Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070840 | XP_013467694.1 | 99.163 | 239 | 2 | 0 | 1 | 239 | 1 | 239 | 2.56e-175 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070840 | sp|O65731|RS5_CICAR | 94.388 | 196 | 10 | 1 | 45 | 239 | 2 | 197 | 6.62e-133 | 375 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070840 | A0A072VJE7 | 99.163 | 239 | 2 | 0 | 1 | 239 | 1 | 239 | 1.22e-175 | 491 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027590 | Msa0070840 | 0.807408 | 5.130149e-50 | -8.615850e-47 |
| Msa0040220 | Msa0070840 | 0.805729 | 1.159928e-49 | -8.615850e-47 |
| Msa0070840 | Msa0075350 | 0.811694 | 6.160403e-51 | -8.615850e-47 |
| Msa0070840 | Msa0113920 | 0.810831 | 9.479558e-51 | -8.615850e-47 |
| Msa0070840 | Msa0191450 | 0.814074 | 1.854032e-51 | -8.615850e-47 |
| Msa0070840 | Msa0192750 | 0.805750 | 1.147980e-49 | -8.615850e-47 |
| Msa0070840 | Msa0210360 | 0.812443 | 4.229008e-51 | -8.615850e-47 |
| Msa0070840 | Msa0269180 | 0.808564 | 2.911384e-50 | -8.615850e-47 |
| Msa0070840 | Msa0335840 | 0.801494 | 8.767212e-49 | -8.615850e-47 |
| Msa0070840 | Msa0369410 | 0.830565 | 2.733570e-55 | -8.615850e-47 |
| Msa0070840 | Msa0426090 | 0.850359 | 1.787130e-60 | -8.615850e-47 |
| Msa0070840 | Msa0426250 | 0.827001 | 1.990751e-54 | -8.615850e-47 |
| Msa0070840 | Msa0463520 | 0.808889 | 2.481144e-50 | -8.615850e-47 |
| Msa0070840 | Msa0472480 | 0.849839 | 2.499381e-60 | -8.615850e-47 |
| Msa0070840 | Msa0475810 | 0.805885 | 1.075521e-49 | -8.615850e-47 |
| Msa0070840 | Msa0623370 | 0.808333 | 3.260456e-50 | -8.615850e-47 |
| Msa0070840 | Msa0705800 | 0.808167 | 3.537612e-50 | -8.615850e-47 |
| Msa0070840 | Msa0758420 | 0.802122 | 6.517619e-49 | -8.615850e-47 |
| Msa0070840 | Msa0788380 | 0.823721 | 1.188980e-53 | -8.615850e-47 |
| Msa0070840 | Msa0799830 | 0.805396 | 1.362040e-49 | -8.615850e-47 |
| Msa0070840 | Msa1040160 | 0.852301 | 5.050326e-61 | -8.615850e-47 |
| Msa0070840 | Msa1041680 | 0.836580 | 8.608053e-57 | -8.615850e-47 |
| Msa0070840 | Msa1042100 | 0.842531 | 2.442508e-58 | -8.615850e-47 |
| Msa0070840 | Msa1054280 | 0.808973 | 2.380100e-50 | -8.615850e-47 |
| Msa0070840 | Msa1058700 | 0.805636 | 1.213384e-49 | -8.615850e-47 |
| Msa0070840 | Msa1083370 | 0.850317 | 1.835762e-60 | -8.615850e-47 |
| Msa0070840 | Msa1166570 | 0.842405 | 2.637792e-58 | -8.615850e-47 |
| Msa0070840 | Msa1167550 | 0.812075 | 5.087509e-51 | -8.615850e-47 |
| Msa0070840 | Msa1180000 | 0.812435 | 4.245116e-51 | -8.615850e-47 |
| Msa0070840 | Msa1237040 | 0.814510 | 1.485181e-51 | -8.615850e-47 |
| Msa0070840 | Msa1240270 | 0.820961 | 5.201864e-53 | -8.615850e-47 |
| Msa0070840 | Msa1263620 | 0.806660 | 7.386517e-50 | -8.615850e-47 |
| Msa0070840 | Msa1270640 | 0.802075 | 6.663038e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070840 | MtrunA17_Chr1g0176261 | 99.163 | 239 | 2 | 0 | 1 | 239 | 1 | 239 | 2.35e-179 | 491 |
| Msa0070840 | MtrunA17_Chr7g0268431 | 97.000 | 200 | 4 | 1 | 40 | 239 | 9 | 206 | 7.91e-142 | 395 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070840 | AT2G37270.1 | 92.105 | 190 | 14 | 1 | 51 | 239 | 18 | 207 | 5.54e-129 | 363 |
| Msa0070840 | AT2G37270.2 | 92.105 | 190 | 14 | 1 | 51 | 239 | 18 | 207 | 5.54e-129 | 363 |
| Msa0070840 | AT3G11940.1 | 90.000 | 190 | 18 | 1 | 51 | 239 | 18 | 207 | 3.57e-127 | 358 |
| Msa0070840 | AT3G11940.2 | 90.000 | 190 | 18 | 1 | 51 | 239 | 18 | 207 | 3.57e-127 | 358 |
Find 69 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACCAATGCACCAAAATT+AGG | 0.162365 | 1_2:+41714637 | Msa0070840:CDS |
| ATAATTTGAATGATGGTTTA+TGG | 0.227105 | 1_2:+41718097 | Msa0070840:three_prime_UTR |
| CAGATTACTGATTTGTCTCT+TGG | 0.294356 | 1_2:+41715350 | Msa0070840:intron |
| CTTTATAACCAACCATGATT+TGG | 0.316830 | 1_2:-41718149 | None:intergenic |
| CCATAAAACTTCATTAAATA+AGG | 0.324325 | 1_2:-41717959 | None:intergenic |
| GAACCAATGCACCAAAATTA+GGG | 0.331625 | 1_2:+41714638 | Msa0070840:CDS |
| GATACTCAAAGAAGCGATTC+AGG | 0.345165 | 1_2:+41715429 | Msa0070840:CDS |
| CAATGACCTGAATCGGGTTC+TGG | 0.354972 | 1_2:-41715580 | None:intergenic |
| AGCTTGACTTCGATCAGGTT+TGG | 0.359219 | 1_2:-41714856 | None:intergenic |
| GGAGCTTGTGGCAGCATCAT+TGG | 0.387470 | 1_2:+41717909 | Msa0070840:three_prime_UTR |
| TGGAACATATGTTGCATGTT+TGG | 0.388336 | 1_2:-41715393 | None:intergenic |
| AGATTACTGATTTGTCTCTT+GGG | 0.391228 | 1_2:+41715351 | Msa0070840:intron |
| GGATCTGAAACGACTGCAAC+AGG | 0.391313 | 1_2:-41714835 | None:intergenic |
| AACTGACCAGAACCCGATTC+AGG | 0.391358 | 1_2:+41715574 | Msa0070840:CDS |
| CTGGAGCTTCGATGACGTTC+AGG | 0.395758 | 1_2:+41714888 | Msa0070840:CDS |
| GCATCAACAATGACCTGAAT+CGG | 0.397413 | 1_2:-41715587 | None:intergenic |
| TAATATGATAATTTGAATGA+TGG | 0.400451 | 1_2:+41718090 | Msa0070840:three_prime_UTR |
| CATTCTCAGCAGCTTCGGTT+TGG | 0.400751 | 1_2:+41714684 | Msa0070840:CDS |
| GGCATATATGAAACATCATT+AGG | 0.428927 | 1_2:-41718128 | None:intergenic |
| GAAAGAAGCTTATGGCAGTT+AGG | 0.436208 | 1_2:+41715516 | Msa0070840:CDS |
| CGTGAAGATGCAACTCGTAT+TGG | 0.440985 | 1_2:+41717540 | Msa0070840:CDS |
| TTGTTGATGCTGTCGTCAAC+AGG | 0.441734 | 1_2:+41715600 | Msa0070840:CDS |
| TTCTCCATTCTCAGCAGCTT+CGG | 0.442188 | 1_2:+41714679 | Msa0070840:CDS |
| AATGTGATAAACCCTAATTT+TGG | 0.442303 | 1_2:-41714649 | None:intergenic |
| GCCATCTATCTTCTAACTAC+TGG | 0.451088 | 1_2:+41717624 | Msa0070840:CDS |
| GAACTTATTAATGCAGCAAA+AGG | 0.453667 | 1_2:+41717702 | Msa0070840:CDS |
| CAAACCGAAGCTGCTGAGAA+TGG | 0.460404 | 1_2:-41714683 | None:intergenic |
| GAACAATGGAAAGAAGCTTA+TGG | 0.464147 | 1_2:+41715508 | Msa0070840:CDS |
| AATTGTCTTAATATTTCTAA+AGG | 0.465228 | 1_2:-41717661 | None:intergenic |
| TGAAGAGCTTGACTTCGATC+AGG | 0.472581 | 1_2:-41714861 | None:intergenic |
| CATATATGCCAAATCATGGT+TGG | 0.480309 | 1_2:+41718141 | Msa0070840:three_prime_UTR |
| GTTGCTAAGGCAAATCGTTA+AGG | 0.480990 | 1_2:+41717888 | Msa0070840:CDS |
| GCAACTCGTATTGGTTCTGC+TGG | 0.481223 | 1_2:+41717549 | Msa0070840:CDS |
| TGCCGCATCCACCACATTCA+CGG | 0.482355 | 1_2:+41714708 | Msa0070840:CDS |
| CAGCAAAAGGATCATCCAAC+AGG | 0.484289 | 1_2:+41717715 | Msa0070840:CDS |
| GATTACTGATTTGTCTCTTG+GGG | 0.496398 | 1_2:+41715352 | Msa0070840:intron |
| AAGTCAAGCTCTTCAACCGC+TGG | 0.503610 | 1_2:+41714869 | Msa0070840:CDS |
| AGCATGAGCTTAAAGTCTGC+TGG | 0.505850 | 1_2:+41718170 | Msa0070840:three_prime_UTR |
| ACCAGTAGTTAGAAGATAGA+TGG | 0.507365 | 1_2:-41717625 | None:intergenic |
| TTGTCTCTTGGGGATTACAT+TGG | 0.513322 | 1_2:+41715362 | Msa0070840:CDS |
| TGAAATTGAAAGAGTTGCTA+AGG | 0.514135 | 1_2:+41717875 | Msa0070840:CDS |
| GGCTTGATTCACACGACGAA+GGG | 0.519901 | 1_2:-41717604 | None:intergenic |
| TGCTGAGAATGGAGAAGGTA+TGG | 0.521267 | 1_2:-41714672 | None:intergenic |
| GTTTCATATATGCCAAATCA+TGG | 0.529242 | 1_2:+41718137 | Msa0070840:three_prime_UTR |
| TGCTGGAGTTGTAAGAAGAC+AGG | 0.532743 | 1_2:+41717566 | Msa0070840:CDS |
| ACATATGTTCCACACACTGC+TGG | 0.537649 | 1_2:+41715404 | Msa0070840:CDS |
| TTAGTGAGCCTCTCAACAAT+GGG | 0.543323 | 1_2:-41715464 | None:intergenic |
| TAGGATCATTAAGCATGCTA+TGG | 0.545010 | 1_2:+41715535 | Msa0070840:CDS |
| CATCAACAATGACCTGAATC+GGG | 0.560268 | 1_2:-41715586 | None:intergenic |
| CTAACTCTCTCATGATGCAT+GGG | 0.561374 | 1_2:+41715483 | Msa0070840:CDS |
| GTTAGTGAGCCTCTCAACAA+TGG | 0.562680 | 1_2:-41715465 | None:intergenic |
| ACTAACTCTCTCATGATGCA+TGG | 0.563337 | 1_2:+41715482 | Msa0070840:CDS |
| ATGATGCATGGGAGGAACAA+TGG | 0.566550 | 1_2:+41715494 | Msa0070840:CDS |
| AGTTGTAAGAAGACAGGCTG+TGG | 0.574582 | 1_2:+41717572 | Msa0070840:CDS |
| AACCGTGAATGTGGTGGATG+CGG | 0.578022 | 1_2:-41714710 | None:intergenic |
| CTCAGTGTCCCATTGTTGAG+AGG | 0.591866 | 1_2:+41715456 | Msa0070840:CDS |
| GCAAATCGTTAAGGAGCTTG+TGG | 0.593014 | 1_2:+41717897 | Msa0070840:exon |
| TTCTTCAATGACATCAGCCA+TGG | 0.596830 | 1_2:-41714812 | None:intergenic |
| GAAGGATGATAATCAAACAC+AGG | 0.617200 | 1_2:-41718059 | None:intergenic |
| GAGTATCTACCAGCAGTGTG+TGG | 0.629824 | 1_2:-41715413 | None:intergenic |
| GAAGCTGCTGAGAATGGAGA+AGG | 0.632325 | 1_2:-41714677 | None:intergenic |
| CAACGATAAAACAAAATCTG+AGG | 0.644709 | 1_2:-41717934 | None:intergenic |
| ACTCTCTCATGATGCATGGG+AGG | 0.648954 | 1_2:+41715486 | Msa0070840:CDS |
| GAACGTCATCGAAGCTCCAG+CGG | 0.655762 | 1_2:-41714885 | None:intergenic |
| TGGCTTGATTCACACGACGA+AGG | 0.656812 | 1_2:-41717605 | None:intergenic |
| TGAACGAACCGTGAATGTGG+TGG | 0.665389 | 1_2:-41714716 | None:intergenic |
| GCTTGATTCACACGACGAAG+GGG | 0.665666 | 1_2:-41717603 | None:intergenic |
| AAATGAACGAACCGTGAATG+TGG | 0.685162 | 1_2:-41714719 | None:intergenic |
| ATACGAGTTGCATCTTCACG+AGG | 0.709806 | 1_2:-41717537 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTAGTTTTATGTTT+AGG | + | chr1_2:41714940-41714959 | Msa0070840:intron | 10.0% |
| !! | AGATATTAAAAAAAAATAAC+TGG | - | chr1_2:41715831-41715850 | None:intergenic | 10.0% |
| !! | AATCATAATTCTATTTATTA+AGG | - | chr1_2:41717163-41717182 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAACAGAAAA+AGG | - | chr1_2:41717395-41717414 | None:intergenic | 10.0% |
| !!! | ATTAATTGGTTTTTTTATTG+TGG | + | chr1_2:41715273-41715292 | Msa0070840:intron | 15.0% |
| !!! | CAATGATTTTTTTTATTTTC+TGG | + | chr1_2:41715703-41715722 | Msa0070840:intron | 15.0% |
| !!! | TAATATTTCTATGATTTTGA+TGG | + | chr1_2:41715976-41715995 | Msa0070840:intron | 15.0% |
| !!! | AATATTTCTATGATTTTGAT+GGG | + | chr1_2:41715977-41715996 | Msa0070840:intron | 15.0% |
| !! | AAAAAAAAAAAACAATAAGC+TGG | - | chr1_2:41716199-41716218 | None:intergenic | 15.0% |
| !! | TTAAAAACTTATTAGAAGTA+TGG | + | chr1_2:41716584-41716603 | Msa0070840:intron | 15.0% |
| !! | AAATAAAAATGAAATGAACT+GGG | - | chr1_2:41716892-41716911 | None:intergenic | 15.0% |
| !! | AAAATAAAAATGAAATGAAC+TGG | - | chr1_2:41716893-41716912 | None:intergenic | 15.0% |
| !! | AATCATAATTCATGAAATAT+AGG | - | chr1_2:41716984-41717003 | None:intergenic | 15.0% |
| !!! | ATGTTTCAAAATTTTGAATT+TGG | + | chr1_2:41717470-41717489 | Msa0070840:intron | 15.0% |
| !!! | AATTGTCTTAATATTTCTAA+AGG | - | chr1_2:41717664-41717683 | None:intergenic | 15.0% |
| !!! | CTTATTTAATGAAGTTTTAT+GGG | + | chr1_2:41717960-41717979 | Msa0070840:three_prime_UTR | 15.0% |
| !!! | TATCATATTATAACTTTTGA+AGG | - | chr1_2:41718080-41718099 | None:intergenic | 15.0% |
| !! | TAATATGATAATTTGAATGA+TGG | + | chr1_2:41718090-41718109 | Msa0070840:three_prime_UTR | 15.0% |
| !!! | TTTTGTTATTCCAGATTATT+TGG | + | chr1_2:41715144-41715163 | Msa0070840:intron | 20.0% |
| !! | AAAAATGTAGTGATTAATGT+TGG | + | chr1_2:41715307-41715326 | Msa0070840:intron | 20.0% |
| !!! | TTTTATTTTCTGGTTTGATA+TGG | + | chr1_2:41715713-41715732 | Msa0070840:intron | 20.0% |
| !! | AAAAAAATAACTGGAATGTT+TGG | - | chr1_2:41715822-41715841 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTCTAGGTTGATA+TGG | + | chr1_2:41716082-41716101 | Msa0070840:intron | 20.0% |
| !! | AATGACTAATGAAAGATAAA+AGG | - | chr1_2:41716284-41716303 | None:intergenic | 20.0% |
| !!! | ATGAATATTTGTTTTCCTAT+TGG | + | chr1_2:41716480-41716499 | Msa0070840:intron | 20.0% |
| !! | CTGTTATAAGAAACATAAAA+AGG | - | chr1_2:41716635-41716654 | None:intergenic | 20.0% |
| !!! | ATGAATAATTTGTTTCCTAT+TGG | + | chr1_2:41716808-41716827 | Msa0070840:intron | 20.0% |
| !! | TTATCTATTTAATTGATCGA+TGG | + | chr1_2:41717187-41717206 | Msa0070840:intron | 20.0% |
| !! | CAAAAGATGAAAAAAATACA+TGG | - | chr1_2:41717779-41717798 | None:intergenic | 20.0% |
| !! | CATTAAGTTACAGAATTAAA+AGG | - | chr1_2:41717811-41717830 | None:intergenic | 20.0% |
| !!! | CTTTTAATTCTGTAACTTAA+TGG | + | chr1_2:41717809-41717828 | Msa0070840:intron | 20.0% |
| !! | CCATAAAACTTCATTAAATA+AGG | - | chr1_2:41717962-41717981 | None:intergenic | 20.0% |
| !!! | CCTTATTTAATGAAGTTTTA+TGG | + | chr1_2:41717959-41717978 | Msa0070840:three_prime_UTR | 20.0% |
| !! | ATAATTTGAATGATGGTTTA+TGG | + | chr1_2:41718097-41718116 | Msa0070840:three_prime_UTR | 20.0% |
| !! | AATGTGATAAACCCTAATTT+TGG | - | chr1_2:41714652-41714671 | None:intergenic | 25.0% |
| !! | TTTGTTGACATTTTTGTAGT+TGG | + | chr1_2:41715017-41715036 | Msa0070840:intron | 25.0% |
| ! | ACATGAAATACCAAATAATC+TGG | - | chr1_2:41715157-41715176 | None:intergenic | 25.0% |
| !!! | ATGAATTTTTGTTTCCCTAT+TGG | + | chr1_2:41715747-41715766 | Msa0070840:intron | 25.0% |
| ! | TTCATTAGTAATGACTGTTA+AGG | + | chr1_2:41715891-41715910 | Msa0070840:intron | 25.0% |
| ! | AGTTATCATAAATAAACGCT+TGG | + | chr1_2:41715949-41715968 | Msa0070840:intron | 25.0% |
| ! | GTTATCATAAATAAACGCTT+GGG | + | chr1_2:41715950-41715969 | Msa0070840:intron | 25.0% |
| !!! | AAAATTTGAGTTTGATAGTG+TGG | + | chr1_2:41716005-41716024 | Msa0070840:intron | 25.0% |
| !!! | AAATTTGAGTTTGATAGTGT+GGG | + | chr1_2:41716006-41716025 | Msa0070840:intron | 25.0% |
| !! | GGTTTGTAATTATTGTGTTT+TGG | + | chr1_2:41716039-41716058 | Msa0070840:intron | 25.0% |
| ! | ATGAATATTTGTTTCCCTAT+TGG | + | chr1_2:41716116-41716135 | Msa0070840:intron | 25.0% |
| ! | CTAAAAAAATTGCATCATTC+TGG | - | chr1_2:41716150-41716169 | None:intergenic | 25.0% |
| ! | ATTAGTCATTACTACTGTTA+AGG | + | chr1_2:41716294-41716313 | Msa0070840:intron | 25.0% |
| ! | GTGAATCATTTGAATTTGTA+TGG | + | chr1_2:41716744-41716763 | Msa0070840:intron | 25.0% |
| ! | TTCATGAATTATGATTATCC+TGG | + | chr1_2:41716988-41717007 | Msa0070840:intron | 25.0% |
| ! | AAATCACAGGTATATACAAA+AGG | - | chr1_2:41717222-41717241 | None:intergenic | 25.0% |
| !! | CACATTAACATTTTAGACAA+TGG | - | chr1_2:41717302-41717321 | None:intergenic | 25.0% |
| !! | CATTGTCTAAAATGTTAATG+TGG | + | chr1_2:41717300-41717319 | Msa0070840:intron | 25.0% |
| ! | TAATTAGGATGTTTCCAAAA+GGG | + | chr1_2:41717328-41717347 | Msa0070840:intron | 25.0% |
| !!! | AATGATGGTTTATGGTTTTT+TGG | + | chr1_2:41718105-41718124 | Msa0070840:three_prime_UTR | 25.0% |
| AGAAACAATGGATACAGAAA+AGG | - | chr1_2:41714770-41714789 | None:intergenic | 30.0% | |
| AAACGAAGAATGAGAAACAA+TGG | - | chr1_2:41714782-41714801 | None:intergenic | 30.0% | |
| !! | AGATTACTGATTTGTCTCTT+GGG | + | chr1_2:41715351-41715370 | Msa0070840:intron | 30.0% |
| ! | TATGAATTGTGGATTGTTGA+TGG | + | chr1_2:41715623-41715642 | Msa0070840:intron | 30.0% |
| !!! | TATTTTCTGGTTTGATATGG+AGG | + | chr1_2:41715716-41715735 | Msa0070840:intron | 30.0% |
| AAACAATAAGCTGGAATGAT+GGG | - | chr1_2:41716190-41716209 | None:intergenic | 30.0% | |
| AAAACAATAAGCTGGAATGA+TGG | - | chr1_2:41716191-41716210 | None:intergenic | 30.0% | |
| !! | TGTTTGTGTATTTGTTGTGA+TGG | + | chr1_2:41716436-41716455 | Msa0070840:intron | 30.0% |
| AATACATAATGCCATCATTC+TGG | - | chr1_2:41716514-41716533 | None:intergenic | 30.0% | |
| ACACGTGTTTGGTAAAAAAA+GGG | - | chr1_2:41716726-41716745 | None:intergenic | 30.0% | |
| ! | ATGATTGGTTATTTCCCTAT+TGG | + | chr1_2:41717086-41717105 | Msa0070840:intron | 30.0% |
| AATGGCATATTTAAGCAACA+AGG | - | chr1_2:41717253-41717272 | None:intergenic | 30.0% | |
| ! | ATGCCATTGTTTACATTTTG+AGG | + | chr1_2:41717265-41717284 | Msa0070840:intron | 30.0% |
| CAACCTCAAAATGTAAACAA+TGG | - | chr1_2:41717271-41717290 | None:intergenic | 30.0% | |
| GTTAATGTGGACTTGTAATT+AGG | + | chr1_2:41717313-41717332 | Msa0070840:intron | 30.0% | |
| GTAATTAGGATGTTTCCAAA+AGG | + | chr1_2:41717327-41717346 | Msa0070840:intron | 30.0% | |
| ! | AATCTTGAACAAAACCCTTT+TGG | - | chr1_2:41717345-41717364 | None:intergenic | 30.0% |
| CTACTAACAAGAACAGAAAA+AGG | - | chr1_2:41717431-41717450 | None:intergenic | 30.0% | |
| GAACTTATTAATGCAGCAAA+AGG | + | chr1_2:41717702-41717721 | Msa0070840:CDS | 30.0% | |
| ! | ATTTGAAAAAGCATACCTGT+TGG | - | chr1_2:41717733-41717752 | None:intergenic | 30.0% |
| TGAAATTGAAAGAGTTGCTA+AGG | + | chr1_2:41717875-41717894 | Msa0070840:CDS | 30.0% | |
| CAACGATAAAACAAAATCTG+AGG | - | chr1_2:41717937-41717956 | None:intergenic | 30.0% | |
| TGTACTCAAGCAAAAAATCT+AGG | - | chr1_2:41717995-41718014 | None:intergenic | 30.0% | |
| GGCATATATGAAACATCATT+AGG | - | chr1_2:41718131-41718150 | None:intergenic | 30.0% | |
| GTTTCATATATGCCAAATCA+TGG | + | chr1_2:41718137-41718156 | Msa0070840:three_prime_UTR | 30.0% | |
| CTTTATAACCAACCATGATT+TGG | - | chr1_2:41718152-41718171 | None:intergenic | 30.0% | |
| TGAACCAATGCACCAAAATT+AGG | + | chr1_2:41714637-41714656 | Msa0070840:CDS | 35.0% | |
| GAACCAATGCACCAAAATTA+GGG | + | chr1_2:41714638-41714657 | Msa0070840:CDS | 35.0% | |
| !! | AAACCCTAATTTTGGTGCAT+TGG | - | chr1_2:41714644-41714663 | None:intergenic | 35.0% |
| !! | CAGATTACTGATTTGTCTCT+TGG | + | chr1_2:41715350-41715369 | Msa0070840:intron | 35.0% |
| !! | GATTACTGATTTGTCTCTTG+GGG | + | chr1_2:41715352-41715371 | Msa0070840:intron | 35.0% |
| TGGAACATATGTTGCATGTT+TGG | - | chr1_2:41715396-41715415 | None:intergenic | 35.0% | |
| GAACAATGGAAAGAAGCTTA+TGG | + | chr1_2:41715508-41715527 | Msa0070840:CDS | 35.0% | |
| TAGGATCATTAAGCATGCTA+TGG | + | chr1_2:41715535-41715554 | Msa0070840:CDS | 35.0% | |
| TAACTGGAATGTTTGGAGAA+TGG | - | chr1_2:41715815-41715834 | None:intergenic | 35.0% | |
| !! | TTCTAGGTTGATATGGAGAA+TGG | + | chr1_2:41716089-41716108 | Msa0070840:intron | 35.0% |
| ATTCTGGCAATCAAACCAAT+AGG | - | chr1_2:41716498-41716517 | None:intergenic | 35.0% | |
| CACGTGTTTGGTAAAAAAAG+GGG | - | chr1_2:41716725-41716744 | None:intergenic | 35.0% | |
| CACACGTGTTTGGTAAAAAA+AGG | - | chr1_2:41716727-41716746 | None:intergenic | 35.0% | |
| TCAAATGATTCACACGTGTT+TGG | - | chr1_2:41716737-41716756 | None:intergenic | 35.0% | |
| TCAGAGAATGACATGATGAT+TGG | + | chr1_2:41717071-41717090 | Msa0070840:intron | 35.0% | |
| TCAAGGCAATCAAACCAATA+GGG | - | chr1_2:41717103-41717122 | None:intergenic | 35.0% | |
| ATCAAGGCAATCAAACCAAT+AGG | - | chr1_2:41717104-41717123 | None:intergenic | 35.0% | |
| ATACATAAGTGCCATCATCA+AGG | - | chr1_2:41717120-41717139 | None:intergenic | 35.0% | |
| ACCAGTAGTTAGAAGATAGA+TGG | - | chr1_2:41717628-41717647 | None:intergenic | 35.0% | |
| GAAGGATGATAATCAAACAC+AGG | - | chr1_2:41718062-41718081 | None:intergenic | 35.0% | |
| CATATATGCCAAATCATGGT+TGG | + | chr1_2:41718141-41718160 | Msa0070840:three_prime_UTR | 35.0% | |
| AAATGAACGAACCGTGAATG+TGG | - | chr1_2:41714722-41714741 | None:intergenic | 40.0% | |
| CGAAGATTCGAAGAAACTGA+AGG | - | chr1_2:41714745-41714764 | None:intergenic | 40.0% | |
| TTCTTCAATGACATCAGCCA+TGG | - | chr1_2:41714815-41714834 | None:intergenic | 40.0% | |
| TTGTCTCTTGGGGATTACAT+TGG | + | chr1_2:41715362-41715381 | Msa0070840:CDS | 40.0% | |
| GATACTCAAAGAAGCGATTC+AGG | + | chr1_2:41715429-41715448 | Msa0070840:CDS | 40.0% | |
| TTAGTGAGCCTCTCAACAAT+GGG | - | chr1_2:41715467-41715486 | None:intergenic | 40.0% | |
| ACTAACTCTCTCATGATGCA+TGG | + | chr1_2:41715482-41715501 | Msa0070840:CDS | 40.0% | |
| CTAACTCTCTCATGATGCAT+GGG | + | chr1_2:41715483-41715502 | Msa0070840:CDS | 40.0% | |
| GAAAGAAGCTTATGGCAGTT+AGG | + | chr1_2:41715516-41715535 | Msa0070840:CDS | 40.0% | |
| CATCAACAATGACCTGAATC+GGG | - | chr1_2:41715589-41715608 | None:intergenic | 40.0% | |
| GCATCAACAATGACCTGAAT+CGG | - | chr1_2:41715590-41715609 | None:intergenic | 40.0% | |
| TCGTCAACAGGTATGAATTG+TGG | + | chr1_2:41715612-41715631 | Msa0070840:intron | 40.0% | |
| !! | TTCTGGTTTGATATGGAGGA+TGG | + | chr1_2:41715720-41715739 | Msa0070840:intron | 40.0% |
| CTCTTGCAGTCAAACCAATA+GGG | - | chr1_2:41715764-41715783 | None:intergenic | 40.0% | |
| ACTCTTGCAGTCAAACCAAT+AGG | - | chr1_2:41715765-41715784 | None:intergenic | 40.0% | |
| GATAGTGTGGGATTTGTCTT+AGG | + | chr1_2:41716018-41716037 | Msa0070840:intron | 40.0% | |
| TTCTGGCAGTCAAACCAATA+GGG | - | chr1_2:41716133-41716152 | None:intergenic | 40.0% | |
| ATTCTGGCAGTCAAACCAAT+AGG | - | chr1_2:41716134-41716153 | None:intergenic | 40.0% | |
| !! | GTGTATTTGTTGTGATGGCT+TGG | + | chr1_2:41716441-41716460 | Msa0070840:intron | 40.0% |
| TGGTTTGATTGCCAGAATGA+TGG | + | chr1_2:41716500-41716519 | Msa0070840:intron | 40.0% | |
| GACCATTCTCTTAACATTCG+AGG | + | chr1_2:41716544-41716563 | Msa0070840:intron | 40.0% | |
| GACCTCGAATGTTAAGAGAA+TGG | - | chr1_2:41716549-41716568 | None:intergenic | 40.0% | |
| !! | TGGTGTCATTATTTACTCGC+TGG | + | chr1_2:41716764-41716783 | Msa0070840:intron | 40.0% |
| ! | ATTCTGGCTGTCAAACCAAT+AGG | - | chr1_2:41716826-41716845 | None:intergenic | 40.0% |
| AATACAAGCTGCCATCATTC+TGG | - | chr1_2:41716842-41716861 | None:intergenic | 40.0% | |
| GAACTGGGAGATAAGACAAA+TGG | - | chr1_2:41716877-41716896 | None:intergenic | 40.0% | |
| AAAATCGAATCACAACAGCC+AGG | - | chr1_2:41717009-41717028 | None:intergenic | 40.0% | |
| TGGTTTGATTGCCTTGATGA+TGG | + | chr1_2:41717106-41717125 | Msa0070840:intron | 40.0% | |
| CAAGGCAAACAACAAATCAC+AGG | - | chr1_2:41717235-41717254 | None:intergenic | 40.0% | |
| ! | CACTTCTGTCATTTGTACAG+TGG | + | chr1_2:41717513-41717532 | Msa0070840:intron | 40.0% |
| GCCATCTATCTTCTAACTAC+TGG | + | chr1_2:41717624-41717643 | Msa0070840:CDS | 40.0% | |
| GTTGCTAAGGCAAATCGTTA+AGG | + | chr1_2:41717888-41717907 | Msa0070840:CDS | 40.0% | |
| TGCTGAGAATGGAGAAGGTA+TGG | - | chr1_2:41714675-41714694 | None:intergenic | 45.0% | |
| TTCTCCATTCTCAGCAGCTT+CGG | + | chr1_2:41714679-41714698 | Msa0070840:CDS | 45.0% | |
| TTCGTTTCTCTATGCAGCCA+TGG | + | chr1_2:41714795-41714814 | Msa0070840:intron | 45.0% | |
| AGCTTGACTTCGATCAGGTT+TGG | - | chr1_2:41714859-41714878 | None:intergenic | 45.0% | |
| TGAAGAGCTTGACTTCGATC+AGG | - | chr1_2:41714864-41714883 | None:intergenic | 45.0% | |
| ACATATGTTCCACACACTGC+TGG | + | chr1_2:41715404-41715423 | Msa0070840:CDS | 45.0% | |
| GTTAGTGAGCCTCTCAACAA+TGG | - | chr1_2:41715468-41715487 | None:intergenic | 45.0% | |
| ATGATGCATGGGAGGAACAA+TGG | + | chr1_2:41715494-41715513 | Msa0070840:CDS | 45.0% | |
| TTGTTGATGCTGTCGTCAAC+AGG | + | chr1_2:41715600-41715619 | Msa0070840:CDS | 45.0% | |
| ! | AAGCTGGAATGATGGGAGAA+TGG | - | chr1_2:41716183-41716202 | None:intergenic | 45.0% |
| ! | TTTGTTGTGATGGCTTGGAC+TGG | + | chr1_2:41716446-41716465 | Msa0070840:intron | 45.0% |
| !! | CGCTGGCTTGATTTGAAAGA+TGG | + | chr1_2:41716781-41716800 | Msa0070840:intron | 45.0% |
| TGGTTTGACAGCCAGAATGA+TGG | + | chr1_2:41716828-41716847 | Msa0070840:intron | 45.0% | |
| ATACGAGTTGCATCTTCACG+AGG | - | chr1_2:41717540-41717559 | None:intergenic | 45.0% | |
| CGTGAAGATGCAACTCGTAT+TGG | + | chr1_2:41717540-41717559 | Msa0070840:CDS | 45.0% | |
| TGCTGGAGTTGTAAGAAGAC+AGG | + | chr1_2:41717566-41717585 | Msa0070840:CDS | 45.0% | |
| AGTTGTAAGAAGACAGGCTG+TGG | + | chr1_2:41717572-41717591 | Msa0070840:CDS | 45.0% | |
| CAGCAAAAGGATCATCCAAC+AGG | + | chr1_2:41717715-41717734 | Msa0070840:CDS | 45.0% | |
| GCAAATCGTTAAGGAGCTTG+TGG | + | chr1_2:41717897-41717916 | Msa0070840:exon | 45.0% | |
| !! | AAAAAATTATTTCAATTAAT+TGG | + | chr1_2:41715259-41715278 | Msa0070840:intron | 5.0% |
| !!! | TTTTATATAATTTTTTTTCT+AGG | + | chr1_2:41716073-41716092 | Msa0070840:intron | 5.0% |
| GAAGCTGCTGAGAATGGAGA+AGG | - | chr1_2:41714680-41714699 | None:intergenic | 50.0% | |
| CAAACCGAAGCTGCTGAGAA+TGG | - | chr1_2:41714686-41714705 | None:intergenic | 50.0% | |
| CATTCTCAGCAGCTTCGGTT+TGG | + | chr1_2:41714684-41714703 | Msa0070840:CDS | 50.0% | |
| !! | AACCGTGAATGTGGTGGATG+CGG | - | chr1_2:41714713-41714732 | None:intergenic | 50.0% |
| TGAACGAACCGTGAATGTGG+TGG | - | chr1_2:41714719-41714738 | None:intergenic | 50.0% | |
| ! | GGATCTGAAACGACTGCAAC+AGG | - | chr1_2:41714838-41714857 | None:intergenic | 50.0% |
| AAGTCAAGCTCTTCAACCGC+TGG | + | chr1_2:41714869-41714888 | Msa0070840:CDS | 50.0% | |
| GAGTATCTACCAGCAGTGTG+TGG | - | chr1_2:41715416-41715435 | None:intergenic | 50.0% | |
| CTCAGTGTCCCATTGTTGAG+AGG | + | chr1_2:41715456-41715475 | Msa0070840:CDS | 50.0% | |
| ACTCTCTCATGATGCATGGG+AGG | + | chr1_2:41715486-41715505 | Msa0070840:CDS | 50.0% | |
| AACTGACCAGAACCCGATTC+AGG | + | chr1_2:41715574-41715593 | Msa0070840:CDS | 50.0% | |
| CAATGACCTGAATCGGGTTC+TGG | - | chr1_2:41715583-41715602 | None:intergenic | 50.0% | |
| ! | TGATGGCTTGGACTGGAGAA+TGG | + | chr1_2:41716453-41716472 | Msa0070840:intron | 50.0% |
| !! | GCAACTCGTATTGGTTCTGC+TGG | + | chr1_2:41717549-41717568 | Msa0070840:CDS | 50.0% |
| GCTTGATTCACACGACGAAG+GGG | - | chr1_2:41717606-41717625 | None:intergenic | 50.0% | |
| GGCTTGATTCACACGACGAA+GGG | - | chr1_2:41717607-41717626 | None:intergenic | 50.0% | |
| TGGCTTGATTCACACGACGA+AGG | - | chr1_2:41717608-41717627 | None:intergenic | 50.0% | |
| TGCCGCATCCACCACATTCA+CGG | + | chr1_2:41714708-41714727 | Msa0070840:CDS | 55.0% | |
| GAACGTCATCGAAGCTCCAG+CGG | - | chr1_2:41714888-41714907 | None:intergenic | 55.0% | |
| CTGGAGCTTCGATGACGTTC+AGG | + | chr1_2:41714888-41714907 | Msa0070840:CDS | 55.0% | |
| GGAGCTTGTGGCAGCATCAT+TGG | + | chr1_2:41717909-41717928 | Msa0070840:three_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 41714636 | 41718189 | 41714636 | ID=Msa0070840;Name=Msa0070840 |
| chr1_2 | mRNA | 41714636 | 41718189 | 41714636 | ID=Msa0070840-mRNA-1;Parent=Msa0070840;Name=Msa0070840-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|0.8|1|0.75|0.6|5|281|239 |
| chr1_2 | exon | 41714636 | 41714729 | 41714636 | ID=Msa0070840-mRNA-1:exon:12776;Parent=Msa0070840-mRNA-1 |
| chr1_2 | exon | 41714812 | 41714909 | 41714812 | ID=Msa0070840-mRNA-1:exon:12777;Parent=Msa0070840-mRNA-1 |
| chr1_2 | exon | 41715353 | 41715621 | 41715353 | ID=Msa0070840-mRNA-1:exon:12778;Parent=Msa0070840-mRNA-1 |
| chr1_2 | exon | 41717533 | 41717736 | 41717533 | ID=Msa0070840-mRNA-1:exon:12779;Parent=Msa0070840-mRNA-1 |
| chr1_2 | exon | 41717854 | 41718189 | 41717854 | ID=Msa0070840-mRNA-1:exon:12780;Parent=Msa0070840-mRNA-1 |
| chr1_2 | CDS | 41714636 | 41714729 | 41714636 | ID=Msa0070840-mRNA-1:cds;Parent=Msa0070840-mRNA-1 |
| chr1_2 | CDS | 41714812 | 41714909 | 41714812 | ID=Msa0070840-mRNA-1:cds;Parent=Msa0070840-mRNA-1 |
| chr1_2 | CDS | 41715353 | 41715621 | 41715353 | ID=Msa0070840-mRNA-1:cds;Parent=Msa0070840-mRNA-1 |
| chr1_2 | CDS | 41717533 | 41717736 | 41717533 | ID=Msa0070840-mRNA-1:cds;Parent=Msa0070840-mRNA-1 |
| chr1_2 | CDS | 41717854 | 41717908 | 41717854 | ID=Msa0070840-mRNA-1:cds;Parent=Msa0070840-mRNA-1 |
| chr1_2 | three_prime_UTR | 41717909 | 41718189 | 41717909 | ID=Msa0070840-mRNA-1:three_prime_utr;Parent=Msa0070840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
