AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1023500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1023500 MtrunA17_Chr7g0241161 61.075 465 127 7 10 460 3 427 0.0 522
Msa1023500 MtrunA17_Chr7g0241421 54.970 493 168 11 9 460 1 480 6.28e-157 457
Msa1023500 MtrunA17_Chr7g0241251 56.064 437 173 7 12 437 2 430 2.98e-154 446
Msa1023500 MtrunA17_Chr1g0166321 52.863 454 193 5 9 444 1 451 3.77e-148 432
Msa1023500 MtrunA17_Chr7g0241261 52.370 443 186 5 18 452 5 430 5.35e-142 414
Msa1023500 MtrunA17_Chr7g0237451 49.698 497 182 12 9 462 1 472 4.53e-132 390
Msa1023500 MtrunA17_Chr7g0241201 58.491 371 140 4 10 370 3 369 1.63e-131 385
Msa1023500 MtrunA17_Chr7g0241431 49.061 479 165 12 28 460 1 446 1.19e-129 383
Msa1023500 MtrunA17_Chr7g0241431 28.745 247 124 9 22 236 220 446 5.42e-14 73.9
Msa1023500 MtrunA17_Chr7g0218371 49.095 497 153 12 9 460 1 442 1.20e-127 378
Msa1023500 MtrunA17_Chr7g0241271 62.162 333 116 5 9 333 1 331 9.42e-119 351
Msa1023500 MtrunA17_Chr7g0241331 40.990 505 239 11 20 473 2 498 3.20e-107 327
Msa1023500 MtrunA17_Chr7g0241331 29.412 238 134 10 19 234 254 479 1.46e-13 72.8
Msa1023500 MtrunA17_Chr7g0239921 40.000 505 250 11 1 474 19 501 7.62e-95 295
Msa1023500 MtrunA17_Chr7g0239731 39.095 486 240 10 17 462 4 473 1.39e-94 294
Msa1023500 MtrunA17_Chr7g0238971 40.373 483 239 11 12 458 2 471 1.23e-93 291
Msa1023500 MtrunA17_Chr7g0241291 52.597 308 126 6 165 456 9 312 1.32e-90 279
Msa1023500 MtrunA17_Chr7g0241291 26.364 220 133 6 19 234 116 310 6.31e-12 66.6
Msa1023500 MtrunA17_Chr7g0238961 38.878 517 236 13 17 474 260 755 4.16e-90 290
Msa1023500 MtrunA17_Chr7g0238961 32.440 373 188 14 13 347 2 348 2.17e-36 142
Msa1023500 MtrunA17_Chr7g0239911 40.129 466 213 11 22 437 10 459 2.43e-89 280
Msa1023500 MtrunA17_Chr7g0239911 26.267 217 124 7 271 454 13 226 2.37e-13 72.0
Msa1023500 MtrunA17_Chr7g0239831 40.719 501 237 14 16 474 3 485 2.37e-87 275
Msa1023500 MtrunA17_Chr7g0239851 39.279 499 241 16 14 474 4 478 4.77e-85 269
Msa1023500 MtrunA17_Chr7g0239851 26.778 239 160 4 1 234 237 465 5.52e-15 77.0
Msa1023500 MtrunA17_Chr3g0078631 41.775 462 216 14 21 458 21 453 5.20e-85 268
Msa1023500 MtrunA17_Chr4g0008511 35.853 516 253 14 16 473 2 497 9.51e-85 269
Msa1023500 MtrunA17_Chr7g0239891 38.213 526 225 18 9 460 1 500 1.95e-82 263
Msa1023500 MtrunA17_Chr7g0239841 37.587 431 219 9 16 408 4 422 5.12e-79 252
Msa1023500 MtrunA17_Chr7g0239901 39.919 491 230 12 21 462 37 511 6.81e-79 254
Msa1023500 MtrunA17_Chr7g0241211 62.500 192 70 1 269 460 1 190 6.15e-77 239
Msa1023500 MtrunA17_Chr7g0241211 27.014 211 124 7 25 234 3 184 5.99e-14 70.5
Msa1023500 MtrunA17_Chr4g0008481 33.527 516 264 12 16 462 3 508 1.43e-75 246
Msa1023500 MtrunA17_Chr7g0241511 43.923 362 126 8 158 457 8 354 1.30e-70 228
Msa1023500 MtrunA17_Chr7g0241511 26.047 215 140 7 16 219 99 305 1.38e-12 68.9
Msa1023500 MtrunA17_Chr4g0007631 32.613 509 272 13 12 459 2 500 5.13e-70 231
Msa1023500 MtrunA17_Chr4g0007341 33.403 476 247 16 11 437 2 456 2.31e-64 215
Msa1023500 MtrunA17_Chr4g0007251 33.595 509 254 16 9 463 1 479 1.66e-61 208
Msa1023500 MtrunA17_Chr4g0007271 29.941 511 260 10 12 463 2 473 5.50e-57 196
Msa1023500 MtrunA17_Chr2g0291981 70.732 123 35 1 9 130 1 123 1.60e-53 176
Msa1023500 MtrunA17_Chr7g0241171 61.224 147 55 1 314 460 3 147 1.91e-51 171
Msa1023500 MtrunA17_Chr7g0241311 50.286 175 75 5 23 186 11 184 1.19e-47 164
Msa1023500 MtrunA17_Chr7g0239791 38.129 278 154 5 196 462 3 273 1.54e-47 165
Msa1023500 MtrunA17_Chr7g0239791 27.311 238 142 7 3 234 53 265 7.81e-16 77.8
Msa1023500 MtrunA17_Chr7g0241361 45.291 223 98 4 22 240 16 218 6.26e-47 163
Msa1023500 MtrunA17_Chr3g0110221 32.902 386 164 11 101 447 1 330 1.54e-46 166
Msa1023500 MtrunA17_Chr7g0241231 56.944 144 54 2 19 154 4 147 1.73e-46 158
Msa1023500 MtrunA17_Chr7g0241351 44.335 203 107 3 20 218 14 214 3.79e-42 149
Msa1023500 MtrunA17_Chr7g0239861 31.116 421 226 14 78 460 4 398 1.09e-41 153
Msa1023500 MtrunA17_Chr4g0007231 39.035 228 111 8 16 219 3 226 1.04e-39 143
Msa1023500 MtrunA17_Chr7g0239761 35.473 296 142 8 8 295 17 271 5.66e-38 140
Msa1023500 MtrunA17_Chr7g0239741 39.713 209 107 4 265 460 21 223 1.71e-35 131
Msa1023500 MtrunA17_Chr7g0241301 54.545 121 30 2 12 132 2 97 9.05e-34 123
Msa1023500 MtrunA17_Chr1g0150201 49.686 159 70 5 101 252 1 156 1.32e-33 124
Msa1023500 MtrunA17_Chr1g0150211 61.224 98 38 0 269 366 1 98 1.37e-32 121
Msa1023500 MtrunA17_Chr7g0241181 54.701 117 53 0 257 373 3 119 4.38e-32 119
Msa1023500 MtrunA17_Chr7g0241181 33.654 104 63 2 9 111 1 99 6.12e-11 60.1
Msa1023500 MtrunA17_Chr4g0008491 29.412 391 182 11 95 473 2 310 7.63e-32 124
Msa1023500 MtrunA17_Chr7g0241281 51.163 129 33 1 309 437 1 99 2.73e-31 116
Msa1023500 MtrunA17_Chr7g0237481 55.752 113 47 1 254 366 3 112 1.66e-30 116
Msa1023500 MtrunA17_Chr7g0239751 39.252 214 103 6 23 224 33 231 1.72e-29 115
Msa1023500 MtrunA17_Chr2g0292001 41.463 164 65 3 309 441 1 164 4.79e-29 113
Msa1023500 MtrunA17_Chr7g0263451 33.929 280 138 8 218 464 2 267 9.30e-29 114
Msa1023500 MtrunA17_Chr1g0212741 31.818 242 145 4 13 239 2 238 4.90e-26 106
Msa1023500 MtrunA17_Chr8g0355351 30.705 241 146 7 14 240 5 238 2.61e-25 103
Msa1023500 MtrunA17_Chr8g0355351 27.273 231 132 7 257 453 3 231 2.08e-17 81.6
Msa1023500 MtrunA17_Chr2g0291991 46.667 120 63 1 184 303 1 119 1.76e-23 95.1
Msa1023500 MtrunA17_Chr7g0229201 29.461 241 146 4 16 239 4 237 4.98e-23 97.8
Msa1023500 MtrunA17_Chr0c02g0489781 29.461 241 146 4 16 239 4 237 4.98e-23 97.8
Msa1023500 MtrunA17_Chr7g0241321 34.043 188 88 3 309 460 1 188 1.54e-22 95.1
Msa1023500 MtrunA17_Chr4g0007321 30.496 282 148 9 218 458 11 285 1.24e-21 94.7
Msa1023500 MtrunA17_Chr4g0007321 29.545 264 137 11 3 241 47 286 3.93e-15 75.9
Msa1023500 MtrunA17_Chr7g0241191 42.308 130 62 5 101 220 1 127 1.79e-18 82.4
Msa1023500 MtrunA17_Chr7g0241501 81.250 48 9 0 28 75 1 48 3.95e-18 78.2
Msa1023500 MtrunA17_Chr8g0345251 25.849 383 218 13 124 460 16 378 1.32e-15 78.6
Msa1023500 MtrunA17_Chr7g0241221 55.714 70 29 1 173 240 2 71 2.56e-15 70.9
Msa1023500 MtrunA17_Chr7g0237471 42.149 121 56 6 109 217 1 119 9.90e-15 71.2
Msa1023500 MtrunA17_Chr1g0212761 32.558 129 74 3 17 140 2 122 3.96e-14 69.7
Msa1023500 MtrunA17_Chr7g0263461 71.429 42 12 0 23 64 40 81 4.82e-14 67.8
Msa1023500 MtrunA17_Chr1g0212771 39.560 91 50 1 16 106 3 88 2.57e-13 68.9
Msa1023500 MtrunA17_Chr7g0229211 38.750 80 44 1 16 95 2 76 1.14e-12 68.2
Msa1023500 MtrunA17_Chr8g0355371 40.000 80 43 1 16 95 2 76 4.36e-12 66.2
Msa1023500 MtrunA17_Chr0c02g0489791 37.500 80 45 1 16 95 2 76 1.05e-11 65.5
Msa1023500 MtrunA17_Chr1g0212781 37.113 97 54 2 22 116 6 97 1.99e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1023500 AT5G01150.1 31.663 499 286 11 15 473 3 486 2.91e-55 192
Msa1023500 AT5G01130.1 32.075 477 278 12 15 473 3 451 1.41e-53 186
Msa1023500 AT5G01120.1 30.060 499 300 10 23 473 10 507 4.51e-51 181
Msa1023500 AT3G09140.2 30.986 497 283 13 17 460 4 493 1.02e-50 180
Msa1023500 AT5G01140.1 29.569 487 284 10 15 473 3 458 7.36e-47 169
Msa1023500 AT3G09140.1 29.182 538 287 15 17 473 4 528 4.25e-45 165
Msa1023500 AT5G43240.1 31.055 512 282 14 23 473 10 511 7.70e-45 164
Msa1023500 AT5G43240.3 31.055 512 282 14 23 473 10 511 7.70e-45 164
Msa1023500 AT5G43240.4 31.055 512 282 14 23 473 10 511 7.70e-45 164
Msa1023500 AT3G09110.1 32.298 322 200 5 22 333 9 322 3.45e-42 153
Msa1023500 AT3G09120.1 33.019 318 186 8 19 319 3 310 2.48e-39 145
Msa1023500 AT5G37320.1 28.361 476 269 16 33 456 20 475 1.71e-34 135
Msa1023500 AT5G43240.2 29.395 347 189 8 173 473 31 367 4.01e-17 83.2

Find 75 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATTGAAGCAGTGAAATT+TGG 0.215494 7_1:-51404132 Msa1023500:CDS
AAGAGTGCCATTAACAATTA+TGG 0.233920 7_1:-51403079 Msa1023500:CDS
GATCCTAAATCCTCTCTTTC+GGG 0.240762 7_1:-51403111 Msa1023500:CDS
GAGGAAATTGTCGTTGATAT+TGG 0.290428 7_1:-51402970 Msa1023500:CDS
AAATCTTTGACCACAGATAT+TGG 0.298129 7_1:+51404067 None:intergenic
TGATCCTAAATCCTCTCTTT+CGG 0.322652 7_1:-51403112 Msa1023500:CDS
GATTTGTTTCTTGATGAAAA+TGG 0.322690 7_1:-51403859 Msa1023500:CDS
GTGTCTTTGTGGACGGTTTA+CGG 0.348361 7_1:-51403905 Msa1023500:CDS
CAAAGTTAGCTTGAAAGTTA+TGG 0.360081 7_1:-51404274 Msa1023500:CDS
CCTCCCGAAAGAGAGGATTT+AGG 0.363934 7_1:+51403108 None:intergenic
ATTTCCTCTATGTCATTTAG+AGG 0.364076 7_1:+51402985 None:intergenic
TCCGTAACCATAATTGTTAA+TGG 0.379272 7_1:+51403072 None:intergenic
AGTTTCTTAACATTGCCTTT+AGG 0.383949 7_1:-51404186 Msa1023500:CDS
CTACGTTTGCTTCAGATGAA+TGG 0.389089 7_1:-51403763 Msa1023500:CDS
TCAACATCTGCTTTGACTAA+TGG 0.392693 7_1:-51402819 Msa1023500:CDS
TCCACTCGAAACATTCTGTT+TGG 0.394895 7_1:-51403417 Msa1023500:CDS
GCCATTAACAATTATGGTTA+CGG 0.409007 7_1:-51403073 Msa1023500:CDS
TAACCTTCCATTGAGTTCCT+TGG 0.415613 7_1:+51404024 None:intergenic
GCTGCGTTTACTCACAAATC+AGG 0.417974 7_1:-51403156 Msa1023500:CDS
GAAGAGGGTAAGATTGGTAT+TGG 0.419917 7_1:-51403498 Msa1023500:CDS
ACTCACCTATGTACTGTTTG+AGG 0.434750 7_1:+51402796 None:intergenic
TGCAAATCAATCAAGTGAAC+AGG 0.437476 7_1:-51404301 Msa1023500:CDS
CAATCTGAAGAGGGTAAGAT+TGG 0.438944 7_1:-51403504 Msa1023500:CDS
AAGTTATGGTGGACAAAGTA+AGG 0.476932 7_1:-51404260 Msa1023500:CDS
CAATATTCAGCTTGAGCTTG+TGG 0.489898 7_1:+51403998 None:intergenic
GGTAAGATTGGTATTGGAAA+GGG 0.492219 7_1:-51403492 Msa1023500:CDS
AATATCAATGCAGCTTAAAG+AGG 0.495387 7_1:+51403308 None:intergenic
TGGAATCAGAAGTGTCTTTG+TGG 0.499620 7_1:-51403916 Msa1023500:CDS
GGAGTGTTGCAAATGCTAGA+AGG 0.519900 7_1:-51403336 Msa1023500:CDS
TGGTTCCTTACTCCCAATGT+AGG 0.523927 7_1:+51403198 None:intergenic
ATCAGAAGTGTCTTTGTGGA+CGG 0.527393 7_1:-51403912 Msa1023500:CDS
TCATCAAGAAACAAATCTCT+CGG 0.528729 7_1:+51403865 None:intergenic
AAAGTTGTGTATGCTGAGGC+TGG 0.537208 7_1:-51404234 Msa1023500:CDS
CGTTGATATTGGAGTGAAGG+AGG 0.544247 7_1:-51402959 Msa1023500:intron
TGTCGTTGATATTGGAGTGA+AGG 0.545995 7_1:-51402962 Msa1023500:CDS
TCTGACCGCAAACATCTCTC+AGG 0.547244 7_1:+51403258 None:intergenic
AGTCTTGCAATAGTACCTAA+AGG 0.556108 7_1:+51404171 None:intergenic
GGCTTCTTCAGGTTGCACAT+AGG 0.558224 7_1:+51401913 None:intergenic
ACAGCAACCAAGGAACTCAA+TGG 0.558269 7_1:-51404031 Msa1023500:CDS
GAAACCAACATATGCTGATG+TGG 0.560393 7_1:-51403532 Msa1023500:CDS
AACGCTACTTATCGGCAAGA+AGG 0.561476 7_1:-51403710 Msa1023500:CDS
GGGTAAGATTGGTATTGGAA+AGG 0.563253 7_1:-51403493 Msa1023500:CDS
ATACATCTGTAGTATTTCCT+CGG 0.565957 7_1:+51403967 None:intergenic
TATTGCAAGACTCGTTGCTA+AGG 0.567646 7_1:-51404160 Msa1023500:CDS
GCTGATGCTGATGAAACTAC+TGG 0.567871 7_1:-51403448 Msa1023500:CDS
GGTCCCTCTAAATGACATAG+AGG 0.569467 7_1:-51402989 Msa1023500:CDS
TTTCCTCTATGTCATTTAGA+GGG 0.570470 7_1:+51402986 None:intergenic
AAGCCCACATCAGCATATGT+TGG 0.571967 7_1:+51403528 None:intergenic
TGCAAATCCTCCCGAAAGAG+AGG 0.577572 7_1:+51403101 None:intergenic
CAAGAAACAAATCTCTCGGA+CGG 0.592120 7_1:+51403869 None:intergenic
ACTACAGATGTATTCAATGT+GGG 0.593405 7_1:-51403957 Msa1023500:CDS
AGTTAGCTTGAAAGTTATGG+TGG 0.596863 7_1:-51404271 Msa1023500:CDS
ATCAGCTTATCCTCTTCAGA+TGG 0.598589 7_1:+51403465 None:intergenic
CCTAAATCCTCTCTTTCGGG+AGG 0.609428 7_1:-51403108 Msa1023500:CDS
TTTAAGATAAAGTCTGTCAG+AGG 0.610371 7_1:+51403558 None:intergenic
CTCATATCTAGAGAGAATGA+AGG 0.611144 7_1:-51403010 Msa1023500:CDS
AATGGCCTCAAACAGTACAT+AGG 0.613552 7_1:-51402801 Msa1023500:intron
AGGAAATGCTACAGCAACCA+AGG 0.618418 7_1:-51404041 Msa1023500:CDS
TGAGTCCTGAGAGATGTTTG+CGG 0.621019 7_1:-51403263 Msa1023500:CDS
ACCAAACAGAATGTTTCGAG+TGG 0.623174 7_1:+51403416 None:intergenic
AAAGGGCTTACCATCTGAAG+AGG 0.626078 7_1:-51403475 Msa1023500:CDS
ACACTATCAAATGATGACAC+TGG 0.632849 7_1:+51403033 None:intergenic
GCTACTTATCGGCAAGAAGG+AGG 0.633101 7_1:-51403707 Msa1023500:intron
AAACCAACATATGCTGATGT+GGG 0.633184 7_1:-51403531 Msa1023500:CDS
ATCTAGATCACCAATATCTG+TGG 0.636073 7_1:-51404077 Msa1023500:CDS
TACTACAGATGTATTCAATG+TGG 0.641904 7_1:-51403958 Msa1023500:CDS
CAACCAAGGAACTCAATGGA+AGG 0.644395 7_1:-51404027 Msa1023500:CDS
ATTAGTCAAAGCAGATGTTG+AGG 0.644403 7_1:+51402821 None:intergenic
TGTGGGCTTACAATCTGAAG+AGG 0.646031 7_1:-51403514 Msa1023500:CDS
TAGCAGTGCAATCTTTACAA+TGG 0.647841 7_1:-51404331 Msa1023500:CDS
GTGGGCTTACAATCTGAAGA+GGG 0.663821 7_1:-51403513 Msa1023500:CDS
GATCATTAGGGATCACACAA+AGG 0.686381 7_1:+51403797 None:intergenic
TCTGTGGTCAAAGATTTGCA+AGG 0.689564 7_1:-51404061 Msa1023500:CDS
ATTTGCAACACTCCTCCCAG+AGG 0.732067 7_1:+51403345 None:intergenic
TGAATATTGATGACACACCG+AGG 0.765078 7_1:-51403984 Msa1023500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGCATTAATGTAAATAAA+CGG + chr7_1:51403734-51403753 None:intergenic 15.0%
!!! GATTTTGTTTTATAACATTT+GGG - chr7_1:51403790-51403809 Msa1023500:CDS 15.0%
!! TTATATATCTGTTTAATGAA+AGG - chr7_1:51403950-51403969 Msa1023500:CDS 15.0%
!!! ATAATGTATAAAGTGTTATG+AGG + chr7_1:51403484-51403503 None:intergenic 20.0%
!!! GGATTTTGTTTTATAACATT+TGG - chr7_1:51403789-51403808 Msa1023500:CDS 20.0%
!! CTTTAATAATCATTTGTACA+TGG + chr7_1:51403990-51404009 None:intergenic 20.0%
! AATATTGAAGCAGTGAAATT+TGG - chr7_1:51402101-51402120 Msa1023500:intron 25.0%
! CTTCTGATTCCAAATAAAAA+TGG + chr7_1:51402309-51402328 None:intergenic 25.0%
!! GATTTGTTTCTTGATGAAAA+TGG - chr7_1:51402374-51402393 Msa1023500:intron 25.0%
!!! TGATGAAAATGGTTTTGTTA+TGG - chr7_1:51402385-51402404 Msa1023500:intron 25.0%
! ATATCTGTGTTTATATGTGT+AGG - chr7_1:51402614-51402633 Msa1023500:intron 25.0%
! ATCGAGAAATTAAAAGGAAA+AGG + chr7_1:51403332-51403351 None:intergenic 25.0%
! TATGCAATCGAGAAATTAAA+AGG + chr7_1:51403338-51403357 None:intergenic 25.0%
! TATCTAATATCTATTGTGCA+GGG - chr7_1:51403363-51403382 Msa1023500:CDS 25.0%
! AACTACATACTACTACTAAT+TGG + chr7_1:51403615-51403634 None:intergenic 25.0%
! ATTAGTAGTAGTATGTAGTT+TGG - chr7_1:51403615-51403634 Msa1023500:intron 25.0%
! TACCATCTTCACATAAAAAT+TGG - chr7_1:51403684-51403703 Msa1023500:intron 25.0%
! ATTTACATTAATGCAAATCG+TGG - chr7_1:51403737-51403756 Msa1023500:CDS 25.0%
! TTTACATTAATGCAAATCGT+GGG - chr7_1:51403738-51403757 Msa1023500:CDS 25.0%
! CAAAGTTAGCTTGAAAGTTA+TGG - chr7_1:51401959-51401978 Msa1023500:intron 30.0%
AGTTTCTTAACATTGCCTTT+AGG - chr7_1:51402047-51402066 Msa1023500:intron 30.0%
AAATCTTTGACCACAGATAT+TGG + chr7_1:51402169-51402188 None:intergenic 30.0%
ATACATCTGTAGTATTTCCT+CGG + chr7_1:51402269-51402288 None:intergenic 30.0%
TACTACAGATGTATTCAATG+TGG - chr7_1:51402275-51402294 Msa1023500:intron 30.0%
ACTACAGATGTATTCAATGT+GGG - chr7_1:51402276-51402295 Msa1023500:intron 30.0%
!! GGAGATTGACCATTTTTATT+TGG - chr7_1:51402297-51402316 Msa1023500:intron 30.0%
TCATCAAGAAACAAATCTCT+CGG + chr7_1:51402371-51402390 None:intergenic 30.0%
!! GACTTTTAACTGGATCATTA+GGG + chr7_1:51402451-51402470 None:intergenic 30.0%
!! AGACTTTTAACTGGATCATT+AGG + chr7_1:51402452-51402471 None:intergenic 30.0%
! TTTAAGATAAAGTCTGTCAG+AGG + chr7_1:51402678-51402697 None:intergenic 30.0%
AATATCAATGCAGCTTAAAG+AGG + chr7_1:51402928-51402947 None:intergenic 30.0%
!!! CTGTTTTGATTGGTAATATC+TGG + chr7_1:51403058-51403077 None:intergenic 30.0%
! TACTCACAAATCAGGTTTTA+AGG - chr7_1:51403085-51403104 Msa1023500:CDS 30.0%
!! AAGAGTGCCATTAACAATTA+TGG - chr7_1:51403154-51403173 Msa1023500:CDS 30.0%
GCCATTAACAATTATGGTTA+CGG - chr7_1:51403160-51403179 Msa1023500:CDS 30.0%
TCCGTAACCATAATTGTTAA+TGG + chr7_1:51403164-51403183 None:intergenic 30.0%
! TTTCCTCTATGTCATTTAGA+GGG + chr7_1:51403250-51403269 None:intergenic 30.0%
! ATTTCCTCTATGTCATTTAG+AGG + chr7_1:51403251-51403270 None:intergenic 30.0%
GTATCTAATATCTATTGTGC+AGG - chr7_1:51403362-51403381 Msa1023500:CDS 30.0%
!!! AAGTGTTATGAGGTTTTGTT+TGG + chr7_1:51403474-51403493 None:intergenic 30.0%
TAGTTTGGTCTATTAGCTAA+GGG - chr7_1:51403630-51403649 Msa1023500:intron 30.0%
AAGTAAGTGGTTAACTCATT+CGG + chr7_1:51403659-51403678 None:intergenic 30.0%
AGATGGTATTAGTAAGTAAG+TGG + chr7_1:51403672-51403691 None:intergenic 30.0%
! TGCCAATTTTTATGTGAAGA+TGG + chr7_1:51403689-51403708 None:intergenic 30.0%
TAAAAATTGGCAAACCAGTA+AGG - chr7_1:51403697-51403716 Msa1023500:intron 30.0%
!! AAAATCCAGTGTTTTTAAGC+AGG + chr7_1:51403776-51403795 None:intergenic 30.0%
AGCTAGTGTGAAATATATAG+AGG - chr7_1:51404008-51404027 Msa1023500:CDS 30.0%
GACAGTTAATGTTGAGTAAA+TGG - chr7_1:51404030-51404049 Msa1023500:CDS 30.0%
GAACATAGAAAAAGAAGAGT+TGG - chr7_1:51404066-51404085 Msa1023500:CDS 30.0%
AAAAAGAAGAGTTGGAAGAA+AGG - chr7_1:51404074-51404093 Msa1023500:CDS 30.0%
!!! TGATCTTTTTTCCTTGATCA+TGG - chr7_1:51404124-51404143 Msa1023500:CDS 30.0%
TTCACACCATGATTAAATTG+AGG + chr7_1:51404225-51404244 None:intergenic 30.0%
! CAGGTATACTTGATGATTAA+GGG + chr7_1:51404258-51404277 None:intergenic 30.0%
! ACAGGTATACTTGATGATTA+AGG + chr7_1:51404259-51404278 None:intergenic 30.0%
TAGCAGTGCAATCTTTACAA+TGG - chr7_1:51401902-51401921 Msa1023500:CDS 35.0%
TGCAAATCAATCAAGTGAAC+AGG - chr7_1:51401932-51401951 Msa1023500:intron 35.0%
! AGTTAGCTTGAAAGTTATGG+TGG - chr7_1:51401962-51401981 Msa1023500:intron 35.0%
!! AAGTTATGGTGGACAAAGTA+AGG - chr7_1:51401973-51401992 Msa1023500:intron 35.0%
GAAAAAAGTTGTGTATGCTG+AGG - chr7_1:51401995-51402014 Msa1023500:intron 35.0%
AGTCTTGCAATAGTACCTAA+AGG + chr7_1:51402065-51402084 None:intergenic 35.0%
ATCTAGATCACCAATATCTG+TGG - chr7_1:51402156-51402175 Msa1023500:intron 35.0%
! AGCAAACGTAGACTTTTAAC+TGG + chr7_1:51402461-51402480 None:intergenic 35.0%
GAGAGAAAAACGCTACTTAT+CGG - chr7_1:51402515-51402534 Msa1023500:intron 35.0%
AAACCAACATATGCTGATGT+GGG - chr7_1:51402702-51402721 Msa1023500:intron 35.0%
! GGTAAGATTGGTATTGGAAA+GGG - chr7_1:51402741-51402760 Msa1023500:intron 35.0%
! TATAGCTGACGAAGATTTTG+CGG - chr7_1:51402839-51402858 Msa1023500:CDS 35.0%
!! AGTTTTCTCACTTTTCCTCT+GGG - chr7_1:51402873-51402892 Msa1023500:intron 35.0%
! CCTCGAATTTTTCCTACATT+GGG - chr7_1:51403023-51403042 Msa1023500:CDS 35.0%
! TTTTTCCTACATTGGGAGTA+AGG - chr7_1:51403030-51403049 Msa1023500:CDS 35.0%
TGATCCTAAATCCTCTCTTT+CGG - chr7_1:51403121-51403140 Msa1023500:CDS 35.0%
ACACTATCAAATGATGACAC+TGG + chr7_1:51403203-51403222 None:intergenic 35.0%
CTCATATCTAGAGAGAATGA+AGG - chr7_1:51403223-51403242 Msa1023500:CDS 35.0%
GAGGAAATTGTCGTTGATAT+TGG - chr7_1:51403263-51403282 Msa1023500:CDS 35.0%
ATTAGTCAAAGCAGATGTTG+AGG + chr7_1:51403415-51403434 None:intergenic 35.0%
TCAACATCTGCTTTGACTAA+TGG - chr7_1:51403414-51403433 Msa1023500:CDS 35.0%
CATACTACTACTAATTGGAC+AGG + chr7_1:51403610-51403629 None:intergenic 35.0%
GTAGTTTGGTCTATTAGCTA+AGG - chr7_1:51403629-51403648 Msa1023500:intron 35.0%
AGTTTGGTCTATTAGCTAAG+GGG - chr7_1:51403631-51403650 Msa1023500:intron 35.0%
!! GTTTTTAAGCAGGAATTGAG+TGG + chr7_1:51403766-51403785 None:intergenic 35.0%
CAATTCCTGCTTAAAAACAC+TGG - chr7_1:51403768-51403787 Msa1023500:CDS 35.0%
GTGCAACCTCAATTTAATCA+TGG - chr7_1:51404216-51404235 Msa1023500:CDS 35.0%
GACAACAAATTAGACAGAAC+AGG + chr7_1:51404277-51404296 None:intergenic 35.0%
!!! TTTCTTCTTTTGGCTTCTTC+AGG + chr7_1:51404334-51404353 None:intergenic 35.0%
TATTGCAAGACTCGTTGCTA+AGG - chr7_1:51402073-51402092 Msa1023500:intron 40.0%
TCTGTGGTCAAAGATTTGCA+AGG - chr7_1:51402172-51402191 Msa1023500:intron 40.0%
TAACCTTCCATTGAGTTCCT+TGG + chr7_1:51402212-51402231 None:intergenic 40.0%
CAATATTCAGCTTGAGCTTG+TGG + chr7_1:51402238-51402257 None:intergenic 40.0%
! TGAATATTGATGACACACCG+AGG - chr7_1:51402249-51402268 Msa1023500:intron 40.0%
!! TGGAATCAGAAGTGTCTTTG+TGG - chr7_1:51402317-51402336 Msa1023500:intron 40.0%
!! ATCAGAAGTGTCTTTGTGGA+CGG - chr7_1:51402321-51402340 Msa1023500:intron 40.0%
CAAGAAACAAATCTCTCGGA+CGG + chr7_1:51402367-51402386 None:intergenic 40.0%
GATCATTAGGGATCACACAA+AGG + chr7_1:51402439-51402458 None:intergenic 40.0%
CTACGTTTGCTTCAGATGAA+TGG - chr7_1:51402470-51402489 Msa1023500:intron 40.0%
GAAACCAACATATGCTGATG+TGG - chr7_1:51402701-51402720 Msa1023500:intron 40.0%
CAATCTGAAGAGGGTAAGAT+TGG - chr7_1:51402729-51402748 Msa1023500:intron 40.0%
GAAGAGGGTAAGATTGGTAT+TGG - chr7_1:51402735-51402754 Msa1023500:intron 40.0%
! GGGTAAGATTGGTATTGGAA+AGG - chr7_1:51402740-51402759 Msa1023500:intron 40.0%
ATCAGCTTATCCTCTTCAGA+TGG + chr7_1:51402771-51402790 None:intergenic 40.0%
TCCACTCGAAACATTCTGTT+TGG - chr7_1:51402816-51402835 Msa1023500:CDS 40.0%
ACCAAACAGAATGTTTCGAG+TGG + chr7_1:51402820-51402839 None:intergenic 40.0%
!! CAGTTTTCTCACTTTTCCTC+TGG - chr7_1:51402872-51402891 Msa1023500:intron 40.0%
! GCCTCGAATTTTTCCTACAT+TGG - chr7_1:51403022-51403041 Msa1023500:CDS 40.0%
CCCAATGTAGGAAAAATTCG+AGG + chr7_1:51403026-51403045 None:intergenic 40.0%
!!! GTAAACGCAGCTGTTTTGAT+TGG + chr7_1:51403068-51403087 None:intergenic 40.0%
GATCCTAAATCCTCTCTTTC+GGG - chr7_1:51403122-51403141 Msa1023500:CDS 40.0%
TGTCGTTGATATTGGAGTGA+AGG - chr7_1:51403271-51403290 Msa1023500:CDS 40.0%
TATTGGAGTGAAGGAGGTAA+AGG - chr7_1:51403280-51403299 Msa1023500:CDS 40.0%
ATTGGAGTGAAGGAGGTAAA+GGG - chr7_1:51403281-51403300 Msa1023500:CDS 40.0%
AATGGCCTCAAACAGTACAT+AGG - chr7_1:51403432-51403451 Msa1023500:CDS 40.0%
ACTCACCTATGTACTGTTTG+AGG + chr7_1:51403440-51403459 None:intergenic 40.0%
!! CGGTTATTTCTGATCCTTAC+TGG + chr7_1:51403714-51403733 None:intergenic 40.0%
CACATAGGATCATCTGTCAA+AGG + chr7_1:51404308-51404327 None:intergenic 40.0%
AAAGTTGTGTATGCTGAGGC+TGG - chr7_1:51401999-51402018 Msa1023500:intron 45.0%
AGGAAATGCTACAGCAACCA+AGG - chr7_1:51402192-51402211 Msa1023500:intron 45.0%
ACAGCAACCAAGGAACTCAA+TGG - chr7_1:51402202-51402221 Msa1023500:intron 45.0%
CAACCAAGGAACTCAATGGA+AGG - chr7_1:51402206-51402225 Msa1023500:intron 45.0%
GTGTCTTTGTGGACGGTTTA+CGG - chr7_1:51402328-51402347 Msa1023500:intron 45.0%
AACGCTACTTATCGGCAAGA+AGG - chr7_1:51402523-51402542 Msa1023500:intron 45.0%
AAGCCCACATCAGCATATGT+TGG + chr7_1:51402708-51402727 None:intergenic 45.0%
TGTGGGCTTACAATCTGAAG+AGG - chr7_1:51402719-51402738 Msa1023500:intron 45.0%
GTGGGCTTACAATCTGAAGA+GGG - chr7_1:51402720-51402739 Msa1023500:intron 45.0%
AAAGGGCTTACCATCTGAAG+AGG - chr7_1:51402758-51402777 Msa1023500:intron 45.0%
GCTGATGCTGATGAAACTAC+TGG - chr7_1:51402785-51402804 Msa1023500:intron 45.0%
!! TTTCTCACTTTTCCTCTGGG+AGG - chr7_1:51402876-51402895 Msa1023500:intron 45.0%
!! GGAGTGTTGCAAATGCTAGA+AGG - chr7_1:51402897-51402916 Msa1023500:intron 45.0%
TGAGTCCTGAGAGATGTTTG+CGG - chr7_1:51402970-51402989 Msa1023500:CDS 45.0%
TGGTTCCTTACTCCCAATGT+AGG + chr7_1:51403038-51403057 None:intergenic 45.0%
GCTGCGTTTACTCACAAATC+AGG - chr7_1:51403077-51403096 Msa1023500:CDS 45.0%
GGTCCCTCTAAATGACATAG+AGG - chr7_1:51403244-51403263 Msa1023500:CDS 45.0%
CGTTGATATTGGAGTGAAGG+AGG - chr7_1:51403274-51403293 Msa1023500:CDS 45.0%
GAAGCAAGTCACCATGATCA+AGG + chr7_1:51404138-51404157 None:intergenic 45.0%
GCTACTTATCGGCAAGAAGG+AGG - chr7_1:51402526-51402545 Msa1023500:intron 50.0%
!! CAGAGGAGTTTTCGAGAGCA+AGG + chr7_1:51402661-51402680 None:intergenic 50.0%
ATTTGCAACACTCCTCCCAG+AGG + chr7_1:51402891-51402910 None:intergenic 50.0%
TCTGACCGCAAACATCTCTC+AGG + chr7_1:51402978-51402997 None:intergenic 50.0%
CCTCCCGAAAGAGAGGATTT+AGG + chr7_1:51403128-51403147 None:intergenic 50.0%
CCTAAATCCTCTCTTTCGGG+AGG - chr7_1:51403125-51403144 Msa1023500:CDS 50.0%
TGCAAATCCTCCCGAAAGAG+AGG + chr7_1:51403135-51403154 None:intergenic 50.0%
!! GGCTTCTTCAGGTTGCACAT+AGG + chr7_1:51404323-51404342 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 51401897 51404358 51401897 ID=Msa1023500;Name=Msa1023500
chr7_1 mRNA 51401897 51404358 51401897 ID=Msa1023500-mRNA-1;Parent=Msa1023500;Name=Msa1023500-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.33|0|1|1|1|4|0|474
chr7_1 exon 51403708 51404358 51403708 ID=Msa1023500-mRNA-1:exon:10112;Parent=Msa1023500-mRNA-1
chr7_1 exon 51402960 51403619 51402960 ID=Msa1023500-mRNA-1:exon:10111;Parent=Msa1023500-mRNA-1
chr7_1 exon 51402802 51402871 51402802 ID=Msa1023500-mRNA-1:exon:10110;Parent=Msa1023500-mRNA-1
chr7_1 exon 51401897 51401940 51401897 ID=Msa1023500-mRNA-1:exon:10109;Parent=Msa1023500-mRNA-1
chr7_1 CDS 51403708 51404358 51403708 ID=Msa1023500-mRNA-1:cds;Parent=Msa1023500-mRNA-1
chr7_1 CDS 51402960 51403619 51402960 ID=Msa1023500-mRNA-1:cds;Parent=Msa1023500-mRNA-1
chr7_1 CDS 51402802 51402871 51402802 ID=Msa1023500-mRNA-1:cds;Parent=Msa1023500-mRNA-1
chr7_1 CDS 51401897 51401940 51401897 ID=Msa1023500-mRNA-1:cds;Parent=Msa1023500-mRNA-1
Gene Sequence

>Msa1023500

ATGGCTAGCAGTGCAATCTTTACAATGGCTAGCAGTGCAAATCAATCAAGTGAACAGGCTGACAAAGTTAGCTTGAAAGTTATGGTGGACAAAGTAAGGAAAAAAGTTGTGTATGCTGAGGCTGGAAAAGATTTTGTTGATGTTCTTTTCAGTTTCTTAACATTGCCTTTAGGTACTATTGCAAGACTCGTTGCTAAGGACTCAAATATTGAAGCAGTGAAATTTGGCAGCATTAGCTCACTGTATCAAAGTGTGACAGATCTAGATCACCAATATCTGTGGTCAAAGATTTGCAAGGAAATGCTACAGCAACCAAGGAACTCAATGGAAGGTTACTGCCACAAGCTCAAGCTGAATATTGATGACACACCGAGGAAATACTACAGATGTATTCAATGTGGGAGATTGACCATTTTTATTTGGAATCAGAAGTGTCTTTGTGGACGGTTTACGGAAACAGAAGATATCCGTCCGAGAGATTTGTTTCTTGATGAAAATGGTTTTGTTATGGAAACTGCTTCTTTTATAATTCATGACAACCTTTGTGTGATCCCTAATGATCCAGTTAAAAGTCTACGTTTGCTTCAGATGAATGGAATCAATGACATAGCAGATATCGAGAGAAAAACGCTACTTATCGGCAAGAAGGAGGTTGTTGATCTTCTCAAGTTGTCCTTGCTCTCGAAAACTCCTCTGACAGACTTTATCTTAAAGAAGAAACCAACATATGCTGATGTGGGCTTACAATCTGAAGAGGGTAAGATTGGTATTGGAAAGGGCTTACCATCTGAAGAGGATAAGCTGATGCTGATGAAACTACTGGTTAGAAAATCCACTCGAAACATTCTGTTTGGTATAGCTGACGAAGATTTTGCGGACTTACTTTTCAGTTTTCTCACTTTTCCTCTGGGAGGAGTGTTGCAAATGCTAGAAGGATTCTCCTCTTTAAGCTGCATTGATATTTTATATAAAAGCATGACTGAGTTGAGTCCTGAGAGATGTTTGCGGTCAGATGAACTTAAAAACAAACTAAGTAAGCCTCGAATTTTTCCTACATTGGGAGTAAGGAACCAGATATTACCAATCAAAACAGCTGCGTTTACTCACAAATCAGGTTTTAAGGTCTTTGAAATTATTGATCCTAAATCCTCTCTTTCGGGAGGATTTGCAAGAGTGCCATTAACAATTATGGTTACGGATGACTTGCTTGTGACTCCAGTGTCATCATTTGATAGTGTCTCATATCTAGAGAGAATGAAGGTCCCTCTAAATGACATAGAGGAAATTGTCGTTGATATTGGAGTGAAGGAGGGTCTGAGCATACTAAAAGCTTCATTGACCTCAACATCTGCTTTGACTAATGGCCTCAAACAGTACATAGATGATCCTATGTGCAACCTGAAGAAGCCAAAAGAAGAAAAATGA

Protein sequence

>Msa1023500

MASSAIFTMASSANQSSEQADKVSLKVMVDKVRKKVVYAEAGKDFVDVLFSFLTLPLGTIARLVAKDSNIEAVKFGSISSLYQSVTDLDHQYLWSKICKEMLQQPRNSMEGYCHKLKLNIDDTPRKYYRCIQCGRLTIFIWNQKCLCGRFTETEDIRPRDLFLDENGFVMETASFIIHDNLCVIPNDPVKSLRLLQMNGINDIADIERKTLLIGKKEVVDLLKLSLLSKTPLTDFILKKKPTYADVGLQSEEGKIGIGKGLPSEEDKLMLMKLLVRKSTRNILFGIADEDFADLLFSFLTFPLGGVLQMLEGFSSLSCIDILYKSMTELSPERCLRSDELKNKLSKPRIFPTLGVRNQILPIKTAAFTHKSGFKVFEIIDPKSSLSGGFARVPLTIMVTDDLLVTPVSSFDSVSYLERMKVPLNDIEEIVVDIGVKEGLSILKASLTSTSALTNGLKQYIDDPMCNLKKPKEEK*