AlfalfaGEDB | Msa0641450

M. sativa cultivar zhongmu-4 / Msa0641450

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0641450	XP_024636833.1	69.767	301	43	6	1	282	1	272	6.59e-118	351

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0641450	A0A396I6X6	69.767	301	43	6	1	282	1	272	3.15e-118	351

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0270440	Msa0641450	-0.832342	9.982614e-56	-8.615850e-47
Msa0309080	Msa0641450	-0.816493	5.374259e-52	-8.615850e-47
Msa0327860	Msa0641450	0.820879	5.432229e-53	-8.615850e-47
Msa0342340	Msa0641450	-0.808437	3.098337e-50	-8.615850e-47
Msa0347130	Msa0641450	0.808730	2.682421e-50	-8.615850e-47
Msa0351980	Msa0641450	0.807175	5.745717e-50	-8.615850e-47
Msa0406740	Msa0641450	0.823278	1.509982e-53	-8.615850e-47
Msa0462190	Msa0641450	0.803830	2.891169e-49	-8.615850e-47
Msa0516450	Msa0641450	0.803031	4.232693e-49	-8.615850e-47
Msa0563140	Msa0641450	0.804598	2.000466e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0641450	MtrunA17_Chr4g0026091	69.767	301	43	6	1	282	1	272	6.07e-122	351

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0641450	AT5G22340.1	40.364	275	109	10	33	282	34	278	2.15e-46	158
Msa0641450	AT5G22340.2	40.364	275	109	10	33	282	34	278	4.09e-46	158

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Find 70 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGATTAGCCAAGGGAGT+AGG	0.515548	4_3:+41990319	Msa0641450:five_prime_UTR
AAAGTAAACAGAAATGATAA+AGG	0.485685	4_3:+41990301	None:intergenic
AAAGTCCATAAATTGCTGCC+GGG	0.582914	4_3:-41994247	None:intergenic
AAATAGGAAGATGACTGCAA+AGG	0.624624	4_3:+41992775	Msa0641450:CDS
AAATATTTCATAACCAGAAT+TGG	0.342280	4_3:+41994140	Msa0641450:CDS
AAATGATAAAGGATTAGCCA+AGG	0.582801	4_3:+41990312	Msa0641450:five_prime_UTR
AACTTTCAAGTACCCAAGAG+TGG	0.615621	4_3:+41992726	Msa0641450:CDS
AAGAGAGGTATCATACAGAT+TGG	0.547590	4_3:-41993048	None:intergenic
AAGGATTAGCCAAGGGAGTA+GGG	0.538522	4_3:+41990320	Msa0641450:five_prime_UTR
AATGATAAAGGATTAGCCAA+GGG	0.644790	4_3:+41990313	Msa0641450:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAGAAATACACTATTCAGTT+CGG	+	chr4_3:41990584-41990603	Msa0641450:intron	30.0%
TTCAGTGTAGTTATATGTGT+CGG	+	chr4_3:41991173-41991192	Msa0641450:intron	30.0%
AAATAACTGTTGTCAAGAAC+AGG	+	chr4_3:41991281-41991300	Msa0641450:intron	30.0%
AGTATGAAATATAAGCAAGG+AGG	-	chr4_3:41991336-41991355	None:intergenic	30.0%
ATGAACTTTCTTTCGCTTAA+CGG	+	chr4_3:41991747-41991766	Msa0641450:intron	30.0%
TTATATTAAAAAAGGGCCTC+TGG	+	chr4_3:41991950-41991969	Msa0641450:intron	30.0%
GCACTCCTCTAATTAAAATT+AGG	-	chr4_3:41991992-41992011	None:intergenic	30.0%
ATAAAGCAAATGTTAATGCG+AGG	-	chr4_3:41992108-41992127	None:intergenic	30.0%
CTTTATGCCTACAAATTTGT+TGG	+	chr4_3:41992122-41992141	Msa0641450:intron	30.0%
TCAAAGGATAGAAATAATGG+CGG	-	chr4_3:41992243-41992262	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	41990311	41994283	41990311	ID=Msa0641450;Name=Msa0641450
chr4_3	mRNA	41990311	41994283	41990311	ID=Msa0641450-mRNA-1;Parent=Msa0641450;Name=Msa0641450-mRNA-1;_AED=0.30;_eAED=0.30;_QI=79\|0.33\|0.57\|1\|0.66\|0.57\|7\|0\|282
chr4_3	exon	41990311	41990537	41990311	ID=Msa0641450-mRNA-1:exon:9443;Parent=Msa0641450-mRNA-1
chr4_3	exon	41992369	41992538	41992369	ID=Msa0641450-mRNA-1:exon:9444;Parent=Msa0641450-mRNA-1
chr4_3	exon	41992692	41992796	41992692	ID=Msa0641450-mRNA-1:exon:9445;Parent=Msa0641450-mRNA-1
chr4_3	exon	41992921	41992936	41992921	ID=Msa0641450-mRNA-1:exon:9446;Parent=Msa0641450-mRNA-1
chr4_3	exon	41992998	41993122	41992998	ID=Msa0641450-mRNA-1:exon:9447;Parent=Msa0641450-mRNA-1
chr4_3	exon	41993194	41993274	41993194	ID=Msa0641450-mRNA-1:exon:9448;Parent=Msa0641450-mRNA-1
chr4_3	exon	41994083	41994283	41994083	ID=Msa0641450-mRNA-1:exon:9449;Parent=Msa0641450-mRNA-1
chr4_3	five_prime_UTR	41990311	41990389	41990311	ID=Msa0641450-mRNA-1:five_prime_utr;Parent=Msa0641450-mRNA-1
chr4_3	CDS	41990390	41990537	41990390	ID=Msa0641450-mRNA-1:cds;Parent=Msa0641450-mRNA-1
chr4_3	CDS	41992369	41992538	41992369	ID=Msa0641450-mRNA-1:cds;Parent=Msa0641450-mRNA-1
chr4_3	CDS	41992692	41992796	41992692	ID=Msa0641450-mRNA-1:cds;Parent=Msa0641450-mRNA-1
chr4_3	CDS	41992921	41992936	41992921	ID=Msa0641450-mRNA-1:cds;Parent=Msa0641450-mRNA-1
chr4_3	CDS	41992998	41993122	41992998	ID=Msa0641450-mRNA-1:cds;Parent=Msa0641450-mRNA-1
chr4_3	CDS	41993194	41993274	41993194	ID=Msa0641450-mRNA-1:cds;Parent=Msa0641450-mRNA-1
chr4_3	CDS	41994083	41994283	41994083	ID=Msa0641450-mRNA-1:cds;Parent=Msa0641450-mRNA-1

Gene Sequence

>Msa0641450

ATGGATAGCATTAGATTTGTCTCCAATTCTTACACCTTTCAATTCTCCAAAACCCCTTCATTTTCTCCTTTCCCAACCGCTTTTTCCACATACACCCCTTCTGTTTCATCACTAAGAGCTTCTCGTTCTACTACTGCTACTACTACAGTGAGTGATGTAGATGAGGATGTCTTGCAAACATTTTTGAAGGATAGAGAATTAAACGGTGATTTTGTATCAAGAACTTGTGATTTAATATGGCGAACGGATTTCAGAAATTCTGGTGATTATGATGTTAGTAAGCTCAATGACGCCAACAATGCTCAACAAATAGAACAGATCATAGATACTAACAGTGATGGCGGTTTTTTGAAACTTTCAAGTACCCAAGAGTGGTTATTAGGTGACAATTCTGCACCAATAAATAGGAAGATGACTGCAAAGTTTGTCTTTTTTCTTGACAATCCAAGACAACAGAGCAAGACTGAAGAAACTGAACGCGCTCAAATACCAATCTGTATGATACCTCTCTTGACTCAGTATGTTCTTTATTTGCTAAAGTCGGTAACACTTACCTCAAGGCAGCTCAAGAAAGAATTACTACTTCTCTCTGTGGGTATTGGATTGGGTTGTAGCGGATATTGCTTGATAGTTTTTTCTGTACAGTTGAGCCAGTTAGCGTTCTCTGTTGTTAACGTTCTCTTATCTCTTGTTTTGGTCAAAAAATATTTCATAACCAGAATTGGTATAAGAAGCGAAGATCTTAGTGATTCTTTCGAGAAAACAATCAGGGGTAGCGGTATAGCACTTTCATCTCCAAGGCTTGTGATCCCGGCAGCAATTTATGGACTTTGGGCTGTGTCTCAT

Protein sequence

>Msa0641450

MDSIRFVSNSYTFQFSKTPSFSPFPTAFSTYTPSVSSLRASRSTTATTTVSDVDEDVLQTFLKDRELNGDFVSRTCDLIWRTDFRNSGDYDVSKLNDANNAQQIEQIIDTNSDGGFLKLSSTQEWLLGDNSAPINRKMTAKFVFFLDNPRQQSKTEETERAQIPICMIPLLTQYVLYLLKSVTLTSRQLKKELLLLSVGIGLGCSGYCLIVFSVQLSQLAFSVVNVLLSLVLVKKYFITRIGIRSEDLSDSFEKTIRGSGIALSSPRLVIPAAIYGLWAVSH