
CACAGATGGCTGGTGCAAAA+GGG 0.540028 4_3:-54903357 Msa0648440:CDS
ATCATGATGGTGAACTTGAT+AGG 0.542613 4_3:-54899687 Msa0648440:CDS
AGACTTTGTCGATTTCATCA+AGG 0.542739 4_3:+54903081 None:intergenic
ATAGGAGATGGGATGTGCCC+AGG 0.542804 4_3:-54903214 Msa0648440:CDS
ATCTGGTCTGTACCGGCTGG+TGG 0.543265 4_3:+54899453 None:intergenic
ATGCAGTGAAAATAGGAGAT+GGG 0.544148 4_3:-54903225 Msa0648440:CDS
GATGCAGTGAAAATAGGAGA+TGG 0.544653 4_3:-54903226 Msa0648440:CDS
GACCTGCGACGGATAGAGTC+GGG 0.544788 4_3:+54901761 None:intergenic
CTGGGCCTTGAAGTCCATCA+AGG 0.544862 4_3:+54900768 None:intergenic
AACCTATCAGTGAGATTGAT+GGG 0.545416 4_3:+54900215 None:intergenic
CTTTATCCATTAGATGTGCA+CGG 0.545565 4_3:+54903404 None:intergenic
TTTGGCCGAAGAACTTCATC+CGG 0.545571 4_3:-54903610 Msa0648440:CDS
AAAGCAACATGGATGGCTGA+TGG 0.546687 4_3:-54901647 Msa0648440:CDS
AAAAGAATGAGCTATCATCA+TGG 0.547173 4_3:+54899411 None:intergenic
TGCTAGCTTTGCTAATAACT+GGG 0.547860 4_3:-54901945 Msa0648440:CDS
GTAAATCATCCACAGATGGC+TGG 0.551375 4_3:-54903367 Msa0648440:CDS
GAAGAATGAAATTTCTTCAG+AGG 0.551800 4_3:-54900118 Msa0648440:CDS
GAAGTGTTCAACCAAGTCCC+TGG 0.552003 4_3:+54901614 None:intergenic
GTTGCATCAGGTTCTTAGAT+GGG 0.553071 4_3:-54900195 Msa0648440:CDS
GATTTCGGAAATGGAAAAGA+TGG 0.553684 4_3:-54902956 Msa0648440:CDS
CACTTCACCTGAGCACTCAA+GGG 0.553733 4_3:-54901597 Msa0648440:CDS
TAAGTGGTCAGGAATTGAGC+TGG 0.554704 4_3:-54899916 Msa0648440:CDS
GCTATGTCCAATTCCCTCAA+AGG 0.554919 4_3:-54900862 Msa0648440:CDS
ATTAGCAAAGCTAGCAGCCT+CGG 0.555719 4_3:+54901952 None:intergenic
AAAGAATGAGCTATCATCAT+GGG 0.557305 4_3:+54899412 None:intergenic
TTTATCCATTAGATGTGCAC+GGG 0.557966 4_3:+54903405 None:intergenic
CATAAACAAGAAGGGGAAGA+CGG 0.558483 4_3:+54901077 None:intergenic
AGCTGGGGCCATGAATGCAT+TGG 0.558654 4_3:-54901014 Msa0648440:CDS
AAAGGTTTGATGGGAAGAAG+AGG 0.558986 4_3:-54899552 Msa0648440:CDS
CCAGCCGGTACAGACCAGAT+AGG 0.559093 4_3:-54899450 Msa0648440:CDS
CTTCAAGGCCCAGTCTATGT+AGG 0.559242 4_3:-54900758 Msa0648440:CDS
TAAACGGCTCCACTGTGGTA+TGG 0.560372 4_3:+54899629 None:intergenic
CACTCCGGATAACCAACCTA+TGG 0.561400 4_3:-54903503 Msa0648440:CDS
AAGGTTTGATGGGAAGAAGA+GGG 0.561777 4_3:-54899551 Msa0648440:CDS
CAATGAACTGTCCAGAGAAG+AGG 0.562988 4_3:+54900018 None:intergenic
GCGCGGTCTTCTTTGGCGCG+TGG 0.563034 4_3:+54900689 None:intergenic
GTTAAGTATAAAAGGACCGT+TGG 0.563607 4_3:+54900970 None:intergenic
ATATCATGTTTGCGGCAGAA+TGG 0.564407 4_3:+54901920 None:intergenic
GAAACAAAGATATCTATGCC+TGG 0.564484 4_3:+54902115 None:intergenic
GGTTATAGGATGCATAATAG+AGG 0.564782 4_3:-54900290 Msa0648440:CDS
TCAAGTTCTCTATTCACTGG+AGG 0.565971 4_3:-54903442 Msa0648440:CDS
TGCGAGATTGAGGTATCCAT+AGG 0.569033 4_3:+54903487 None:intergenic
ATATAACTCCAAAGCAATGA+GGG 0.569533 4_3:-54900927 Msa0648440:CDS
CAGGAATTGAGCTGGAAGAA+TGG 0.570277 4_3:-54899908 Msa0648440:CDS
TGCCCGACTCTATCCGTCGC+AGG 0.570541 4_3:-54901763 Msa0648440:CDS
AGATTGAGGTATCCATAGGT+TGG 0.571127 4_3:+54903491 None:intergenic
CACTTCCTCCACCAAATGGG+GGG 0.571997 4_3:-54903126 Msa0648440:CDS
TGCTATGTTTCTGATGATGG+AGG 0.573867 4_3:-54902001 Msa0648440:CDS
AATCATCATATCACTCCTCT+GGG 0.574992 4_3:-54899487 Msa0648440:CDS
CTAGAAACATAAACAAGAAG+GGG 0.575023 4_3:+54901070 None:intergenic
ACAACACAAGAGCAACCAAA+CGG 0.577597 4_3:+54902344 None:intergenic
ATAGGATGCATAATAGAGGA+TGG 0.578268 4_3:-54900286 Msa0648440:CDS
AATGTTACGGTTGGATGTAA+GGG 0.578477 4_3:+54903631 None:intergenic
CTGAATTGATGAGCCGACCA+TGG 0.579321 4_3:-54902916 Msa0648440:CDS
CTGATGGATCTCATTGGCCA+GGG 0.579469 4_3:-54901631 Msa0648440:CDS
AGCAGCTAAAATCGACAAGA+TGG 0.579662 4_3:+54902048 None:intergenic
TGTCTTGCAAAGGTGACAGT+TGG 0.580465 4_3:-54904951 Msa0648440:five_prime_UTR
GATGGGAGCAGTTCCGCGGA+AGG 0.581406 4_3:+54900232 None:intergenic
ATCACCTTAGAATCACAGCC+AGG 0.581701 4_3:+54903319 None:intergenic
GGTCGGCTCATCAATTCAGT+TGG 0.582914 4_3:+54902920 None:intergenic
AAGAAATTTCATTCTTCGGG+TGG 0.585093 4_3:+54900124 None:intergenic
AATGAACTGTCCAGAGAAGA+GGG 0.585838 4_3:+54900019 None:intergenic
ATTCCAGTGGCACAGTTCCA+AGG 0.587403 4_3:-54900506 Msa0648440:CDS
TTGTGATAATGATTTATGAA+AGG 0.587792 4_3:+54904756 None:intergenic
GTGTTTGCTGTGACAAGTGG+TGG 0.588452 4_3:+54902070 None:intergenic
CGGTCTTCTTTGGCGCGTGG+AGG 0.588737 4_3:+54900692 None:intergenic
GCCTCGGCTGTCATGTCCAA+CGG 0.589027 4_3:-54900986 Msa0648440:CDS
CATAGGTTGGTTATCCGGAG+TGG 0.589102 4_3:+54903504 None:intergenic
ATAGGTTGGTTATCCGGAGT+GGG 0.590129 4_3:+54903505 None:intergenic
ACTAAACGCGACGCCTTCCG+CGG 0.591532 4_3:-54900245 Msa0648440:CDS
ACGGATGCAGTCTGGTTATG+GGG 0.591620 4_3:-54902292 Msa0648440:CDS
CCACTTCCTCCACCAAATGG+GGG 0.592808 4_3:-54903127 Msa0648440:CDS
GGAGTAACTGATGTATCGAC+CGG 0.593019 4_3:+54903591 None:intergenic
AATGCAATATGGCCAAAGGA+AGG 0.593345 4_3:-54902980 Msa0648440:CDS
ATGCAATATGGCCAAAGGAA+GGG 0.595431 4_3:-54902979 Msa0648440:CDS
TATATAACTCCAAAGCAATG+AGG 0.595884 4_3:-54900928 Msa0648440:CDS
GAGAACAGGGCACTAAGGAT+GGG 0.596261 4_3:-54900608 Msa0648440:CDS
CTCAATCTCGCAGAAAGTTG+AGG 0.597849 4_3:-54903476 Msa0648440:CDS
GGATGGCTGATGGATCTCAT+TGG 0.599838 4_3:-54901637 Msa0648440:CDS
ACCGCCTATCTGGTCTGTAC+CGG 0.600209 4_3:+54899446 None:intergenic
AACTCCAAAGCAATGAGGGA+AGG 0.600336 4_3:-54900923 Msa0648440:CDS
TGAAGTAAATCATCCACAGA+TGG 0.601911 4_3:-54903371 Msa0648440:CDS
CCATCAGTGTGATTTCATGT+TGG 0.602601 4_3:-54900385 Msa0648440:CDS
GACCATGGAGGCCACTAACA+AGG 0.603471 4_3:-54902901 Msa0648440:CDS
CCAACATGAAATCACACTGA+TGG 0.603494 4_3:+54900385 None:intergenic
CAGTGGCACAGTTCCAAGGT+AGG 0.604559 4_3:-54900502 Msa0648440:CDS
TATGGGCTGAGAACAGCAGC+AGG 0.606682 4_3:+54902866 None:intergenic
GTTTGATGGGAAGAAGAGGG+AGG 0.608204 4_3:-54899548 Msa0648440:CDS
AGTGGGGACAGCGTGTTGGA+TGG 0.609266 4_3:-54900346 Msa0648440:CDS
GTGATTAGCATATCTATCAG+AGG 0.610027 4_3:+54900823 None:intergenic
CATGTTAACATCAAAGAAGA+CGG 0.610600 4_3:+54900796 None:intergenic
ACCTTGACTTCAAAATCTGG+CGG 0.612483 4_3:-54899783 Msa0648440:CDS
AGCCGGTTCCTACATAGACT+GGG 0.616227 4_3:+54900750 None:intergenic
ACTGAGTGGGGACAGCGTGT+TGG 0.616731 4_3:-54900350 Msa0648440:CDS
TGGGCCTTGAAGTCCATCAA+GGG 0.617779 4_3:+54900769 None:intergenic
GTATGAGGACAAGACTGAGT+GGG 0.618939 4_3:-54900363 Msa0648440:CDS
AAACCTTCTAAACAGACAGC+CGG 0.619310 4_3:+54900733 None:intergenic
TTTGAGTAAACCTTGAAGCA+CGG 0.620499 4_3:+54899833 None:intergenic
GTGGCTATCAATCCACCAGC+CGG 0.620559 4_3:-54899465 Msa0648440:CDS
GAATTGAGCTGGAAGAATGG+TGG 0.621397 4_3:-54899905 Msa0648440:CDS
TGGCAATGCAATATGGCCAA+AGG 0.629077 4_3:-54902984 Msa0648440:CDS
GTTACGGTTGGATGTAAGGG+AGG 0.629747 4_3:+54903634 None:intergenic
CCTTATTGACTCAATTCCAG+TGG 0.630704 4_3:-54900519 Msa0648440:CDS
GCAAACATGATATCGAGCCT+AGG 0.632131 4_3:-54901910 Msa0648440:CDS
TGATTAGCATATCTATCAGA+GGG 0.632288 4_3:+54900824 None:intergenic
GTACCTGAATTATGCCAGCA+TGG 0.632566 4_3:+54901570 None:intergenic
GGAAGATCAGACTTTCCTGT+AGG 0.633422 4_3:+54902136 None:intergenic
AGTGCACTTACCACCCACTC+CGG 0.636922 4_3:-54903518 Msa0648440:CDS
TGATTTCGGCTTCATATCCG+AGG 0.637153 4_3:+54903714 None:intergenic
GAGGGAATTGGACATAGCAG+AGG 0.637180 4_3:+54900867 None:intergenic
GAAAAGCATCTGACCTGCGA+CGG 0.637406 4_3:+54901750 None:intergenic
ACTTCACCTGAGCACTCAAG+GGG 0.638545 4_3:-54901596 Msa0648440:CDS
AGTGAAACCTGATTTCGTGA+AGG 0.639967 4_3:-54901840 Msa0648440:CDS
ACCGCCAATTGTAATCATGA+TGG 0.640166 4_3:-54899700 Msa0648440:CDS
TGACCTGCGACGGATAGAGT+CGG 0.641736 4_3:+54901760 None:intergenic
CAACACCTCAGAAGAGAACA+GGG 0.642386 4_3:-54900621 Msa0648440:CDS
GAGACTTTGATCACAATCGA+TGG 0.649293 4_3:-54903036 Msa0648440:CDS
ATATATAGTGATCACAGTCG+AGG 0.658364 4_3:+54900948 None:intergenic
GGTTGGTTATCCGGAGTGGG+TGG 0.659629 4_3:+54903508 None:intergenic
AACTTGATAGGAATAGCTGT+CGG 0.663058 4_3:-54899675 Msa0648440:CDS
GAAGTGGCTGTGAATAATGG+AGG 0.663961 4_3:-54903157 Msa0648440:CDS
GATTGATGGGAGCAGTTCCG+CGG 0.664180 4_3:+54900228 None:intergenic
ACAGCAGGATGATCAGCAAG+TGG 0.664216 4_3:+54900479 None:intergenic
GATCTGTAGAACGATTTACT+GGG 0.665434 4_3:+54902203 None:intergenic
GATGCATCAAGCAGCTCACG+AGG 0.667606 4_3:+54900422 None:intergenic
ATGGTGTTTGCTGTGACAAG+TGG 0.672708 4_3:+54902067 None:intergenic
ACCGTTGGACATGACAGCCG+AGG 0.677629 4_3:+54900985 None:intergenic
CATCATATCACTCCTCTGGG+TGG 0.679038 4_3:-54899484 Msa0648440:CDS
ATCTTATAATCACACTCACA+GGG 0.682477 4_3:+54903268 None:intergenic
GATCTATGGATCAGTTACTG+AGG 0.682987 4_3:-54900324 Msa0648440:CDS
GATGGTTGTTTGAAACAAAG+GGG 0.686620 4_3:-54903018 Msa0648440:CDS
GTGTCACAGTAATAGCCAAG+AGG 0.689192 4_3:+54899964 None:intergenic
GGGAAGACGGATATCAACAT+CGG 0.693709 4_3:+54901090 None:intergenic
GCCGGTACAGACCAGATAGG+CGG 0.695938 4_3:-54899447 Msa0648440:CDS
ATGTGCTTTATGATGGATCG+TGG 0.700304 4_3:-54900899 Msa0648440:CDS
CAGTGGAGCCGTTTACTAGG+CGG 0.700615 4_3:-54899621 Msa0648440:CDS
AAACATCAGAGACAAAATAG+GGG 0.704908 4_3:-54901701 Msa0648440:CDS
TATGAGGACAAGACTGAGTG+GGG 0.705596 4_3:-54900362 Msa0648440:CDS
GCTGCTTGATGCATCAACTG+TGG 0.710663 4_3:-54900414 Msa0648440:CDS
AACAACTACAGAAAGATGCG+CGG 0.723770 4_3:+54900672 None:intergenic
TGCTTTATGATGGATCGTGG+TGG 0.732320 4_3:-54900896 Msa0648440:CDS
GGTATGAGGACAAGACTGAG+TGG 0.734815 4_3:-54900364 Msa0648440:CDS
AATTGATGAGCCGACCATGG+AGG 0.735033 4_3:-54902913 Msa0648440:CDS
AAGTGGCTGTGAATAATGGA+GGG 0.736494 4_3:-54903156 Msa0648440:CDS
GTGGATTGATAGCCACCCAG+AGG 0.737395 4_3:+54899472 None:intergenic
GGTATAGTGAGAGCACCAGG+AGG 0.763552 4_3:+54900443 None:intergenic
CCTAGTAAACGGCTCCACTG+TGG 0.766308 4_3:+54899624 None:intergenic
TATACAGTACCATACCACAG+TGG 0.814916 4_3:-54899638 Msa0648440:CDS
AAGGTGATGAGTGATGAACG+TGG 0.906383 4_3:-54903304 Msa0648440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTCTTATTTTGAATAA+TGG - chr4_3:54900189-54900208 Msa0648440:CDS 10.0%
!! AGTAAATAATAAATATTTCT+TGG + chr4_3:54904991-54905010 None:intergenic 10.0%
!!! AAAAAAAGTTGATTTTTTTG+TGG - chr4_3:54899675-54899694 Msa0648440:CDS 15.0%
!!! AAAAAAGTTGATTTTTTTGT+GGG - chr4_3:54899676-54899695 Msa0648440:CDS 15.0%
!! TATTGAAAATAATAGAAGAA+TGG - chr4_3:54901583-54901602 Msa0648440:CDS 15.0%
!! TTTAAAAAAAAAAGCTAAGT+TGG - chr4_3:54902989-54903008 Msa0648440:CDS 15.0%
!! AAAAAAAAATTAAACTCCAA+AGG + chr4_3:54904843-54904862 None:intergenic 15.0%
!!! TTGTGATAATGATTTATGAA+AGG + chr4_3:54899455-54899474 None:intergenic 20.0%
!! TAAAGCATGATTAAGAAAAA+GGG + chr4_3:54899523-54899542 None:intergenic 20.0%
!! ATAAAGCATGATTAAGAAAA+AGG + chr4_3:54899524-54899543 None:intergenic 20.0%
!!! TTAATCATGCTTTATTTTAG+TGG - chr4_3:54899529-54899548 Msa0648440:CDS 20.0%
!!! TAATCATGCTTTATTTTAGT+GGG - chr4_3:54899530-54899549 Msa0648440:CDS 20.0%
!!! AAAAAGTTGATTTTTTTGTG+GGG - chr4_3:54899677-54899696 Msa0648440:CDS 20.0%
!! AGAAAAAACAATGAAACTAT+AGG + chr4_3:54900036-54900055 None:intergenic 20.0%
!!! AATTGTAAACTTCTGAAATT+CGG + chr4_3:54900224-54900243 None:intergenic 20.0%
!! TAAGAGAGAGAAATATTTAA+AGG + chr4_3:54900291-54900310 None:intergenic 20.0%
!!! CTCTTATTATAATACTTTTG+AGG - chr4_3:54900305-54900324 Msa0648440:CDS 20.0%
!!! AAAAAGCATCTAATAAAAAG+AGG + chr4_3:54901379-54901398 None:intergenic 20.0%
!!! TCCATTTTTATGTTTCATTT+TGG - chr4_3:54901440-54901459 Msa0648440:intron 20.0%
!! ATAATAGATTGCATTCAAAT+TGG + chr4_3:54901481-54901500 None:intergenic 20.0%
!!! CTGAAACTTTAAAAAAATGA+TGG - chr4_3:54901503-54901522 Msa0648440:intron 20.0%
!! AATAATAGAAGAATGGAAAT+TGG - chr4_3:54901590-54901609 Msa0648440:CDS 20.0%
!! TCTGGAAGAAAATAATATAT+CGG + chr4_3:54902837-54902856 None:intergenic 20.0%
!!! AGATTATTACAATTTTCCTT+TGG - chr4_3:54904824-54904843 Msa0648440:five_prime_UTR 20.0%
!!! AAAGAGTGTTATATAAGAAG+TGG + chr4_3:54899318-54899337 None:intergenic 25.0%
! AAAGCATGATTAAGAAAAAG+GGG + chr4_3:54899522-54899541 None:intergenic 25.0%
!!! AATCATGCTTTATTTTAGTG+GGG - chr4_3:54899531-54899550 Msa0648440:CDS 25.0%
!! TTATGAACTTTTTGTGATAG+TGG - chr4_3:54899593-54899612 Msa0648440:CDS 25.0%
! AATATAACCAGTTAGTGATT+TGG + chr4_3:54900175-54900194 None:intergenic 25.0%
!!! TTAGATTCACTTTTGAACTT+TGG - chr4_3:54900343-54900362 Msa0648440:CDS 25.0%
!! GTGTTAAATTTTTGAATTGC+AGG - chr4_3:54900446-54900465 Msa0648440:CDS 25.0%
! GAATTGCAGGATATTAATTT+AGG - chr4_3:54900459-54900478 Msa0648440:CDS 25.0%
! TATATAGATGCAGTGAAAAT+AGG - chr4_3:54900976-54900995 Msa0648440:CDS 25.0%
! GCCAAAATGAAACATAAAAA+TGG + chr4_3:54901444-54901463 None:intergenic 25.0%
! TAAAACAAGCTGATATAGTA+TGG + chr4_3:54901726-54901745 None:intergenic 25.0%
!! TGTCTATAGTTTGTGAATTA+TGG - chr4_3:54901941-54901960 Msa0648440:CDS 25.0%
! CATAAATAGATGTGAGAAAA+TGG + chr4_3:54902766-54902785 None:intergenic 25.0%
! TTTATGTCCAATTCTATTGA+AGG - chr4_3:54902780-54902799 Msa0648440:intron 25.0%
! TTATGTCCAATTCTATTGAA+GGG - chr4_3:54902781-54902800 Msa0648440:intron 25.0%
! ATTCATCAGATATTCATTCT+AGG + chr4_3:54903016-54903035 None:intergenic 25.0%
! TCTAGAAACATAAACAAGAA+GGG + chr4_3:54903142-54903161 None:intergenic 25.0%
!! CTCTAAAAACAATGCAATTA+TGG - chr4_3:54904061-54904080 Msa0648440:intron 25.0%
! TCTGAAGAAATTTCATTCTT+CGG + chr4_3:54904091-54904110 None:intergenic 25.0%
! ATGGATAAATTCCAACATTA+AGG + chr4_3:54904124-54904143 None:intergenic 25.0%
! ATAAGAAAAAACGAAGTGAA+TGG + chr4_3:54904143-54904162 None:intergenic 25.0%
!!! TATTCCAGAAAGTTGTTTTT+AGG - chr4_3:54904935-54904954 Msa0648440:five_prime_UTR 25.0%
! TAGGAATGAAAAATGTTTGA+TGG - chr4_3:54904954-54904973 Msa0648440:five_prime_UTR 25.0%
TTGAGATCTATGTGTGAAAA+GGG + chr4_3:54899417-54899436 None:intergenic 30.0%
! TTTGAGATCTATGTGTGAAA+AGG + chr4_3:54899418-54899437 None:intergenic 30.0%
!!! TTTTTTCTCACCGTGATTAT+CGG + chr4_3:54899660-54899679 None:intergenic 30.0%
! TCTTCATTCTGTTTTCTTCT+TGG - chr4_3:54899779-54899798 Msa0648440:CDS 30.0%
CAACTAGAAAAACTCAAAGT+AGG + chr4_3:54899860-54899879 None:intergenic 30.0%
! AGAATCGAAATAAGCTGTTT+TGG - chr4_3:54899908-54899927 Msa0648440:CDS 30.0%
! AATCTGTGTTGTTCAAATTG+AGG - chr4_3:54899961-54899980 Msa0648440:CDS 30.0%
CAAAAAAAATTGCATCAGCT+TGG + chr4_3:54900071-54900090 None:intergenic 30.0%
TCTGTGTTAAAAAGATGTTG+AGG - chr4_3:54900144-54900163 Msa0648440:CDS 30.0%
! TGATGTGTGTTTGTATGTTT+TGG - chr4_3:54900258-54900277 Msa0648440:CDS 30.0%
CTGCTCATTTGTAATGATTT+CGG + chr4_3:54900511-54900530 None:intergenic 30.0%
ATCTTATAATCACACTCACA+GGG + chr4_3:54900943-54900962 None:intergenic 30.0%
TATCTTATAATCACACTCAC+AGG + chr4_3:54900944-54900963 None:intergenic 30.0%
TCAAGTTCTGTGTTCTTATA+TGG + chr4_3:54901030-54901049 None:intergenic 30.0%
ATAGAAGAATGGAAATTGGA+TGG - chr4_3:54901594-54901613 Msa0648440:CDS 30.0%
! GAAATTGGATGGAAGTTTTA+GGG - chr4_3:54901605-54901624 Msa0648440:CDS 30.0%
!! TCTCATCATTTTTATCCGTT+TGG - chr4_3:54901849-54901868 Msa0648440:CDS 30.0%
!! AATTATGGTTTGCTTTCTCT+TGG - chr4_3:54901956-54901975 Msa0648440:CDS 30.0%
TACAGATCTTAATGTTCTGA+AGG - chr4_3:54902020-54902039 Msa0648440:CDS 30.0%
!!! ACTTTTAACTTTTGAGGCAA+TGG - chr4_3:54902233-54902252 Msa0648440:CDS 30.0%
TTTAAGCTGAAGTATGATTC+AGG + chr4_3:54902327-54902346 None:intergenic 30.0%
!!! GGTTTCACTTTGTTTTTGTA+AGG + chr4_3:54902357-54902376 None:intergenic 30.0%
! ATTTTGTCTCTGATGTTTCA+TGG + chr4_3:54902505-54902524 None:intergenic 30.0%
TGAAACATCAGAGACAAAAT+AGG - chr4_3:54902505-54902524 Msa0648440:intron 30.0%
GAAACATCAGAGACAAAATA+GGG - chr4_3:54902506-54902525 Msa0648440:intron 30.0%
AAACATCAGAGACAAAATAG+GGG - chr4_3:54902507-54902526 Msa0648440:intron 30.0%
!!! GTTGCTTTTTGAACCTTTAT+AGG + chr4_3:54902549-54902568 None:intergenic 30.0%
TAAAGGTTCAAAAAGCAACA+TGG - chr4_3:54902550-54902569 Msa0648440:intron 30.0%
AAATAGATGTGAGAAAATGG+AGG + chr4_3:54902763-54902782 None:intergenic 30.0%
ATTAAACCAGATAACAAGTC+TGG + chr4_3:54902855-54902874 None:intergenic 30.0%
TCCATTGAATCTGTTAAATG+CGG - chr4_3:54902874-54902893 Msa0648440:CDS 30.0%
ATATAAAAACGTTGATGTCG+CGG - chr4_3:54902936-54902955 Msa0648440:CDS 30.0%
! TCTGATGAATGATATTTTGC+AGG - chr4_3:54903026-54903045 Msa0648440:CDS 30.0%
CTAGAAACATAAACAAGAAG+GGG + chr4_3:54903141-54903160 None:intergenic 30.0%
! CTCTAGAAACATAAACAAGA+AGG + chr4_3:54903143-54903162 None:intergenic 30.0%
TATATAACTCCAAAGCAATG+AGG - chr4_3:54903280-54903299 Msa0648440:CDS 30.0%
ATATAACTCCAAAGCAATGA+GGG - chr4_3:54903281-54903300 Msa0648440:CDS 30.0%
TGATTAGCATATCTATCAGA+GGG + chr4_3:54903387-54903406 None:intergenic 30.0%
CATGTTAACATCAAAGAAGA+CGG + chr4_3:54903415-54903434 None:intergenic 30.0%
! TTTAGAAGGTTTGCTCTTTA+TGG - chr4_3:54903486-54903505 Msa0648440:CDS 30.0%
TCACAATTCTCGAAGAAATT+TGG - chr4_3:54903654-54903673 Msa0648440:CDS 30.0%
CACAATTCTCGAAGAAATTT+GGG - chr4_3:54903655-54903674 Msa0648440:CDS 30.0%
CTGAAGAAATTTCATTCTTC+GGG + chr4_3:54904090-54904109 None:intergenic 30.0%
GAAGAATGAAATTTCTTCAG+AGG - chr4_3:54904090-54904109 Msa0648440:intron 30.0%
CTGATCTGTATATTGTCAAA+TGG - chr4_3:54904471-54904490 Msa0648440:intron 30.0%
TTCACCATCATGATTACAAT+TGG + chr4_3:54904515-54904534 None:intergenic 30.0%
AAAGAATGAGCTATCATCAT+GGG + chr4_3:54904799-54904818 None:intergenic 30.0%
AAAAGAATGAGCTATCATCA+TGG + chr4_3:54904800-54904819 None:intergenic 30.0%
CATTCCTAAAAACAACTTTC+TGG + chr4_3:54904942-54904961 None:intergenic 30.0%
ATATAAGAAGTGGTCTGGTT+TGG + chr4_3:54899308-54899327 None:intergenic 35.0%
GTGTTATATAAGAAGTGGTC+TGG + chr4_3:54899313-54899332 None:intergenic 35.0%
ATTACTTCCTTGCACATGAT+TGG - chr4_3:54899619-54899638 Msa0648440:CDS 35.0%
TGAATAGTTGCCGATAATCA+CGG - chr4_3:54899647-54899666 Msa0648440:CDS 35.0%
AGCAATGTAGTGAAGTCAAA+AGG - chr4_3:54899713-54899732 Msa0648440:CDS 35.0%
GCAATGTAGTGAAGTCAAAA+GGG - chr4_3:54899714-54899733 Msa0648440:CDS 35.0%
CAATGTAGTGAAGTCAAAAG+GGG - chr4_3:54899715-54899734 Msa0648440:CDS 35.0%
AATCCTTCATAGATGACTCT+TGG + chr4_3:54899811-54899830 None:intergenic 35.0%
TATGTAAGTGTTTGTTCCTG+AGG - chr4_3:54900383-54900402 Msa0648440:CDS 35.0%
TTAGGATCAATCTTTGACCT+CGG - chr4_3:54900477-54900496 Msa0648440:CDS 35.0%
AATGTTACGGTTGGATGTAA+GGG + chr4_3:54900580-54900599 None:intergenic 35.0%
AAATGTTACGGTTGGATGTA+AGG + chr4_3:54900581-54900600 None:intergenic 35.0%
TTACATCCAACCGTAACATT+TGG - chr4_3:54900580-54900599 Msa0648440:CDS 35.0%
!! GTTTCAAGTTCTCTATTCAC+TGG - chr4_3:54900763-54900782 Msa0648440:CDS 35.0%
TTTATCCATTAGATGTGCAC+GGG + chr4_3:54900806-54900825 None:intergenic 35.0%
CTTTATCCATTAGATGTGCA+CGG + chr4_3:54900807-54900826 None:intergenic 35.0%
TGAAGTAAATCATCCACAGA+TGG - chr4_3:54900837-54900856 Msa0648440:CDS 35.0%
ATGCAGTGAAAATAGGAGAT+GGG - chr4_3:54900983-54901002 Msa0648440:CDS 35.0%
!! AGACTTTGTCGATTTCATCA+AGG + chr4_3:54901130-54901149 None:intergenic 35.0%
! TCGATGGTTGTTTGAAACAA+AGG - chr4_3:54901188-54901207 Msa0648440:intron 35.0%
! CGATGGTTGTTTGAAACAAA+GGG - chr4_3:54901189-54901208 Msa0648440:intron 35.0%
! GATGGTTGTTTGAAACAAAG+GGG - chr4_3:54901190-54901209 Msa0648440:intron 35.0%
! TTTGAAACAAAGGGGACATA+TGG - chr4_3:54901198-54901217 Msa0648440:intron 35.0%
ATGGTTATGGCAATGCAATA+TGG - chr4_3:54901217-54901236 Msa0648440:intron 35.0%
GATTTCGGAAATGGAAAAGA+TGG - chr4_3:54901252-54901271 Msa0648440:intron 35.0%
ATCTTCAACTTCCTTGTTAG+TGG + chr4_3:54901321-54901340 None:intergenic 35.0%
! GGAAATTGGATGGAAGTTTT+AGG - chr4_3:54901604-54901623 Msa0648440:CDS 35.0%
!! ATGATTTTGGAGAAGCAATC+TGG - chr4_3:54901637-54901656 Msa0648440:CDS 35.0%
TAATTGTCAGAACACACATG+CGG + chr4_3:54901811-54901830 None:intergenic 35.0%
TGAGACTGTAACAGAAAGAA+AGG + chr4_3:54901834-54901853 None:intergenic 35.0%
GAGGGTCACACATAAAAATA+CGG - chr4_3:54901897-54901916 Msa0648440:CDS 35.0%
ATAAAAATACGGATGCAGTC+TGG - chr4_3:54901908-54901927 Msa0648440:CDS 35.0%
GATCTGTAGAACGATTTACT+GGG + chr4_3:54902008-54902027 None:intergenic 35.0%
AGATCTGTAGAACGATTTAC+TGG + chr4_3:54902009-54902028 None:intergenic 35.0%
GAAACAAAGATATCTATGCC+TGG + chr4_3:54902096-54902115 None:intergenic 35.0%
! TCTTGCTATGTTTCTGATGA+TGG - chr4_3:54902204-54902223 Msa0648440:CDS 35.0%
!!! AGGTGCACTTTTAACTTTTG+AGG - chr4_3:54902227-54902246 Msa0648440:CDS 35.0%
!! TGCTAGCTTTGCTAATAACT+GGG - chr4_3:54902263-54902282 Msa0648440:CDS 35.0%
AAGTATGATTCAGGATTCCT+AGG + chr4_3:54902318-54902337 None:intergenic 35.0%
TCTCTTCCCTTCAATAGAAT+TGG + chr4_3:54902790-54902809 None:intergenic 35.0%
!! TTTCTTCCAGACTTGTTATC+TGG - chr4_3:54902846-54902865 Msa0648440:intron 35.0%
AAAGTCTGCAATCACAATCT+GGG + chr4_3:54902962-54902981 None:intergenic 35.0%
AAAAGTCTGCAATCACAATC+TGG + chr4_3:54902963-54902982 None:intergenic 35.0%
TCATCAGCATTTCCAATAAG+AGG + chr4_3:54903078-54903097 None:intergenic 35.0%
!! TTTTTGTTGTGATCGTAACC+TGG + chr4_3:54903174-54903193 None:intergenic 35.0%
TACGATCACAACAAAAAAGC+TGG - chr4_3:54903177-54903196 Msa0648440:CDS 35.0%
ACGATCACAACAAAAAAGCT+GGG - chr4_3:54903178-54903197 Msa0648440:CDS 35.0%
GTTAAGTATAAAAGGACCGT+TGG + chr4_3:54903241-54903260 None:intergenic 35.0%
CAGTCGAGGTTAAGTATAAA+AGG + chr4_3:54903249-54903268 None:intergenic 35.0%
ATATATAGTGATCACAGTCG+AGG + chr4_3:54903263-54903282 None:intergenic 35.0%
GTGATTAGCATATCTATCAG+AGG + chr4_3:54903388-54903407 None:intergenic 35.0%
! TCTTTCTGTAGTTGTTGCTT+TGG - chr4_3:54903543-54903562 Msa0648440:CDS 35.0%
!! CTTTCTGTAGTTGTTGCTTT+GGG - chr4_3:54903544-54903563 Msa0648440:CDS 35.0%
TGTGATTTCATGTTGGTATG+AGG - chr4_3:54903830-54903849 Msa0648440:intron 35.0%
GGTTATAGGATGCATAATAG+AGG - chr4_3:54903918-54903937 Msa0648440:intron 35.0%
ATAGGATGCATAATAGAGGA+TGG - chr4_3:54903922-54903941 Msa0648440:intron 35.0%
AACCTATCAGTGAGATTGAT+GGG + chr4_3:54903996-54904015 None:intergenic 35.0%
AAGAAATTTCATTCTTCGGG+TGG + chr4_3:54904087-54904106 None:intergenic 35.0%
AGGATAGCATACCTTAATGT+TGG - chr4_3:54904110-54904129 Msa0648440:intron 35.0%
AAAAAGTGACATCGAGTGTT+TGG + chr4_3:54904217-54904236 None:intergenic 35.0%
!!! AACACTCGATGTCACTTTTT+TGG - chr4_3:54904217-54904236 Msa0648440:intron 35.0%
TTGCTGTGCTTGAAATTAAG+TGG - chr4_3:54904276-54904295 Msa0648440:intron 35.0%
!!! AATGAGCAGTTTTGGTTGAT+TGG - chr4_3:54904329-54904348 Msa0648440:intron 35.0%
TTTGAGTAAACCTTGAAGCA+CGG + chr4_3:54904378-54904397 None:intergenic 35.0%
TTCACCTTGACTTCAAAATC+TGG - chr4_3:54904422-54904441 Msa0648440:intron 35.0%
TACAATTGGCGGTATCATAA+GGG + chr4_3:54904501-54904520 None:intergenic 35.0%
TTACAATTGGCGGTATCATA+AGG + chr4_3:54904502-54904521 None:intergenic 35.0%
ACCATCATGATTACAATTGG+CGG + chr4_3:54904512-54904531 None:intergenic 35.0%
! ATCATGATGGTGAACTTGAT+AGG - chr4_3:54904521-54904540 Msa0648440:intron 35.0%
AACTTGATAGGAATAGCTGT+CGG - chr4_3:54904533-54904552 Msa0648440:intron 35.0%
! CATCTCTATCCTTTTGCAAA+AGG - chr4_3:54904638-54904657 Msa0648440:intron 35.0%
! TCCTTTTGCAAAAGGTTTGA+TGG - chr4_3:54904646-54904665 Msa0648440:intron 35.0%
! CCTTTTGCAAAAGGTTTGAT+GGG - chr4_3:54904647-54904666 Msa0648440:intron 35.0%
GACCATACAAAAACAATGGT+GGG + chr4_3:54904689-54904708 None:intergenic 35.0%
!!! CACCATTGTTTTTGTATGGT+CGG - chr4_3:54904688-54904707 Msa0648440:intron 35.0%
!!! ACCATTGTTTTTGTATGGTC+GGG - chr4_3:54904689-54904708 Msa0648440:intron 35.0%
AATCATCATATCACTCCTCT+GGG - chr4_3:54904721-54904740 Msa0648440:intron 35.0%
ACTGAGTTGTTGAGTCAAAA+GGG + chr4_3:54904869-54904888 None:intergenic 35.0%
GACAGAGAACGAGTAATCTT+CGG + chr4_3:54899225-54899244 None:intergenic 40.0%
CAATCAACCAATCATGTGCA+AGG + chr4_3:54899629-54899648 None:intergenic 40.0%
TGACCAAGAGTCATCTATGA+AGG - chr4_3:54899805-54899824 Msa0648440:CDS 40.0%
GGAATCTCCAAATCACTAAC+TGG - chr4_3:54900165-54900184 Msa0648440:CDS 40.0%
TAAGTGTTTGTTCCTGAGGT+GGG - chr4_3:54900387-54900406 Msa0648440:CDS 40.0%
AGTTCTTCGGCCAAATGTTA+CGG + chr4_3:54900593-54900612 None:intergenic 40.0%
!! GTATCCATAGGTTGGTTATC+CGG + chr4_3:54900712-54900731 None:intergenic 40.0%
! AGATTGAGGTATCCATAGGT+TGG + chr4_3:54900720-54900739 None:intergenic 40.0%
TCAAGTTCTCTATTCACTGG+AGG - chr4_3:54900766-54900785 Msa0648440:CDS 40.0%
TATTACCCGTGCACATCTAA+TGG - chr4_3:54900798-54900817 Msa0648440:CDS 40.0%
TATTCCTGGCTGTGATTCTA+AGG - chr4_3:54900885-54900904 Msa0648440:CDS 40.0%
GATGCAGTGAAAATAGGAGA+TGG - chr4_3:54900982-54901001 Msa0648440:CDS 40.0%
TATATGGCTCTTTGCATCCT+GGG + chr4_3:54901014-54901033 None:intergenic 40.0%
TTATATGGCTCTTTGCATCC+TGG + chr4_3:54901015-54901034 None:intergenic 40.0%
GAACACAGAACTTGATGAAG+TGG - chr4_3:54901035-54901054 Msa0648440:CDS 40.0%
GATGAAGTGGCTGTGAATAA+TGG - chr4_3:54901048-54901067 Msa0648440:CDS 40.0%
! AAGTGGCTGTGAATAATGGA+GGG - chr4_3:54901052-54901071 Msa0648440:CDS 40.0%
GAGACTTTGATCACAATCGA+TGG - chr4_3:54901172-54901191 Msa0648440:intron 40.0%
ACAAAGGGGACATATGGTTA+TGG - chr4_3:54901204-54901223 Msa0648440:intron 40.0%
AATGCAATATGGCCAAAGGA+AGG - chr4_3:54901228-54901247 Msa0648440:intron 40.0%
ATGCAATATGGCCAAAGGAA+GGG - chr4_3:54901229-54901248 Msa0648440:intron 40.0%
! AGGGCTGATTGAGATGATTT+TGG - chr4_3:54901624-54901643 Msa0648440:CDS 40.0%
ACAACACAAGAGCAACCAAA+CGG + chr4_3:54901867-54901886 None:intergenic 40.0%
GACTTTCCTGTAGGATTGTT+AGG + chr4_3:54902066-54902085 None:intergenic 40.0%
AGCAGCTAAAATCGACAAGA+TGG + chr4_3:54902163-54902182 None:intergenic 40.0%
TAGCAAGAAAGCTTCTCAAC+TGG + chr4_3:54902192-54902211 None:intergenic 40.0%
!! TGCTATGTTTCTGATGATGG+AGG - chr4_3:54902207-54902226 Msa0648440:CDS 40.0%
!! CTGCTAGCTTTGCTAATAAC+TGG - chr4_3:54902262-54902281 Msa0648440:CDS 40.0%
ATATCATGTTTGCGGCAGAA+TGG + chr4_3:54902291-54902310 None:intergenic 40.0%
TAGGCTCGATATCATGTTTG+CGG + chr4_3:54902299-54902318 None:intergenic 40.0%
AGTGAAACCTGATTTCGTGA+AGG - chr4_3:54902368-54902387 Msa0648440:intron 40.0%
ATTTCGTGAAGGATCGTAGA+AGG - chr4_3:54902379-54902398 Msa0648440:intron 40.0%
GAGTTCAAGGTCAGAATCAA+TGG - chr4_3:54902420-54902439 Msa0648440:intron 40.0%
TGAACCTGTTGAGCCTATAA+AGG - chr4_3:54902533-54902552 Msa0648440:intron 40.0%
TGAACCTTTATAGGCTCAAC+AGG + chr4_3:54902540-54902559 None:intergenic 40.0%
GGTTCAAAAAGCAACATGGA+TGG - chr4_3:54902554-54902573 Msa0648440:intron 40.0%
GCCGCATTTAACAGATTCAA+TGG + chr4_3:54902878-54902897 None:intergenic 40.0%
CATAAACAAGAAGGGGAAGA+CGG + chr4_3:54903134-54903153 None:intergenic 40.0%
CGATCACAACAAAAAAGCTG+GGG - chr4_3:54903179-54903198 Msa0648440:CDS 40.0%
! GGAAGGTATGTGCTTTATGA+TGG - chr4_3:54903302-54903321 Msa0648440:CDS 40.0%
!! ATGTGCTTTATGATGGATCG+TGG - chr4_3:54903309-54903328 Msa0648440:CDS 40.0%
CAATTCCCTCAAAGGTTTGA+GGG - chr4_3:54903354-54903373 Msa0648440:CDS 40.0%
CAATACCCTCAAACCTTTGA+GGG + chr4_3:54903362-54903381 None:intergenic 40.0%
TCAATACCCTCAAACCTTTG+AGG + chr4_3:54903363-54903382 None:intergenic 40.0%
AAACCTTCTAAACAGACAGC+CGG + chr4_3:54903478-54903497 None:intergenic 40.0%
AACAACTACAGAAAGATGCG+CGG + chr4_3:54903539-54903558 None:intergenic 40.0%
CCACTGGAATTGAGTCAATA+AGG + chr4_3:54903692-54903711 None:intergenic 40.0%
!! CCTTATTGACTCAATTCCAG+TGG - chr4_3:54903689-54903708 Msa0648440:CDS 40.0%
GATCATCCTGCTGTGAAAAA+TGG - chr4_3:54903738-54903757 Msa0648440:five_prime_UTR 40.0%
CCAACATGAAATCACACTGA+TGG + chr4_3:54903826-54903845 None:intergenic 40.0%
CCATCAGTGTGATTTCATGT+TGG - chr4_3:54903823-54903842 Msa0648440:intron 40.0%
GATCTATGGATCAGTTACTG+AGG - chr4_3:54903884-54903903 Msa0648440:intron 40.0%
CAACCTATCAGTGAGATTGA+TGG + chr4_3:54903997-54904016 None:intergenic 40.0%
GTTGCATCAGGTTCTTAGAT+GGG - chr4_3:54904013-54904032 Msa0648440:intron 40.0%
!!! CACTTTTTTGGCTTACCTCT+TGG - chr4_3:54904229-54904248 Msa0648440:intron 40.0%
GTGCTTGAAATTAAGTGGTC+AGG - chr4_3:54904281-54904300 Msa0648440:intron 40.0%
!!! AGCAGTTTTGGTTGATTGGA+GGG - chr4_3:54904333-54904352 Msa0648440:intron 40.0%
ACCTTGACTTCAAAATCTGG+CGG - chr4_3:54904425-54904444 Msa0648440:intron 40.0%
ACCGCCAATTGTAATCATGA+TGG - chr4_3:54904508-54904527 Msa0648440:intron 40.0%
CTGTGGTATGGTACTGTATA+TGG + chr4_3:54904570-54904589 None:intergenic 40.0%
TATACAGTACCATACCACAG+TGG - chr4_3:54904570-54904589 Msa0648440:intron 40.0%
AGAAAACACCGCCTAGTAAA+CGG + chr4_3:54904598-54904617 None:intergenic 40.0%
! CGGTGTTTTCTTCAGCTTTT+GGG - chr4_3:54904607-54904626 Msa0648440:intron 40.0%
!! TTTCTTCAGCTTTTGGGTCT+TGG - chr4_3:54904613-54904632 Msa0648440:intron 40.0%
! CCCATCAAACCTTTTGCAAA+AGG + chr4_3:54904650-54904669 None:intergenic 40.0%
AAAGGTTTGATGGGAAGAAG+AGG - chr4_3:54904656-54904675 Msa0648440:intron 40.0%
AAGGTTTGATGGGAAGAAGA+GGG - chr4_3:54904657-54904676 Msa0648440:intron 40.0%
!!! CACCCACCATTGTTTTTGTA+TGG - chr4_3:54904684-54904703 Msa0648440:intron 40.0%
CGACCATACAAAAACAATGG+TGG + chr4_3:54904690-54904709 None:intergenic 40.0%
ACCCGACCATACAAAAACAA+TGG + chr4_3:54904693-54904712 None:intergenic 40.0%
CAATCATCATATCACTCCTC+TGG - chr4_3:54904720-54904739 Msa0648440:intron 40.0%
TGAGCTATCATCATGGGAAT+TGG + chr4_3:54904793-54904812 None:intergenic 40.0%
CACTGAGTTGTTGAGTCAAA+AGG + chr4_3:54904870-54904889 None:intergenic 40.0%
TCTTTCAGCGTGTCTTGCAA+AGG - chr4_3:54899247-54899266 Msa0648440:three_prime_UTR 45.0%
TGTCTTGCAAAGGTGACAGT+TGG - chr4_3:54899257-54899276 Msa0648440:three_prime_UTR 45.0%
GTAAGTGTTTGTTCCTGAGG+TGG - chr4_3:54900386-54900405 Msa0648440:CDS 45.0%
AAGTGTTTGTTCCTGAGGTG+GGG - chr4_3:54900388-54900407 Msa0648440:CDS 45.0%
TTAACTTTATGCCCCACCTC+AGG + chr4_3:54900402-54900421 None:intergenic 45.0%
TGATTTCGGCTTCATATCCG+AGG + chr4_3:54900497-54900516 None:intergenic 45.0%
TTTGGCCGAAGAACTTCATC+CGG - chr4_3:54900598-54900617 Msa0648440:CDS 45.0%
ATCGACCGGATGAAGTTCTT+CGG + chr4_3:54900606-54900625 None:intergenic 45.0%
! GGAGTAACTGATGTATCGAC+CGG + chr4_3:54900620-54900639 None:intergenic 45.0%
CTCGCTATCAAGATCATCTC+TGG + chr4_3:54900641-54900660 None:intergenic 45.0%
!! GATGATCTTGATAGCGAGCT+AGG - chr4_3:54900643-54900662 Msa0648440:CDS 45.0%
!! ATAGGTTGGTTATCCGGAGT+GGG + chr4_3:54900706-54900725 None:intergenic 45.0%
! TGCGAGATTGAGGTATCCAT+AGG + chr4_3:54900724-54900743 None:intergenic 45.0%
CTCAACTTTCTGCGAGATTG+AGG + chr4_3:54900734-54900753 None:intergenic 45.0%
CTCAATCTCGCAGAAAGTTG+AGG - chr4_3:54900732-54900751 Msa0648440:CDS 45.0%
GTAAATCATCCACAGATGGC+TGG - chr4_3:54900841-54900860 Msa0648440:CDS 45.0%
ATCACCTTAGAATCACAGCC+AGG + chr4_3:54900892-54900911 None:intergenic 45.0%
AAGGTGATGAGTGATGAACG+TGG - chr4_3:54900904-54900923 Msa0648440:CDS 45.0%
GAAGTGGCTGTGAATAATGG+AGG - chr4_3:54901051-54901070 Msa0648440:CDS 45.0%
TTCCACTTCCTCCACCAAAT+GGG - chr4_3:54901079-54901098 Msa0648440:CDS 45.0%
! ATTTTAGACCCCCCATTTGG+TGG + chr4_3:54901093-54901112 None:intergenic 45.0%
ACCAAATGGGGGGTCTAAAA+TGG - chr4_3:54901092-54901111 Msa0648440:CDS 45.0%
! TCCATTTTAGACCCCCCATT+TGG + chr4_3:54901096-54901115 None:intergenic 45.0%
TGGCAATGCAATATGGCCAA+AGG - chr4_3:54901224-54901243 Msa0648440:intron 45.0%
TGCAATATGGCCAAAGGAAG+GGG - chr4_3:54901230-54901249 Msa0648440:intron 45.0%
TTTCCGAAATCCCCTTCCTT+TGG + chr4_3:54901243-54901262 None:intergenic 45.0%
AAGGAAGGGGATTTCGGAAA+TGG - chr4_3:54901243-54901262 Msa0648440:intron 45.0%
! AAGAGGCTTCGTACCGATAT+GGG + chr4_3:54901362-54901381 None:intergenic 45.0%
! AAAGAGGCTTCGTACCGATA+TGG + chr4_3:54901363-54901382 None:intergenic 45.0%
ATACGGATGCAGTCTGGTTA+TGG - chr4_3:54901914-54901933 Msa0648440:CDS 45.0%
TACGGATGCAGTCTGGTTAT+GGG - chr4_3:54901915-54901934 Msa0648440:CDS 45.0%
CGATTTACTGGGCATAGCTT+GGG + chr4_3:54901997-54902016 None:intergenic 45.0%
ACGATTTACTGGGCATAGCT+TGG + chr4_3:54901998-54902017 None:intergenic 45.0%
CCTGTAGGATTGTTAGGACT+TGG + chr4_3:54902060-54902079 None:intergenic 45.0%
CCAAGTCCTAACAATCCTAC+AGG - chr4_3:54902057-54902076 Msa0648440:CDS 45.0%
GGAAGATCAGACTTTCCTGT+AGG + chr4_3:54902075-54902094 None:intergenic 45.0%
ACAGGAAAGTCTGATCTTCC+AGG - chr4_3:54902075-54902094 Msa0648440:CDS 45.0%
ACAAGTGGTGGTTCTTTCTC+AGG + chr4_3:54902129-54902148 None:intergenic 45.0%
!! ATGGTGTTTGCTGTGACAAG+TGG + chr4_3:54902144-54902163 None:intergenic 45.0%
ATTAGCAAAGCTAGCAGCCT+CGG + chr4_3:54902259-54902278 None:intergenic 45.0%
GCAAACATGATATCGAGCCT+AGG - chr4_3:54902298-54902317 Msa0648440:CDS 45.0%
CTACGATCCTTCACGAAATC+AGG + chr4_3:54902378-54902397 None:intergenic 45.0%
GCGTGAGTATGATGAGTTCA+AGG - chr4_3:54902407-54902426 Msa0648440:intron 45.0%
! AGATGCTTTTCACGCAAGAG+AGG - chr4_3:54902470-54902489 Msa0648440:intron 45.0%
TCACGCAAGAGAGGAAATCA+AGG - chr4_3:54902479-54902498 Msa0648440:intron 45.0%
AAAGCAACATGGATGGCTGA+TGG - chr4_3:54902561-54902580 Msa0648440:intron 45.0%
TGACCATGCTGGCATAATTC+AGG - chr4_3:54902635-54902654 Msa0648440:intron 45.0%
GTACCTGAATTATGCCAGCA+TGG + chr4_3:54902641-54902660 None:intergenic 45.0%
GGGAAGACGGATATCAACAT+CGG + chr4_3:54903121-54903140 None:intergenic 45.0%
! GTTTCTAGAGAGAAACGTCC+AGG - chr4_3:54903153-54903172 Msa0648440:CDS 45.0%
! GGCTCTAACCAATGCATTCA+TGG + chr4_3:54903205-54903224 None:intergenic 45.0%
!! GAATGCATTGGTTAGAGCCT+CGG - chr4_3:54903206-54903225 Msa0648440:CDS 45.0%
AACTCCAAAGCAATGAGGGA+AGG - chr4_3:54903285-54903304 Msa0648440:CDS 45.0%
CATACCTTCCCTCATTGCTT+TGG + chr4_3:54903292-54903311 None:intergenic 45.0%
!! TGCTTTATGATGGATCGTGG+TGG - chr4_3:54903312-54903331 Msa0648440:CDS 45.0%
GCTATGTCCAATTCCCTCAA+AGG - chr4_3:54903346-54903365 Msa0648440:CDS 45.0%
! CCTCAAACCTTTGAGGGAAT+TGG + chr4_3:54903356-54903375 None:intergenic 45.0%
CCAATTCCCTCAAAGGTTTG+AGG - chr4_3:54903353-54903372 Msa0648440:CDS 45.0%
GTTAACATGAGAGCCCTTGA+TGG - chr4_3:54903426-54903445 Msa0648440:CDS 45.0%
CAACACCTCAGAAGAGAACA+GGG - chr4_3:54903587-54903606 Msa0648440:CDS 45.0%
GTATGAGGACAAGACTGAGT+GGG - chr4_3:54903845-54903864 Msa0648440:intron 45.0%
TATGAGGACAAGACTGAGTG+GGG - chr4_3:54903846-54903865 Msa0648440:intron 45.0%
TGGATCAGTTACTGAGGATG+TGG - chr4_3:54903890-54903909 Msa0648440:intron 45.0%
! AGGATGTGGTCACTGGTTAT+AGG - chr4_3:54903904-54903923 Msa0648440:intron 45.0%
CTCCCATCAATCTCACTGAT+AGG - chr4_3:54903991-54904010 Msa0648440:intron 45.0%
TCTCACTGATAGGTTGCATC+AGG - chr4_3:54904001-54904020 Msa0648440:intron 45.0%
GGTTGCATCAGGTTCTTAGA+TGG - chr4_3:54904012-54904031 Msa0648440:intron 45.0%
GTGTCACAGTAATAGCCAAG+AGG + chr4_3:54904247-54904266 None:intergenic 45.0%
TAAGTGGTCAGGAATTGAGC+TGG - chr4_3:54904292-54904311 Msa0648440:intron 45.0%
CAGGAATTGAGCTGGAAGAA+TGG - chr4_3:54904300-54904319 Msa0648440:intron 45.0%
GAATTGAGCTGGAAGAATGG+TGG - chr4_3:54904303-54904322 Msa0648440:intron 45.0%
! GGTGGAGAAATGAGCAGTTT+TGG - chr4_3:54904321-54904340 Msa0648440:intron 45.0%
!!! GAGCAGTTTTGGTTGATTGG+AGG - chr4_3:54904332-54904351 Msa0648440:intron 45.0%
GGTTTACTCAAAGTCGTTGC+AGG - chr4_3:54904386-54904405 Msa0648440:intron 45.0%
!!! ACCGCCAGATTTTGAAGTCA+AGG + chr4_3:54904429-54904448 None:intergenic 45.0%
! GCGGTGTTTTCTTCAGCTTT+TGG - chr4_3:54904606-54904625 Msa0648440:intron 45.0%
ATTGGAATGAACCGCCTATC+TGG + chr4_3:54904775-54904794 None:intergenic 45.0%
!! AGAAGTGGTCTGGTTTGGTC+TGG + chr4_3:54899303-54899322 None:intergenic 50.0%
GTTACGGTTGGATGTAAGGG+AGG + chr4_3:54900577-54900596 None:intergenic 50.0%
CTTCGGCCAAATGTTACGGT+TGG + chr4_3:54900589-54900608 None:intergenic 50.0%
!! CATAGGTTGGTTATCCGGAG+TGG + chr4_3:54900707-54900726 None:intergenic 50.0%
CACTCCGGATAACCAACCTA+TGG - chr4_3:54900705-54900724 Msa0648440:CDS 50.0%
CACAGATGGCTGGTGCAAAA+GGG - chr4_3:54900851-54900870 Msa0648440:CDS 50.0%
! GGGTCGAAATGTGCTATTCC+TGG - chr4_3:54900871-54900890 Msa0648440:CDS 50.0%
TTTGGTGGAGGAAGTGGAAG+TGG + chr4_3:54901078-54901097 None:intergenic 50.0%
CTTCCACTTCCTCCACCAAA+TGG - chr4_3:54901078-54901097 Msa0648440:CDS 50.0%
TCCACTTCCTCCACCAAATG+GGG - chr4_3:54901080-54901099 Msa0648440:CDS 50.0%
! ATGGGGGGTCTAAAATGGAG+AGG - chr4_3:54901097-54901116 Msa0648440:CDS 50.0%
! GCGCTGATGAGAAGTCAAAC+TGG - chr4_3:54901150-54901169 Msa0648440:CDS 50.0%
TGGCCAAAGGAAGGGGATTT+CGG - chr4_3:54901237-54901256 Msa0648440:intron 50.0%
! GGTCGGCTCATCAATTCAGT+TGG + chr4_3:54901291-54901310 None:intergenic 50.0%
CTGAATTGATGAGCCGACCA+TGG - chr4_3:54901292-54901311 Msa0648440:intron 50.0%
AATTGATGAGCCGACCATGG+AGG - chr4_3:54901295-54901314 Msa0648440:intron 50.0%
TTGTTAGTGGCCTCCATGGT+CGG + chr4_3:54901308-54901327 None:intergenic 50.0%
TTCCTTGTTAGTGGCCTCCA+TGG + chr4_3:54901312-54901331 None:intergenic 50.0%
CTGCTGTTCTCAGCCCATAT+CGG - chr4_3:54901346-54901365 Msa0648440:intron 50.0%
! CTCTTGTGTTGTTCCTGCAC+TGG - chr4_3:54901875-54901894 Msa0648440:CDS 50.0%
! TTGTGTTGTTCCTGCACTGG+AGG - chr4_3:54901878-54901897 Msa0648440:CDS 50.0%
! TGTGTTGTTCCTGCACTGGA+GGG - chr4_3:54901879-54901898 Msa0648440:CDS 50.0%
ACGGATGCAGTCTGGTTATG+GGG - chr4_3:54901916-54901935 Msa0648440:CDS 50.0%
!! GTGTTTGCTGTGACAAGTGG+TGG + chr4_3:54902141-54902160 None:intergenic 50.0%
!!! AACTTTTGAGGCAATGGCCG+AGG - chr4_3:54902239-54902258 Msa0648440:CDS 50.0%
!! GAAAAGCATCTGACCTGCGA+CGG + chr4_3:54902461-54902480 None:intergenic 50.0%
! GGATGGCTGATGGATCTCAT+TGG - chr4_3:54902571-54902590 Msa0648440:intron 50.0%
! CTGATGGATCTCATTGGCCA+GGG - chr4_3:54902577-54902596 Msa0648440:intron 50.0%
! GAAGTGTTCAACCAAGTCCC+TGG + chr4_3:54902597-54902616 None:intergenic 50.0%
ACACTTCACCTGAGCACTCA+AGG - chr4_3:54902610-54902629 Msa0648440:intron 50.0%
CACTTCACCTGAGCACTCAA+GGG - chr4_3:54902611-54902630 Msa0648440:intron 50.0%
ACTTCACCTGAGCACTCAAG+GGG - chr4_3:54902612-54902631 Msa0648440:intron 50.0%
GCGGCTTATGCAATCCATTG+CGG - chr4_3:54902893-54902912 Msa0648440:CDS 50.0%
ATAAGAGGCTCGTCACTTGG+AGG + chr4_3:54903063-54903082 None:intergenic 50.0%
CCAATAAGAGGCTCGTCACT+TGG + chr4_3:54903066-54903085 None:intergenic 50.0%
CCAAGTGACGAGCCTCTTAT+TGG - chr4_3:54903063-54903082 Msa0648440:CDS 50.0%
GACGGATATCAACATCGGTC+AGG + chr4_3:54903116-54903135 None:intergenic 50.0%
GAGGGAATTGGACATAGCAG+AGG + chr4_3:54903344-54903363 None:intergenic 50.0%
!! AGAGCCCTTGATGGACTTCA+AGG - chr4_3:54903435-54903454 Msa0648440:CDS 50.0%
TGGGCCTTGAAGTCCATCAA+GGG + chr4_3:54903442-54903461 None:intergenic 50.0%
CTTCAAGGCCCAGTCTATGT+AGG - chr4_3:54903450-54903469 Msa0648440:CDS 50.0%
! AGCCGGTTCCTACATAGACT+GGG + chr4_3:54903461-54903480 None:intergenic 50.0%
GAACCGGCTGTCTGTTTAGA+AGG - chr4_3:54903472-54903491 Msa0648440:CDS 50.0%
GAAAGATGCGCGGTCTTCTT+TGG + chr4_3:54903529-54903548 None:intergenic 50.0%
!! CCTGTTCTCTTCTGAGGTGT+TGG + chr4_3:54903589-54903608 None:intergenic 50.0%
CCAACACCTCAGAAGAGAAC+AGG - chr4_3:54903586-54903605 Msa0648440:CDS 50.0%
TAGTGCCCTGTTCTCTTCTG+AGG + chr4_3:54903595-54903614 None:intergenic 50.0%
! CAGAAGAGAACAGGGCACTA+AGG - chr4_3:54903595-54903614 Msa0648440:CDS 50.0%
! AGAGAACAGGGCACTAAGGA+TGG - chr4_3:54903599-54903618 Msa0648440:CDS 50.0%
! GAGAACAGGGCACTAAGGAT+GGG - chr4_3:54903600-54903619 Msa0648440:CDS 50.0%
ATTCCAGTGGCACAGTTCCA+AGG - chr4_3:54903702-54903721 Msa0648440:CDS 50.0%
ACAGCAGGATGATCAGCAAG+TGG + chr4_3:54903732-54903751 None:intergenic 50.0%
!! GGTCGTCCATTTTTCACAGC+AGG + chr4_3:54903747-54903766 None:intergenic 50.0%
GTGAAAAATGGACGACCTCC+TGG - chr4_3:54903750-54903769 Msa0648440:intron 50.0%
GCTGCTTGATGCATCAACTG+TGG - chr4_3:54903794-54903813 Msa0648440:intron 50.0%
GGTATGAGGACAAGACTGAG+TGG - chr4_3:54903844-54903863 Msa0648440:intron 50.0%
CAGCGTGTTGGATGGATCTA+TGG - chr4_3:54903870-54903889 Msa0648440:intron 50.0%
GTTACTGAGGATGTGGTCAC+TGG - chr4_3:54903897-54903916 Msa0648440:intron 50.0%
!! CAGGTTCTTAGATGGGCTAC+TGG - chr4_3:54904020-54904039 Msa0648440:intron 50.0%
TAAACGGCTCCACTGTGGTA+TGG + chr4_3:54904582-54904601 None:intergenic 50.0%
GTTTGATGGGAAGAAGAGGG+AGG - chr4_3:54904660-54904679 Msa0648440:intron 50.0%
CATCATATCACTCCTCTGGG+TGG - chr4_3:54904724-54904743 Msa0648440:intron 50.0%
!! TGGTCTGGTTTGGTCTGGTC+AGG + chr4_3:54899298-54899317 None:intergenic 55.0%
AGTGCACTTACCACCCACTC+CGG - chr4_3:54900690-54900709 Msa0648440:CDS 55.0%
! CCTTTTGCACCAGCCATCTG+TGG + chr4_3:54900853-54900872 None:intergenic 55.0%
CCACAGATGGCTGGTGCAAA+AGG - chr4_3:54900850-54900869 Msa0648440:CDS 55.0%
ATAGGAGATGGGATGTGCCC+AGG - chr4_3:54900994-54901013 Msa0648440:CDS 55.0%
CCACTTCCTCCACCAAATGG+GGG - chr4_3:54901081-54901100 Msa0648440:CDS 55.0%
CACTTCCTCCACCAAATGGG+GGG - chr4_3:54901082-54901101 Msa0648440:CDS 55.0%
! TTAGACCCCCCATTTGGTGG+AGG + chr4_3:54901090-54901109 None:intergenic 55.0%
GACCATGGAGGCCACTAACA+AGG - chr4_3:54901307-54901326 Msa0648440:intron 55.0%
! TATGGGCTGAGAACAGCAGC+AGG + chr4_3:54901345-54901364 None:intergenic 55.0%
TATGTGTGACCCTCCAGTGC+AGG + chr4_3:54901891-54901910 None:intergenic 55.0%
TGACCTGCGACGGATAGAGT+CGG + chr4_3:54902451-54902470 None:intergenic 55.0%
! GCTGATGGATCTCATTGGCC+AGG - chr4_3:54902576-54902595 Msa0648440:intron 55.0%
GATCTCATTGGCCAGGGACT+TGG - chr4_3:54902583-54902602 Msa0648440:intron 55.0%
CTTTGCAACTGCGACCGCAA+TGG + chr4_3:54902910-54902929 None:intergenic 55.0%
AGCTGGGGCCATGAATGCAT+TGG - chr4_3:54903194-54903213 Msa0648440:CDS 55.0%
CTGGGCCTTGAAGTCCATCA+AGG + chr4_3:54903443-54903462 None:intergenic 55.0%
GGCCCAGTCTATGTAGGAAC+CGG - chr4_3:54903456-54903475 Msa0648440:CDS 55.0%
! CAGCCGGTTCCTACATAGAC+TGG + chr4_3:54903462-54903481 None:intergenic 55.0%
CTACCTTGGAACTGTGCCAC+TGG + chr4_3:54903708-54903727 None:intergenic 55.0%
CAGTGGCACAGTTCCAAGGT+AGG - chr4_3:54903706-54903725 Msa0648440:CDS 55.0%
GATCAGCAAGTGGCCTACCT+TGG + chr4_3:54903722-54903741 None:intergenic 55.0%
!! GGTATAGTGAGAGCACCAGG+AGG + chr4_3:54903768-54903787 None:intergenic 55.0%
!! CGAGGTATAGTGAGAGCACC+AGG + chr4_3:54903771-54903790 None:intergenic 55.0%
GATGCATCAAGCAGCTCACG+AGG + chr4_3:54903789-54903808 None:intergenic 55.0%
GATTGATGGGAGCAGTTCCG+CGG + chr4_3:54903983-54904002 None:intergenic 55.0%
CATCTAGCTGCCGTGCTTCA+AGG - chr4_3:54904365-54904384 Msa0648440:intron 55.0%
CCTAGTAAACGGCTCCACTG+TGG + chr4_3:54904587-54904606 None:intergenic 55.0%
CCACAGTGGAGCCGTTTACT+AGG - chr4_3:54904584-54904603 Msa0648440:intron 55.0%
CAGTGGAGCCGTTTACTAGG+CGG - chr4_3:54904587-54904606 Msa0648440:intron 55.0%
! GTGGATTGATAGCCACCCAG+AGG + chr4_3:54904739-54904758 None:intergenic 55.0%
GTGGCTATCAATCCACCAGC+CGG - chr4_3:54904743-54904762 Msa0648440:intron 55.0%
ACCGCCTATCTGGTCTGTAC+CGG + chr4_3:54904765-54904784 None:intergenic 55.0%
! GGTTGGTTATCCGGAGTGGG+TGG + chr4_3:54900703-54900722 None:intergenic 60.0%
! CCCCCATTTGGTGGAGGAAG+TGG + chr4_3:54901084-54901103 None:intergenic 60.0%
GACCTGCGACGGATAGAGTC+GGG + chr4_3:54902450-54902469 None:intergenic 60.0%
TGGTCACCCCTTGAGTGCTC+AGG + chr4_3:54902621-54902640 None:intergenic 60.0%
CACTCAAGGGGTGACCATGC+TGG - chr4_3:54902624-54902643 Msa0648440:intron 60.0%
GCCTCGGCTGTCATGTCCAA+CGG - chr4_3:54903222-54903241 Msa0648440:CDS 60.0%
ACCGTTGGACATGACAGCCG+AGG + chr4_3:54903226-54903245 None:intergenic 60.0%
ACTGAGTGGGGACAGCGTGT+TGG - chr4_3:54903858-54903877 Msa0648440:intron 60.0%
AGTGGGGACAGCGTGTTGGA+TGG - chr4_3:54903862-54903881 Msa0648440:intron 60.0%
ACTAAACGCGACGCCTTCCG+CGG - chr4_3:54903963-54903982 Msa0648440:intron 60.0%
!! ATCTGGTCTGTACCGGCTGG+TGG + chr4_3:54904758-54904777 None:intergenic 60.0%
! CCTATCTGGTCTGTACCGGC+TGG + chr4_3:54904761-54904780 None:intergenic 60.0%
CCAGCCGGTACAGACCAGAT+AGG - chr4_3:54904758-54904777 Msa0648440:five_prime_UTR 60.0%
GCCGGTACAGACCAGATAGG+CGG - chr4_3:54904761-54904780 Msa0648440:five_prime_UTR 60.0%
TGCCCGACTCTATCCGTCGC+AGG - chr4_3:54902445-54902464 Msa0648440:intron 65.0%
CGGTCTTCTTTGGCGCGTGG+AGG + chr4_3:54903519-54903538 None:intergenic 65.0%
GATGGGAGCAGTTCCGCGGA+AGG + chr4_3:54903979-54903998 None:intergenic 65.0%
GCGCGGTCTTCTTTGGCGCG+TGG + chr4_3:54903522-54903541 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 54899197 54905033 54899197 ID=Msa0648440;Name=Msa0648440
chr4_3 mRNA 54899197 54905033 54899197 ID=Msa0648440-mRNA-1;Parent=Msa0648440;Name=Msa0648440-mRNA-1;_AED=0.17;_eAED=0.17;_QI=312|1|1|1|0.66|0.5|4|231|1142
chr4_3 exon 54899197 54901182 54899197 ID=Msa0648440-mRNA-1:exon:13958;Parent=Msa0648440-mRNA-1
chr4_3 exon 54901574 54902381 54901574 ID=Msa0648440-mRNA-1:exon:13957;Parent=Msa0648440-mRNA-1
chr4_3 exon 54902863 54903762 54902863 ID=Msa0648440-mRNA-1:exon:13956;Parent=Msa0648440-mRNA-1
chr4_3 exon 54904756 54905033 54904756 ID=Msa0648440-mRNA-1:exon:13955;Parent=Msa0648440-mRNA-1
chr4_3 five_prime_UTR 54904756 54905033 54904756 ID=Msa0648440-mRNA-1:five_prime_utr;Parent=Msa0648440-mRNA-1
chr4_3 five_prime_UTR 54903729 54903762 54903729 ID=Msa0648440-mRNA-1:five_prime_utr;Parent=Msa0648440-mRNA-1
chr4_3 CDS 54902863 54903728 54902863 ID=Msa0648440-mRNA-1:cds;Parent=Msa0648440-mRNA-1
chr4_3 CDS 54901574 54902381 54901574 ID=Msa0648440-mRNA-1:cds;Parent=Msa0648440-mRNA-1
chr4_3 CDS 54899428 54901182 54899428 ID=Msa0648440-mRNA-1:cds;Parent=Msa0648440-mRNA-1
chr4_3 three_prime_UTR 54899197 54899427 54899197 ID=Msa0648440-mRNA-1:three_prime_utr;Parent=Msa0648440-mRNA-1
Gene Sequence

>Msa0648440

ATGAAGCCGAAATCATTACAAATGAGCAGATCATCTTTGTCAACATCTTCTGATGTATCTGAAGCACAGAAGCCTCCCTTACATCCAACCGTAACATTTGGCCGAAGAACTTCATCCGGTCGATACATCAGTTACTCCAGAGATGATCTTGATAGCGAGCTAGGAAGTAATGACTTCATGAACTATACAGTGCACTTACCACCCACTCCGGATAACCAACCTATGGATACCTCAATCTCGCAGAAAGTTGAGGAGCAGTATGTTTCAAGTTCTCTATTCACTGGAGGATTTAACAGTATTACCCGTGCACATCTAATGGATAAAGTTACAGAATCTGAAGTAAATCATCCACAGATGGCTGGTGCAAAAGGGTCGAAATGTGCTATTCCTGGCTGTGATTCTAAGGTGATGAGTGATGAACGTGGTGACGACATTCTTCCCTGTGAGTGTGATTATAAGATATGTAGAGATTGCTATATAGATGCAGTGAAAATAGGAGATGGGATGTGCCCAGGATGCAAAGAGCCATATAAGAACACAGAACTTGATGAAGTGGCTGTGAATAATGGAGGGCCACTTCCACTTCCTCCACCAAATGGGGGGTCTAAAATGGAGAGGAGATTGTCCTTGATGAAATCGACAAAGTCTGCGCTGATGAGAAGTCAAACTGGAGACTTTGATCACAATCGATGGTTGTTTGAAACAAAGGGGACATATGGTTATGGCAATGCAATATGGCCAAAGGAAGGGGATTTCGGAAATGGAAAAGATGGTGATGTTTCTGAGCCAACTGAATTGATGAGCCGACCATGGAGGCCACTAACAAGGAAGTTGAAGATACCTGCTGCTGTTCTCAGCCCATATCGTCTCATCATTTTTATCCGTTTGGTTGCTCTTGTGTTGTTCCTGCACTGGAGGGTCACACATAAAAATACGGATGCAGTCTGGTTATGGGGCATGTCTATAGTTTGTGAATTATGGTTTGCTTTCTCTTGGCTTCTTGATCAACTGCCCAAGCTATGCCCAGTAAATCGTTCTACAGATCTTAATGTTCTGAAGGAAAAATTTGAATCACCAAGTCCTAACAATCCTACAGGAAAGTCTGATCTTCCAGGCATAGATATCTTTGTTTCAACTGCTGATCCTGAGAAAGAACCACCACTTGTCACAGCAAACACCATCTTGTCGATTTTAGCTGCTGACTATCCAGTTGAGAAGCTTTCTTGCTATGTTTCTGATGATGGAGGTGCACTTTTAACTTTTGAGGCAATGGCCGAGGCTGCTAGCTTTGCTAATAACTGGGTTCCATTCTGCCGCAAACATGATATCGAGCCTAGGAATCCTGAATCATACTTCAGCTTAAAGAGAGATCCTTACAAAAACAAAGTGAAACCTGATTTCGTGAAGGATCGTAGAAGGTTGAAGCGTGAGTATGATGAGTTCAAGGTCAGAATCAATGGTTTGCCCGACTCTATCCGTCGCAGGTCAGATGCTTTTCACGCAAGAGAGGAAATCAAGGCCATGAAACATCAGAGACAAAATAGGGGTGATGAACCTGTTGAGCCTATAAAGGTTCAAAAAGCAACATGGATGGCTGATGGATCTCATTGGCCAGGGACTTGGTTGAACACTTCACCTGAGCACTCAAGGGGTGACCATGCTGGCATAATTCAGGTGATGTTGAAACCTCCAAGTGACGAGCCTCTTATTGGAAATGCTGATGATGCAAAGCTTATTGACCTGACCGATGTTGATATCCGTCTTCCCCTTCTTGTTTATGTTTCTAGAGAGAAACGTCCAGGTTACGATCACAACAAAAAAGCTGGGGCCATGAATGCATTGGTTAGAGCCTCGGCTGTCATGTCCAACGGTCCTTTTATACTTAACCTCGACTGTGATCACTATATATATAACTCCAAAGCAATGAGGGAAGGTATGTGCTTTATGATGGATCGTGGTGGCGATCGCCTCTGCTATGTCCAATTCCCTCAAAGGTTTGAGGGTATTGATCCCTCTGATAGATATGCTAATCACAACACCGTCTTCTTTGATGTTAACATGAGAGCCCTTGATGGACTTCAAGGCCCAGTCTATGTAGGAACCGGCTGTCTGTTTAGAAGGTTTGCTCTTTATGGTTTTGATCCTCCACGCGCCAAAGAAGACCGCGCATCTTTCTGTAGTTGTTGCTTTGGGCGTAATAAGAAGAAGCATGCCAACACCTCAGAAGAGAACAGGGCACTAAGGATGGGTGACGACTCTGATGATGAAGAGATGAATCTTTCACAATTCTCGAAGAAATTTGGGAACTCAAATATCCTTATTGACTCAATTCCAGTGGCACAGTTCCAAGGTAGGCCACTTGCTGATCATCCTGCTGTGAAAAATGGACGACCTCCTGGTGCTCTCACTATACCTCGTGAGCTGCTTGATGCATCAACTGTGGCAGAAGCCATCAGTGTGATTTCATGTTGGTATGAGGACAAGACTGAGTGGGGACAGCGTGTTGGATGGATCTATGGATCAGTTACTGAGGATGTGGTCACTGGTTATAGGATGCATAATAGAGGATGGAAGTCAGTTTACTGCGTAACTAAACGCGACGCCTTCCGCGGAACTGCTCCCATCAATCTCACTGATAGGTTGCATCAGGTTCTTAGATGGGCTACTGGCTCAGTTGAGATATTCTTCTCTAAAAACAATGCAATTATGGCCACCCGAAGAATGAAATTTCTTCAGAGGATAGCATACCTTAATGTTGGAATTTATCCATTCACTTCGTTTTTTCTTATTGTCTATTGCTTCCTGCCTGCACTGTCCCTCTTCTCTGGACAGTTCATTGTCCAAACACTCGATGTCACTTTTTTGGCTTACCTCTTGGCTATTACTGTGACACTGTGCATTCTTGCTGTGCTTGAAATTAAGTGGTCAGGAATTGAGCTGGAAGAATGGTGGAGAAATGAGCAGTTTTGGTTGATTGGAGGGACTAGTGCACATCTAGCTGCCGTGCTTCAAGGTTTACTCAAAGTCGTTGCAGGCATTGAAATCTCATTCACCTTGACTTCAAAATCTGGCGGTGATGATGTTGACGACGAGTATGCTGATCTGTATATTGTCAAATGGTCATCCCTTATGATACCGCCAATTGTAATCATGATGGTGAACTTGATAGGAATAGCTGTCGGAGTTAGCAGAACCATATACAGTACCATACCACAGTGGAGCCGTTTACTAGGCGGTGTTTTCTTCAGCTTTTGGGTCTTGGCTCATCTCTATCCTTTTGCAAAAGGTTTGATGGGAAGAAGAGGGAGGACACCCACCATTGTTTTTGTATGGTCGGGTCTAATAGCAATCATCATATCACTCCTCTGGGTGGCTATCAATCCACCAGCCGGTACAGACCAGATAGGCGGTTCATTCCAATTCCCATGA
Protein sequence

>Msa0648440

MKPKSLQMSRSSLSTSSDVSEAQKPPLHPTVTFGRRTSSGRYISYSRDDLDSELGSNDFMNYTVHLPPTPDNQPMDTSISQKVEEQYVSSSLFTGGFNSITRAHLMDKVTESEVNHPQMAGAKGSKCAIPGCDSKVMSDERGDDILPCECDYKICRDCYIDAVKIGDGMCPGCKEPYKNTELDEVAVNNGGPLPLPPPNGGSKMERRLSLMKSTKSALMRSQTGDFDHNRWLFETKGTYGYGNAIWPKEGDFGNGKDGDVSEPTELMSRPWRPLTRKLKIPAAVLSPYRLIIFIRLVALVLFLHWRVTHKNTDAVWLWGMSIVCELWFAFSWLLDQLPKLCPVNRSTDLNVLKEKFESPSPNNPTGKSDLPGIDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANNWVPFCRKHDIEPRNPESYFSLKRDPYKNKVKPDFVKDRRRLKREYDEFKVRINGLPDSIRRRSDAFHAREEIKAMKHQRQNRGDEPVEPIKVQKATWMADGSHWPGTWLNTSPEHSRGDHAGIIQVMLKPPSDEPLIGNADDAKLIDLTDVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAVMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRFALYGFDPPRAKEDRASFCSCCFGRNKKKHANTSEENRALRMGDDSDDEEMNLSQFSKKFGNSNILIDSIPVAQFQGRPLADHPAVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSKNNAIMATRRMKFLQRIAYLNVGIYPFTSFFLIVYCFLPALSLFSGQFIVQTLDVTFLAYLLAITVTLCILAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVVAGIEISFTLTSKSGGDDVDDEYADLYIVKWSSLMIPPIVIMMVNLIGIAVGVSRTIYSTIPQWSRLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAIIISLLWVAINPPAGTDQIGGSFQFP*