AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0581400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0581400 MtrunA17_Chr4g0072691 94.050 605 8 1 31 607 2 606 0.0 1157
Msa0581400 MtrunA17_Chr2g0281171 63.249 634 178 9 13 607 16 633 0.0 787
Msa0581400 MtrunA17_Chr4g0048161 62.916 631 181 8 13 607 15 628 0.0 783
Msa0581400 MtrunA17_Chr2g0304831 55.214 585 235 8 28 606 30 593 0.0 623
Msa0581400 MtrunA17_Chr6g0484131 47.301 389 186 8 13 387 4 387 7.99e-117 356
Msa0581400 MtrunA17_Chr6g0484121 47.815 389 184 8 13 387 4 387 5.77e-115 351
Msa0581400 MtrunA17_Chr6g0484111 45.192 416 206 9 13 411 4 414 2.54e-114 350
Msa0581400 MtrunA17_Chr8g0391221 48.670 376 179 7 21 386 13 384 4.41e-113 346
Msa0581400 MtrunA17_Chr8g0391211 46.907 388 187 8 12 386 74 455 8.70e-110 340
Msa0581400 MtrunA17_Chr4g0059411 40.977 471 249 8 15 461 2 467 7.51e-104 325
Msa0581400 MtrunA17_Chr7g0271691 37.464 347 189 11 42 376 31 361 4.78e-61 211
Msa0581400 MtrunA17_Chr7g0271671 32.733 333 211 8 52 378 60 385 4.97e-43 162
Msa0581400 MtrunA17_Chr7g0271681 34.021 291 182 6 91 376 8 293 4.65e-41 155
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0581400 AT5G57580.1 65.974 626 177 7 12 602 12 636 0.0 818
Msa0581400 AT2G18750.3 65.275 599 183 7 25 607 30 619 0.0 781
Msa0581400 AT2G18750.2 65.275 599 183 7 25 607 30 619 0.0 781
Msa0581400 AT2G18750.1 65.275 599 183 7 25 607 30 619 0.0 781
Msa0581400 AT4G25800.1 64.333 600 185 10 21 605 9 594 0.0 748
Msa0581400 AT4G25800.2 64.333 600 185 10 21 605 9 594 0.0 748
Msa0581400 AT2G24300.3 52.913 635 228 14 9 606 3 603 0.0 600
Msa0581400 AT2G24300.2 52.923 633 227 14 11 606 1 599 0.0 598
Msa0581400 AT4G31000.1 50.000 594 239 10 22 606 18 562 0.0 550
Msa0581400 AT2G24300.1 51.986 579 212 12 60 606 8 552 0.0 539
Msa0581400 AT4G31000.2 44.276 594 252 11 22 606 18 541 2.10e-157 462
Msa0581400 AT5G62570.1 45.119 379 193 7 12 386 10 377 1.40e-106 331
Msa0581400 AT5G62570.4 45.879 364 182 7 12 371 10 362 5.25e-105 322
Msa0581400 AT5G62570.2 45.658 357 183 6 34 386 13 362 1.80e-103 322
Msa0581400 AT1G73805.1 45.346 419 202 14 12 417 3 407 4.45e-99 310
Msa0581400 AT5G62570.3 46.897 290 140 6 12 298 10 288 6.71e-82 259
Msa0581400 AT5G26920.3 36.979 384 224 8 15 395 8 376 1.99e-74 244
Msa0581400 AT5G26920.1 38.462 364 206 8 35 395 28 376 1.43e-73 246
Msa0581400 AT5G26920.2 35.885 418 233 11 35 444 28 418 1.60e-69 235

Find 213 sgRNAs with CRISPR-Local

Find 450 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGGCTTCCTTAGCAGTTTC+TGG 0.190436 4_1:-86768558 None:intergenic
CAACATTGATAAAACTCTTT+AGG 0.224335 4_1:-86775143 None:intergenic
GAAACTTGCGGCTTCAATTT+AGG 0.227554 4_1:-86771730 Msa0581400:CDS
GACCAATCATCAAAAGGATT+TGG 0.249013 4_1:+86769323 None:intergenic
AAGAGCGACAAAATCGATTA+TGG 0.252868 4_1:+86774924 None:intergenic
CTGTCTAACGACCATTTATT+AGG 0.257471 4_1:-86769467 Msa0581400:CDS
CCAACATTTCTTGTATCTTC+TGG 0.260798 4_1:+86770843 None:intergenic
CGTAGATTCATTGGTGAAAA+AGG 0.263119 4_1:-86770468 Msa0581400:CDS
TCATGCCAAGCCTGAATTTA+CGG 0.267843 4_1:+86771378 None:intergenic
ACCAATCATCAAAAGGATTT+GGG 0.270429 4_1:+86769324 None:intergenic
ATTCCAGGTCTTCCCCTAAA+AGG 0.273733 4_1:-86771772 Msa0581400:intron
GGCTCCAATTCATGTTGTTC+TGG 0.279294 4_1:-86771654 Msa0581400:CDS
ACCTACCGACGGAGCAAGTA+TGG 0.282294 4_1:-86774389 Msa0581400:CDS
TATCACCTTTCCATTTGTTC+TGG 0.286857 4_1:-86768733 Msa0581400:three_prime_UTR
CATGGTACTATCAACATTCT+TGG 0.300598 4_1:-86768875 Msa0581400:three_prime_UTR
ATGAAGGTTGCATCTGGTTT+TGG 0.301321 4_1:-86771359 Msa0581400:CDS
CTCGATGTCGTTGTCCTTGA+AGG 0.310403 4_1:-86771578 Msa0581400:CDS
ATGATCATTTCTAGAGCTTT+GGG 0.311058 4_1:+86769430 None:intergenic
AGGAGGGAGTTGGAACATTA+GGG 0.319027 4_1:-86771439 Msa0581400:CDS
TATGATCATTTCTAGAGCTT+TGG 0.327299 4_1:+86769429 None:intergenic
GATAGAGGAGTTAGATGAAT+AGG 0.330153 4_1:-86769000 Msa0581400:exon
GACCTTCCACTAAGTCTTGC+AGG 0.335446 4_1:+86772755 None:intergenic
AAGGAGGGAGTTGGAACATT+AGG 0.344356 4_1:-86771440 Msa0581400:CDS
AGGAAAAGTGGAAGGCGAGC+AGG 0.346252 4_1:-86771678 Msa0581400:CDS
GTACCATGGACTGCACAATT+TGG 0.346447 4_1:+86768890 None:intergenic
CTTTCTTCGACTTGTGGTTA+AGG 0.348617 4_1:-86771054 Msa0581400:CDS
AGAATTGCTCTCCTGTTATA+AGG 0.349484 4_1:+86770787 None:intergenic
GTTTCTCTTTGTATTATTTG+TGG 0.350430 4_1:+86774983 None:intergenic
CATTGTTAAAATCGCCTTCA+AGG 0.369195 4_1:+86771564 None:intergenic
AGTTAGATGAATAGGTTGTT+TGG 0.375485 4_1:-86768992 Msa0581400:exon
CTTGGCATGAAGGTTGCATC+TGG 0.376451 4_1:-86771365 Msa0581400:CDS
TTGATGATTGGTCAAACAAC+AGG 0.382766 4_1:-86769313 Msa0581400:CDS
TATCCAAGCCAGGCCTTGAT+TGG 0.383278 4_1:-86769530 Msa0581400:CDS
AAAGATAACTTAGCAGTGTT+TGG 0.386742 4_1:+86774872 None:intergenic
TCAACCAGAACAACATGAAT+TGG 0.387226 4_1:+86771650 None:intergenic
AAAAGGGCCCTTGAGGGTGG+TGG 0.392097 4_1:-86774364 Msa0581400:CDS
GGTGAGCATTGCCTAATAAA+TGG 0.392285 4_1:+86769456 None:intergenic
TGATAGAGGAGAGTATTAAC+AGG 0.393310 4_1:+86768751 None:intergenic
CAGACAATTCAAGCTGGATA+AGG 0.396389 4_1:-86771403 Msa0581400:CDS
GAGCTGCGTGGCCTTATAAC+AGG 0.396907 4_1:-86770798 Msa0581400:CDS
GAAAGAGACCTTTGTTGAAC+GGG 0.397608 4_1:-86771481 Msa0581400:CDS
ATAACCATCCTCAGTATTCA+TGG 0.401476 4_1:+86769172 None:intergenic
GTATGGAGATTGGAGAAAAT+AGG 0.411051 4_1:-86771134 Msa0581400:CDS
CATGGCTTTCAAATTCCTCT+TGG 0.412910 4_1:+86771522 None:intergenic
ACAATGAAGATGATGAAGAT+TGG 0.416706 4_1:-86771547 Msa0581400:CDS
TTGTTTGGACAAATGATAGT+AGG 0.416932 4_1:-86768977 Msa0581400:three_prime_UTR
TCAACAAAGGTCTCTTTCCT+TGG 0.417676 4_1:+86771486 None:intergenic
AGAGCAGGCCTCTTTCGTTC+AGG 0.419912 4_1:+86774328 None:intergenic
TTCAATAAGCAAGAAATTTG+AGG 0.423231 4_1:+86774708 None:intergenic
TCGTCCTGGCAAAGCTGTTG+TGG 0.427546 4_1:-86769096 Msa0581400:CDS
TTAGGTCCTGCAAGACTTAG+TGG 0.427991 4_1:-86772761 Msa0581400:CDS
CTTACAACTCTACGAAGAAT+AGG 0.430379 4_1:+86773423 None:intergenic
GAGCGTGCTTTGGCGAAGTT+AGG 0.431759 4_1:-86772779 Msa0581400:CDS
ACGGAGCAAGTATGGGGAAA+AGG 0.432238 4_1:-86774381 Msa0581400:CDS
GGAAAAGTGGAAGGCGAGCA+GGG 0.434212 4_1:-86771677 Msa0581400:CDS
AATGGATTATTTGCCTGAGT+TGG 0.436962 4_1:+86774949 None:intergenic
ATCAAAATGACTCCGAGAGC+TGG 0.437216 4_1:+86769502 None:intergenic
ACTGCTAAGTTATCTTTCTC+AGG 0.443471 4_1:-86774866 Msa0581400:five_prime_UTR
GGATAAGGAGCCGTAAATTC+AGG 0.444391 4_1:-86771388 Msa0581400:CDS
TTTCCAATCAAGGCCTGGCT+TGG 0.454955 4_1:+86769527 None:intergenic
AGAGCGACAAAATCGATTAT+GGG 0.457844 4_1:+86774925 None:intergenic
GTATTATTTGTGGTCTACTC+TGG 0.457881 4_1:+86774993 None:intergenic
GAAAGTGACGGGGAGTTTAA+CGG 0.458973 4_1:+86774833 None:intergenic
ACAAAATCGATTATGGGTAA+TGG 0.459025 4_1:+86774931 None:intergenic
CTTGGCGTTCTTTCACCACA+TGG 0.459760 4_1:+86771504 None:intergenic
TTGTTTGACCAATCATCAAA+AGG 0.464007 4_1:+86769317 None:intergenic
TGGAATTTCCAATCAAGGCC+TGG 0.466762 4_1:+86769522 None:intergenic
GGGAAAAGGGCCCTTGAGGG+TGG 0.466874 4_1:-86774367 Msa0581400:CDS
CTGCATTGGGTGATGATGTA+TGG 0.466882 4_1:-86771151 Msa0581400:CDS
GATGACCTCCCATGCTGAAA+AGG 0.468471 4_1:+86769198 None:intergenic
TTGGAGAAAATAGGTAAGGA+TGG 0.469150 4_1:-86771125 Msa0581400:CDS
CGTCCTGGCAAAGCTGTTGT+GGG 0.470319 4_1:-86769095 Msa0581400:CDS
AAGCATTATCCTCCTGCATT+GGG 0.471644 4_1:-86771164 Msa0581400:CDS
CGGAGCAAGTATGGGGAAAA+GGG 0.472146 4_1:-86774380 Msa0581400:CDS
GAAAAGTGGAAGGCGAGCAG+GGG 0.473276 4_1:-86771676 Msa0581400:CDS
TGCTAAGGAAGCCGATGTAC+TGG 0.478188 4_1:+86768566 None:intergenic
ATGGGGAAAAGGGCCCTTGA+GGG 0.479275 4_1:-86774370 Msa0581400:CDS
TGAGAAGCGGGCTCAGATAG+AGG 0.479668 4_1:-86769015 Msa0581400:CDS
AGTGAAGTATTGAAGAGTAA+AGG 0.481642 4_1:+86774792 None:intergenic
AGCCGCAAGTTTCTACCATC+AGG 0.481921 4_1:+86771740 None:intergenic
TGAAGAAGTGGAGCGTGCTT+TGG 0.482538 4_1:-86772789 Msa0581400:CDS
AACAGTAAAAGCCACTGTCT+TGG 0.483889 4_1:+86771313 None:intergenic
AACAAATGGAAAGGTGATAG+AGG 0.484106 4_1:+86768737 None:intergenic
CCAGGTGTACGTAGATTCAT+TGG 0.488667 4_1:-86770477 Msa0581400:intron
CATGGACTGCACAATTTGGT+TGG 0.490718 4_1:+86768894 None:intergenic
CATTTCTAGAGCTTTGGGAT+TGG 0.490729 4_1:+86769435 None:intergenic
TCTTCCCCTAAAAGGATTGA+AGG 0.490929 4_1:-86771764 Msa0581400:CDS
GAAGCATTATCCTCCTGCAT+TGG 0.492254 4_1:-86771165 Msa0581400:CDS
AGTGGAAGTGTGGTAACATC+TGG 0.494354 4_1:-86771620 Msa0581400:CDS
ACAGAAAGCGGGAAAGTGAC+GGG 0.497033 4_1:+86774822 None:intergenic
ATAGGAGATGGCATGAATGA+TGG 0.499594 4_1:+86769143 None:intergenic
TGGTCGTTAGACAGATATAA+CGG 0.502191 4_1:+86769476 None:intergenic
AGCACAGTAGGGTTGGCTCT+TGG 0.502333 4_1:-86769407 Msa0581400:CDS
TCTCAAATCTGACAGGTGTT+CGG 0.504630 4_1:+86768688 None:intergenic
AAAGATAGCAGCTGAGAAGC+GGG 0.505005 4_1:-86769027 Msa0581400:CDS
ATTTGGGGCAGGTGGTTGCA+TGG 0.506195 4_1:+86769340 None:intergenic
GAGCGATCCTCATCGAAGTT+CGG 0.507680 4_1:+86769119 None:intergenic
TGAAGACTTTCTTCGACTTG+TGG 0.512373 4_1:-86771060 Msa0581400:CDS
CAAAGACATGTGTTCTAAGC+GGG 0.515939 4_1:-86770884 Msa0581400:CDS
GATGAGGATCGCTCTCGTCC+TGG 0.516093 4_1:-86769110 Msa0581400:CDS
GGGTGATGATGTATGGAGAT+TGG 0.516199 4_1:-86771144 Msa0581400:CDS
CATCCCACAACAGCTTTGCC+AGG 0.518586 4_1:+86769092 None:intergenic
TAAATTCAGGCTTGGCATGA+AGG 0.518982 4_1:-86771375 Msa0581400:CDS
CCAGAAGATACAAGAAATGT+TGG 0.524917 4_1:-86770843 Msa0581400:CDS
GAATAGAGGAAGAGCCAGTC+GGG 0.527053 4_1:+86771706 None:intergenic
CCCATACTTGCTCCGTCGGT+AGG 0.528831 4_1:+86774388 None:intergenic
ATGATCAGCCTGAACGAAAG+AGG 0.530138 4_1:-86774336 Msa0581400:CDS
TCTATTCACAGGAGGAAAAG+TGG 0.530836 4_1:-86771690 Msa0581400:CDS
AGAAATGATCATAGCACAGT+AGG 0.531016 4_1:-86769419 Msa0581400:CDS
CCTACCGACGGAGCAAGTAT+GGG 0.532278 4_1:-86774388 Msa0581400:CDS
AGAGCTGGAATTTCCAATCA+AGG 0.532492 4_1:+86769517 None:intergenic
TAGGAGATGGCATGAATGAT+GGG 0.538746 4_1:+86769144 None:intergenic
TGTTACCACACTTCCACTGT+TGG 0.541743 4_1:+86771625 None:intergenic
TGATTGGAAATTCCAGCTCT+CGG 0.541752 4_1:-86769514 Msa0581400:CDS
TGATCATAGCACAGTAGGGT+TGG 0.542419 4_1:-86769414 Msa0581400:CDS
GAGATTGGAGAAAATAGGTA+AGG 0.543540 4_1:-86771129 Msa0581400:CDS
GGCATACGACAATTGGGAGC+AGG 0.543575 4_1:-86770447 Msa0581400:CDS
GGTCGTTAGACAGATATAAC+GGG 0.547369 4_1:+86769477 None:intergenic
TTTACTGTTAAAGATCATAG+AGG 0.549297 4_1:-86771299 Msa0581400:CDS
GTGACACTCAAGGAGGGAGT+TGG 0.551007 4_1:-86771449 Msa0581400:CDS
GAAAGAGGCCTGCTCTTGCT+AGG 0.551299 4_1:-86774321 Msa0581400:intron
GCGGTATGTCAAACAAGATG+TGG 0.556486 4_1:-86770926 Msa0581400:CDS
TCGAAGTTCGGCATAGGAGA+TGG 0.557623 4_1:+86769131 None:intergenic
GCTTCAATTTAGGTCCCGAC+TGG 0.559550 4_1:-86771720 Msa0581400:CDS
TCATCAAAAGGATTTGGGGC+AGG 0.561538 4_1:+86769329 None:intergenic
CTGGCAAAGCTGTTGTGGGA+TGG 0.561875 4_1:-86769091 Msa0581400:CDS
CAACCAAATTGTGCAGTCCA+TGG 0.562036 4_1:-86768893 Msa0581400:three_prime_UTR
AGGAGCCGTAAATTCAGGCT+TGG 0.562655 4_1:-86771383 Msa0581400:CDS
TGCAATTCCCCGTTCAACAA+AGG 0.563578 4_1:+86771473 None:intergenic
GGAAAGAGACCTTTGTTGAA+CGG 0.564757 4_1:-86771482 Msa0581400:CDS
CATCATCTCCACCACCCTCA+AGG 0.569454 4_1:+86774356 None:intergenic
TGCTGTAAAATCAGATACAC+AGG 0.570797 4_1:+86768846 None:intergenic
CTGGCTCTTCCTCTATTCAC+AGG 0.571268 4_1:-86771701 Msa0581400:CDS
CATACATCATCACCCAATGC+AGG 0.571328 4_1:+86771152 None:intergenic
TTCTCTTAGCGATAATCAGA+AGG 0.571541 4_1:-86770754 Msa0581400:intron
AGTTATATCTCAAATCTGAC+AGG 0.574283 4_1:+86768681 None:intergenic
GAAAGATAGCAGCTGAGAAG+CGG 0.574867 4_1:-86769028 Msa0581400:CDS
GGTGACGAGGTATCCAAGCC+AGG 0.574995 4_1:-86769540 Msa0581400:CDS
AATTAGTACCTAGCAAGAGC+AGG 0.575775 4_1:+86774313 None:intergenic
AACAGAAAGCGGGAAAGTGA+CGG 0.576269 4_1:+86774821 None:intergenic
TGTAATTGTTGAAGCTCTCA+AGG 0.576695 4_1:-86773481 Msa0581400:CDS
TTTCCCCATACTTGCTCCGT+CGG 0.576968 4_1:+86774384 None:intergenic
GAAACAGGTGAGTGAAGAAG+TGG 0.579618 4_1:-86772801 Msa0581400:intron
TGTTTGACATACCGCTCCCA+AGG 0.580423 4_1:+86770934 None:intergenic
CCTTCCATGAATACTGAGGA+TGG 0.581352 4_1:-86769176 Msa0581400:CDS
AGATCAAGGCAGCAATGAGG+TGG 0.581898 4_1:-86769064 Msa0581400:CDS
TGGAGAAAATAGGTAAGGAT+GGG 0.582851 4_1:-86771124 Msa0581400:CDS
AAAACTGAAGTTGATGATTG+AGG 0.583004 4_1:+86769380 None:intergenic
AAAAGTGGAAGGCGAGCAGG+GGG 0.583445 4_1:-86771675 Msa0581400:CDS
ATACTTGCTCCGTCGGTAGG+TGG 0.585208 4_1:+86774391 None:intergenic
TCAAAAGGATTTGGGGCAGG+TGG 0.585247 4_1:+86769332 None:intergenic
GATCAAGGCAGCAATGAGGT+GGG 0.585308 4_1:-86769063 Msa0581400:CDS
TTAGAACACATGTCTTTGCA+TGG 0.587365 4_1:+86770889 None:intergenic
GTAAAAGAAACGAAGTGTAA+CGG 0.588321 4_1:+86774742 None:intergenic
GAAATGATCATAGCACAGTA+GGG 0.588957 4_1:-86769418 Msa0581400:CDS
GTGGAGTCAATTGATTATGA+TGG 0.589511 4_1:-86770347 Msa0581400:CDS
AAAAGGATTGAAGGTCCTGA+TGG 0.591187 4_1:-86771755 Msa0581400:CDS
TATTTACAGACAATTCAAGC+TGG 0.591421 4_1:-86771409 Msa0581400:CDS
TCCTCATCGAAGTTCGGCAT+AGG 0.592002 4_1:+86769125 None:intergenic
ATCTGAAAATGAACTTCATG+TGG 0.593527 4_1:-86770366 Msa0581400:CDS
TGAATAGAGGAAGAGCCAGT+CGG 0.595918 4_1:+86771705 None:intergenic
TTGGTCAAACAACAGGGACA+AGG 0.596217 4_1:-86769306 Msa0581400:CDS
TATGGGGAAAAGGGCCCTTG+AGG 0.596359 4_1:-86774371 Msa0581400:CDS
TGTGGGATGGCTGAAGATCA+AGG 0.598934 4_1:-86769078 Msa0581400:CDS
TGTGGATTGCACCAGTACAT+CGG 0.602479 4_1:-86768577 Msa0581400:three_prime_UTR
ATCATCTCCACCACCCTCAA+GGG 0.602604 4_1:+86774357 None:intergenic
GCAAAGACATGTGTTCTAAG+CGG 0.603417 4_1:-86770885 Msa0581400:CDS
CCAATCATCAAAAGGATTTG+GGG 0.604126 4_1:+86769325 None:intergenic
ACTCAATGACTTTCCAACTC+AGG 0.604793 4_1:-86774962 Msa0581400:five_prime_UTR
GTACGATGGCAAATCACTTG+TGG 0.605703 4_1:-86770417 Msa0581400:CDS
CCATCCTCAGTATTCATGGA+AGG 0.606998 4_1:+86769176 None:intergenic
CGGTATGTCAAACAAGATGT+GGG 0.611205 4_1:-86770925 Msa0581400:CDS
TCATTAACCAGAAACTGCTA+AGG 0.614827 4_1:+86768551 None:intergenic
ATCAAGGCAGCAATGAGGTG+GGG 0.619987 4_1:-86769062 Msa0581400:CDS
CGAAGTGTAACGGAGTGAGA+CGG 0.622734 4_1:+86774752 None:intergenic
TTAAGGATCAACAGAAATTG+CGG 0.629713 4_1:-86771037 Msa0581400:CDS
TTCACAGGAGGAAAAGTGGA+AGG 0.630540 4_1:-86771686 Msa0581400:CDS
TAAAACCAGAACAAATGGAA+AGG 0.632256 4_1:+86768728 None:intergenic
GAGTCAATTGATTATGATGG+CGG 0.635927 4_1:-86770344 Msa0581400:intron
TGATGATTGGTCAAACAACA+GGG 0.639296 4_1:-86769312 Msa0581400:CDS
CTACCGACGGAGCAAGTATG+GGG 0.641969 4_1:-86774387 Msa0581400:CDS
GGAGGGAGTTGGAACATTAG+GGG 0.645782 4_1:-86771438 Msa0581400:CDS
GTCCTGCAAGACTTAGTGGA+AGG 0.645964 4_1:-86772757 Msa0581400:intron
TTGCAAGTGACACTCAAGGA+GGG 0.648338 4_1:-86771455 Msa0581400:CDS
TTAATGTAGATCCTTGGGAG+CGG 0.650892 4_1:-86770945 Msa0581400:intron
TGGTCAAACAACAGGGACAA+GGG 0.651328 4_1:-86769305 Msa0581400:CDS
ACTGAAGTTGATGATTGAGG+AGG 0.651580 4_1:+86769383 None:intergenic
AAGTCGAAGAAAGTCTTCAA+CGG 0.655298 4_1:+86771064 None:intergenic
CAAGAATGTTGATAGTACCA+TGG 0.657579 4_1:+86768876 None:intergenic
ACATCATCACCCAATGCAGG+AGG 0.659507 4_1:+86771155 None:intergenic
GGAATTGCAAGTGACACTCA+AGG 0.660054 4_1:-86771459 Msa0581400:CDS
TGATGAAGATTGGAGCCAAG+AGG 0.663673 4_1:-86771537 Msa0581400:CDS
GTCCTGATGGTAGAAACTTG+CGG 0.666102 4_1:-86771742 Msa0581400:CDS
TCCTATGCCGAACTTCGATG+AGG 0.673170 4_1:-86769126 Msa0581400:CDS
CAGAAAGCGGGAAAGTGACG+GGG 0.673992 4_1:+86774823 None:intergenic
GTATCTCATTACTTCTAACG+CGG 0.674561 4_1:+86769252 None:intergenic
GCATGGAAGAGCTAGCAGCA+TGG 0.678116 4_1:+86769357 None:intergenic
AAAGAGACCTTTGTTGAACG+GGG 0.679526 4_1:-86771480 Msa0581400:CDS
GGCCACGCAGCTCATAGACG+TGG 0.680553 4_1:+86770808 None:intergenic
TGATGCCAACAGTGGAAGTG+TGG 0.681364 4_1:-86771630 Msa0581400:CDS
GCTCTTCCTCTATTCACAGG+AGG 0.683262 4_1:-86771698 Msa0581400:CDS
TTAACAATAGCATGGTGACG+AGG 0.687450 4_1:-86769553 Msa0581400:CDS
CATTCGTGAAGCCAAGACAG+TGG 0.688012 4_1:-86771324 Msa0581400:CDS
ATGCAGAGACCACCTACCGA+CGG 0.690427 4_1:-86774400 Msa0581400:CDS
GTTCTGGTTGATGCCAACAG+TGG 0.693306 4_1:-86771638 Msa0581400:CDS
TCATCCTTCCATGAATACTG+AGG 0.700726 4_1:-86769180 Msa0581400:CDS
TGAAGATCAAGGCAGCAATG+AGG 0.700972 4_1:-86769067 Msa0581400:CDS
AATTGTTGAAGCTCTCAAGG+TGG 0.705133 4_1:-86773478 Msa0581400:CDS
ATTGCAAGTGACACTCAAGG+AGG 0.711537 4_1:-86771456 Msa0581400:CDS
GAGCAGGTTGTAGAGTACGA+TGG 0.728618 4_1:-86770431 Msa0581400:CDS
AACCACGTCTATGAGCTGCG+TGG 0.733614 4_1:-86770810 Msa0581400:CDS
CATGTGGTGAAAGAACGCCA+AGG 0.747220 4_1:-86771503 Msa0581400:CDS
AGAGGAATTTGAAAGCCATG+TGG 0.749246 4_1:-86771519 Msa0581400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAAAAATAAAAAAA+AGG - chr4_1:86768669-86768688 Msa0581400:three_prime_UTR 0.0%
!! TATTTAATTATTATATTATA+TGG - chr4_1:86769208-86769227 Msa0581400:CDS 0.0%
!!! ATTATTATATTATATGGTTT+TGG - chr4_1:86769214-86769233 Msa0581400:CDS 10.0%
!! AATGAAAATTCAAATTAAAA+AGG + chr4_1:86770127-86770146 None:intergenic 10.0%
!!! TTACATTTTAAAAATTTCAT+TGG + chr4_1:86771662-86771681 None:intergenic 10.0%
!! TTCATATCAATTATATTAAT+TGG + chr4_1:86773029-86773048 None:intergenic 10.0%
!! AAAATAAAAAATGATACATT+AGG + chr4_1:86773759-86773778 None:intergenic 10.0%
!!! ATTTTTTTTAAGATTAGAGT+AGG - chr4_1:86769167-86769186 Msa0581400:CDS 15.0%
!! ATTGAAAATAAAATACTAAC+TGG + chr4_1:86769473-86769492 None:intergenic 15.0%
!!! ATTTGAATTTTCATTCTTAA+TGG - chr4_1:86770132-86770151 Msa0581400:intron 15.0%
!!! TTTTTGATTCAGTAATATTT+TGG - chr4_1:86770332-86770351 Msa0581400:intron 15.0%
!!! AACTACAAATATTTTGAAAT+TGG + chr4_1:86770994-86771013 None:intergenic 15.0%
!! ATTAAATTTAACTATGATGA+TGG + chr4_1:86771853-86771872 None:intergenic 15.0%
!! TTTGAATTACTGTATCTATT+AGG - chr4_1:86769106-86769125 Msa0581400:CDS 20.0%
!! TTGAATTACTGTATCTATTA+GGG - chr4_1:86769107-86769126 Msa0581400:CDS 20.0%
!!! TTTGTGTAATTTTGTTTTGT+AGG - chr4_1:86769248-86769267 Msa0581400:CDS 20.0%
!!! TTGTGTAATTTTGTTTTGTA+GGG - chr4_1:86769249-86769268 Msa0581400:CDS 20.0%
!! TCAACAAAAAAGATAAAGAA+GGG + chr4_1:86769833-86769852 None:intergenic 20.0%
!! TTCAACAAAAAAGATAAAGA+AGG + chr4_1:86769834-86769853 None:intergenic 20.0%
!!! ATGTGAATTTTTCTTCTTAA+TGG - chr4_1:86769858-86769877 Msa0581400:intron 20.0%
!!! ATTCAGTAATATTTTGGTTT+GGG - chr4_1:86770338-86770357 Msa0581400:intron 20.0%
!!! ACTTTTTAGTTGGAATAAAA+AGG + chr4_1:86770404-86770423 None:intergenic 20.0%
!! ACAAATACAATAAAAATGCA+TGG + chr4_1:86771048-86771067 None:intergenic 20.0%
!! TCAAAAACACAAAGATATAA+GGG + chr4_1:86771139-86771158 None:intergenic 20.0%
!! TTCAAAAACACAAAGATATA+AGG + chr4_1:86771140-86771159 None:intergenic 20.0%
!!! TATTTCTATTTAATGTCTCA+AGG + chr4_1:86771543-86771562 None:intergenic 20.0%
!!! TATTTTTAACCAGCTAATTT+AGG - chr4_1:86771561-86771580 Msa0581400:CDS 20.0%
!!! TTTACGTGTATAATTTTGAT+AGG - chr4_1:86771615-86771634 Msa0581400:CDS 20.0%
!! TTCTAATAAGTTAAAATTCC+AGG - chr4_1:86771907-86771926 Msa0581400:intron 20.0%
!!! ATATTAAAAAATGGTGTTGT+AGG + chr4_1:86772479-86772498 None:intergenic 20.0%
!! ATAAAATATAAGAAAATGGG+TGG + chr4_1:86772728-86772747 None:intergenic 20.0%
!!! TTTATTTTAATGTAGATCCT+TGG - chr4_1:86772743-86772762 Msa0581400:intron 20.0%
!!! TTATTTTAATGTAGATCCTT+GGG - chr4_1:86772744-86772763 Msa0581400:intron 20.0%
!!! TCTGATACCTTTAATTTTTT+TGG - chr4_1:86773188-86773207 Msa0581400:intron 20.0%
!!! CTGATACCTTTAATTTTTTT+GGG - chr4_1:86773189-86773208 Msa0581400:intron 20.0%
!! TTCTATTCCATTCAATTATT+TGG + chr4_1:86773477-86773496 None:intergenic 20.0%
!! TTTAAGAAATATGATAGAAC+AGG - chr4_1:86773507-86773526 Msa0581400:intron 20.0%
!! TTAAGAAATATGATAGAACA+GGG - chr4_1:86773508-86773527 Msa0581400:intron 20.0%
!!! AAAAGTATTTGTATAACTAG+GGG + chr4_1:86773627-86773646 None:intergenic 20.0%
!!! GAAAAGTATTTGTATAACTA+GGG + chr4_1:86773628-86773647 None:intergenic 20.0%
!!! AGAAAAGTATTTGTATAACT+AGG + chr4_1:86773629-86773648 None:intergenic 20.0%
! GTTTCTCTTTGTATTATTTG+TGG + chr4_1:86768714-86768733 None:intergenic 25.0%
! AAAGGAAAAATAACAGAAAG+CGG + chr4_1:86768887-86768906 None:intergenic 25.0%
! TTCAATAAGCAAGAAATTTG+AGG + chr4_1:86768989-86769008 None:intergenic 25.0%
!! TTTTCTTGACTCTAATTTCA+AGG - chr4_1:86769010-86769029 Msa0581400:CDS 25.0%
! AAATACTAACTGGACTAAAA+AGG + chr4_1:86769463-86769482 None:intergenic 25.0%
! GTAATACTCGTTATTAATGT+TGG - chr4_1:86769802-86769821 Msa0581400:intron 25.0%
! TTATGCAACGATAATCAAAA+TGG + chr4_1:86769892-86769911 None:intergenic 25.0%
! GATTGTAATAGCTATTTGAA+TGG - chr4_1:86769956-86769975 Msa0581400:intron 25.0%
! AAAACAAATAGCAGAAATCA+GGG + chr4_1:86770310-86770329 None:intergenic 25.0%
!!! GATTCAGTAATATTTTGGTT+TGG - chr4_1:86770337-86770356 Msa0581400:intron 25.0%
!!! TTCAGTAATATTTTGGTTTG+GGG - chr4_1:86770339-86770358 Msa0581400:intron 25.0%
! TTGGAAATAAAAGAACCAAA+TGG + chr4_1:86770652-86770671 None:intergenic 25.0%
!! CATTCATTTGATAATTTGTG+TGG - chr4_1:86770686-86770705 Msa0581400:intron 25.0%
! AGAAGAAATAATTCCAATCT+TGG - chr4_1:86770732-86770751 Msa0581400:intron 25.0%
!! CATTCATTTGATAATTTGTG+TGG - chr4_1:86770686-86770705 Msa0581400:intron 25.0%
! TTGATGCTCAAATAAATGAA+TGG - chr4_1:86770862-86770881 Msa0581400:CDS 25.0%
! GAAATTTATTACCTACAAGT+TGG - chr4_1:86770965-86770984 Msa0581400:intron 25.0%
! GGAGATAACACATAATTTAA+GGG + chr4_1:86771027-86771046 None:intergenic 25.0%
! TGGAGATAACACATAATTTA+AGG + chr4_1:86771028-86771047 None:intergenic 25.0%
! TTGAATCGAAATCTAATAGA+GGG + chr4_1:86771174-86771193 None:intergenic 25.0%
!!! AAGAAAGTATTAAGTTAGAG+AGG - chr4_1:86771230-86771249 Msa0581400:intron 25.0%
! TTTAGTAAAAGAAAGTAGCA+GGG + chr4_1:86771418-86771437 None:intergenic 25.0%
!! TTTTAGTAAAAGAAAGTAGC+AGG + chr4_1:86771419-86771438 None:intergenic 25.0%
!! TAATTTAGGTTCTTGCATAT+AGG - chr4_1:86771575-86771594 Msa0581400:CDS 25.0%
! TTTACTGTTAAAGATCATAG+AGG - chr4_1:86772395-86772414 Msa0581400:intron 25.0%
! CTTCTTATACACTGTATAAA+GGG + chr4_1:86772513-86772532 None:intergenic 25.0%
! GACTTTCCCAAAAAAATTAA+AGG + chr4_1:86773198-86773217 None:intergenic 25.0%
! TTAGGAACCAAATAATTGAA+TGG - chr4_1:86773467-86773486 Msa0581400:CDS 25.0%
! TAAGAAATATGATAGAACAG+GGG - chr4_1:86773509-86773528 Msa0581400:intron 25.0%
! GGAATACAATGATAAAAAAG+GGG + chr4_1:86773606-86773625 None:intergenic 25.0%
! GGGAATACAATGATAAAAAA+GGG + chr4_1:86773607-86773626 None:intergenic 25.0%
! AAATGATACATTAGGATTCA+AGG + chr4_1:86773751-86773770 None:intergenic 25.0%
! ATGTATATGCAAATTTCTCT+TGG + chr4_1:86773979-86773998 None:intergenic 25.0%
! AGAACATCAGAAAAATCTTA+AGG + chr4_1:86774755-86774774 None:intergenic 25.0%
!! ATGTTATCTCATTTTCATTG+TGG - chr4_1:86775099-86775118 Msa0581400:intron 25.0%
ACAAAATCGATTATGGGTAA+TGG + chr4_1:86768766-86768785 None:intergenic 30.0%
AAAGATAACTTAGCAGTGTT+TGG + chr4_1:86768825-86768844 None:intergenic 30.0%
AAGGAAAAATAACAGAAAGC+GGG + chr4_1:86768886-86768905 None:intergenic 30.0%
!! AGTGAAGTATTGAAGAGTAA+AGG + chr4_1:86768905-86768924 None:intergenic 30.0%
GTAAAAGAAACGAAGTGTAA+CGG + chr4_1:86768955-86768974 None:intergenic 30.0%
AATGTCCAACTTAACAATCT+CGG + chr4_1:86769567-86769586 None:intergenic 30.0%
TGATAATCCAACTGATTAGT+CGG + chr4_1:86769740-86769759 None:intergenic 30.0%
ACTAATCAGTTGGATTATCA+TGG - chr4_1:86769740-86769759 Msa0581400:intron 30.0%
AATTGACAACTGACAACAAA+AGG + chr4_1:86769771-86769790 None:intergenic 30.0%
ATATCAGAAAGAATCTTCCT+AGG + chr4_1:86769919-86769938 None:intergenic 30.0%
!!! TGGCTAGCTTTAGTTTTTTT+TGG - chr4_1:86770010-86770029 Msa0581400:intron 30.0%
!!! GGCTAGCTTTAGTTTTTTTT+GGG - chr4_1:86770011-86770030 Msa0581400:intron 30.0%
!!! ACTCGAGTTTCTTTTTTCTA+AGG - chr4_1:86770046-86770065 Msa0581400:intron 30.0%
GAAAACAAATAGCAGAAATC+AGG + chr4_1:86770311-86770330 None:intergenic 30.0%
!!! TCAGTAATATTTTGGTTTGG+GGG - chr4_1:86770340-86770359 Msa0581400:intron 30.0%
!! CGGAAAAATGACTTTTTAGT+TGG + chr4_1:86770414-86770433 None:intergenic 30.0%
!! GGTTCTTTTATTTCCAATCT+TGG - chr4_1:86770655-86770674 Msa0581400:intron 30.0%
TGAATGGTACTTATTGAAAC+AGG - chr4_1:86770878-86770897 Msa0581400:CDS 30.0%
ACTGTGTTAAGTGTTAACTA+TGG - chr4_1:86771109-86771128 Msa0581400:CDS 30.0%
TGTTAAGTGTTAACTATGGT+CGG - chr4_1:86771113-86771132 Msa0581400:CDS 30.0%
CTTGAATCGAAATCTAATAG+AGG + chr4_1:86771175-86771194 None:intergenic 30.0%
CTCTATTAGATTTCGATTCA+AGG - chr4_1:86771173-86771192 Msa0581400:CDS 30.0%
AAGTATTAAGTTAGAGAGGT+AGG - chr4_1:86771234-86771253 Msa0581400:intron 30.0%
TTTGTAGTTTCATTGTTGGT+TGG + chr4_1:86771277-86771296 None:intergenic 30.0%
AACCAACAATGAAACTACAA+AGG - chr4_1:86771276-86771295 Msa0581400:intron 30.0%
!! CAAAGGCATTTCTATTTCAA+AGG - chr4_1:86771293-86771312 Msa0581400:intron 30.0%
TTCTATTTCAAAGGATGATG+TGG - chr4_1:86771302-86771321 Msa0581400:CDS 30.0%
TTAATGTCTCAAGGAAATCA+GGG + chr4_1:86771534-86771553 None:intergenic 30.0%
TTTAATGTCTCAAGGAAATC+AGG + chr4_1:86771535-86771554 None:intergenic 30.0%
!! CGTGTATAATTTTGATAGGA+TGG - chr4_1:86771619-86771638 Msa0581400:CDS 30.0%
!! AATTTTGATAGGATGGACAT+TGG - chr4_1:86771626-86771645 Msa0581400:CDS 30.0%
TAAAGTGTACAGTAAGTCAT+TGG - chr4_1:86771740-86771759 Msa0581400:CDS 30.0%
TAAGAAGAAACTACGTGTTA+AGG - chr4_1:86771773-86771792 Msa0581400:intron 30.0%
!! TCGAGTTTTATACATGATTC+AGG + chr4_1:86772101-86772120 None:intergenic 30.0%
ACAATGAAGATGATGAAGAT+TGG - chr4_1:86772147-86772166 Msa0581400:intron 30.0%
TATTTACAGACAATTCAAGC+TGG - chr4_1:86772285-86772304 Msa0581400:intron 30.0%
GCTTCTTATACACTGTATAA+AGG + chr4_1:86772514-86772533 None:intergenic 30.0%
CACAAAAAGTTGAATAATGC+TGG - chr4_1:86772599-86772618 Msa0581400:intron 30.0%
TTAAGGATCAACAGAAATTG+CGG - chr4_1:86772657-86772676 Msa0581400:intron 30.0%
AAATTGCGGAATGTAAGTTT+AGG - chr4_1:86772671-86772690 Msa0581400:intron 30.0%
TCCATCTTTATCTTGAATGT+AGG - chr4_1:86772697-86772716 Msa0581400:intron 30.0%
ACCTACATTCAAGATAAAGA+TGG + chr4_1:86772701-86772720 None:intergenic 30.0%
AATATAAGAAAATGGGTGGA+AGG + chr4_1:86772724-86772743 None:intergenic 30.0%
ACTTTCAATGGAAAAAATGC+AGG + chr4_1:86772977-86772996 None:intergenic 30.0%
! AATCAGAAAAGTGCATACTA+TGG - chr4_1:86773104-86773123 Msa0581400:intron 30.0%
AAACTACAAACTCTGAACAT+TGG + chr4_1:86773134-86773153 None:intergenic 30.0%
!!! TAATTTTTTTGGGAAAGTCC+AGG - chr4_1:86773199-86773218 Msa0581400:intron 30.0%
ATCTGAAAATGAACTTCATG+TGG - chr4_1:86773328-86773347 Msa0581400:intron 30.0%
GGGGAATACAATGATAAAAA+AGG + chr4_1:86773608-86773627 None:intergenic 30.0%
! AGAAAACAAATTTGAGACAC+AGG + chr4_1:86773853-86773872 None:intergenic 30.0%
! TCCATATACATTTTCCTTTC+AGG - chr4_1:86774116-86774135 Msa0581400:intron 30.0%
ACCTGAAAGGAAAATGTATA+TGG + chr4_1:86774120-86774139 None:intergenic 30.0%
TGCTATTGTTAAAACCTGAA+AGG + chr4_1:86774133-86774152 None:intergenic 30.0%
!! TTCAGGTTTTAACAATAGCA+TGG - chr4_1:86774133-86774152 Msa0581400:intron 30.0%
!! ATGATCATTTCTAGAGCTTT+GGG + chr4_1:86774267-86774286 None:intergenic 30.0%
!! TATGATCATTTCTAGAGCTT+TGG + chr4_1:86774268-86774287 None:intergenic 30.0%
!! AAAACTGAAGTTGATGATTG+AGG + chr4_1:86774317-86774336 None:intergenic 30.0%
ACCAATCATCAAAAGGATTT+GGG + chr4_1:86774373-86774392 None:intergenic 30.0%
TTGTTTGACCAATCATCAAA+AGG + chr4_1:86774380-86774399 None:intergenic 30.0%
AGTTAGATGAATAGGTTGTT+TGG - chr4_1:86774702-86774721 Msa0581400:five_prime_UTR 30.0%
TTGTTTGGACAAATGATAGT+AGG - chr4_1:86774717-86774736 Msa0581400:five_prime_UTR 30.0%
TCAAAAACAGATTACAATCG+CGG + chr4_1:86774919-86774938 None:intergenic 30.0%
TAAAACCAGAACAAATGGAA+AGG + chr4_1:86774969-86774988 None:intergenic 30.0%
!!! TTTCCATTTGTTCTGGTTTT+AGG - chr4_1:86774968-86774987 Msa0581400:five_prime_UTR 30.0%
!!! TTCCATTTGTTCTGGTTTTA+GGG - chr4_1:86774969-86774988 Msa0581400:five_prime_UTR 30.0%
AGTTATATCTCAAATCTGAC+AGG + chr4_1:86775016-86775035 None:intergenic 30.0%
AATATCTCTACGTGCAATCA+CGG + chr4_1:86768624-86768643 None:intergenic 35.0%
GTATTATTTGTGGTCTACTC+TGG + chr4_1:86768704-86768723 None:intergenic 35.0%
!! AATGGATTATTTGCCTGAGT+TGG + chr4_1:86768748-86768767 None:intergenic 35.0%
AGAGCGACAAAATCGATTAT+GGG + chr4_1:86768772-86768791 None:intergenic 35.0%
AAGAGCGACAAAATCGATTA+TGG + chr4_1:86768773-86768792 None:intergenic 35.0%
ACTGCTAAGTTATCTTTCTC+AGG - chr4_1:86768828-86768847 Msa0581400:three_prime_UTR 35.0%
! AGTGAGACGGAGATATTTTA+TGG + chr4_1:86768932-86768951 None:intergenic 35.0%
AAGATTAGAGTAGGTGATGA+TGG - chr4_1:86769176-86769195 Msa0581400:CDS 35.0%
CAATACCGAGATTGTTAAGT+TGG - chr4_1:86769559-86769578 Msa0581400:CDS 35.0%
!! GTTAAGTTGGACATTTGTTG+TGG - chr4_1:86769572-86769591 Msa0581400:intron 35.0%
TGAAAACTCACACACACAAA+GGG + chr4_1:86769624-86769643 None:intergenic 35.0%
TTGAAAACTCACACACACAA+AGG + chr4_1:86769625-86769644 None:intergenic 35.0%
TTAATGACCGACTAATCAGT+TGG - chr4_1:86769730-86769749 Msa0581400:intron 35.0%
CAACTATGGAATTCTGCATT+TGG - chr4_1:86769990-86770009 Msa0581400:intron 35.0%
TGTAATTGTTGAAGCTCTCA+AGG - chr4_1:86770213-86770232 Msa0581400:intron 35.0%
CTTACAACTCTACGAAGAAT+AGG + chr4_1:86770274-86770293 None:intergenic 35.0%
!!! TAATATTTTGGTTTGGGGGT+GGG - chr4_1:86770344-86770363 Msa0581400:intron 35.0%
GTTTAAGAAGGGACATTATG+CGG + chr4_1:86770434-86770453 None:intergenic 35.0%
TATGACATGGCGTTTAAGAA+GGG + chr4_1:86770445-86770464 None:intergenic 35.0%
ATATGACATGGCGTTTAAGA+AGG + chr4_1:86770446-86770465 None:intergenic 35.0%
TTAAACGCCATGTCATATAG+TGG - chr4_1:86770448-86770467 Msa0581400:CDS 35.0%
! TTTGATTTCAGTGCTCCATT+TGG - chr4_1:86770634-86770653 Msa0581400:intron 35.0%
! GAAATTGGTTTCCAACTTGT+AGG + chr4_1:86770979-86770998 None:intergenic 35.0%
ATTTGTCCATAGACTAAGCA+AGG - chr4_1:86771062-86771081 Msa0581400:CDS 35.0%
! ATCCTTTAAGCTAGCTTGAA+AGG - chr4_1:86771205-86771224 Msa0581400:intron 35.0%
TGCCTTTGTAGTTTCATTGT+TGG + chr4_1:86771281-86771300 None:intergenic 35.0%
ACACCACATTCTTTCTTTGT+CGG - chr4_1:86771377-86771396 Msa0581400:CDS 35.0%
ATGCAAGAACCTAAATTAGC+TGG + chr4_1:86771573-86771592 None:intergenic 35.0%
CTTACTGTACACTTTAAGCT+AGG + chr4_1:86771736-86771755 None:intergenic 35.0%
! GATGATGGCATTAATTGAAG+TGG + chr4_1:86771838-86771857 None:intergenic 35.0%
ATTTAATTCATTGGCGAGTC+TGG - chr4_1:86771877-86771896 Msa0581400:intron 35.0%
TCAACCAGAACAACATGAAT+TGG + chr4_1:86772047-86772066 None:intergenic 35.0%
CATTGTTAAAATCGCCTTCA+AGG + chr4_1:86772133-86772152 None:intergenic 35.0%
AAGATCATAGAGGAGAATGT+AGG - chr4_1:86772405-86772424 Msa0581400:intron 35.0%
AGATCATAGAGGAGAATGTA+GGG - chr4_1:86772406-86772425 Msa0581400:intron 35.0%
GAGATTGGAGAAAATAGGTA+AGG - chr4_1:86772565-86772584 Msa0581400:intron 35.0%
TTGGAGAAAATAGGTAAGGA+TGG - chr4_1:86772569-86772588 Msa0581400:intron 35.0%
TGGAGAAAATAGGTAAGGAT+GGG - chr4_1:86772570-86772589 Msa0581400:intron 35.0%
AAGTCGAAGAAAGTCTTCAA+CGG + chr4_1:86772633-86772652 None:intergenic 35.0%
TTAGAACACATGTCTTTGCA+TGG + chr4_1:86772808-86772827 None:intergenic 35.0%
CCAACATTTCTTGTATCTTC+TGG + chr4_1:86772854-86772873 None:intergenic 35.0%
CCAGAAGATACAAGAAATGT+TGG - chr4_1:86772851-86772870 Msa0581400:intron 35.0%
AGAATTGCTCTCCTGTTATA+AGG + chr4_1:86772910-86772929 None:intergenic 35.0%
TTCTCTTAGCGATAATCAGA+AGG - chr4_1:86772940-86772959 Msa0581400:intron 35.0%
AACACATGCTCAACTTTCAA+TGG + chr4_1:86772989-86773008 None:intergenic 35.0%
!! TTCCTTTGAAGCTCTCTATT+AGG - chr4_1:86773152-86773171 Msa0581400:intron 35.0%
TTCCTAATAGAGAGCTTCAA+AGG + chr4_1:86773157-86773176 None:intergenic 35.0%
TGAAGCTCTCTATTAGGAAT+AGG - chr4_1:86773158-86773177 Msa0581400:intron 35.0%
GAAGCTCTCTATTAGGAATA+GGG - chr4_1:86773159-86773178 Msa0581400:intron 35.0%
CGTAGATTCATTGGTGAAAA+AGG - chr4_1:86773226-86773245 Msa0581400:intron 35.0%
! TGAAAAAGGCATACGACAAT+TGG - chr4_1:86773240-86773259 Msa0581400:intron 35.0%
! GAAAAAGGCATACGACAATT+GGG - chr4_1:86773241-86773260 Msa0581400:intron 35.0%
GTGGAGTCAATTGATTATGA+TGG - chr4_1:86773347-86773366 Msa0581400:intron 35.0%
GAGTCAATTGATTATGATGG+CGG - chr4_1:86773350-86773369 Msa0581400:intron 35.0%
TGTTCAGAAGTAACAGACAT+GGG + chr4_1:86773407-86773426 None:intergenic 35.0%
! AGAGTATTCTCTACTGTGAA+GGG + chr4_1:86773558-86773577 None:intergenic 35.0%
! TAGAGTATTCTCTACTGTGA+AGG + chr4_1:86773559-86773578 None:intergenic 35.0%
TATGCAAATTTCTCTTGGAC+AGG + chr4_1:86773974-86773993 None:intergenic 35.0%
ACATCATACACAATCAGCAA+AGG + chr4_1:86774035-86774054 None:intergenic 35.0%
ACATCATACACAATCAGCAA+AGG + chr4_1:86774035-86774054 None:intergenic 35.0%
TGGTCGTTAGACAGATATAA+CGG + chr4_1:86774221-86774240 None:intergenic 35.0%
CTGTCTAACGACCATTTATT+AGG - chr4_1:86774227-86774246 Msa0581400:intron 35.0%
AGAAATGATCATAGCACAGT+AGG - chr4_1:86774275-86774294 Msa0581400:intron 35.0%
GAAATGATCATAGCACAGTA+GGG - chr4_1:86774276-86774295 Msa0581400:intron 35.0%
CCAATCATCAAAAGGATTTG+GGG + chr4_1:86774372-86774391 None:intergenic 35.0%
GACCAATCATCAAAAGGATT+TGG + chr4_1:86774374-86774393 None:intergenic 35.0%
! TTGATGATTGGTCAAACAAC+AGG - chr4_1:86774381-86774400 Msa0581400:CDS 35.0%
! TGATGATTGGTCAAACAACA+GGG - chr4_1:86774382-86774401 Msa0581400:CDS 35.0%
!!! TGTTGATGACTTCTTTTCAG+AGG - chr4_1:86774412-86774431 Msa0581400:exon 35.0%
GTATCTCATTACTTCTAACG+CGG + chr4_1:86774445-86774464 None:intergenic 35.0%
ATAACCATCCTCAGTATTCA+TGG + chr4_1:86774525-86774544 None:intergenic 35.0%
GATAGAGGAGTTAGATGAAT+AGG - chr4_1:86774694-86774713 Msa0581400:five_prime_UTR 35.0%
!! CAAGAATGTTGATAGTACCA+TGG + chr4_1:86774821-86774840 None:intergenic 35.0%
CATGGTACTATCAACATTCT+TGG - chr4_1:86774819-86774838 Msa0581400:five_prime_UTR 35.0%
TGCTGTAAAATCAGATACAC+AGG + chr4_1:86774851-86774870 None:intergenic 35.0%
!!! GTACAGTTTTGTTCAAGCTT+AGG - chr4_1:86774888-86774907 Msa0581400:five_prime_UTR 35.0%
!! TGATAGAGGAGAGTATTAAC+AGG + chr4_1:86774946-86774965 None:intergenic 35.0%
AACAAATGGAAAGGTGATAG+AGG + chr4_1:86774960-86774979 None:intergenic 35.0%
TATCACCTTTCCATTTGTTC+TGG - chr4_1:86774961-86774980 Msa0581400:five_prime_UTR 35.0%
!!! TCCATTTGTTCTGGTTTTAG+GGG - chr4_1:86774970-86774989 Msa0581400:five_prime_UTR 35.0%
ACTCAATGACTTTCCAACTC+AGG - chr4_1:86768732-86768751 Msa0581400:three_prime_UTR 40.0%
! GAGACGGAGATATTTTATGG+TGG + chr4_1:86768929-86768948 None:intergenic 40.0%
AATTAGTACCTAGCAAGAGC+AGG + chr4_1:86769384-86769403 None:intergenic 40.0%
GGAAGTAAACAGTTCCAACT+GGG + chr4_1:86769668-86769687 None:intergenic 40.0%
TGGAAGTAAACAGTTCCAAC+TGG + chr4_1:86769669-86769688 None:intergenic 40.0%
CCAACACGACAAAACATCTT+TGG + chr4_1:86769689-86769708 None:intergenic 40.0%
! CCAAAGATGTTTTGTCGTGT+TGG - chr4_1:86769686-86769705 Msa0581400:intron 40.0%
TATCGTTGCATAATGCACCT+AGG - chr4_1:86769899-86769918 Msa0581400:intron 40.0%
GCTATTTGAATGGCATAGCA+TGG - chr4_1:86769966-86769985 Msa0581400:intron 40.0%
AATTGTTGAAGCTCTCAAGG+TGG - chr4_1:86770216-86770235 Msa0581400:intron 40.0%
!!! GTAATATTTTGGTTTGGGGG+TGG - chr4_1:86770343-86770362 Msa0581400:intron 40.0%
!!! AATATTTTGGTTTGGGGGTG+GGG - chr4_1:86770345-86770364 Msa0581400:CDS 40.0%
CCATGTCATATAGTGGTCTT+CGG - chr4_1:86770455-86770474 Msa0581400:CDS 40.0%
ACTGTCATGCTGTGAACAAT+AGG + chr4_1:86770599-86770618 None:intergenic 40.0%
GAATGATGTCACACCAAGAT+TGG + chr4_1:86770671-86770690 None:intergenic 40.0%
GAATGATGTCACACCAAGAT+TGG + chr4_1:86770671-86770690 None:intergenic 40.0%
TTGCAACCTTGCTTAGTCTA+TGG + chr4_1:86771071-86771090 None:intergenic 40.0%
! CTCCTTTCAAGCTAGCTTAA+AGG + chr4_1:86771210-86771229 None:intergenic 40.0%
ATGCCGACAAAGAAAGAATG+TGG + chr4_1:86771383-86771402 None:intergenic 40.0%
TCTTCCCCTAAAAGGATTGA+AGG - chr4_1:86771930-86771949 Msa0581400:intron 40.0%
! AGGACCTTCAATCCTTTTAG+GGG + chr4_1:86771937-86771956 None:intergenic 40.0%
! CAGGACCTTCAATCCTTTTA+GGG + chr4_1:86771938-86771957 None:intergenic 40.0%
! TCAGGACCTTCAATCCTTTT+AGG + chr4_1:86771939-86771958 None:intergenic 40.0%
AAAAGGATTGAAGGTCCTGA+TGG - chr4_1:86771939-86771958 Msa0581400:intron 40.0%
GAAACTTGCGGCTTCAATTT+AGG - chr4_1:86771964-86771983 Msa0581400:intron 40.0%
! ACTTTTCCTCCTGTGAATAG+AGG + chr4_1:86772005-86772024 None:intergenic 40.0%
TCTATTCACAGGAGGAAAAG+TGG - chr4_1:86772004-86772023 Msa0581400:intron 40.0%
CATGGCTTTCAAATTCCTCT+TGG + chr4_1:86772175-86772194 None:intergenic 40.0%
AGAGGAATTTGAAAGCCATG+TGG - chr4_1:86772175-86772194 Msa0581400:intron 40.0%
TCAACAAAGGTCTCTTTCCT+TGG + chr4_1:86772211-86772230 None:intergenic 40.0%
GGAAAGAGACCTTTGTTGAA+CGG - chr4_1:86772212-86772231 Msa0581400:intron 40.0%
GAAAGAGACCTTTGTTGAAC+GGG - chr4_1:86772213-86772232 Msa0581400:intron 40.0%
AAAGAGACCTTTGTTGAACG+GGG - chr4_1:86772214-86772233 Msa0581400:intron 40.0%
CAGACAATTCAAGCTGGATA+AGG - chr4_1:86772291-86772310 Msa0581400:intron 40.0%
TCATGCCAAGCCTGAATTTA+CGG + chr4_1:86772319-86772338 None:intergenic 40.0%
TAAATTCAGGCTTGGCATGA+AGG - chr4_1:86772319-86772338 Msa0581400:intron 40.0%
!! ATGAAGGTTGCATCTGGTTT+TGG - chr4_1:86772335-86772354 Msa0581400:intron 40.0%
AACAGTAAAAGCCACTGTCT+TGG + chr4_1:86772384-86772403 None:intergenic 40.0%
!! AGAAGGGAAAGCATTGAAGT+TGG + chr4_1:86772451-86772470 None:intergenic 40.0%
AAGCATTATCCTCCTGCATT+GGG - chr4_1:86772530-86772549 Msa0581400:intron 40.0%
! TGAAGACTTTCTTCGACTTG+TGG - chr4_1:86772634-86772653 Msa0581400:intron 40.0%
! CTTTCTTCGACTTGTGGTTA+AGG - chr4_1:86772640-86772659 Msa0581400:intron 40.0%
TTAATGTAGATCCTTGGGAG+CGG - chr4_1:86772749-86772768 Msa0581400:intron 40.0%
CGGTATGTCAAACAAGATGT+GGG - chr4_1:86772769-86772788 Msa0581400:CDS 40.0%
! GCAAAGACATGTGTTCTAAG+CGG - chr4_1:86772809-86772828 Msa0581400:intron 40.0%
! CAAAGACATGTGTTCTAAGC+GGG - chr4_1:86772810-86772829 Msa0581400:intron 40.0%
TGAGCATGTGTTTATGTTGC+TGG - chr4_1:86772997-86773016 Msa0581400:intron 40.0%
GTTCAGAAGTAACAGACATG+GGG + chr4_1:86773406-86773425 None:intergenic 40.0%
CTGTTCAGAAGTAACAGACA+TGG + chr4_1:86773408-86773427 None:intergenic 40.0%
ATTAATTCAGCGATGCCAGT+TGG - chr4_1:86773431-86773450 Msa0581400:CDS 40.0%
GAGTATTCTCTACTGTGAAG+GGG + chr4_1:86773557-86773576 None:intergenic 40.0%
AGGAAACAGAAACGCTGTTA+GGG + chr4_1:86773731-86773750 None:intergenic 40.0%
AAGGAAACAGAAACGCTGTT+AGG + chr4_1:86773732-86773751 None:intergenic 40.0%
TCAAAAGAAAAGGAGAAGGG+AGG + chr4_1:86773809-86773828 None:intergenic 40.0%
CGCTCAAAAGAAAAGGAGAA+GGG + chr4_1:86773812-86773831 None:intergenic 40.0%
TCGCTCAAAAGAAAAGGAGA+AGG + chr4_1:86773813-86773832 None:intergenic 40.0%
GTGACATCGCTCAAAAGAAA+AGG + chr4_1:86773819-86773838 None:intergenic 40.0%
! TTAACAATAGCATGGTGACG+AGG - chr4_1:86774141-86774160 Msa0581400:intron 40.0%
AGAGCTGGAATTTCCAATCA+AGG + chr4_1:86774180-86774199 None:intergenic 40.0%
TGATTGGAAATTCCAGCTCT+CGG - chr4_1:86774180-86774199 Msa0581400:intron 40.0%
GGTCGTTAGACAGATATAAC+GGG + chr4_1:86774220-86774239 None:intergenic 40.0%
! GGTGAGCATTGCCTAATAAA+TGG + chr4_1:86774241-86774260 None:intergenic 40.0%
!! CATTTCTAGAGCTTTGGGAT+TGG + chr4_1:86774262-86774281 None:intergenic 40.0%
!! ACTGAAGTTGATGATTGAGG+AGG + chr4_1:86774314-86774333 None:intergenic 40.0%
!! CCCCAAATCCTTTTGATGAT+TGG - chr4_1:86774369-86774388 Msa0581400:CDS 40.0%
TCATCCTTCCATGAATACTG+AGG - chr4_1:86774514-86774533 Msa0581400:intron 40.0%
TAGGAGATGGCATGAATGAT+GGG + chr4_1:86774553-86774572 None:intergenic 40.0%
ATAGGAGATGGCATGAATGA+TGG + chr4_1:86774554-86774573 None:intergenic 40.0%
!!! CCATTTGTTCTGGTTTTAGG+GGG - chr4_1:86774971-86774990 Msa0581400:five_prime_UTR 40.0%
TCTCAAATCTGACAGGTGTT+CGG + chr4_1:86775009-86775028 None:intergenic 40.0%
! GAAAGTGACGGGGAGTTTAA+CGG + chr4_1:86768864-86768883 None:intergenic 45.0%
AACAGAAAGCGGGAAAGTGA+CGG + chr4_1:86768876-86768895 None:intergenic 45.0%
ATGATCAGCCTGAACGAAAG+AGG - chr4_1:86769358-86769377 Msa0581400:CDS 45.0%
!! GGACATTTGTTGTGGTTACC+CGG - chr4_1:86769580-86769599 Msa0581400:intron 45.0%
!! GACATTTGTTGTGGTTACCC+GGG - chr4_1:86769581-86769600 Msa0581400:intron 45.0%
AGGATCTTAGATTCGATCCC+GGG + chr4_1:86769601-86769620 None:intergenic 45.0%
GAGGATCTTAGATTCGATCC+CGG + chr4_1:86769602-86769621 None:intergenic 45.0%
AAACTCACACACACAAAGGG+AGG + chr4_1:86769621-86769640 None:intergenic 45.0%
CTACTCTACTGTATCCCAGT+TGG - chr4_1:86769651-86769670 Msa0581400:intron 45.0%
TGGCATAGCATGGTCAACTA+TGG - chr4_1:86769976-86769995 Msa0581400:intron 45.0%
!!! ATATTTTGGTTTGGGGGTGG+GGG - chr4_1:86770346-86770365 Msa0581400:CDS 45.0%
CCGAAGACCACTATATGACA+TGG + chr4_1:86770458-86770477 None:intergenic 45.0%
GAAACAGGTGAGTGAAGAAG+TGG - chr4_1:86770893-86770912 Msa0581400:CDS 45.0%
TTAGGTCCTGCAAGACTTAG+TGG - chr4_1:86770933-86770952 Msa0581400:CDS 45.0%
GGTAGGTATCCTGTAGAAAG+AGG - chr4_1:86771251-86771270 Msa0581400:intron 45.0%
AAGAAAGTAGCAGGGTCTTG+TGG + chr4_1:86771410-86771429 None:intergenic 45.0%
ATGTCTCAAGGAAATCAGGG+AGG + chr4_1:86771531-86771550 None:intergenic 45.0%
TAGGCTCAAATCGGAGAATG+GGG + chr4_1:86771709-86771728 None:intergenic 45.0%
GTAGGCTCAAATCGGAGAAT+GGG + chr4_1:86771710-86771729 None:intergenic 45.0%
ACACTTTAAGCTAGGCAGGT+AGG + chr4_1:86771728-86771747 None:intergenic 45.0%
CTGTACACTTTAAGCTAGGC+AGG + chr4_1:86771732-86771751 None:intergenic 45.0%
ATTCCAGGTCTTCCCCTAAA+AGG - chr4_1:86771922-86771941 Msa0581400:intron 45.0%
!! AATCCTTTTAGGGGAAGACC+TGG + chr4_1:86771928-86771947 None:intergenic 45.0%
GTCCTGATGGTAGAAACTTG+CGG - chr4_1:86771952-86771971 Msa0581400:intron 45.0%
TGAATAGAGGAAGAGCCAGT+CGG + chr4_1:86771992-86772011 None:intergenic 45.0%
TTCACAGGAGGAAAAGTGGA+AGG - chr4_1:86772008-86772027 Msa0581400:intron 45.0%
GGCTCCAATTCATGTTGTTC+TGG - chr4_1:86772040-86772059 Msa0581400:intron 45.0%
TGTTACCACACTTCCACTGT+TGG + chr4_1:86772072-86772091 None:intergenic 45.0%
! AGTGGAAGTGTGGTAACATC+TGG - chr4_1:86772074-86772093 Msa0581400:intron 45.0%
TGATGAAGATTGGAGCCAAG+AGG - chr4_1:86772157-86772176 Msa0581400:intron 45.0%
TGCAATTCCCCGTTCAACAA+AGG + chr4_1:86772224-86772243 None:intergenic 45.0%
GGAATTGCAAGTGACACTCA+AGG - chr4_1:86772235-86772254 Msa0581400:intron 45.0%
ATTGCAAGTGACACTCAAGG+AGG - chr4_1:86772238-86772257 Msa0581400:intron 45.0%
TTGCAAGTGACACTCAAGGA+GGG - chr4_1:86772239-86772258 Msa0581400:intron 45.0%
AAGGAGGGAGTTGGAACATT+AGG - chr4_1:86772254-86772273 Msa0581400:intron 45.0%
AGGAGGGAGTTGGAACATTA+GGG - chr4_1:86772255-86772274 Msa0581400:intron 45.0%
GGATAAGGAGCCGTAAATTC+AGG - chr4_1:86772306-86772325 Msa0581400:intron 45.0%
! GGTGTTGTAGGTTGCAAGAA+GGG + chr4_1:86772467-86772486 None:intergenic 45.0%
!! TGGTGTTGTAGGTTGCAAGA+AGG + chr4_1:86772468-86772487 None:intergenic 45.0%
! GAAGCATTATCCTCCTGCAT+TGG - chr4_1:86772529-86772548 Msa0581400:intron 45.0%
GCGGTATGTCAAACAAGATG+TGG - chr4_1:86772768-86772787 Msa0581400:CDS 45.0%
CCAATGAATCTACGTACACC+TGG + chr4_1:86773220-86773239 None:intergenic 45.0%
CCAGGTGTACGTAGATTCAT+TGG - chr4_1:86773217-86773236 Msa0581400:intron 45.0%
GTACGATGGCAAATCACTTG+TGG - chr4_1:86773277-86773296 Msa0581400:intron 45.0%
AGAAGTAACAGACATGGGGA+GGG + chr4_1:86773402-86773421 None:intergenic 45.0%
AACAATCGCTTACCTCCAAC+TGG + chr4_1:86773449-86773468 None:intergenic 45.0%
GTTGGAGGTAAGCGATTGTT+AGG - chr4_1:86773449-86773468 Msa0581400:CDS 45.0%
TGGAATTTCCAATCAAGGCC+TGG + chr4_1:86774175-86774194 None:intergenic 45.0%
ATCAAAATGACTCCGAGAGC+TGG + chr4_1:86774195-86774214 None:intergenic 45.0%
TGATCATAGCACAGTAGGGT+TGG - chr4_1:86774280-86774299 Msa0581400:intron 45.0%
! TCATCAAAAGGATTTGGGGC+AGG + chr4_1:86774368-86774387 None:intergenic 45.0%
TTGGTCAAACAACAGGGACA+AGG - chr4_1:86774388-86774407 Msa0581400:CDS 45.0%
TGGTCAAACAACAGGGACAA+GGG - chr4_1:86774389-86774408 Msa0581400:CDS 45.0%
! TTGCTTCGCCTTTTCAGCAT+GGG - chr4_1:86774488-86774507 Msa0581400:intron 45.0%
CCATCCTCAGTATTCATGGA+AGG + chr4_1:86774521-86774540 None:intergenic 45.0%
CCTTCCATGAATACTGAGGA+TGG - chr4_1:86774518-86774537 Msa0581400:intron 45.0%
TGAAGATCAAGGCAGCAATG+AGG - chr4_1:86774627-86774646 Msa0581400:intron 45.0%
GAAAGATAGCAGCTGAGAAG+CGG - chr4_1:86774666-86774685 Msa0581400:intron 45.0%
AAAGATAGCAGCTGAGAAGC+GGG - chr4_1:86774667-86774686 Msa0581400:intron 45.0%
! CATGGACTGCACAATTTGGT+TGG + chr4_1:86774803-86774822 None:intergenic 45.0%
CAACCAAATTGTGCAGTCCA+TGG - chr4_1:86774801-86774820 Msa0581400:five_prime_UTR 45.0%
! GTACCATGGACTGCACAATT+TGG + chr4_1:86774807-86774826 None:intergenic 45.0%
CCCCCTAAAACCAGAACAAA+TGG + chr4_1:86774974-86774993 None:intergenic 45.0%
! TGTGGATTGCACCAGTACAT+CGG - chr4_1:86775117-86775136 Msa0581400:intron 45.0%
!! TTAATTTAAATTTAATTCAT+TGG - chr4_1:86771868-86771887 Msa0581400:intron 5.0%
!! AAAAATAAGATATTAAAAAA+TGG + chr4_1:86772488-86772507 None:intergenic 5.0%
!! AAAATAAAATATAAGAAAAT+GGG + chr4_1:86772731-86772750 None:intergenic 5.0%
!! TAAAATAAAATATAAGAAAA+TGG + chr4_1:86772732-86772751 None:intergenic 5.0%
!!! TTTAAAATATTTTTAGTATT+TGG + chr4_1:86773943-86773962 None:intergenic 5.0%
ACAGAAAGCGGGAAAGTGAC+GGG + chr4_1:86768875-86768894 None:intergenic 50.0%
! CGAAGTGTAACGGAGTGAGA+CGG + chr4_1:86768945-86768964 None:intergenic 50.0%
TTTCCCCATACTTGCTCCGT+CGG + chr4_1:86769313-86769332 None:intergenic 50.0%
ACGGAGCAAGTATGGGGAAA+AGG - chr4_1:86769313-86769332 Msa0581400:CDS 50.0%
CGGAGCAAGTATGGGGAAAA+GGG - chr4_1:86769314-86769333 Msa0581400:CDS 50.0%
ATCATCTCCACCACCCTCAA+GGG + chr4_1:86769340-86769359 None:intergenic 50.0%
TCGGTATTGTCAGCTGAGCT+AGG + chr4_1:86769548-86769567 None:intergenic 50.0%
TGAAGAAGTGGAGCGTGCTT+TGG - chr4_1:86770905-86770924 Msa0581400:CDS 50.0%
GTCCTGCAAGACTTAGTGGA+AGG - chr4_1:86770937-86770956 Msa0581400:CDS 50.0%
GACCTTCCACTAAGTCTTGC+AGG + chr4_1:86770942-86770961 None:intergenic 50.0%
!! GTTGGTTGGCCTCTTTCTAC+AGG + chr4_1:86771263-86771282 None:intergenic 50.0%
GGAAATCAGGGAGGCAGTAT+TGG + chr4_1:86771522-86771541 None:intergenic 50.0%
GGTAGGCTCAAATCGGAGAA+TGG + chr4_1:86771711-86771730 None:intergenic 50.0%
CTAGGCAGGTAGGCTCAAAT+CGG + chr4_1:86771718-86771737 None:intergenic 50.0%
AGCCGCAAGTTTCTACCATC+AGG + chr4_1:86771957-86771976 None:intergenic 50.0%
GCTTCAATTTAGGTCCCGAC+TGG - chr4_1:86771974-86771993 Msa0581400:intron 50.0%
GAATAGAGGAAGAGCCAGTC+GGG + chr4_1:86771991-86772010 None:intergenic 50.0%
! CTGGCTCTTCCTCTATTCAC+AGG - chr4_1:86771993-86772012 Msa0581400:intron 50.0%
GCTCTTCCTCTATTCACAGG+AGG - chr4_1:86771996-86772015 Msa0581400:intron 50.0%
! GTTCTGGTTGATGCCAACAG+TGG - chr4_1:86772056-86772075 Msa0581400:intron 50.0%
TGATGCCAACAGTGGAAGTG+TGG - chr4_1:86772064-86772083 Msa0581400:intron 50.0%
CTCGATGTCGTTGTCCTTGA+AGG - chr4_1:86772116-86772135 Msa0581400:intron 50.0%
CTTGGCGTTCTTTCACCACA+TGG + chr4_1:86772193-86772212 None:intergenic 50.0%
CATGTGGTGAAAGAACGCCA+AGG - chr4_1:86772191-86772210 Msa0581400:intron 50.0%
GGAGGGAGTTGGAACATTAG+GGG - chr4_1:86772256-86772275 Msa0581400:intron 50.0%
AGGAGCCGTAAATTCAGGCT+TGG - chr4_1:86772311-86772330 Msa0581400:intron 50.0%
CTTGGCATGAAGGTTGCATC+TGG - chr4_1:86772329-86772348 Msa0581400:intron 50.0%
CATTCGTGAAGCCAAGACAG+TGG - chr4_1:86772370-86772389 Msa0581400:intron 50.0%
TGTTTGACATACCGCTCCCA+AGG + chr4_1:86772763-86772782 None:intergenic 50.0%
TCTGTGCTCATGCAAGTGTG+AGG + chr4_1:86773074-86773093 None:intergenic 50.0%
GAGCAGGTTGTAGAGTACGA+TGG - chr4_1:86773263-86773282 Msa0581400:intron 50.0%
CAGAAGTAACAGACATGGGG+AGG + chr4_1:86773403-86773422 None:intergenic 50.0%
AATTCAGCGATGCCAGTTGG+AGG - chr4_1:86773434-86773453 Msa0581400:CDS 50.0%
TACTGTGAAGGGGAAACCCT+TGG + chr4_1:86773547-86773566 None:intergenic 50.0%
AGAAAAGGAGAAGGGAGGTG+AGG + chr4_1:86773804-86773823 None:intergenic 50.0%
TATCCAAGCCAGGCCTTGAT+TGG - chr4_1:86774164-86774183 Msa0581400:intron 50.0%
TTTCCAATCAAGGCCTGGCT+TGG + chr4_1:86774170-86774189 None:intergenic 50.0%
! TCAAAAGGATTTGGGGCAGG+TGG + chr4_1:86774365-86774384 None:intergenic 50.0%
! CTTGCTTCGCCTTTTCAGCA+TGG - chr4_1:86774487-86774506 Msa0581400:intron 50.0%
GATGACCTCCCATGCTGAAA+AGG + chr4_1:86774499-86774518 None:intergenic 50.0%
TCGAAGTTCGGCATAGGAGA+TGG + chr4_1:86774566-86774585 None:intergenic 50.0%
TCCTATGCCGAACTTCGATG+AGG - chr4_1:86774568-86774587 Msa0581400:intron 50.0%
TCCTCATCGAAGTTCGGCAT+AGG + chr4_1:86774572-86774591 None:intergenic 50.0%
GAGCGATCCTCATCGAAGTT+CGG + chr4_1:86774578-86774597 None:intergenic 50.0%
TGTGGGATGGCTGAAGATCA+AGG - chr4_1:86774616-86774635 Msa0581400:intron 50.0%
AGATCAAGGCAGCAATGAGG+TGG - chr4_1:86774630-86774649 Msa0581400:intron 50.0%
GATCAAGGCAGCAATGAGGT+GGG - chr4_1:86774631-86774650 Msa0581400:intron 50.0%
ATCAAGGCAGCAATGAGGTG+GGG - chr4_1:86774632-86774651 Msa0581400:intron 50.0%
TGCTAAGGAAGCCGATGTAC+TGG + chr4_1:86775131-86775150 None:intergenic 50.0%
CAGAAAGCGGGAAAGTGACG+GGG + chr4_1:86768874-86768893 None:intergenic 55.0%
ATGCAGAGACCACCTACCGA+CGG - chr4_1:86769294-86769313 Msa0581400:CDS 55.0%
ATACTTGCTCCGTCGGTAGG+TGG + chr4_1:86769306-86769325 None:intergenic 55.0%
ACCTACCGACGGAGCAAGTA+TGG - chr4_1:86769305-86769324 Msa0581400:CDS 55.0%
CCTACCGACGGAGCAAGTAT+GGG - chr4_1:86769306-86769325 Msa0581400:CDS 55.0%
CTACCGACGGAGCAAGTATG+GGG - chr4_1:86769307-86769326 Msa0581400:CDS 55.0%
TATGGGGAAAAGGGCCCTTG+AGG - chr4_1:86769323-86769342 Msa0581400:CDS 55.0%
ATGGGGAAAAGGGCCCTTGA+GGG - chr4_1:86769324-86769343 Msa0581400:CDS 55.0%
CATCATCTCCACCACCCTCA+AGG + chr4_1:86769341-86769360 None:intergenic 55.0%
AGAGCAGGCCTCTTTCGTTC+AGG + chr4_1:86769369-86769388 None:intergenic 55.0%
GAAAGAGGCCTGCTCTTGCT+AGG - chr4_1:86769373-86769392 Msa0581400:CDS 55.0%
GAGCGTGCTTTGGCGAAGTT+AGG - chr4_1:86770915-86770934 Msa0581400:CDS 55.0%
AGGAAAAGTGGAAGGCGAGC+AGG - chr4_1:86772016-86772035 Msa0581400:intron 55.0%
GGAAAAGTGGAAGGCGAGCA+GGG - chr4_1:86772017-86772036 Msa0581400:intron 55.0%
GAAAAGTGGAAGGCGAGCAG+GGG - chr4_1:86772018-86772037 Msa0581400:intron 55.0%
AAAAGTGGAAGGCGAGCAGG+GGG - chr4_1:86772019-86772038 Msa0581400:intron 55.0%
GTGACACTCAAGGAGGGAGT+TGG - chr4_1:86772245-86772264 Msa0581400:intron 55.0%
AACCACGTCTATGAGCTGCG+TGG - chr4_1:86772884-86772903 Msa0581400:intron 55.0%
!! GAGCTGCGTGGCCTTATAAC+AGG - chr4_1:86772896-86772915 Msa0581400:intron 55.0%
GGCATACGACAATTGGGAGC+AGG - chr4_1:86773247-86773266 Msa0581400:intron 55.0%
GTAACAGACATGGGGAGGGA+TGG + chr4_1:86773398-86773417 None:intergenic 55.0%
AGGGGAGAATCACTCCTCCA+AGG - chr4_1:86773527-86773546 Msa0581400:intron 55.0%
GGGGAGAATCACTCCTCCAA+GGG - chr4_1:86773528-86773547 Msa0581400:intron 55.0%
TGTGAAGGGGAAACCCTTGG+AGG + chr4_1:86773544-86773563 None:intergenic 55.0%
!! AGCACAGTAGGGTTGGCTCT+TGG - chr4_1:86774287-86774306 Msa0581400:intron 55.0%
GCATGGAAGAGCTAGCAGCA+TGG + chr4_1:86774340-86774359 None:intergenic 55.0%
! ATTTGGGGCAGGTGGTTGCA+TGG + chr4_1:86774357-86774376 None:intergenic 55.0%
! CTTCGCCTTTTCAGCATGGG+AGG - chr4_1:86774491-86774510 Msa0581400:intron 55.0%
TCGTCCTGGCAAAGCTGTTG+TGG - chr4_1:86774598-86774617 Msa0581400:intron 55.0%
CGTCCTGGCAAAGCTGTTGT+GGG - chr4_1:86774599-86774618 Msa0581400:intron 55.0%
CATCCCACAACAGCTTTGCC+AGG + chr4_1:86774605-86774624 None:intergenic 55.0%
CTGGCAAAGCTGTTGTGGGA+TGG - chr4_1:86774603-86774622 Msa0581400:intron 55.0%
! TGAGAAGCGGGCTCAGATAG+AGG - chr4_1:86774679-86774698 Msa0581400:intron 55.0%
CCCATACTTGCTCCGTCGGT+AGG + chr4_1:86769309-86769328 None:intergenic 60.0%
AAAAGGGCCCTTGAGGGTGG+TGG - chr4_1:86769330-86769349 Msa0581400:CDS 60.0%
! GGTGACGAGGTATCCAAGCC+AGG - chr4_1:86774154-86774173 Msa0581400:intron 60.0%
GATGAGGATCGCTCTCGTCC+TGG - chr4_1:86774584-86774603 Msa0581400:intron 60.0%
GGGAAAAGGGCCCTTGAGGG+TGG - chr4_1:86769327-86769346 Msa0581400:CDS 65.0%
!! TTGGTTTGGGGGTGGGGGAC+TGG - chr4_1:86770351-86770370 Msa0581400:CDS 65.0%
GGCCACGCAGCTCATAGACG+TGG + chr4_1:86772889-86772908 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 86768561 86775155 86768561 ID=Msa0581400;Name=Msa0581400
chr4_1 mRNA 86768561 86775155 86768561 ID=Msa0581400-mRNA-1;Parent=Msa0581400;Name=Msa0581400-mRNA-1;_AED=0.05;_eAED=0.05;_QI=457|0.88|0.9|1|0.77|0.8|10|440|607
chr4_1 exon 86768561 86769578 86768561 ID=Msa0581400-mRNA-1:exon:32121;Parent=Msa0581400-mRNA-1
chr4_1 exon 86770345 86770495 86770345 ID=Msa0581400-mRNA-1:exon:32120;Parent=Msa0581400-mRNA-1
chr4_1 exon 86770755 86770958 86770755 ID=Msa0581400-mRNA-1:exon:32119;Parent=Msa0581400-mRNA-1
chr4_1 exon 86771034 86771194 86771034 ID=Msa0581400-mRNA-1:exon:32118;Parent=Msa0581400-mRNA-1
chr4_1 exon 86771294 86771787 86771294 ID=Msa0581400-mRNA-1:exon:32117;Parent=Msa0581400-mRNA-1
chr4_1 exon 86772758 86772816 86772758 ID=Msa0581400-mRNA-1:exon:32116;Parent=Msa0581400-mRNA-1
chr4_1 exon 86773428 86773503 86773428 ID=Msa0581400-mRNA-1:exon:32115;Parent=Msa0581400-mRNA-1
chr4_1 exon 86774322 86774446 86774322 ID=Msa0581400-mRNA-1:exon:32114;Parent=Msa0581400-mRNA-1
chr4_1 exon 86774685 86775079 86774685 ID=Msa0581400-mRNA-1:exon:32113;Parent=Msa0581400-mRNA-1
chr4_1 exon 86775118 86775155 86775118 ID=Msa0581400-mRNA-1:exon:32112;Parent=Msa0581400-mRNA-1
chr4_1 five_prime_UTR 86775118 86775155 86775118 ID=Msa0581400-mRNA-1:five_prime_utr;Parent=Msa0581400-mRNA-1
chr4_1 five_prime_UTR 86774685 86775079 86774685 ID=Msa0581400-mRNA-1:five_prime_utr;Parent=Msa0581400-mRNA-1
chr4_1 five_prime_UTR 86774423 86774446 86774423 ID=Msa0581400-mRNA-1:five_prime_utr;Parent=Msa0581400-mRNA-1
chr4_1 CDS 86774322 86774422 86774322 ID=Msa0581400-mRNA-1:cds;Parent=Msa0581400-mRNA-1
chr4_1 CDS 86773428 86773503 86773428 ID=Msa0581400-mRNA-1:cds;Parent=Msa0581400-mRNA-1
chr4_1 CDS 86772758 86772816 86772758 ID=Msa0581400-mRNA-1:cds;Parent=Msa0581400-mRNA-1
chr4_1 CDS 86771294 86771787 86771294 ID=Msa0581400-mRNA-1:cds;Parent=Msa0581400-mRNA-1
chr4_1 CDS 86771034 86771194 86771034 ID=Msa0581400-mRNA-1:cds;Parent=Msa0581400-mRNA-1
chr4_1 CDS 86770755 86770958 86770755 ID=Msa0581400-mRNA-1:cds;Parent=Msa0581400-mRNA-1
chr4_1 CDS 86770345 86770495 86770345 ID=Msa0581400-mRNA-1:cds;Parent=Msa0581400-mRNA-1
chr4_1 CDS 86769001 86769578 86769001 ID=Msa0581400-mRNA-1:cds;Parent=Msa0581400-mRNA-1
chr4_1 three_prime_UTR 86768561 86769000 86768561 ID=Msa0581400-mRNA-1:three_prime_utr;Parent=Msa0581400-mRNA-1
Gene Sequence

>Msa0581400

ATGCAGAGACCACCTACCGACGGAGCAAGTATGGGGAAAAGGGCCCTTGAGGGTGGTGGAGATGATGATCAGCCTGAACGAAAGAGGCCTGCTCTTGCTAGTGTAATTGTTGAAGCTCTCAAGGTGGACAGTTTACAGAAGCTTTGCTCATCTTTAGAACCTATTCTTCGTAGAGTTGTGAGTGAAGAAGTGGAGCGTGCTTTGGCGAAGTTAGGTCCTGCAAGACTTAGTGGAAGGTCTTCCCCTAAAAGGATTGAAGGTCCTGATGGTAGAAACTTGCGGCTTCAATTTAGGTCCCGACTGGCTCTTCCTCTATTCACAGGAGGAAAAGTGGAAGGCGAGCAGGGGGCTCCAATTCATGTTGTTCTGGTTGATGCCAACAGTGGAAGTGTGGTAACATCTGGACCTGAATCATGTATAAAACTCGATGTCGTTGTCCTTGAAGGCGATTTTAACAATGAAGATGATGAAGATTGGAGCCAAGAGGAATTTGAAAGCCATGTGGTGAAAGAACGCCAAGGAAAGAGACCTTTGTTGAACGGGGAATTGCAAGTGACACTCAAGGAGGGAGTTGGAACATTAGGGGAACTGATATTTACAGACAATTCAAGCTGGATAAGGAGCCGTAAATTCAGGCTTGGCATGAAGGTTGCATCTGGTTTTGGCGAGTCTATACGCATTCGTGAAGCCAAGACAGTGGCTTTTACTGTTAAAGATCATAGAGGAGAATTGTATAAGAAGCATTATCCTCCTGCATTGGGTGATGATGTATGGAGATTGGAGAAAATAGGTAAGGATGGGTCATTTCACAAAAAGTTGAATAATGCTGGAATATTCACCGTTGAAGACTTTCTTCGACTTGTGGTTAAGGATCAACAGAAATTGCGGAATATCCTTGGGAGCGGTATGTCAAACAAGATGTGGGAAGCTCTCTTAGACCATGCAAAGACATGTGTTCTAAGCGGGAAGCTTTATGTTTATTATCCAGAAGATACAAGAAATGTTGGTGTTATTTTTAACCACGTCTATGAGCTGCGTGGCCTTATAACAGGAGAGCAATTCTTTTCTGCTGATTCTCTTAGCGATAATCAGAAGGTGTACGTAGATTCATTGGTGAAAAAGGCATACGACAATTGGGAGCAGGTTGTAGAGTACGATGGCAAATCACTTGTGGATGCTGAGCAAAATAACAACACTGTTGAATCTGAAAATGAACTTCATGTGGAGTCAATTGATTATGATGGCGGTTTTAACAATAGCATGGTGACGAGGTATCCAAGCCAGGCCTTGATTGGAAATTCCAGCTCTCGGAGTCATTTTGATGACCCGTTATATCTGTCTAACGACCATTTATTAGGCAATGCTCACCAATCCCAAAGCTCTAGAAATGATCATAGCACAGTAGGGTTGGCTCTTGGTCCTCCTCAATCATCAACTTCAGTTTTCCATGCTGCTAGCTCTTCCATGCAACCACCTGCCCCAAATCCTTTTGATGATTGGTCAAACAACAGGGACAAGGGTGTTGATGACTTCTTTTCAGAGGATGAAATCCGCGTTAGAAGTAATGAGATACTAGAGAATGAAGACATGCAGCACTTGCTTCGCCTTTTCAGCATGGGAGGTCATCCTTCCATGAATACTGAGGATGGTTATTCATTCCCATCATTCATGCCATCTCCTATGCCGAACTTCGATGAGGATCGCTCTCGTCCTGGCAAAGCTGTTGTGGGATGGCTGAAGATCAAGGCAGCAATGAGGTGGGGCTTCTTTATCAGAAAGATAGCAGCTGAGAAGCGGGCTCAGATAGAGGAGTTAGATGAATAG
Protein sequence

>Msa0581400

MQRPPTDGASMGKRALEGGGDDDQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPARLSGRSSPKRIEGPDGRNLRLQFRSRLALPLFTGGKVEGEQGAPIHVVLVDANSGSVVTSGPESCIKLDVVVLEGDFNNEDDEDWSQEEFESHVVKERQGKRPLLNGELQVTLKEGVGTLGELIFTDNSSWIRSRKFRLGMKVASGFGESIRIREAKTVAFTVKDHRGELYKKHYPPALGDDVWRLEKIGKDGSFHKKLNNAGIFTVEDFLRLVVKDQQKLRNILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDTRNVGVIFNHVYELRGLITGEQFFSADSLSDNQKVYVDSLVKKAYDNWEQVVEYDGKSLVDAEQNNNTVESENELHVESIDYDGGFNNSMVTRYPSQALIGNSSSRSHFDDPLYLSNDHLLGNAHQSQSSRNDHSTVGLALGPPQSSTSVFHAASSSMQPPAPNPFDDWSNNRDKGVDDFFSEDEIRVRSNEILENEDMQHLLRLFSMGGHPSMNTEDGYSFPSFMPSPMPNFDEDRSRPGKAVVGWLKIKAAMRWGFFIRKIAAEKRAQIEELDE*