AlfalfaGEDB | Msa0070840

M. sativa cultivar zhongmu-4 / Msa0070840

KEGG: K02989
GO: GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00177.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0070840	XP_013467694.1	99.163	239	2	0	1	239	1	239	2.56e-175	491

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0070840	sp\|O65731\|RS5_CICAR	94.388	196	10	1	45	239	2	197	6.62e-133	375

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0070840	A0A072VJE7	99.163	239	2	0	1	239	1	239	1.22e-175	491

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0027590	Msa0070840	0.807408	5.130149e-50	-8.615850e-47
Msa0040220	Msa0070840	0.805729	1.159928e-49	-8.615850e-47
Msa0070840	Msa0075350	0.811694	6.160403e-51	-8.615850e-47
Msa0070840	Msa0113920	0.810831	9.479558e-51	-8.615850e-47
Msa0070840	Msa0191450	0.814074	1.854032e-51	-8.615850e-47
Msa0070840	Msa0192750	0.805750	1.147980e-49	-8.615850e-47
Msa0070840	Msa0210360	0.812443	4.229008e-51	-8.615850e-47
Msa0070840	Msa0269180	0.808564	2.911384e-50	-8.615850e-47
Msa0070840	Msa0335840	0.801494	8.767212e-49	-8.615850e-47
Msa0070840	Msa0369410	0.830565	2.733570e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0070840	MtrunA17_Chr1g0176261	99.163	239	2	0	1	239	1	239	2.35e-179	491
Msa0070840	MtrunA17_Chr7g0268431	97.000	200	4	1	40	239	9	206	7.91e-142	395

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0070840	AT2G37270.1	92.105	190	14	1	51	239	18	207	5.54e-129	363
Msa0070840	AT2G37270.2	92.105	190	14	1	51	239	18	207	5.54e-129	363
Msa0070840	AT3G11940.1	90.000	190	18	1	51	239	18	207	3.57e-127	358
Msa0070840	AT3G11940.2	90.000	190	18	1	51	239	18	207	3.57e-127	358

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Find 69 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGAACGAACCGTGAATG+TGG	0.685162	1_2:-41714719	None:intergenic
AACCGTGAATGTGGTGGATG+CGG	0.578022	1_2:-41714710	None:intergenic
AACTGACCAGAACCCGATTC+AGG	0.391358	1_2:+41715574	Msa0070840:CDS
AAGTCAAGCTCTTCAACCGC+TGG	0.503610	1_2:+41714869	Msa0070840:CDS
AATGTGATAAACCCTAATTT+TGG	0.442303	1_2:-41714649	None:intergenic
AATTGTCTTAATATTTCTAA+AGG	0.465228	1_2:-41717661	None:intergenic
ACATATGTTCCACACACTGC+TGG	0.537649	1_2:+41715404	Msa0070840:CDS
ACCAGTAGTTAGAAGATAGA+TGG	0.507365	1_2:-41717625	None:intergenic
ACTAACTCTCTCATGATGCA+TGG	0.563337	1_2:+41715482	Msa0070840:CDS
ACTCTCTCATGATGCATGGG+AGG	0.648954	1_2:+41715486	Msa0070840:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAACAATGGATACAGAAA+AGG	-	chr1_2:41714770-41714789	None:intergenic	30.0%
AAACGAAGAATGAGAAACAA+TGG	-	chr1_2:41714782-41714801	None:intergenic	30.0%
AAACAATAAGCTGGAATGAT+GGG	-	chr1_2:41716190-41716209	None:intergenic	30.0%
AAAACAATAAGCTGGAATGA+TGG	-	chr1_2:41716191-41716210	None:intergenic	30.0%
AATACATAATGCCATCATTC+TGG	-	chr1_2:41716514-41716533	None:intergenic	30.0%
ACACGTGTTTGGTAAAAAAA+GGG	-	chr1_2:41716726-41716745	None:intergenic	30.0%
AATGGCATATTTAAGCAACA+AGG	-	chr1_2:41717253-41717272	None:intergenic	30.0%
CAACCTCAAAATGTAAACAA+TGG	-	chr1_2:41717271-41717290	None:intergenic	30.0%
GTTAATGTGGACTTGTAATT+AGG	+	chr1_2:41717313-41717332	Msa0070840:intron	30.0%
GTAATTAGGATGTTTCCAAA+AGG	+	chr1_2:41717327-41717346	Msa0070840:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	41714636	41718189	41714636	ID=Msa0070840;Name=Msa0070840
chr1_2	mRNA	41714636	41718189	41714636	ID=Msa0070840-mRNA-1;Parent=Msa0070840;Name=Msa0070840-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|1\|0.8\|1\|0.75\|0.6\|5\|281\|239
chr1_2	exon	41714636	41714729	41714636	ID=Msa0070840-mRNA-1:exon:12776;Parent=Msa0070840-mRNA-1
chr1_2	exon	41714812	41714909	41714812	ID=Msa0070840-mRNA-1:exon:12777;Parent=Msa0070840-mRNA-1
chr1_2	exon	41715353	41715621	41715353	ID=Msa0070840-mRNA-1:exon:12778;Parent=Msa0070840-mRNA-1
chr1_2	exon	41717533	41717736	41717533	ID=Msa0070840-mRNA-1:exon:12779;Parent=Msa0070840-mRNA-1
chr1_2	exon	41717854	41718189	41717854	ID=Msa0070840-mRNA-1:exon:12780;Parent=Msa0070840-mRNA-1
chr1_2	CDS	41714636	41714729	41714636	ID=Msa0070840-mRNA-1:cds;Parent=Msa0070840-mRNA-1
chr1_2	CDS	41714812	41714909	41714812	ID=Msa0070840-mRNA-1:cds;Parent=Msa0070840-mRNA-1
chr1_2	CDS	41715353	41715621	41715353	ID=Msa0070840-mRNA-1:cds;Parent=Msa0070840-mRNA-1
chr1_2	CDS	41717533	41717736	41717533	ID=Msa0070840-mRNA-1:cds;Parent=Msa0070840-mRNA-1
chr1_2	CDS	41717854	41717908	41717854	ID=Msa0070840-mRNA-1:cds;Parent=Msa0070840-mRNA-1
chr1_2	three_prime_UTR	41717909	41718189	41717909	ID=Msa0070840-mRNA-1:three_prime_utr;Parent=Msa0070840-mRNA-1

Gene Sequence

>Msa0070840

ATGAACCAATGCACCAAAATTAGGGTTTATCACATTCCATACCTTCTCCATTCTCAGCAGCTTCGGTTTGGTTGCCGCATCCACCACATTCACGCCATGGCTGATGTCATTGAAGAACCTGTTGCAGTCGTTTCAGATCCAAACCTGATCGAAGTCAAGCTCTTCAACCGCTGGAGCTTCGATGACGTTCAGATTACTGATTTGTCTCTTGGGGATTACATTGGAGCAAGATCCAAACATGCAACATATGTTCCACACACTGCTGGTAGATACTCAAAGAAGCGATTCAGGAAAGCTCAGTGTCCCATTGTTGAGAGGCTCACTAACTCTCTCATGATGCATGGGAGGAACAATGGAAAGAAGCTTATGGCAGTTAGGATCATTAAGCATGCTATGGAGATTATTCATTTGTTAACTGACCAGAACCCGATTCAGGTCATTGTTGATGCTGTCGTCAACAGTGGTCCTCGTGAAGATGCAACTCGTATTGGTTCTGCTGGAGTTGTAAGAAGACAGGCTGTGGATATCTCACCCCTTCGTCGTGTGAATCAAGCCATCTATCTTCTAACTACTGGTGCACGTGAAGCTGCCTTTAGAAATATTAAGACAATTGCTGAATGTCTTGCTGATGAACTTATTAATGCAGCAAAAGGATCATCCAACAGCTATGCAATCAAGAAAAAAGATGAAATTGAAAGAGTTGCTAAGGCAAATCGTTAA

Protein sequence

>Msa0070840

MNQCTKIRVYHIPYLLHSQQLRFGCRIHHIHAMADVIEEPVAVVSDPNLIEVKLFNRWSFDDVQITDLSLGDYIGARSKHATYVPHTAGRYSKKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR*