AlfalfaGEDB | Msa0026660

M. sativa cultivar zhongmu-4 / Msa0026660

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0019752 GO:0019932 GO:0019933 GO:0019935 GO:0023052 GO:0030587 GO:0032502 GO:0032787 GO:0035556 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120
PFAM: PF02036.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0026660	sp\|Q9FMN0\|SCP2_ARATH	79.508	122	25	0	4	125	2	123	1.20e-67	202

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0026660	-0.804585	2.012776e-49	-8.615850e-47
Msa0004540	Msa0026660	0.832755	7.888449e-56	-8.615850e-47
Msa0006880	Msa0026660	0.830219	3.322693e-55	-8.615850e-47
Msa0007850	Msa0026660	0.850041	2.193356e-60	-8.615850e-47
Msa0008090	Msa0026660	0.812871	3.408427e-51	-8.615850e-47
Msa0008840	Msa0026660	0.814277	1.672210e-51	-8.615850e-47
Msa0015680	Msa0026660	0.808841	2.540323e-50	-8.615850e-47
Msa0020390	Msa0026660	0.807463	4.992543e-50	-8.615850e-47
Msa0026660	Msa0027580	0.832976	6.951223e-56	-8.615850e-47
Msa0026660	Msa0029260	0.842915	1.930947e-58	-8.615850e-47

Showing 1 to 10 of 366 entries

Previous1 2 3 4 5…37Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0026660	MtrunA17_Chr1g0153381	99.200	125	1	0	1	125	1	125	6.34e-88	251

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0026660	AT5G42890.1	79.508	122	25	0	4	125	2	123	1.22e-68	202

Showing 1 to 1 of 1 entries

Previous1Next

Find 43 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTCATGAAAGCAATCTG+TGG	0.609703	1_1:+50554016	None:intergenic
AAGAAAGGAGAAGTTACCAA+AGG	0.658788	1_1:-50554901	Msa0026660:intron
AAGTCTATACTTGTGAATGC+TGG	0.407434	1_1:-50553503	Msa0026660:three_prime_UTR
AATATAGTTATGGATAATGA+AGG	0.544077	1_1:-50553690	Msa0026660:three_prime_UTR
ACAAGTATAGACTTAAATAT+AGG	0.446049	1_1:+50553512	None:intergenic
ACGCAACAACCAAACCACCA+TGG	0.686477	1_1:-50555182	Msa0026660:exon
ACGTTAGATCATCATTCCTA+AGG	0.532509	1_1:-50553732	Msa0026660:three_prime_UTR
ACTTTGTTAAGGTTGCATTA+GGG	0.521418	1_1:-50554048	Msa0026660:CDS
AGACATCTCTGCTCACATCT+TGG	0.471053	1_1:+50553819	None:intergenic
AGGGGTGCAATGAAGATTAA+GGG	0.479063	1_1:-50553892	Msa0026660:CDS

Showing 1 to 10 of 43 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATTGTAGTTACTGATGCAT+TGG	-	chr1_1:50554051-50554070	Msa0026660:CDS	30.0%
TGGATGAGATACAATTATGT+TGG	-	chr1_1:50554173-50554192	Msa0026660:intron	30.0%
GTAAATGAAAAAGTTGCATC+TGG	+	chr1_1:50554663-50554682	None:intergenic	30.0%
TACAGATGAAGACTTTGTTA+AGG	-	chr1_1:50554680-50554699	Msa0026660:intron	30.0%
ACTTTGTTAAGGTTGCATTA+GGG	-	chr1_1:50554691-50554710	Msa0026660:intron	30.0%
AATAGATACAAGGAAGTGAA+TGG	+	chr1_1:50554809-50554828	None:intergenic	30.0%
TAACTATAGATATACTCCTC+AGG	+	chr1_1:50554984-50555003	None:intergenic	30.0%
GGTTCATGAGAATATAGTTA+TGG	-	chr1_1:50555039-50555058	Msa0026660:intron	30.0%
TGCATCAATCCAAGTATTAA+TGG	+	chr1_1:50555199-50555218	None:intergenic	30.0%
TACACATGACACACAAATAT+AGG	+	chr1_1:50555285-50555304	None:intergenic	30.0%

Showing 1 to 10 of 221 entries

Previous1 2 3 4 5…23Next

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	50553444	50555317	50553444	ID=Msa0026660;Name=Msa0026660
chr1_1	mRNA	50553444	50555317	50553444	ID=Msa0026660-mRNA-1;Parent=Msa0026660;Name=Msa0026660-mRNA-1;_AED=0.04;_eAED=0.04;_QI=132\|1\|1\|1\|1\|1\|4\|387\|125
chr1_1	exon	50553444	50553912	50553444	ID=Msa0026660-mRNA-1:exon:14672;Parent=Msa0026660-mRNA-1
chr1_1	exon	50554019	50554121	50554019	ID=Msa0026660-mRNA-1:exon:14671;Parent=Msa0026660-mRNA-1
chr1_1	exon	50554902	50554962	50554902	ID=Msa0026660-mRNA-1:exon:14670;Parent=Msa0026660-mRNA-1
chr1_1	exon	50555054	50555317	50555054	ID=Msa0026660-mRNA-1:exon:14669;Parent=Msa0026660-mRNA-1
chr1_1	five_prime_UTR	50555186	50555317	50555186	ID=Msa0026660-mRNA-1:five_prime_utr;Parent=Msa0026660-mRNA-1
chr1_1	CDS	50555054	50555185	50555054	ID=Msa0026660-mRNA-1:cds;Parent=Msa0026660-mRNA-1
chr1_1	CDS	50554902	50554962	50554902	ID=Msa0026660-mRNA-1:cds;Parent=Msa0026660-mRNA-1
chr1_1	CDS	50554019	50554121	50554019	ID=Msa0026660-mRNA-1:cds;Parent=Msa0026660-mRNA-1
chr1_1	CDS	50553831	50553912	50553831	ID=Msa0026660-mRNA-1:cds;Parent=Msa0026660-mRNA-1
chr1_1	three_prime_UTR	50553444	50553830	50553444	ID=Msa0026660-mRNA-1:three_prime_utr;Parent=Msa0026660-mRNA-1

Gene Sequence	>Msa0026660 ATGGCTGATTCATCATCGAATCTGAAATCAGAAGCGATAATCGACTTAATGAAACAACACTTTTCCACCGACGCTGGCAAAAAACTCACCGAAAAAATTGGTCTCGTTTATCAGTTTCAAATTGCTCCTAAGAAAATTGGAATCAATGAAGTTACATATACCGTTGATCTCAAGAAAGGAGAAGTTACCAAAGGGGCATATGAAGGTGGGAAGCCAGATGCAACTTTTTCATTTACAGATGAAGACTTTGTTAAGGTTGCATTAGGGAAGATGAATCCACAGATTGCTTTCATGAGGGGTGCAATGAAGATTAAGGGAAGTTTGAGTGCTGCTCAGAAATTTACTCCGGATATCTTCCCAAAGCCTTCCAAGATGTGA
Protein sequence	>Msa0026660 MADSSSNLKSEAIIDLMKQHFSTDAGKKLTEKIGLVYQFQIAPKKIGINEVTYTVDLKKGEVTKGAYEGGKPDATFSFTDEDFVKVALGKMNPQIAFMRGAMKIKGSLSAAQKFTPDIFPKPSKM*