AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0641110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641110 MtrunA17_Chr8g0348081 93.976 166 10 0 151 316 8 173 4.70e-113 332
Msa0641110 MtrunA17_Chr8g0336851 83.735 166 27 0 151 316 8 173 1.64e-99 297
Msa0641110 MtrunA17_Chr8g0336791 83.735 166 26 1 152 316 9 174 7.19e-99 289
Msa0641110 MtrunA17_Chr8g0336761 82.530 166 29 0 151 316 8 173 9.14e-99 295
Msa0641110 MtrunA17_Chr8g0336631 81.437 167 30 1 151 316 8 174 3.09e-98 294
Msa0641110 MtrunA17_Chr8g0336831 83.133 166 27 1 152 316 9 174 4.98e-97 286
Msa0641110 MtrunA17_Chr8g0336781 79.429 175 35 1 143 316 35 209 2.08e-96 290
Msa0641110 MtrunA17_Chr8g0336861 80.838 167 31 1 151 316 8 174 2.98e-92 278
Msa0641110 MtrunA17_Chr4g0066121 73.653 167 43 1 151 316 8 174 1.59e-86 264
Msa0641110 MtrunA17_Chr2g0311761 68.519 162 47 2 158 316 20 180 1.27e-73 231
Msa0641110 MtrunA17_Chr4g0025621 80.690 145 27 1 5 149 34 177 7.02e-73 229
Msa0641110 MtrunA17_Chr2g0311831 64.815 162 53 2 158 316 20 180 2.64e-70 223
Msa0641110 MtrunA17_Chr2g0311921 62.346 162 57 2 158 316 6 166 8.05e-68 216
Msa0641110 MtrunA17_Chr8g0336751 57.143 161 65 2 159 316 47 206 1.49e-59 196
Msa0641110 MtrunA17_Chr4g0025661 60.123 163 56 2 5 159 37 198 1.41e-58 192
Msa0641110 MtrunA17_Chr2g0311861 58.642 162 43 3 158 316 16 156 5.72e-58 190
Msa0641110 MtrunA17_Chr1g0167951 56.774 155 64 3 162 315 11 163 4.40e-57 188
Msa0641110 MtrunA17_Chr1g0167911 54.037 161 70 3 158 316 7 165 1.78e-55 184
Msa0641110 MtrunA17_Chr1g0168001 51.497 167 71 4 158 316 7 171 3.72e-54 174
Msa0641110 MtrunA17_Chr1g0167961 53.086 162 71 4 158 316 22 181 3.32e-52 176
Msa0641110 MtrunA17_Chr8g0354241 49.693 163 74 3 160 316 22 182 4.86e-46 160
Msa0641110 MtrunA17_Chr8g0354261 48.466 163 76 3 160 316 22 182 4.54e-45 157
Msa0641110 MtrunA17_Chr1g0187821 43.558 163 85 3 160 316 18 179 8.21e-45 156
Msa0641110 MtrunA17_Chr1g0187811 45.349 172 78 4 158 316 132 300 3.11e-43 155
Msa0641110 MtrunA17_Chr7g0235951 39.086 197 95 4 124 316 4 179 1.50e-42 150
Msa0641110 MtrunA17_Chr8g0335411 43.478 161 84 3 160 316 22 179 3.52e-42 149
Msa0641110 MtrunA17_Chr8g0364161 40.854 164 84 3 159 315 21 178 6.83e-41 140
Msa0641110 MtrunA17_Chr1g0187831 43.114 167 82 4 160 316 19 182 7.32e-41 146
Msa0641110 MtrunA17_Chr4g0011311 42.405 158 88 3 160 315 22 178 2.86e-40 143
Msa0641110 MtrunA17_Chr7g0247991 42.236 161 86 3 160 316 22 179 5.78e-40 144
Msa0641110 MtrunA17_Chr8g0364471 40.462 173 95 4 145 315 12 178 1.14e-39 143
Msa0641110 MtrunA17_Chr2g0311711 42.593 162 88 3 159 316 19 179 1.22e-39 142
Msa0641110 MtrunA17_Chr2g0311701 41.358 162 90 3 159 316 21 181 1.47e-38 140
Msa0641110 MtrunA17_Chr6g0472861 43.860 171 80 3 158 316 15 181 3.13e-38 139
Msa0641110 MtrunA17_Chr4g0055591 41.975 162 78 3 162 316 16 168 6.15e-38 138
Msa0641110 MtrunA17_Chr2g0311681 40.741 162 91 3 159 316 15 175 9.11e-37 135
Msa0641110 MtrunA17_Chr7g0225881 40.964 166 87 2 158 316 15 176 1.14e-36 135
Msa0641110 MtrunA17_Chr7g0236011 39.752 161 90 3 160 316 22 179 4.43e-36 133
Msa0641110 MtrunA17_Chr2g0311691 41.358 162 90 3 159 316 15 175 4.60e-36 133
Msa0641110 MtrunA17_Chr4g0066991 39.752 161 70 4 160 316 22 159 1.00e-33 126
Msa0641110 MtrunA17_Chr7g0266651 37.821 156 96 1 162 316 15 170 1.86e-33 126
Msa0641110 MtrunA17_Chr8g0362741 39.744 156 77 4 160 313 22 162 2.70e-31 118
Msa0641110 MtrunA17_Chr1g0184241 38.217 157 97 0 160 316 23 179 1.22e-30 118
Msa0641110 MtrunA17_Chr2g0311751 43.697 119 66 1 198 316 22 139 1.41e-29 110
Msa0641110 MtrunA17_Chr2g0311741 44.538 119 65 1 198 316 22 139 7.56e-29 113
Msa0641110 MtrunA17_Chr1g0167931 39.130 161 56 3 158 316 7 127 1.82e-28 112
Msa0641110 MtrunA17_Chr1g0161041 36.478 159 93 2 162 316 51 205 8.15e-27 108
Msa0641110 MtrunA17_Chr1g0161081 35.849 159 94 2 162 316 28 182 1.38e-26 107
Msa0641110 MtrunA17_Chr1g0161111 35.220 159 95 2 162 316 87 241 1.73e-25 105
Msa0641110 MtrunA17_Chr7g0235991 36.765 136 79 3 185 316 1 133 2.73e-24 97.8
Msa0641110 MtrunA17_Chr7g0235981 32.484 157 73 4 160 315 8 132 7.04e-20 88.6
Msa0641110 MtrunA17_Chr7g0242551 29.936 157 102 3 157 306 1 156 2.66e-17 81.6
Msa0641110 MtrunA17_Chr8g0375571 33.566 143 91 3 170 309 10 151 1.23e-15 76.6
Msa0641110 MtrunA17_Chr2g0311641 33.094 139 86 4 170 305 21 155 1.89e-15 72.8
Msa0641110 MtrunA17_Chr2g0311621 39.796 98 55 2 170 266 21 115 2.48e-15 71.2
Msa0641110 MtrunA17_Chr3g0126741 32.143 140 91 2 178 313 31 170 1.17e-14 73.9
Msa0641110 MtrunA17_Chr5g0426891 27.211 147 104 2 170 313 3 149 1.61e-14 73.2
Msa0641110 MtrunA17_Chr2g0311631 33.094 139 86 4 170 305 21 155 3.08e-14 72.4
Msa0641110 MtrunA17_Chr8g0375591 39.437 71 43 0 203 273 46 116 5.07e-13 65.1
Msa0641110 MtrunA17_Chr3g0093741 32.468 154 90 4 170 316 17 163 1.49e-12 67.4
Msa0641110 MtrunA17_Chr3g0113641 25.166 151 109 2 157 304 1 150 1.72e-12 67.4
Msa0641110 MtrunA17_Chr8g0345831 30.172 116 77 2 189 304 29 140 2.44e-12 66.6
Msa0641110 MtrunA17_Chr3g0128001 32.353 102 63 1 203 304 38 133 3.23e-12 66.2
Msa0641110 MtrunA17_Chr5g0412671 37.931 87 51 2 187 273 24 107 5.53e-12 65.9
Msa0641110 MtrunA17_Chr3g0093751 31.169 154 92 4 170 316 17 163 6.26e-12 65.5
Msa0641110 MtrunA17_Chr4g0006371 30.833 120 77 3 186 304 48 162 6.79e-12 65.5
Msa0641110 MtrunA17_Chr5g0412651 36.458 96 57 3 187 281 24 116 1.03e-11 65.1
Msa0641110 MtrunA17_Chr8g0375661 28.859 149 98 5 170 313 17 162 1.26e-11 62.4
Msa0641110 MtrunA17_Chr5g0423201 26.974 152 95 3 170 309 12 159 2.86e-11 63.5
Msa0641110 MtrunA17_Chr1g0179801 30.128 156 94 5 170 314 26 177 2.95e-11 63.5
Msa0641110 MtrunA17_Chr8g0375641 29.496 139 91 4 170 304 17 152 3.60e-11 61.2
Msa0641110 MtrunA17_Chr5g0421101 31.579 152 85 6 171 309 13 158 6.51e-11 62.4
Msa0641110 MtrunA17_Chr8g0375671 29.710 138 90 4 171 304 18 152 6.97e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641110 AT1G06640.3 51.412 177 79 3 146 316 2 177 2.02e-56 184
Msa0641110 AT1G06640.2 51.412 177 79 3 146 316 2 177 3.57e-56 185
Msa0641110 AT1G06640.1 51.412 177 79 3 146 316 2 177 7.60e-56 185
Msa0641110 AT5G59540.2 53.988 163 68 4 160 316 14 175 1.10e-54 180
Msa0641110 AT5G59540.1 53.988 163 68 4 160 316 14 175 3.73e-54 181
Msa0641110 AT1G06650.1 49.718 177 82 3 146 316 2 177 7.01e-54 179
Msa0641110 AT1G06650.2 49.718 177 82 3 146 316 2 177 2.31e-53 179
Msa0641110 AT1G06620.2 50.000 158 75 2 162 316 18 174 1.29e-51 172
Msa0641110 AT1G06620.1 50.000 158 75 2 162 316 18 174 1.04e-50 172
Msa0641110 AT1G04350.1 49.693 163 73 3 159 316 10 168 6.27e-50 170
Msa0641110 AT1G06645.1 48.876 178 84 3 134 305 3 179 9.92e-50 170
Msa0641110 AT2G30840.2 46.626 163 82 2 159 316 9 171 9.67e-49 165
Msa0641110 AT2G30840.3 46.626 163 82 2 159 316 9 171 2.39e-48 166
Msa0641110 AT2G30840.1 46.626 163 82 2 159 316 9 171 2.50e-48 166
Msa0641110 AT5G22140.1 70.085 117 35 0 5 121 42 158 3.81e-48 165
Msa0641110 AT2G30830.1 48.428 159 81 1 159 316 9 167 9.84e-48 164
Msa0641110 AT3G44190.1 65.812 117 40 0 5 121 42 158 1.93e-47 163
Msa0641110 AT5G59530.1 51.220 164 70 6 160 316 13 173 1.61e-46 161
Msa0641110 AT5G43440.2 47.904 167 76 4 158 316 11 174 1.08e-45 157
Msa0641110 AT1G03410.2 46.951 164 80 3 159 316 8 170 2.33e-45 158
Msa0641110 AT1G03410.1 46.951 164 80 3 159 316 45 207 4.40e-45 158
Msa0641110 AT3G61400.2 45.238 168 81 3 158 316 12 177 5.68e-45 155
Msa0641110 AT5G43440.1 47.904 167 76 4 158 316 11 174 6.31e-45 157
Msa0641110 AT2G25450.1 46.875 160 82 2 159 316 9 167 1.12e-44 156
Msa0641110 AT3G61400.1 45.238 168 81 3 158 316 12 177 1.43e-44 156
Msa0641110 AT5G43450.2 43.114 167 81 3 158 316 11 171 2.33e-44 153
Msa0641110 AT5G43450.1 43.114 167 81 3 158 316 11 171 8.60e-44 154
Msa0641110 AT5G22140.2 69.231 104 32 0 18 121 1 104 6.80e-40 142
Msa0641110 AT3G44190.2 64.423 104 37 0 18 121 1 104 2.00e-39 141
Msa0641110 AT1G04380.2 42.767 159 73 3 159 316 13 154 6.79e-39 138
Msa0641110 AT1G03400.1 44.512 164 74 4 159 316 8 160 1.27e-38 140
Msa0641110 AT1G04380.1 42.767 159 73 3 159 316 13 154 2.65e-38 139
Msa0641110 AT1G03400.2 44.512 164 74 4 159 316 8 160 3.64e-38 139
Msa0641110 AT3G13610.1 30.263 152 94 4 170 316 26 170 6.91e-16 77.8
Msa0641110 AT3G12900.1 30.872 149 99 3 170 316 21 167 1.02e-15 77.4
Msa0641110 AT1G55290.1 30.065 153 94 4 170 316 25 170 1.64e-15 76.6
Msa0641110 AT2G36690.2 28.966 145 92 3 168 304 18 159 1.05e-11 65.5
Msa0641110 AT2G36690.1 28.966 145 92 3 168 304 18 159 1.05e-11 65.5
Msa0641110 AT4G10500.1 29.412 102 69 1 203 304 44 142 1.12e-11 65.1
Msa0641110 AT2G44800.1 26.897 145 100 3 164 304 9 151 4.91e-11 63.5
Msa0641110 AT3G19010.2 31.933 119 71 3 198 311 23 136 4.99e-11 62.8
Msa0641110 AT3G19010.3 31.933 119 71 3 198 311 23 136 5.89e-11 62.8
Msa0641110 AT3G19010.1 31.933 119 71 3 198 311 23 136 6.87e-11 62.8
Msa0641110 AT3G19010.4 31.933 119 71 3 198 311 23 136 6.87e-11 62.8

Find 62 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCCTTTCGGTCCTTGTTT+TGG 0.216405 4_3:+40915064 None:intergenic
ATAGCTCACCAGCACTTAAT+TGG 0.240215 4_3:-40913265 Msa0641110:CDS
GAAACAAAAGCTGGTGTAAA+AGG 0.285364 4_3:-40913629 Msa0641110:CDS
TCTTCTGGTTTGGGAGTATC+AGG 0.295482 4_3:+40913215 None:intergenic
ATCAGGTTGATGATGGAATA+AGG 0.321050 4_3:+40913574 None:intergenic
ATTGCTTACCTCCTTTATAT+TGG 0.323899 4_3:+40915039 None:intergenic
TAGGCTAACTCATATTTATC+AGG 0.330157 4_3:+40913557 None:intergenic
TTTATATTGGTCAAGCCTTT+CGG 0.357179 4_3:+40915052 None:intergenic
AATAACATGGCTTGTGTTGT+AGG 0.361872 4_3:+40913538 None:intergenic
TTTAGATTCAGTTATGTTGA+TGG 0.363769 4_3:+40915160 None:intergenic
TACAGGAATATCTTCTGGTT+TGG 0.364821 4_3:+40913205 None:intergenic
ACAGGAATATCTTCTGGTTT+GGG 0.374059 4_3:+40913206 None:intergenic
GATTATCTTGTTATCGCAAC+TGG 0.394119 4_3:-40915104 Msa0641110:CDS
CATACTACAGGAATATCTTC+TGG 0.395763 4_3:+40913200 None:intergenic
CATATTTATCAGGTTGATGA+TGG 0.411678 4_3:+40913567 None:intergenic
GAAAGGCTTGACCAATATAA+AGG 0.423605 4_3:-40915050 Msa0641110:CDS
AAGATTTGTATACTAGAGAT+AGG 0.424171 4_3:-40913325 Msa0641110:CDS
TCATTTGATTTCCATGGATA+GGG 0.451848 4_3:+40913710 None:intergenic
TGCGATAACAAGATAATCAT+AGG 0.464087 4_3:+40915109 None:intergenic
TTCAATATACAATCAAGGTT+AGG 0.476810 4_3:+40913671 None:intergenic
CATAGAGAATATTTCACAAA+AGG 0.477184 4_3:-40915203 Msa0641110:CDS
GTTCATTCAATATACAATCA+AGG 0.482818 4_3:+40913666 None:intergenic
CTTTGTTATCAATATCTACA+AGG 0.488771 4_3:+40913504 None:intergenic
GGTTGATGATGGAATAAGGT+AGG 0.489286 4_3:+40913578 None:intergenic
AGTTGAAAGATGGTGTTAAG+TGG 0.492237 4_3:-40913376 Msa0641110:CDS
TTCATTTGATTTCCATGGAT+AGG 0.504169 4_3:+40913709 None:intergenic
ATTGTCGGTGGAGGTCCAAC+TGG 0.506007 4_3:-40914334 Msa0641110:CDS
ACTGTCCTTTCTGCGGAGGA+TGG 0.508881 4_3:+40915233 None:intergenic
AACTCCTCAAGAACACTCAA+AGG 0.516232 4_3:+40913395 None:intergenic
GGTGTAAAAGGACTTGTTGA+TGG 0.518526 4_3:-40913617 Msa0641110:CDS
GGCAAATTTGAGAGCAATGG+TGG 0.523139 4_3:-40915258 Msa0641110:CDS
ACTCCTCAAGAACACTCAAA+GGG 0.527377 4_3:+40913396 None:intergenic
TAAAGGAAGCATGTGAAACA+TGG 0.530210 4_3:-40913448 Msa0641110:CDS
GTATCCCTCCAATTAAGTGC+TGG 0.539300 4_3:+40913257 None:intergenic
AAGATATTCCTGTAGTATGC+AGG 0.540298 4_3:-40913196 None:intergenic
TCTAAAGTCTTCACTGCTGA+TGG 0.541074 4_3:-40915143 Msa0641110:CDS
TACACATACCTGCATACTAC+AGG 0.542466 4_3:+40913188 None:intergenic
AATCCCTTTGAGTGTTCTTG+AGG 0.545874 4_3:-40913399 Msa0641110:CDS
TCTGTCATTCTCCCTATCCA+TGG 0.546039 4_3:-40913721 Msa0641110:CDS
CTAGCAGCAGAGATTGCCGT+TGG 0.552538 4_3:-40914304 Msa0641110:CDS
GCTCACCAGCACTTAATTGG+AGG 0.561497 4_3:-40913262 Msa0641110:CDS
GTTCTTGAGGAGTTGAAAGA+TGG 0.561567 4_3:-40913386 Msa0641110:CDS
ATGGGCAAATTTGAGAGCAA+TGG 0.572449 4_3:-40915261 Msa0641110:CDS
GATCACTGTCCTTTCTGCGG+AGG 0.576290 4_3:+40915229 None:intergenic
GCATTTGATGAAACAAAAGC+TGG 0.578863 4_3:-40913638 Msa0641110:CDS
ATATCTACAAGGTCTATGAC+AGG 0.583641 4_3:+40913515 None:intergenic
AAAGGAAGCATGTGAAACAT+GGG 0.585515 4_3:-40913447 Msa0641110:CDS
ATTGCTCTCAAATTTGCCCA+TGG 0.586753 4_3:+40915263 None:intergenic
TGTTATCGCAACTGGTCACA+CGG 0.587541 4_3:-40915096 Msa0641110:CDS
GCTGCTAGCTCGACACCAGT+TGG 0.587572 4_3:+40914319 None:intergenic
GTTGATGATGGAATAAGGTA+GGG 0.587595 4_3:+40913579 None:intergenic
TCCCCAAAACAAGGACCGAA+AGG 0.591045 4_3:-40915067 Msa0641110:CDS
TGGAGCCATCCTCCGCAGAA+AGG 0.595962 4_3:-40915238 Msa0641110:CDS
GATAATCATAGGCGATCTGA+CGG 0.601872 4_3:+40915120 None:intergenic
CGGAATCTATCCCCAAAACA+AGG 0.611323 4_3:-40915076 Msa0641110:CDS
CTCACCAGCACTTAATTGGA+GGG 0.611496 4_3:-40913261 Msa0641110:CDS
GTTGATCACTGTCCTTTCTG+CGG 0.624118 4_3:+40915226 None:intergenic
TGATGGCACTTGATATAACA+AGG 0.655923 4_3:+40915177 None:intergenic
AGGCTTGACCAATATAAAGG+AGG 0.661867 4_3:-40915047 Msa0641110:intron
GGTCTATGACAGGAATAACA+TGG 0.683113 4_3:+40913525 None:intergenic
AAGGAAGCATGTGAAACATG+GGG 0.696392 4_3:-40913446 Msa0641110:CDS
GTAAAAGGACTTGTTGATGG+AGG 0.724997 4_3:-40913614 Msa0641110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACATGATTTAATTTTAAAA+AGG - chr4_3:40915288-40915307 Msa0641110:intron 10.0%
!!! ACATGATTTAATTTTAAAAA+GGG - chr4_3:40915289-40915308 Msa0641110:intron 10.0%
!!! ATATTCTTTTTTTTTTTTGA+AGG + chr4_3:40917646-40917665 None:intergenic 10.0%
!! TAGTTTGAATTAGAAAATAA+TGG + chr4_3:40913262-40913281 None:intergenic 15.0%
!! GAAAAATTATTCTTTATTCT+GGG + chr4_3:40913700-40913719 None:intergenic 15.0%
!!! ATATTAATAACTTTAGAATG+AGG + chr4_3:40913812-40913831 None:intergenic 15.0%
!! ACATTAACAAAAGATAAAAA+TGG + chr4_3:40914250-40914269 None:intergenic 15.0%
!! TAAAATATAAAACTAACACA+AGG + chr4_3:40915629-40915648 None:intergenic 15.0%
!! TAATAACTAAAACTAAACAT+TGG + chr4_3:40917579-40917598 None:intergenic 15.0%
!!! TAGTTTTAGTTATTATGTTT+AGG - chr4_3:40917584-40917603 Msa0641110:intron 15.0%
!!! AGTTTTAGTTATTATGTTTA+GGG - chr4_3:40917585-40917604 Msa0641110:intron 15.0%
!!! AAAGTTGCTATTAAAAATAA+AGG + chr4_3:40918210-40918229 None:intergenic 15.0%
!! TTGAATTAGAAAATAATGGT+TGG + chr4_3:40913258-40913277 None:intergenic 20.0%
!!! AGAAAGTTGATTCATTTATA+TGG + chr4_3:40913557-40913576 None:intergenic 20.0%
!! GGAAAAATTATTCTTTATTC+TGG + chr4_3:40913701-40913720 None:intergenic 20.0%
!!! CTTAGAAGTTTTTTCTTAAT+AGG - chr4_3:40914020-40914039 Msa0641110:intron 20.0%
!!! TATTTTGTATGCTTGAAATA+AGG + chr4_3:40914211-40914230 None:intergenic 20.0%
!!! TTTTTCTCTTACAAATGAAT+TGG + chr4_3:40914874-40914893 None:intergenic 20.0%
!! TACTGTAAATATAGAGTATA+TGG + chr4_3:40915148-40915167 None:intergenic 20.0%
!! GATATGATAGTCATAAAAAA+TGG + chr4_3:40915331-40915350 None:intergenic 20.0%
!!! CTTCTCGAATTTTTTTAAAT+TGG + chr4_3:40915520-40915539 None:intergenic 20.0%
!! CAATTTAAAAAAATTCGAGA+AGG - chr4_3:40915518-40915537 Msa0641110:intron 20.0%
!!! AACTTTTTTGAAAGATGATT+TGG - chr4_3:40917473-40917492 Msa0641110:intron 20.0%
!!! TTACTTTGTGAACAATTTTT+TGG + chr4_3:40918037-40918056 None:intergenic 20.0%
!! AAAAATTGTTCACAAAGTAA+AGG - chr4_3:40918037-40918056 Msa0641110:intron 20.0%
!!! TTTTTTCAAGTTGTTAATCA+TGG - chr4_3:40918080-40918099 Msa0641110:intron 20.0%
! TGCTTCTTTAAATGATAACA+AGG + chr4_3:40913367-40913386 None:intergenic 25.0%
!! AAAAAAGTTTCTGAAAACGT+AGG + chr4_3:40913390-40913409 None:intergenic 25.0%
!! ATTTTCTATAGCAACTTTCA+TGG - chr4_3:40913462-40913481 Msa0641110:CDS 25.0%
! GATTCATTTATATGGTTGTT+TGG + chr4_3:40913549-40913568 None:intergenic 25.0%
!! CATAGACAATGTATTACTTT+TGG + chr4_3:40913600-40913619 None:intergenic 25.0%
! AAGTAATACATTGTCTATGA+TGG - chr4_3:40913601-40913620 Msa0641110:CDS 25.0%
! ATCATTCTATTATGCATATG+AGG + chr4_3:40913775-40913794 None:intergenic 25.0%
! AACAAAAGATAAAAATGGTG+AGG + chr4_3:40914245-40914264 None:intergenic 25.0%
! TGAAGATGAATTAAAGCATA+AGG + chr4_3:40914359-40914378 None:intergenic 25.0%
! TGAATATCAGATGAATTTCT+GGG + chr4_3:40914408-40914427 None:intergenic 25.0%
! ATGAATATCAGATGAATTTC+TGG + chr4_3:40914409-40914428 None:intergenic 25.0%
! ATGAATCAGATAAGAAGAAA+AGG + chr4_3:40914843-40914862 None:intergenic 25.0%
!!! AAAAATCTCATCTAGCTTTA+AGG - chr4_3:40914889-40914908 Msa0641110:intron 25.0%
!!! AAAATCTCATCTAGCTTTAA+GGG - chr4_3:40914890-40914909 Msa0641110:intron 25.0%
! TGATAGTCATAAAAAATGGA+GGG + chr4_3:40915327-40915346 None:intergenic 25.0%
! ATGATAGTCATAAAAAATGG+AGG + chr4_3:40915328-40915347 None:intergenic 25.0%
! TATCATATCTACTTAAGTAG+AGG - chr4_3:40915342-40915361 Msa0641110:intron 25.0%
! TCAACACATAAAGAAATAGA+TGG - chr4_3:40915453-40915472 Msa0641110:intron 25.0%
! CAACACATAAAGAAATAGAT+GGG - chr4_3:40915454-40915473 Msa0641110:intron 25.0%
! AGACTTATAATAAGAGACTA+AGG + chr4_3:40915742-40915761 None:intergenic 25.0%
! TCACTTATGTTATGAAAAGT+TGG - chr4_3:40915773-40915792 Msa0641110:intron 25.0%
!!! GTTAATGTGTTTATTTTGTG+CGG - chr4_3:40915803-40915822 Msa0641110:intron 25.0%
! CCATAATATAAATGTTTCAG+AGG + chr4_3:40916034-40916053 None:intergenic 25.0%
!!! CCTCTGAAACATTTATATTA+TGG - chr4_3:40916031-40916050 Msa0641110:intron 25.0%
!!! TCTCTAAAACCTTTATATTG+TGG - chr4_3:40916057-40916076 Msa0641110:intron 25.0%
! TACAGAACAAGTTCAATATA+AGG + chr4_3:40916162-40916181 None:intergenic 25.0%
!! TATTGAACTTGTTCTGTAAA+TGG - chr4_3:40916164-40916183 Msa0641110:intron 25.0%
!! CTTTTGTGAAATATTCTCTA+TGG + chr4_3:40916301-40916320 None:intergenic 25.0%
! CATAGAGAATATTTCACAAA+AGG - chr4_3:40916299-40916318 Msa0641110:intron 25.0%
! TTTAGATTCAGTTATGTTGA+TGG + chr4_3:40916345-40916364 None:intergenic 25.0%
! TAACTGATCAAATATCAATC+AGG - chr4_3:40916529-40916548 Msa0641110:intron 25.0%
! AACTGATCAAATATCAATCA+GGG - chr4_3:40916530-40916549 Msa0641110:intron 25.0%
! TGTGATTTCTTACAATATCA+AGG + chr4_3:40916581-40916600 None:intergenic 25.0%
! AGTTAGTGAGTCTTAAAAAA+GGG + chr4_3:40916698-40916717 None:intergenic 25.0%
! AATCCTAGCAATTAATAGTA+TGG + chr4_3:40916815-40916834 None:intergenic 25.0%
! TACTATTAATTGCTAGGATT+TGG - chr4_3:40916815-40916834 Msa0641110:intron 25.0%
! TCAAGATTGCTAGAATATAT+TGG - chr4_3:40917258-40917277 Msa0641110:intron 25.0%
! CTTCAAGAAAGACATTAAAA+TGG - chr4_3:40917289-40917308 Msa0641110:intron 25.0%
! CATTAAAATGGCTTAAATCA+AGG - chr4_3:40917301-40917320 Msa0641110:intron 25.0%
!! ATACACATTTTCTATGCATA+GGG - chr4_3:40917421-40917440 Msa0641110:intron 25.0%
!!! TTTTTGAAAGATGATTTGGA+TGG - chr4_3:40917477-40917496 Msa0641110:intron 25.0%
! TAACTAAAACTAAACATTGG+TGG + chr4_3:40917576-40917595 None:intergenic 25.0%
!!! ATTATGTTTAGGGCTTTATT+AGG - chr4_3:40917595-40917614 Msa0641110:intron 25.0%
!! TTCATGCGAATTTTTATTGT+AGG - chr4_3:40917665-40917684 Msa0641110:intron 25.0%
!!! GAATTTTCATTTGATTTCCA+TGG + chr4_3:40917801-40917820 None:intergenic 25.0%
! TTCAATATACAATCAAGGTT+AGG + chr4_3:40917834-40917853 None:intergenic 25.0%
! GTTCATTCAATATACAATCA+AGG + chr4_3:40917839-40917858 None:intergenic 25.0%
!! CTTTGTTATCAATATCTACA+AGG + chr4_3:40918001-40918020 None:intergenic 25.0%
!!! ACAATTTTTTGGTGAATACT+TGG + chr4_3:40918026-40918045 None:intergenic 25.0%
! AAGATTTGTATACTAGAGAT+AGG - chr4_3:40918177-40918196 Msa0641110:intron 25.0%
!!! CAAATGATTTTGAAGCATCA+TGG + chr4_3:40913299-40913318 None:intergenic 30.0%
CATGATGCTTCAAAATCATT+TGG - chr4_3:40913297-40913316 Msa0641110:CDS 30.0%
TAGTCAGTTATTAGAAGAGT+TGG - chr4_3:40913493-40913512 Msa0641110:CDS 30.0%
!!! AATGTATTACTTTTGGAGCA+GGG + chr4_3:40913593-40913612 None:intergenic 30.0%
! CTGATTTTTGCACATTTTAC+GGG + chr4_3:40913633-40913652 None:intergenic 30.0%
! CCTGATTTTTGCACATTTTA+CGG + chr4_3:40913634-40913653 None:intergenic 30.0%
CGTAAAATGTGCAAAAATCA+GGG - chr4_3:40913632-40913651 Msa0641110:CDS 30.0%
!!! GCATCTAAAGCATGTTTTTT+GGG + chr4_3:40913739-40913758 None:intergenic 30.0%
! TTAAATCTCTCGAGTACTTT+TGG - chr4_3:40913865-40913884 Msa0641110:intron 30.0%
! AAGTGGTATGTTTTCAACAT+TGG - chr4_3:40913941-40913960 Msa0641110:intron 30.0%
! GTTTTCAAACTGATAGAAGA+AGG + chr4_3:40914097-40914116 None:intergenic 30.0%
ATTGCATCATTCTCTTGTAA+GGG - chr4_3:40914126-40914145 Msa0641110:intron 30.0%
AAAAACTATGCACACACTAT+TGG + chr4_3:40914292-40914311 None:intergenic 30.0%
GATGAATTAAAGCATAAGGT+TGG + chr4_3:40914355-40914374 None:intergenic 30.0%
TGAATGTCAGATGAATTTCT+GGG + chr4_3:40914441-40914460 None:intergenic 30.0%
ATGAATGTCAGATGAATTTC+TGG + chr4_3:40914442-40914461 None:intergenic 30.0%
ACATTCATACATATGAACCT+AGG - chr4_3:40914454-40914473 Msa0641110:intron 30.0%
! TTGAACTTCAGAGTGTTTAT+GGG + chr4_3:40914537-40914556 None:intergenic 30.0%
! TTTGAACTTCAGAGTGTTTA+TGG + chr4_3:40914538-40914557 None:intergenic 30.0%
AGCAAAAGTTGCTAAGTATT+AGG - chr4_3:40914577-40914596 Msa0641110:intron 30.0%
AGGTCAAGAAACTCTATAAA+AGG - chr4_3:40914643-40914662 Msa0641110:intron 30.0%
GGTCAAGAAACTCTATAAAA+GGG - chr4_3:40914644-40914663 Msa0641110:intron 30.0%
GTCAAGAAACTCTATAAAAG+GGG - chr4_3:40914645-40914664 Msa0641110:intron 30.0%
!!! TTCACACTCTTTGAGATTTT+AGG + chr4_3:40914780-40914799 None:intergenic 30.0%
ATCAGATAAGAAGAAAAGGA+AGG + chr4_3:40914839-40914858 None:intergenic 30.0%
!! CTTTAAGGGTATTAAAGTGT+AGG - chr4_3:40914904-40914923 Msa0641110:intron 30.0%
GAGTATATGGATAGAAGATT+AGG + chr4_3:40915135-40915154 None:intergenic 30.0%
TTATGTGTTGAGTTCCTTTA+TGG + chr4_3:40915444-40915463 None:intergenic 30.0%
AAAGATTTAACCCTAAGTCA+AGG + chr4_3:40915576-40915595 None:intergenic 30.0%
TTAGGGTTAAATCTTTGACT+CGG - chr4_3:40915580-40915599 Msa0641110:intron 30.0%
CTTGCTCAAAGTTGTATTTA+CGG - chr4_3:40915700-40915719 Msa0641110:intron 30.0%
TTGCTCAAAGTTGTATTTAC+GGG - chr4_3:40915701-40915720 Msa0641110:intron 30.0%
AAACCTTTATATTGTGGTTG+TGG - chr4_3:40916063-40916082 Msa0641110:intron 30.0%
AACCTTTATATTGTGGTTGT+GGG - chr4_3:40916064-40916083 Msa0641110:intron 30.0%
TAATTAGAGTTGTTGAACAC+AGG - chr4_3:40916198-40916217 Msa0641110:intron 30.0%
TGCGATAACAAGATAATCAT+AGG + chr4_3:40916396-40916415 None:intergenic 30.0%
TTTATATTGGTCAAGCCTTT+CGG + chr4_3:40916453-40916472 None:intergenic 30.0%
ATTGCTTACCTCCTTTATAT+TGG + chr4_3:40916466-40916485 None:intergenic 30.0%
AGGTAAGCAATAATACTTAG+TGG - chr4_3:40916475-40916494 Msa0641110:intron 30.0%
CAACAACAAAACAATTGCAA+TGG + chr4_3:40916627-40916646 None:intergenic 30.0%
GAGTTAGTGAGTCTTAAAAA+AGG + chr4_3:40916699-40916718 None:intergenic 30.0%
ACAGTTTGATCTCAAGAAAA+TGG + chr4_3:40916884-40916903 None:intergenic 30.0%
ATAAAACCGAACTTGAAATC+TGG - chr4_3:40916940-40916959 Msa0641110:intron 30.0%
ACAATTGCATTTGAGTAATG+AGG - chr4_3:40917088-40917107 Msa0641110:intron 30.0%
!!! TTTTTTACCAGGAAAACCAA+CGG + chr4_3:40917217-40917236 None:intergenic 30.0%
!!! ACTATAGTCACTTTTTTACC+AGG + chr4_3:40917228-40917247 None:intergenic 30.0%
AAAGTGACTATAGTGCATAA+AGG - chr4_3:40917234-40917253 Msa0641110:intron 30.0%
! AATGTCTTTCTTGAAGCTTT+TGG + chr4_3:40917285-40917304 None:intergenic 30.0%
ACTCCTTCACAAATGAAAAT+AGG - chr4_3:40917361-40917380 Msa0641110:intron 30.0%
! AGTCCTATTTTCATTTGTGA+AGG + chr4_3:40917367-40917386 None:intergenic 30.0%
! GATACACATTTTCTATGCAT+AGG - chr4_3:40917420-40917439 Msa0641110:intron 30.0%
GAGCTCTTAATGTTATCTTT+AGG - chr4_3:40917720-40917739 Msa0641110:intron 30.0%
! TCATTTGATTTCCATGGATA+GGG + chr4_3:40917795-40917814 None:intergenic 30.0%
! TTCATTTGATTTCCATGGAT+AGG + chr4_3:40917796-40917815 None:intergenic 30.0%
!! CATATTTATCAGGTTGATGA+TGG + chr4_3:40917938-40917957 None:intergenic 30.0%
TAGGCTAACTCATATTTATC+AGG + chr4_3:40917948-40917967 None:intergenic 30.0%
ATGGATCCCATCTTACTTTA+AGG + chr4_3:40913206-40913225 None:intergenic 35.0%
TGTTTGATCTTCGTAGCATA+TGG + chr4_3:40913225-40913244 None:intergenic 35.0%
TGCTACGAAGATCAAACATA+TGG - chr4_3:40913227-40913246 Msa0641110:CDS 35.0%
GCTACGAAGATCAAACATAT+GGG - chr4_3:40913228-40913247 Msa0641110:CDS 35.0%
!!! CAATGTATTACTTTTGGAGC+AGG + chr4_3:40913594-40913613 None:intergenic 35.0%
CCGTAAAATGTGCAAAAATC+AGG - chr4_3:40913631-40913650 Msa0641110:CDS 35.0%
!!! GGCATCTAAAGCATGTTTTT+TGG + chr4_3:40913740-40913759 None:intergenic 35.0%
CATATGAGGTAGATGATGAA+GGG + chr4_3:40913761-40913780 None:intergenic 35.0%
GCAATATACTCTTGTGATCA+TGG - chr4_3:40913979-40913998 Msa0641110:intron 35.0%
CATTGCATCATTCTCTTGTA+AGG - chr4_3:40914125-40914144 Msa0641110:intron 35.0%
GACAAAAGAAGTGGATCAAA+GGG + chr4_3:40914173-40914192 None:intergenic 35.0%
AGACAAAAGAAGTGGATCAA+AGG + chr4_3:40914174-40914193 None:intergenic 35.0%
! TTGATCCACTTCTTTTGTCT+TGG - chr4_3:40914174-40914193 Msa0641110:intron 35.0%
ATAAAAATGGTGAGGAGAGT+TGG + chr4_3:40914237-40914256 None:intergenic 35.0%
CTTGACCTCTTGTAGTTATT+AGG + chr4_3:40914631-40914650 None:intergenic 35.0%
TACAGGTTGTAATTGTTCCA+AGG - chr4_3:40914997-40915016 Msa0641110:intron 35.0%
ACAGGTTGTAATTGTTCCAA+GGG - chr4_3:40914998-40915017 Msa0641110:intron 35.0%
!! AAGCTTCTCAAGTTGAAACT+GGG + chr4_3:40915261-40915280 None:intergenic 35.0%
!! AAAGCTTCTCAAGTTGAAAC+TGG + chr4_3:40915262-40915281 None:intergenic 35.0%
GAGCATATTATGTCAGTTGT+TGG + chr4_3:40915393-40915412 None:intergenic 35.0%
!! AGGTCCTATTTGCTATGATA+AGG - chr4_3:40915538-40915557 Msa0641110:intron 35.0%
AGGACCTTATCATAGCAAAT+AGG + chr4_3:40915545-40915564 None:intergenic 35.0%
! GACCTCTAAAGATATTTCTC+TGG - chr4_3:40915676-40915695 Msa0641110:intron 35.0%
CGTAAATACAACTTTGAGCA+AGG + chr4_3:40915702-40915721 None:intergenic 35.0%
AGTTTCATTATGATCCCGAT+GGG - chr4_3:40915912-40915931 Msa0641110:intron 35.0%
AACCTCAATTTAAACCCATC+GGG + chr4_3:40915929-40915948 None:intergenic 35.0%
CAACCTCAATTTAAACCCAT+CGG + chr4_3:40915930-40915949 None:intergenic 35.0%
! TGCTACGAACTTTTATACTG+TGG - chr4_3:40915964-40915983 Msa0641110:intron 35.0%
!!! AGGAGTATTTTGAGATTCCA+TGG - chr4_3:40916222-40916241 Msa0641110:intron 35.0%
!!! GGAGTATTTTGAGATTCCAT+GGG - chr4_3:40916223-40916242 Msa0641110:intron 35.0%
TGATGGCACTTGATATAACA+AGG + chr4_3:40916328-40916347 None:intergenic 35.0%
! GATTATCTTGTTATCGCAAC+TGG - chr4_3:40916398-40916417 Msa0641110:intron 35.0%
GAAAGGCTTGACCAATATAA+AGG - chr4_3:40916452-40916471 Msa0641110:intron 35.0%
ATACTTAGTGGTAACTCTCT+AGG - chr4_3:40916487-40916506 Msa0641110:intron 35.0%
CAACAAAACAATTGCAATGG+AGG + chr4_3:40916624-40916643 None:intergenic 35.0%
CCTAGCAATTAATAGTATGG+TGG + chr4_3:40916812-40916831 None:intergenic 35.0%
CCACCATACTATTAATTGCT+AGG - chr4_3:40916809-40916828 Msa0641110:intron 35.0%
TGATTGCGTGAGATTATTGA+TGG + chr4_3:40916849-40916868 None:intergenic 35.0%
CACACAACTTGACACAAATT+AGG + chr4_3:40917052-40917071 None:intergenic 35.0%
AGGACTTATCAAACTTCAGT+TGG - chr4_3:40917381-40917400 Msa0641110:intron 35.0%
! AAAGATGATTTGGATGGTCA+TGG - chr4_3:40917483-40917502 Msa0641110:intron 35.0%
!! TGTTTAGGGCTTTATTAGGT+AGG - chr4_3:40917599-40917618 Msa0641110:intron 35.0%
GCATTTGATGAAACAAAAGC+TGG - chr4_3:40917864-40917883 Msa0641110:intron 35.0%
GAAACAAAAGCTGGTGTAAA+AGG - chr4_3:40917873-40917892 Msa0641110:intron 35.0%
!! GTTGATGATGGAATAAGGTA+GGG + chr4_3:40917926-40917945 None:intergenic 35.0%
!! ATCAGGTTGATGATGGAATA+AGG + chr4_3:40917931-40917950 None:intergenic 35.0%
! AATAACATGGCTTGTGTTGT+AGG + chr4_3:40917967-40917986 None:intergenic 35.0%
ATATCTACAAGGTCTATGAC+AGG + chr4_3:40917990-40918009 None:intergenic 35.0%
! TAAAGGAAGCATGTGAAACA+TGG - chr4_3:40918054-40918073 Msa0641110:intron 35.0%
! AAAGGAAGCATGTGAAACAT+GGG - chr4_3:40918055-40918074 Msa0641110:intron 35.0%
! AGTTGAAAGATGGTGTTAAG+TGG - chr4_3:40918126-40918145 Msa0641110:intron 35.0%
!!! TGTTAAGTGGTTTTATGAGC+AGG - chr4_3:40918139-40918158 Msa0641110:intron 35.0%
!! ACAGGAATATCTTCTGGTTT+GGG + chr4_3:40918299-40918318 None:intergenic 35.0%
! TACAGGAATATCTTCTGGTT+TGG + chr4_3:40918300-40918319 None:intergenic 35.0%
CATACTACAGGAATATCTTC+TGG + chr4_3:40918305-40918324 None:intergenic 35.0%
! ATAGTTTGAAGTCGTGCGTT+TGG + chr4_3:40913335-40913354 None:intergenic 40.0%
TCTATAGCAACTTTCATGGC+AGG - chr4_3:40913466-40913485 Msa0641110:CDS 40.0%
TTTGGGCAGATGGTATTTGT+AGG + chr4_3:40913722-40913741 None:intergenic 40.0%
!!! AAGCATGTTTTTTGGGCAGA+TGG + chr4_3:40913732-40913751 None:intergenic 40.0%
GCATATGAGGTAGATGATGA+AGG + chr4_3:40913762-40913781 None:intergenic 40.0%
GGAGGGGTTATGAAATTGTT+GGG + chr4_3:40913906-40913925 None:intergenic 40.0%
TGGAGGGGTTATGAAATTGT+TGG + chr4_3:40913907-40913926 None:intergenic 40.0%
TTCTTAATAGGCGAAGCAAG+TGG - chr4_3:40914032-40914051 Msa0641110:intron 40.0%
TGTAAGGGTCCTTATTCTGA+CGG - chr4_3:40914141-40914160 Msa0641110:intron 40.0%
! TCCACTTCTTTTGTCTTGGT+TGG - chr4_3:40914178-40914197 Msa0641110:intron 40.0%
ACCAACCAAGACAAAAGAAG+TGG + chr4_3:40914182-40914201 None:intergenic 40.0%
ATGAGCTTCAAAATGCTCCT+AGG + chr4_3:40914474-40914493 None:intergenic 40.0%
! AGAGTGTTTATGGGTTCATC+AGG + chr4_3:40914528-40914547 None:intergenic 40.0%
TTGCTAAGTATTAGGACACG+TGG - chr4_3:40914585-40914604 Msa0641110:intron 40.0%
CACGTCCTAATAACTACAAG+AGG - chr4_3:40914623-40914642 Msa0641110:intron 40.0%
CTTGTGTGACTTAGCAAAAG+AGG - chr4_3:40914948-40914967 Msa0641110:intron 40.0%
TCCAAGGGAACAAAGTTGTA+CGG - chr4_3:40915013-40915032 Msa0641110:intron 40.0%
ACAAGAAGTTCACCCAATGT+GGG + chr4_3:40915108-40915127 None:intergenic 40.0%
!! TTCTCAAGTTGAAACTGGGA+AGG + chr4_3:40915257-40915276 None:intergenic 40.0%
TGTTGAGTTCCTTTATGGTC+AGG + chr4_3:40915439-40915458 None:intergenic 40.0%
GATTTAACCCTAAGTCAAGG+AGG + chr4_3:40915573-40915592 None:intergenic 40.0%
GGCCAGAGAAATATCTTTAG+AGG + chr4_3:40915681-40915700 None:intergenic 40.0%
CAGTTTCATTATGATCCCGA+TGG - chr4_3:40915911-40915930 Msa0641110:intron 40.0%
! ATCCCGATGGGTTTAAATTG+AGG - chr4_3:40915924-40915943 Msa0641110:intron 40.0%
AGCCCACAACCACAATATAA+AGG + chr4_3:40916069-40916088 None:intergenic 40.0%
TAGAGTTGTTGAACACAGGA+AGG - chr4_3:40916202-40916221 Msa0641110:intron 40.0%
ATTGCTCTCAAATTTGCCCA+TGG + chr4_3:40916242-40916261 None:intergenic 40.0%
ATGGGCAAATTTGAGAGCAA+TGG - chr4_3:40916241-40916260 Msa0641110:intron 40.0%
! TCTAAAGTCTTCACTGCTGA+TGG - chr4_3:40916359-40916378 Msa0641110:intron 40.0%
GATAATCATAGGCGATCTGA+CGG + chr4_3:40916385-40916404 None:intergenic 40.0%
AGGCTTGACCAATATAAAGG+AGG - chr4_3:40916455-40916474 Msa0641110:intron 40.0%
! CGATCTTGATCGAAGCATTA+AGG + chr4_3:40916665-40916684 None:intergenic 40.0%
TGAGTCTTAAAAAAGGGCCT+GGG + chr4_3:40916692-40916711 None:intergenic 40.0%
! GATGATTGAGCTAGTCTACA+AGG - chr4_3:40916738-40916757 Msa0641110:intron 40.0%
! TGCGTGAGATTATTGATGGT+AGG + chr4_3:40916845-40916864 None:intergenic 40.0%
ATTGTTAGACCGAGATTAGG+CGG + chr4_3:40916967-40916986 None:intergenic 40.0%
GTGATTGTTAGACCGAGATT+AGG + chr4_3:40916970-40916989 None:intergenic 40.0%
!!! GCACGTTCAGTTTTGATTGT+CGG - chr4_3:40917153-40917172 Msa0641110:intron 40.0%
! TGGCAACAAGTTGAAACCAT+TGG + chr4_3:40917556-40917575 None:intergenic 40.0%
!! GGTGTAAAAGGACTTGTTGA+TGG - chr4_3:40917885-40917904 Msa0641110:intron 40.0%
!! GTAAAAGGACTTGTTGATGG+AGG - chr4_3:40917888-40917907 Msa0641110:intron 40.0%
!! GGTTGATGATGGAATAAGGT+AGG + chr4_3:40917927-40917946 None:intergenic 40.0%
GGTCTATGACAGGAATAACA+TGG + chr4_3:40917980-40917999 None:intergenic 40.0%
! AAGGAAGCATGTGAAACATG+GGG - chr4_3:40918056-40918075 Msa0641110:intron 40.0%
AATCCCTTTGAGTGTTCTTG+AGG - chr4_3:40918103-40918122 Msa0641110:intron 40.0%
ACTCCTCAAGAACACTCAAA+GGG + chr4_3:40918109-40918128 None:intergenic 40.0%
AACTCCTCAAGAACACTCAA+AGG + chr4_3:40918110-40918129 None:intergenic 40.0%
GTTCTTGAGGAGTTGAAAGA+TGG - chr4_3:40918116-40918135 Msa0641110:intron 40.0%
ATAGCTCACCAGCACTTAAT+TGG - chr4_3:40918237-40918256 Msa0641110:intron 40.0%
ATACCACTTGTCGAAAGAGC+AGG + chr4_3:40913930-40913949 None:intergenic 45.0%
GGGAATCAACCGTCAGAATA+AGG + chr4_3:40914153-40914172 None:intergenic 45.0%
TGTATTCTCTAAGCCTCAGC+AGG + chr4_3:40914981-40915000 None:intergenic 45.0%
TGCTGAGGCTTAGAGAATAC+AGG - chr4_3:40914980-40914999 Msa0641110:intron 45.0%
ACCGTACAACTTTGTTCCCT+TGG + chr4_3:40915017-40915036 None:intergenic 45.0%
GGTTGTCTCAAGCATCATAG+TGG - chr4_3:40915051-40915070 Msa0641110:CDS 45.0%
GGATAACTCTCACAGTTGTG+AGG - chr4_3:40915072-40915091 Msa0641110:CDS 45.0%
CACAAGAAGTTCACCCAATG+TGG + chr4_3:40915109-40915128 None:intergenic 45.0%
TACTTAAGTAGAGGCCCCAA+AGG - chr4_3:40915351-40915370 Msa0641110:intron 45.0%
ACTTAAGTAGAGGCCCCAAA+GGG - chr4_3:40915352-40915371 Msa0641110:intron 45.0%
TCAGTTGTTGGAGTGCAGTA+GGG + chr4_3:40915381-40915400 None:intergenic 45.0%
CAGGCAGTGAAGCTATACAT+TGG + chr4_3:40915420-40915439 None:intergenic 45.0%
CTCGTATCCTCCTTGACTTA+GGG - chr4_3:40915563-40915582 Msa0641110:intron 45.0%
TTCAGAGGTCTTTGCGTTTG+CGG + chr4_3:40916019-40916038 None:intergenic 45.0%
ATGATGTCTGATCACACTCG+TGG - chr4_3:40916122-40916141 Msa0641110:intron 45.0%
GGCAAATTTGAGAGCAATGG+TGG - chr4_3:40916244-40916263 Msa0641110:intron 45.0%
GTTGATCACTGTCCTTTCTG+CGG + chr4_3:40916279-40916298 None:intergenic 45.0%
TGTTATCGCAACTGGTCACA+CGG - chr4_3:40916406-40916425 Msa0641110:intron 45.0%
CGGAATCTATCCCCAAAACA+AGG - chr4_3:40916426-40916445 Msa0641110:intron 45.0%
!!! AGCCTTTCGGTCCTTGTTTT+GGG + chr4_3:40916440-40916459 None:intergenic 45.0%
!! AAGCCTTTCGGTCCTTGTTT+TGG + chr4_3:40916441-40916460 None:intergenic 45.0%
TCAATCAGGGTTTCAAACCG+TGG - chr4_3:40916543-40916562 Msa0641110:intron 45.0%
GTGAGTCTTAAAAAAGGGCC+TGG + chr4_3:40916693-40916712 None:intergenic 45.0%
ATCTCACGCAATCAGCACAA+TGG - chr4_3:40916855-40916874 Msa0641110:intron 45.0%
AAATCTGGACCGCCTAATCT+CGG - chr4_3:40916955-40916974 Msa0641110:intron 45.0%
!!! CGTTCAGTTTTGATTGTCGG+TGG - chr4_3:40917156-40917175 Msa0641110:intron 45.0%
!!! TCAGTTTTGATTGTCGGTGG+AGG - chr4_3:40917159-40917178 Msa0641110:intron 45.0%
! TTGATGATCCTCAGAGCCAA+TGG - chr4_3:40917537-40917556 Msa0641110:intron 45.0%
!! AGTTGAAACCATTGGCTCTG+AGG + chr4_3:40917548-40917567 None:intergenic 45.0%
TCTGTCATTCTCCCTATCCA+TGG - chr4_3:40917781-40917800 Msa0641110:intron 45.0%
CTCACCAGCACTTAATTGGA+GGG - chr4_3:40918241-40918260 Msa0641110:intron 45.0%
GTATCCCTCCAATTAAGTGC+TGG + chr4_3:40918248-40918267 None:intergenic 45.0%
!! TCTTCTGGTTTGGGAGTATC+AGG + chr4_3:40918290-40918309 None:intergenic 45.0%
TTGTCGAAAGAGCAGGTGGA+GGG + chr4_3:40913923-40913942 None:intergenic 50.0%
GACACGTGGCACAAGACTAT+TGG - chr4_3:40914599-40914618 Msa0641110:intron 50.0%
! GTACGGTGCATGAGTTGAGA+AGG - chr4_3:40915030-40915049 Msa0641110:intron 50.0%
ACTCTCACAGTTGTGAGGAG+TGG - chr4_3:40915077-40915096 Msa0641110:CDS 50.0%
!! AGGAGTGGACTAACCCACAT+TGG - chr4_3:40915092-40915111 Msa0641110:CDS 50.0%
!! GGAGTGGACTAACCCACATT+GGG - chr4_3:40915093-40915112 Msa0641110:CDS 50.0%
GTCAGTTGTTGGAGTGCAGT+AGG + chr4_3:40915382-40915401 None:intergenic 50.0%
GCTTCACTGCCTGACCATAA+AGG - chr4_3:40915427-40915446 Msa0641110:intron 50.0%
CAAGTCGACACTAGTGCGTT+AGG + chr4_3:40915493-40915512 None:intergenic 50.0%
CCTAAGTCAAGGAGGATACG+AGG + chr4_3:40915565-40915584 None:intergenic 50.0%
CCTCGTATCCTCCTTGACTT+AGG - chr4_3:40915562-40915581 Msa0641110:intron 50.0%
TCCCCAAAACAAGGACCGAA+AGG - chr4_3:40916435-40916454 Msa0641110:intron 50.0%
!!! GCCTTTCGGTCCTTGTTTTG+GGG + chr4_3:40916439-40916458 None:intergenic 50.0%
TCGATCAAGATCGCAAACCC+AGG - chr4_3:40916672-40916691 Msa0641110:intron 50.0%
TCACGCAATCAGCACAATGG+TGG - chr4_3:40916858-40916877 Msa0641110:intron 50.0%
!! GGCGGTCCAGATTTCAAGTT+CGG + chr4_3:40916949-40916968 None:intergenic 50.0%
!!! GAGATTGCCGTTGGTTTTCC+TGG - chr4_3:40917207-40917226 Msa0641110:intron 50.0%
CCTAGCTATGCTGTAGCAAG+TGG + chr4_3:40917450-40917469 None:intergenic 50.0%
! CCACTTGCTACAGCATAGCT+AGG - chr4_3:40917447-40917466 Msa0641110:intron 50.0%
GCTCACCAGCACTTAATTGG+AGG - chr4_3:40918240-40918259 Msa0641110:intron 50.0%
TGTCGAAAGAGCAGGTGGAG+GGG + chr4_3:40913922-40913941 None:intergenic 55.0%
CTTGTCGAAAGAGCAGGTGG+AGG + chr4_3:40913924-40913943 None:intergenic 55.0%
CCACTTGTCGAAAGAGCAGG+TGG + chr4_3:40913927-40913946 None:intergenic 55.0%
CCACCTGCTCTTTCGACAAG+TGG - chr4_3:40913924-40913943 Msa0641110:intron 55.0%
AAGAGGTTGTGAGCCTGCTG+AGG - chr4_3:40914965-40914984 Msa0641110:intron 55.0%
TGCAGTAGGGAGACCCTTTG+GGG + chr4_3:40915368-40915387 None:intergenic 55.0%
GTGCAGTAGGGAGACCCTTT+GGG + chr4_3:40915369-40915388 None:intergenic 55.0%
AGTGCAGTAGGGAGACCCTT+TGG + chr4_3:40915370-40915389 None:intergenic 55.0%
ACTGTCCTTTCTGCGGAGGA+TGG + chr4_3:40916272-40916291 None:intergenic 55.0%
GATCACTGTCCTTTCTGCGG+AGG + chr4_3:40916276-40916295 None:intergenic 55.0%
CAAGGATCGCTACACGACCA+CGG + chr4_3:40916563-40916582 None:intergenic 55.0%
ATTGTCGGTGGAGGTCCAAC+TGG - chr4_3:40917168-40917187 Msa0641110:intron 55.0%
CTAGCAGCAGAGATTGCCGT+TGG - chr4_3:40917198-40917217 Msa0641110:intron 55.0%
TGGAGCCATCCTCCGCAGAA+AGG - chr4_3:40916264-40916283 Msa0641110:intron 60.0%
GCTGCTAGCTCGACACCAGT+TGG + chr4_3:40917186-40917205 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 40913199 40918325 40913199 ID=Msa0641110;Name=Msa0641110
chr4_3 mRNA 40913199 40918325 40913199 ID=Msa0641110-mRNA-1;Parent=Msa0641110;Name=Msa0641110-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0|0.75|0.66|0.5|4|0|316
chr4_3 exon 40918315 40918325 40918315 ID=Msa0641110-mRNA-1:exon:9221;Parent=Msa0641110-mRNA-1
chr4_3 exon 40915048 40915304 40915048 ID=Msa0641110-mRNA-1:exon:9220;Parent=Msa0641110-mRNA-1
chr4_3 exon 40914296 40914391 40914296 ID=Msa0641110-mRNA-1:exon:9219;Parent=Msa0641110-mRNA-1
chr4_3 exon 40913199 40913782 40913199 ID=Msa0641110-mRNA-1:exon:9218;Parent=Msa0641110-mRNA-1
chr4_3 CDS 40918315 40918325 40918315 ID=Msa0641110-mRNA-1:cds;Parent=Msa0641110-mRNA-1
chr4_3 CDS 40915048 40915304 40915048 ID=Msa0641110-mRNA-1:cds;Parent=Msa0641110-mRNA-1
chr4_3 CDS 40914296 40914391 40914296 ID=Msa0641110-mRNA-1:cds;Parent=Msa0641110-mRNA-1
chr4_3 CDS 40913199 40913782 40913199 ID=Msa0641110-mRNA-1:cds;Parent=Msa0641110-mRNA-1
Gene Sequence

>Msa0641110

ATGTCCTTAAAGAAGGAGTATTTTGAGATTCCATGGGCAAATTTGAGAGCAATGGTGGAGCCATCCTCCGCAGAAAGGACAGTGATCAACCATAGAGAATATTTCACAAAAGGTGACCTTGTTATATCAAGTGCCATCAACATAACTGAATCTAAAGTCTTCACTGCTGATGGCCGTCAGATCGCCTATGATTATCTTGTTATCGCAACTGGTCACACGGAATCTATCCCCAAAACAAGGACCGAAAGGCTTGACCAATATAAAGGAGAAAATACAAAGATAAAATCAGCACGTTCAGTTTTGATTGTCGGTGGAGGTCCAACTGGTGTCGAGCTAGCAGCAGAGATTGCCGTTGGTTTTCCTGGTTTTAAGAAATGCAATCAAATAAAAAAATCAAGACATTTCTGTCATTCTCCCTATCCATGGAAATCAAATGAAAATTCAAAAATCAAGCCTAACCTTGATTGTATATTGAATGAACGCAAAGCATTTGATGAAACAAAAGCTGGTGTAAAAGGACTTGTTGATGGAGGACTTAAGAAGATCCCTACCTTATTCCATCATCAACCTGATAAATATGAGTTAGCCTACAACACAAGCCATGTTATTCCTGTCATAGACCTTGTAGATATTGATAACAAAGATCCAAGTATTCACCAAAAAATTGTTCACAAAGTAAAGGAAGCATGTGAAACATGGGGTTTTTTTCAAGTTGTTAATCATGGAATCCCTTTGAGTGTTCTTGAGGAGTTGAAAGATGGTGTTAAGTGGTTTTATGAGCAGGATACAGAAGTCAAAAAAGATTTGTATACTAGAGATAGGCATAGATCCTTTATTTTTAATAGCAACTTTGATATTTATAGCTCACCAGCACTTAATTGGAGGGATACTTTTACATGTTACTTGACTCCTGATACTCCCAAACCAGAAGATATTCCTGTAGTATGC
Protein sequence

>Msa0641110

MSLKKEYFEIPWANLRAMVEPSSAERTVINHREYFTKGDLVISSAINITESKVFTADGRQIAYDYLVIATGHTESIPKTRTERLDQYKGENTKIKSARSVLIVGGGPTGVELAAEIAVGFPGFKKCNQIKKSRHFCHSPYPWKSNENSKIKPNLDCILNERKAFDETKAGVKGLVDGGLKKIPTLFHHQPDKYELAYNTSHVIPVIDLVDIDNKDPSIHQKIVHKVKEACETWGFFQVVNHGIPLSVLEELKDGVKWFYEQDTEVKKDLYTRDRHRSFIFNSNFDIYSSPALNWRDTFTCYLTPDTPKPEDIPVVC