Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641450 | XP_024636833.1 | 69.767 | 301 | 43 | 6 | 1 | 282 | 1 | 272 | 6.59e-118 | 351 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641450 | A0A396I6X6 | 69.767 | 301 | 43 | 6 | 1 | 282 | 1 | 272 | 3.15e-118 | 351 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0641450 | Msa0679990 | 0.870178 | 1.775691e-66 | -8.615850e-47 |
| Msa0641450 | Msa0688550 | 0.827905 | 1.208667e-54 | -8.615850e-47 |
| Msa0641450 | Msa0750380 | 0.805308 | 1.421326e-49 | -8.615850e-47 |
| Msa0641450 | Msa0949930 | 0.810237 | 1.273508e-50 | -8.615850e-47 |
| Msa0641450 | Msa0980440 | 0.806284 | 8.863602e-50 | -8.615850e-47 |
| Msa0641450 | Msa1074610 | 0.809871 | 1.527507e-50 | -8.615850e-47 |
| Msa0641450 | Msa1184730 | 0.850747 | 1.390319e-60 | -8.615850e-47 |
| Msa0641450 | Msa1252070 | 0.801069 | 1.071571e-48 | -8.615850e-47 |
| Msa0641450 | Msa1264560 | 0.800048 | 1.730091e-48 | -8.615850e-47 |
| Msa0641450 | Msa1310110 | 0.801684 | 8.018492e-49 | -8.615850e-47 |
| Msa0641450 | Msa1364670 | 0.820699 | 5.973983e-53 | -8.615850e-47 |
| Msa0406740 | Msa0641450 | 0.823278 | 1.509982e-53 | -8.615850e-47 |
| Msa0462190 | Msa0641450 | 0.803830 | 2.891169e-49 | -8.615850e-47 |
| Msa0270440 | Msa0641450 | -0.832342 | 9.982614e-56 | -8.615850e-47 |
| Msa0309080 | Msa0641450 | -0.816493 | 5.374259e-52 | -8.615850e-47 |
| Msa0327860 | Msa0641450 | 0.820879 | 5.432229e-53 | -8.615850e-47 |
| Msa0342340 | Msa0641450 | -0.808437 | 3.098337e-50 | -8.615850e-47 |
| Msa0347130 | Msa0641450 | 0.808730 | 2.682421e-50 | -8.615850e-47 |
| Msa0351980 | Msa0641450 | 0.807175 | 5.745717e-50 | -8.615850e-47 |
| Msa0516450 | Msa0641450 | 0.803031 | 4.232693e-49 | -8.615850e-47 |
| Msa0563140 | Msa0641450 | 0.804598 | 2.000466e-49 | -8.615850e-47 |
| Msa0589150 | Msa0641450 | 0.814349 | 1.612136e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641450 | MtrunA17_Chr4g0026091 | 69.767 | 301 | 43 | 6 | 1 | 282 | 1 | 272 | 6.07e-122 | 351 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641450 | AT5G22340.1 | 40.364 | 275 | 109 | 10 | 33 | 282 | 34 | 278 | 2.15e-46 | 158 |
| Msa0641450 | AT5G22340.2 | 40.364 | 275 | 109 | 10 | 33 | 282 | 34 | 278 | 4.09e-46 | 158 |
Find 70 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGTCATCTTCCTATTTAT+TGG | 0.108061 | 4_3:-41992770 | None:intergenic |
| GTGATCCCGGCAGCAATTTA+TGG | 0.193346 | 4_3:+41994242 | Msa0641450:CDS |
| TTCGCTTCTTATACCAATTC+TGG | 0.227740 | 4_3:-41994153 | None:intergenic |
| CAAGAACTTGTGATTTAATA+TGG | 0.266135 | 4_3:+41992438 | Msa0641450:CDS |
| CGAACGGATTTCAGAAATTC+TGG | 0.284084 | 4_3:+41992461 | Msa0641450:CDS |
| ACAATTCTGCACCAATAAAT+AGG | 0.292316 | 4_3:+41992759 | Msa0641450:CDS |
| AGGAGAAAATGAAGGGGTTT+TGG | 0.293414 | 4_3:-41990436 | None:intergenic |
| AGTACCCAAGAGTGGTTATT+AGG | 0.298328 | 4_3:+41992734 | Msa0641450:CDS |
| CGTTCTCTTATCTCTTGTTT+TGG | 0.298609 | 4_3:+41994112 | Msa0641450:CDS |
| CTACTTCTCTCTGTGGGTAT+TGG | 0.302680 | 4_3:+41993209 | Msa0641450:CDS |
| CTCTCTGTGGGTATTGGATT+GGG | 0.310124 | 4_3:+41993215 | Msa0641450:CDS |
| TCTCTCTGTGGGTATTGGAT+TGG | 0.323276 | 4_3:+41993214 | Msa0641450:CDS |
| GGCAGCAATTTATGGACTTT+GGG | 0.326123 | 4_3:+41994250 | Msa0641450:CDS |
| CGGCAGCAATTTATGGACTT+TGG | 0.331522 | 4_3:+41994249 | Msa0641450:CDS |
| TTCTATTTGTTGAGCATTGT+TGG | 0.339523 | 4_3:-41992513 | None:intergenic |
| AAATATTTCATAACCAGAAT+TGG | 0.342280 | 4_3:+41994140 | Msa0641450:CDS |
| TCAGTCTTGCTCTGTTGTCT+TGG | 0.346271 | 4_3:-41993003 | None:intergenic |
| TAACAACAGAGAACGCTAAC+TGG | 0.411785 | 4_3:-41994088 | None:intergenic |
| ATCTCCAAGGCTTGTGATCC+CGG | 0.413235 | 4_3:+41994229 | Msa0641450:CDS |
| TGTCACCTAATAACCACTCT+TGG | 0.417338 | 4_3:-41992739 | None:intergenic |
| TAGCCAAGGGAGTAGGGTGG+GGG | 0.422572 | 4_3:+41990326 | Msa0641450:five_prime_UTR |
| TTAGCCAAGGGAGTAGGGTG+GGG | 0.433302 | 4_3:+41990325 | Msa0641450:five_prime_UTR |
| GAATTGAAAGGTGTAAGAAT+TGG | 0.434883 | 4_3:-41990412 | None:intergenic |
| ATTCTTTCGAGAAAACAATC+AGG | 0.440956 | 4_3:+41994186 | Msa0641450:CDS |
| CTATCTATGCTGTGCTGCCA+TGG | 0.463376 | 4_3:+41990371 | Msa0641450:exon |
| TTGAAGGATAGAGAATTAAA+CGG | 0.472253 | 4_3:+41992404 | Msa0641450:CDS |
| AAAGTAAACAGAAATGATAA+AGG | 0.485685 | 4_3:+41990301 | None:intergenic |
| GGCAGCACAGCATAGATAGA+TGG | 0.486520 | 4_3:-41990367 | None:intergenic |
| GTCACCTAATAACCACTCTT+GGG | 0.503886 | 4_3:-41992738 | None:intergenic |
| CAAAGTCCATAAATTGCTGC+CGG | 0.506806 | 4_3:-41994248 | None:intergenic |
| AAAGGATTAGCCAAGGGAGT+AGG | 0.515548 | 4_3:+41990319 | Msa0641450:five_prime_UTR |
| TCTACTACTGCTACTACTAC+AGG | 0.520934 | 4_3:+41990516 | Msa0641450:CDS |
| CATAGATAGATGGATAGAAC+GGG | 0.520971 | 4_3:-41990357 | None:intergenic |
| CAATGCTCAACAAATAGAAC+AGG | 0.524035 | 4_3:+41992517 | Msa0641450:CDS |
| ATTAGCCAAGGGAGTAGGGT+GGG | 0.528738 | 4_3:+41990324 | Msa0641450:five_prime_UTR |
| GATTAGCCAAGGGAGTAGGG+TGG | 0.534332 | 4_3:+41990323 | Msa0641450:five_prime_UTR |
| TGTTCTTTATTTGCTAAAGT+CGG | 0.535697 | 4_3:+41993080 | Msa0641450:CDS |
| AGCCAAGGGAGTAGGGTGGG+GGG | 0.536539 | 4_3:+41990327 | Msa0641450:five_prime_UTR |
| AAGGATTAGCCAAGGGAGTA+GGG | 0.538522 | 4_3:+41990320 | Msa0641450:five_prime_UTR |
| AAGAGAGGTATCATACAGAT+TGG | 0.547590 | 4_3:-41993048 | None:intergenic |
| GACAAATCTAATGCTATCCA+TGG | 0.549721 | 4_3:-41990388 | None:intergenic |
| GAATTACTACTTCTCTCTGT+GGG | 0.553752 | 4_3:+41993203 | Msa0641450:CDS |
| GCTGCCGGGATCACAAGCCT+TGG | 0.555710 | 4_3:-41994233 | None:intergenic |
| TGAAACAGAAGGGGTGTATG+TGG | 0.556628 | 4_3:-41990475 | None:intergenic |
| TTGTGATTTAATATGGCGAA+CGG | 0.556747 | 4_3:+41992445 | Msa0641450:CDS |
| GTATAGCACTTTCATCTCCA+AGG | 0.559840 | 4_3:+41994216 | Msa0641450:CDS |
| GCATAGATAGATGGATAGAA+CGG | 0.563419 | 4_3:-41990358 | None:intergenic |
| ATCATAGATACTAACAGTGA+TGG | 0.576106 | 4_3:+41992692 | Msa0641450:CDS |
| CTCTTAGTGATGAAACAGAA+GGG | 0.578696 | 4_3:-41990485 | None:intergenic |
| TTCTTTCGAGAAAACAATCA+GGG | 0.581970 | 4_3:+41994187 | Msa0641450:CDS |
| AAATGATAAAGGATTAGCCA+AGG | 0.582801 | 4_3:+41990312 | Msa0641450:five_prime_UTR |
| AAAGTCCATAAATTGCTGCC+GGG | 0.582914 | 4_3:-41994247 | None:intergenic |
| GTTGGGAAAGGAGAAAATGA+AGG | 0.596622 | 4_3:-41990444 | None:intergenic |
| GAGAAAACAATCAGGGGTAG+CGG | 0.601554 | 4_3:+41994194 | Msa0641450:CDS |
| GGTATTGGATTGGGTTGTAG+CGG | 0.607478 | 4_3:+41993224 | Msa0641450:CDS |
| AACTTTCAAGTACCCAAGAG+TGG | 0.615621 | 4_3:+41992726 | Msa0641450:CDS |
| GCTCTTAGTGATGAAACAGA+AGG | 0.616956 | 4_3:-41990486 | None:intergenic |
| AAATAGGAAGATGACTGCAA+AGG | 0.624624 | 4_3:+41992775 | Msa0641450:CDS |
| GGTAACACTTACCTCAAGGC+AGG | 0.625851 | 4_3:+41993101 | Msa0641450:CDS |
| TTGGGAAAGGAGAAAATGAA+GGG | 0.630954 | 4_3:-41990443 | None:intergenic |
| TTTAGTGAGTGATGTAGATG+AGG | 0.640687 | 4_3:+41992364 | Msa0641450:intron |
| ATCAAAACATACCTGCCTTG+AGG | 0.644064 | 4_3:-41993112 | None:intergenic |
| AGTCGGTAACACTTACCTCA+AGG | 0.644123 | 4_3:+41993097 | Msa0641450:CDS |
| AATGATAAAGGATTAGCCAA+GGG | 0.644790 | 4_3:+41990313 | Msa0641450:five_prime_UTR |
| AGAATTACTACTTCTCTCTG+TGG | 0.661836 | 4_3:+41993202 | Msa0641450:CDS |
| AGAACATACTGAGTCAAGAG+AGG | 0.665287 | 4_3:-41993063 | None:intergenic |
| TCTTAGTGATGAAACAGAAG+GGG | 0.677276 | 4_3:-41990484 | None:intergenic |
| ATAGATACTAACAGTGATGG+CGG | 0.685515 | 4_3:+41992695 | Msa0641450:CDS |
| TCTTTCGAGAAAACAATCAG+GGG | 0.694510 | 4_3:+41994188 | Msa0641450:CDS |
| TGGGAAAGGAGAAAATGAAG+GGG | 0.695621 | 4_3:-41990442 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTTAAAAAAATTAATAAG+GGG | - | chr4_3:41990929-41990948 | None:intergenic | 10.0% |
| !!! | AATATAACAACTTATTTTAA+TGG | - | chr4_3:41991404-41991423 | None:intergenic | 10.0% |
| !!! | TGATTAAGTATAATTTTTTT+AGG | - | chr4_3:41992269-41992288 | None:intergenic | 10.0% |
| !! | AAAAAATTATACTTAATCAT+TGG | + | chr4_3:41992270-41992289 | Msa0641450:intron | 10.0% |
| !! | AAATATGATTAAAGTTAAAT+AGG | + | chr4_3:41993791-41993810 | Msa0641450:intron | 10.0% |
| !! | AATATGATTAAAGTTAAATA+GGG | + | chr4_3:41993792-41993811 | Msa0641450:intron | 10.0% |
| !! | TGATATATGATAAAACATTA+TGG | - | chr4_3:41990754-41990773 | None:intergenic | 15.0% |
| !! | ACTTAAAAAAATTAATAAGG+GGG | - | chr4_3:41990928-41990947 | None:intergenic | 15.0% |
| !!! | TAAGTATATGTTTGATTTTT+TGG | + | chr4_3:41990943-41990962 | Msa0641450:intron | 15.0% |
| !! | TATATTGTAGAATTCATATT+TGG | + | chr4_3:41991418-41991437 | Msa0641450:intron | 15.0% |
| !! | ATATTGTAGAATTCATATTT+GGG | + | chr4_3:41991419-41991438 | Msa0641450:intron | 15.0% |
| !!! | TGATTAGCTTTTAATATTAA+GGG | - | chr4_3:41991463-41991482 | None:intergenic | 15.0% |
| !! | ACTAAAAATAAAATATTGGT+GGG | - | chr4_3:41991902-41991921 | None:intergenic | 15.0% |
| !! | AACTAAAAATAAAATATTGG+TGG | - | chr4_3:41991903-41991922 | None:intergenic | 15.0% |
| !! | ATAACAGCTTATATTAAAAA+AGG | + | chr4_3:41991942-41991961 | Msa0641450:intron | 15.0% |
| !! | TAACAGCTTATATTAAAAAA+GGG | + | chr4_3:41991943-41991962 | Msa0641450:intron | 15.0% |
| !!! | TTTACTTATTTTTCATAGTA+AGG | + | chr4_3:41992055-41992074 | Msa0641450:intron | 15.0% |
| !!! | TCTATATTATTTGAAGTAAA+TGG | + | chr4_3:41992213-41992232 | Msa0641450:intron | 15.0% |
| !!! | TATGGTTTTCATTTTTTATT+TGG | + | chr4_3:41992798-41992817 | Msa0641450:intron | 15.0% |
| !! | AAAAAAATAAATAAATCAGC+AGG | - | chr4_3:41993166-41993185 | None:intergenic | 15.0% |
| !! | ATAAGATGAAAGAAATAATT+TGG | - | chr4_3:41993468-41993487 | None:intergenic | 15.0% |
| !! | ATATGATTAAAGTTAAATAG+GGG | + | chr4_3:41993793-41993812 | Msa0641450:intron | 15.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | - | chr4_3:41991148-41991167 | None:intergenic | 20.0% |
| !!! | CTGATTAGCTTTTAATATTA+AGG | - | chr4_3:41991464-41991483 | None:intergenic | 20.0% |
| !! | CTTAATATTAAAAGCTAATC+AGG | + | chr4_3:41991462-41991481 | Msa0641450:intron | 20.0% |
| !!! | ACTACTTTCTTTTTTATTCT+AGG | + | chr4_3:41991677-41991696 | Msa0641450:intron | 20.0% |
| !!! | CTACTTTCTTTTTTATTCTA+GGG | + | chr4_3:41991678-41991697 | Msa0641450:intron | 20.0% |
| !!! | TTTTCAAAAGAAAGAAAAGA+AGG | - | chr4_3:41991704-41991723 | None:intergenic | 20.0% |
| !! | GCTTCATATTATAACTTTAA+TGG | + | chr4_3:41992030-41992049 | Msa0641450:intron | 20.0% |
| !!! | TTTCATTTTTTATTTGGATC+TGG | + | chr4_3:41992804-41992823 | Msa0641450:intron | 20.0% |
| !!! | GTTTACAACTATTTTGTTAA+GGG | - | chr4_3:41992861-41992880 | None:intergenic | 20.0% |
| !!! | AGTTTACAACTATTTTGTTA+AGG | - | chr4_3:41992862-41992881 | None:intergenic | 20.0% |
| !! | GAACAAAGAATATAATTGAA+TGG | - | chr4_3:41993365-41993384 | None:intergenic | 20.0% |
| !! | ATGATAAGATTAAGTTTAGA+TGG | + | chr4_3:41993385-41993404 | Msa0641450:intron | 20.0% |
| !! | TTTACTATGTCTTATCATAA+TGG | + | chr4_3:41993414-41993433 | Msa0641450:intron | 20.0% |
| !!! | TGGAAAATTTTATACTTTTG+AGG | - | chr4_3:41993666-41993685 | None:intergenic | 20.0% |
| !! | TATGATTAAAGTTAAATAGG+GGG | + | chr4_3:41993794-41993813 | Msa0641450:intron | 20.0% |
| !!! | TTCTTTTTCATGAATATTTG+AGG | - | chr4_3:41994018-41994037 | None:intergenic | 20.0% |
| !!! | AAATTCAAAGTGAAAGTTTT+CGG | - | chr4_3:41994056-41994075 | None:intergenic | 20.0% |
| !! | AAATATTTCATAACCAGAAT+TGG | + | chr4_3:41994140-41994159 | Msa0641450:CDS | 20.0% |
| ! | AAAAATTAATAAGGGGGTTA+AGG | - | chr4_3:41990922-41990941 | None:intergenic | 25.0% |
| ! | TTGTTGATATATTCAACTCA+AGG | + | chr4_3:41991250-41991269 | Msa0641450:intron | 25.0% |
| ! | TGTTGATATATTCAACTCAA+GGG | + | chr4_3:41991251-41991270 | Msa0641450:intron | 25.0% |
| ! | TTATTTGATCGGGAATTTAA+TGG | + | chr4_3:41991310-41991329 | Msa0641450:intron | 25.0% |
| ! | TACAGTATGAAATATAAGCA+AGG | - | chr4_3:41991339-41991358 | None:intergenic | 25.0% |
| ! | ATTCTTACAATGTCGTTAAA+TGG | + | chr4_3:41991491-41991510 | Msa0641450:intron | 25.0% |
| ! | AAAAGAAAGTAGTGATTAGA+AGG | - | chr4_3:41991670-41991689 | None:intergenic | 25.0% |
| !!! | AAGCTCCTAATTTTAATTAG+AGG | + | chr4_3:41991984-41992003 | Msa0641450:intron | 25.0% |
| !! | TTTATGCCTACAAATTTGTT+GGG | + | chr4_3:41992123-41992142 | Msa0641450:intron | 25.0% |
| !!! | ATTATGCAACAACCTTTTTT+GGG | - | chr4_3:41992179-41992198 | None:intergenic | 25.0% |
| !!! | AATTATGCAACAACCTTTTT+TGG | - | chr4_3:41992180-41992199 | None:intergenic | 25.0% |
| ! | CAAATAATATAGAAACTACC+AGG | - | chr4_3:41992206-41992225 | None:intergenic | 25.0% |
| !!! | TAATTTTTTTAGGTGCTCAA+AGG | - | chr4_3:41992259-41992278 | None:intergenic | 25.0% |
| ! | ATTATACTTAATCATTGGCA+TGG | + | chr4_3:41992275-41992294 | Msa0641450:intron | 25.0% |
| ! | TACATCACTCACTAAAATTA+TGG | - | chr4_3:41992360-41992379 | None:intergenic | 25.0% |
| ! | TTGAAGGATAGAGAATTAAA+CGG | + | chr4_3:41992404-41992423 | Msa0641450:CDS | 25.0% |
| ! | CAAGAACTTGTGATTTAATA+TGG | + | chr4_3:41992438-41992457 | Msa0641450:CDS | 25.0% |
| !! | ACTATTTTGTTAAGGGATAA+TGG | - | chr4_3:41992854-41992873 | None:intergenic | 25.0% |
| !!! | TTCAAGTTTGTCTTTTTTCT+TGG | + | chr4_3:41992915-41992934 | Msa0641450:intron | 25.0% |
| !! | TGTTCTTTATTTGCTAAAGT+CGG | + | chr4_3:41993080-41993099 | Msa0641450:CDS | 25.0% |
| ! | TCTAGTTAAATTCAAGAAGA+TGG | - | chr4_3:41993633-41993652 | None:intergenic | 25.0% |
| ! | TTTCATGAATATTTGAGGAA+CGG | - | chr4_3:41994013-41994032 | None:intergenic | 25.0% |
| ! | AAAAAGAAGTCAAAGAAGTA+CGG | + | chr4_3:41994030-41994049 | Msa0641450:intron | 25.0% |
| !! | AAATGATAAAGGATTAGCCA+AGG | + | chr4_3:41990312-41990331 | Msa0641450:five_prime_UTR | 30.0% |
| !! | AATGATAAAGGATTAGCCAA+GGG | + | chr4_3:41990313-41990332 | Msa0641450:five_prime_UTR | 30.0% |
| ! | GAATTGAAAGGTGTAAGAAT+TGG | - | chr4_3:41990415-41990434 | None:intergenic | 30.0% |
| CAGAAATACACTATTCAGTT+CGG | + | chr4_3:41990584-41990603 | Msa0641450:intron | 30.0% | |
| !! | AGAGCATTATATTTTCTCTG+TGG | + | chr4_3:41990654-41990673 | Msa0641450:intron | 30.0% |
| ! | ATGTCTTATTCGAGTAAGTT+GGG | + | chr4_3:41990705-41990724 | Msa0641450:intron | 30.0% |
| !! | GTTTGAAGTCTTAGTTTTCT+TGG | + | chr4_3:41991035-41991054 | Msa0641450:intron | 30.0% |
| TTCAGTGTAGTTATATGTGT+CGG | + | chr4_3:41991173-41991192 | Msa0641450:intron | 30.0% | |
| AAATAACTGTTGTCAAGAAC+AGG | + | chr4_3:41991281-41991300 | Msa0641450:intron | 30.0% | |
| AGTATGAAATATAAGCAAGG+AGG | - | chr4_3:41991336-41991355 | None:intergenic | 30.0% | |
| ! | GCTTTTAATATTAAGGGCTA+GGG | - | chr4_3:41991457-41991476 | None:intergenic | 30.0% |
| ! | AGCTTTTAATATTAAGGGCT+AGG | - | chr4_3:41991458-41991477 | None:intergenic | 30.0% |
| ATGAACTTTCTTTCGCTTAA+CGG | + | chr4_3:41991747-41991766 | Msa0641450:intron | 30.0% | |
| TTATATTAAAAAAGGGCCTC+TGG | + | chr4_3:41991950-41991969 | Msa0641450:intron | 30.0% | |
| GCACTCCTCTAATTAAAATT+AGG | - | chr4_3:41991992-41992011 | None:intergenic | 30.0% | |
| ATAAAGCAAATGTTAATGCG+AGG | - | chr4_3:41992108-41992127 | None:intergenic | 30.0% | |
| CTTTATGCCTACAAATTTGT+TGG | + | chr4_3:41992122-41992141 | Msa0641450:intron | 30.0% | |
| TCAAAGGATAGAAATAATGG+CGG | - | chr4_3:41992243-41992262 | None:intergenic | 30.0% | |
| TGCTCAAAGGATAGAAATAA+TGG | - | chr4_3:41992246-41992265 | None:intergenic | 30.0% | |
| ! | ATCCTATGTTTTCATGTCAT+TGG | + | chr4_3:41992299-41992318 | Msa0641450:intron | 30.0% |
| ! | TGTCTTGCAAACATTTTTGA+AGG | + | chr4_3:41992388-41992407 | Msa0641450:CDS | 30.0% |
| TTGTGATTTAATATGGCGAA+CGG | + | chr4_3:41992445-41992464 | Msa0641450:CDS | 30.0% | |
| ! | TTCTATTTGTTGAGCATTGT+TGG | - | chr4_3:41992516-41992535 | None:intergenic | 30.0% |
| ATCATAGATACTAACAGTGA+TGG | + | chr4_3:41992692-41992711 | Msa0641450:CDS | 30.0% | |
| ACAATTCTGCACCAATAAAT+AGG | + | chr4_3:41992759-41992778 | Msa0641450:CDS | 30.0% | |
| !!! | CTTGATAGTTTTTTCTGTAC+AGG | + | chr4_3:41993253-41993272 | Msa0641450:CDS | 30.0% |
| ATGCAATAACAAACCTGAAA+AGG | - | chr4_3:41993599-41993618 | None:intergenic | 30.0% | |
| AACTTATCTGATGTGATGTT+TGG | - | chr4_3:41993686-41993705 | None:intergenic | 30.0% | |
| ! | TACAAATGCTAGTTTGTGAT+CGG | - | chr4_3:41993759-41993778 | None:intergenic | 30.0% |
| ! | TCAATCTTCGTTGCTTATTT+TGG | + | chr4_3:41993904-41993923 | Msa0641450:intron | 30.0% |
| ATTCTTTCGAGAAAACAATC+AGG | + | chr4_3:41994186-41994205 | Msa0641450:CDS | 30.0% | |
| TTCTTTCGAGAAAACAATCA+GGG | + | chr4_3:41994187-41994206 | Msa0641450:CDS | 30.0% | |
| CATAGATAGATGGATAGAAC+GGG | - | chr4_3:41990360-41990379 | None:intergenic | 35.0% | |
| GCATAGATAGATGGATAGAA+CGG | - | chr4_3:41990361-41990380 | None:intergenic | 35.0% | |
| GACAAATCTAATGCTATCCA+TGG | - | chr4_3:41990391-41990410 | None:intergenic | 35.0% | |
| TTGGGAAAGGAGAAAATGAA+GGG | - | chr4_3:41990446-41990465 | None:intergenic | 35.0% | |
| TCTTAGTGATGAAACAGAAG+GGG | - | chr4_3:41990487-41990506 | None:intergenic | 35.0% | |
| CTCTTAGTGATGAAACAGAA+GGG | - | chr4_3:41990488-41990507 | None:intergenic | 35.0% | |
| !! | TAGTGTATTTCTGAAGCAGA+AGG | - | chr4_3:41990577-41990596 | None:intergenic | 35.0% |
| CAACTTACTCGAATAAGACA+TGG | - | chr4_3:41990706-41990725 | None:intergenic | 35.0% | |
| ! | CATGTCTTATTCGAGTAAGT+TGG | + | chr4_3:41990704-41990723 | Msa0641450:intron | 35.0% |
| AGTTTAGATAACCAGAGCAT+TGG | + | chr4_3:41990996-41991015 | Msa0641450:intron | 35.0% | |
| TTCTTTCTAATCCAATGCTC+TGG | - | chr4_3:41991010-41991029 | None:intergenic | 35.0% | |
| TCTCAAATTATTAGCGGTGT+CGG | - | chr4_3:41991142-41991161 | None:intergenic | 35.0% | |
| ! | ACAGGCTTCTGTTATTTGAT+CGG | + | chr4_3:41991299-41991318 | Msa0641450:intron | 35.0% |
| ! | GCTTAACGGCTTAATCTTTT+GGG | + | chr4_3:41991761-41991780 | Msa0641450:intron | 35.0% |
| TGCCAATGACATGAAAACAT+AGG | - | chr4_3:41992304-41992323 | None:intergenic | 35.0% | |
| TTTAGTGAGTGATGTAGATG+AGG | + | chr4_3:41992364-41992383 | Msa0641450:intron | 35.0% | |
| CAATGCTCAACAAATAGAAC+AGG | + | chr4_3:41992517-41992536 | Msa0641450:CDS | 35.0% | |
| ! | TGTGTTTGGTTTCTTTGATC+AGG | + | chr4_3:41992632-41992651 | Msa0641450:intron | 35.0% |
| ATAGATACTAACAGTGATGG+CGG | + | chr4_3:41992695-41992714 | Msa0641450:CDS | 35.0% | |
| GCAGTCATCTTCCTATTTAT+TGG | - | chr4_3:41992773-41992792 | None:intergenic | 35.0% | |
| AAATAGGAAGATGACTGCAA+AGG | + | chr4_3:41992775-41992794 | Msa0641450:CDS | 35.0% | |
| !! | AAGAGAGGTATCATACAGAT+TGG | - | chr4_3:41993051-41993070 | None:intergenic | 35.0% |
| AGAATTACTACTTCTCTCTG+TGG | + | chr4_3:41993202-41993221 | Msa0641450:CDS | 35.0% | |
| GAATTACTACTTCTCTCTGT+GGG | + | chr4_3:41993203-41993222 | Msa0641450:CDS | 35.0% | |
| ! | TGGTTTAACTTTCACCATCA+TGG | + | chr4_3:41993434-41993453 | Msa0641450:intron | 35.0% |
| ! | ATTTGGAACTTACACCATGA+TGG | - | chr4_3:41993451-41993470 | None:intergenic | 35.0% |
| !! | ATTTTAATGCCCGTCTTTTC+AGG | + | chr4_3:41993548-41993567 | Msa0641450:intron | 35.0% |
| CTGCTATAAGTTATGCGATT+GGG | + | chr4_3:41993571-41993590 | Msa0641450:intron | 35.0% | |
| TGCTATAAGTTATGCGATTG+GGG | + | chr4_3:41993572-41993591 | Msa0641450:intron | 35.0% | |
| AAATGACAATTGCTCTCTGT+GGG | + | chr4_3:41993855-41993874 | Msa0641450:intron | 35.0% | |
| !! | CGTTCTCTTATCTCTTGTTT+TGG | + | chr4_3:41994112-41994131 | Msa0641450:CDS | 35.0% |
| TTCGCTTCTTATACCAATTC+TGG | - | chr4_3:41994156-41994175 | None:intergenic | 35.0% | |
| TCTTTCGAGAAAACAATCAG+GGG | + | chr4_3:41994188-41994207 | Msa0641450:CDS | 35.0% | |
| !!! | AGGGGTTTTGGAGAATTGAA+AGG | - | chr4_3:41990427-41990446 | None:intergenic | 40.0% |
| ! | AGGAGAAAATGAAGGGGTTT+TGG | - | chr4_3:41990439-41990458 | None:intergenic | 40.0% |
| TGGGAAAGGAGAAAATGAAG+GGG | - | chr4_3:41990445-41990464 | None:intergenic | 40.0% | |
| GTTGGGAAAGGAGAAAATGA+AGG | - | chr4_3:41990447-41990466 | None:intergenic | 40.0% | |
| TGTATGTGGAAAAAGCGGTT+GGG | - | chr4_3:41990464-41990483 | None:intergenic | 40.0% | |
| GCTCTTAGTGATGAAACAGA+AGG | - | chr4_3:41990489-41990508 | None:intergenic | 40.0% | |
| TCTACTACTGCTACTACTAC+AGG | + | chr4_3:41990516-41990535 | Msa0641450:CDS | 40.0% | |
| ! | CTTATTCGAGTAAGTTGGGT+CGG | + | chr4_3:41990709-41990728 | Msa0641450:intron | 40.0% |
| AGCATGATCACCTGAGAATA+TGG | + | chr4_3:41990826-41990845 | Msa0641450:intron | 40.0% | |
| GCATGATCACCTGAGAATAT+GGG | + | chr4_3:41990827-41990846 | Msa0641450:intron | 40.0% | |
| CATGATCACCTGAGAATATG+GGG | + | chr4_3:41990828-41990847 | Msa0641450:intron | 40.0% | |
| ! | ACCTTGTTGACTATGAAGCA+CGG | + | chr4_3:41991064-41991083 | Msa0641450:intron | 40.0% |
| ! | CAGGCTTCTGTTATTTGATC+GGG | + | chr4_3:41991300-41991319 | Msa0641450:intron | 40.0% |
| ATGTCGTTAAATGGCAGTCA+TGG | + | chr4_3:41991500-41991519 | Msa0641450:intron | 40.0% | |
| TCCCATAGCCAATTTGTGAA+GGG | + | chr4_3:41991564-41991583 | Msa0641450:intron | 40.0% | |
| TCCCTTCACAAATTGGCTAT+GGG | - | chr4_3:41991568-41991587 | None:intergenic | 40.0% | |
| ATCCCTTCACAAATTGGCTA+TGG | - | chr4_3:41991569-41991588 | None:intergenic | 40.0% | |
| GCAATAGCGTGTTTGTATAG+CGG | + | chr4_3:41991614-41991633 | Msa0641450:intron | 40.0% | |
| ! | TTAGAAGGCAGTGTTGTTGA+TGG | - | chr4_3:41991655-41991674 | None:intergenic | 40.0% |
| ! | CGCTTAACGGCTTAATCTTT+TGG | + | chr4_3:41991760-41991779 | Msa0641450:intron | 40.0% |
| !! | GCTTAATCTTTTGGGAGAAC+TGG | + | chr4_3:41991769-41991788 | Msa0641450:intron | 40.0% |
| TCTCTTTGACCGAGTAATCA+AGG | + | chr4_3:41991811-41991830 | Msa0641450:intron | 40.0% | |
| TACTAGCTGAAAGGTTGGAT+CGG | - | chr4_3:41991863-41991882 | None:intergenic | 40.0% | |
| TGCTTTACTAGCTGAAAGGT+TGG | - | chr4_3:41991868-41991887 | None:intergenic | 40.0% | |
| ACCTTTCAGCTAGTAAAGCA+AGG | + | chr4_3:41991868-41991887 | Msa0641450:intron | 40.0% | |
| CCTTTCAGCTAGTAAAGCAA+GGG | + | chr4_3:41991869-41991888 | Msa0641450:intron | 40.0% | |
| ! | GCTAGTAAAGCAAGGGTTTT+AGG | + | chr4_3:41991876-41991895 | Msa0641450:intron | 40.0% |
| ! | AGCTTTAACCATTAGACCAG+AGG | - | chr4_3:41991969-41991988 | None:intergenic | 40.0% |
| !!! | CCTTTTTTGGGTTTGAAGAG+TGG | - | chr4_3:41992167-41992186 | None:intergenic | 40.0% |
| CCACTCTTCAAACCCAAAAA+AGG | + | chr4_3:41992164-41992183 | Msa0641450:intron | 40.0% | |
| GGTTGTTGCATAATTCAACC+TGG | + | chr4_3:41992185-41992204 | Msa0641450:intron | 40.0% | |
| ! | TGTTTCTGCTGAGAGCTAAT+TGG | + | chr4_3:41992327-41992346 | Msa0641450:intron | 40.0% |
| ! | CGAACGGATTTCAGAAATTC+TGG | + | chr4_3:41992461-41992480 | Msa0641450:CDS | 40.0% |
| !! | AGTATTGAGCGTGTGAGTTT+TGG | + | chr4_3:41992573-41992592 | Msa0641450:intron | 40.0% |
| ! | AACTTTCAAGTACCCAAGAG+TGG | + | chr4_3:41992726-41992745 | Msa0641450:CDS | 40.0% |
| AGTACCCAAGAGTGGTTATT+AGG | + | chr4_3:41992734-41992753 | Msa0641450:CDS | 40.0% | |
| GTCACCTAATAACCACTCTT+GGG | - | chr4_3:41992741-41992760 | None:intergenic | 40.0% | |
| TGTCACCTAATAACCACTCT+TGG | - | chr4_3:41992742-41992761 | None:intergenic | 40.0% | |
| AGAACATACTGAGTCAAGAG+AGG | - | chr4_3:41993066-41993085 | None:intergenic | 40.0% | |
| ATCAAAACATACCTGCCTTG+AGG | - | chr4_3:41993115-41993134 | None:intergenic | 40.0% | |
| ! | TAATAGTGAGTTGACGAGAC+TGG | - | chr4_3:41993309-41993328 | None:intergenic | 40.0% |
| TTATAGCAGCCTGAAAAGAC+GGG | - | chr4_3:41993560-41993579 | None:intergenic | 40.0% | |
| CTTATAGCAGCCTGAAAAGA+CGG | - | chr4_3:41993561-41993580 | None:intergenic | 40.0% | |
| GCTGCTATAAGTTATGCGAT+TGG | + | chr4_3:41993570-41993589 | Msa0641450:intron | 40.0% | |
| GAAATGACAATTGCTCTCTG+TGG | + | chr4_3:41993854-41993873 | Msa0641450:intron | 40.0% | |
| TATTTGAGGAACGGTTTCAC+TGG | - | chr4_3:41994004-41994023 | None:intergenic | 40.0% | |
| TAACAACAGAGAACGCTAAC+TGG | - | chr4_3:41994091-41994110 | None:intergenic | 40.0% | |
| GTATAGCACTTTCATCTCCA+AGG | + | chr4_3:41994216-41994235 | Msa0641450:CDS | 40.0% | |
| AAAGTCCATAAATTGCTGCC+GGG | - | chr4_3:41994250-41994269 | None:intergenic | 40.0% | |
| CAAAGTCCATAAATTGCTGC+CGG | - | chr4_3:41994251-41994270 | None:intergenic | 40.0% | |
| GGCAGCAATTTATGGACTTT+GGG | + | chr4_3:41994250-41994269 | Msa0641450:CDS | 40.0% | |
| !! | AAAGGATTAGCCAAGGGAGT+AGG | + | chr4_3:41990319-41990338 | Msa0641450:five_prime_UTR | 45.0% |
| !! | AAGGATTAGCCAAGGGAGTA+GGG | + | chr4_3:41990320-41990339 | Msa0641450:five_prime_UTR | 45.0% |
| GTGTATGTGGAAAAAGCGGT+TGG | - | chr4_3:41990465-41990484 | None:intergenic | 45.0% | |
| ! | AGGGGTGTATGTGGAAAAAG+CGG | - | chr4_3:41990469-41990488 | None:intergenic | 45.0% |
| ! | TGAAACAGAAGGGGTGTATG+TGG | - | chr4_3:41990478-41990497 | None:intergenic | 45.0% |
| AGCAGAAGGAACTACGAGAA+GGG | - | chr4_3:41990563-41990582 | None:intergenic | 45.0% | |
| AAGCAGAAGGAACTACGAGA+AGG | - | chr4_3:41990564-41990583 | None:intergenic | 45.0% | |
| CATCACATCCCCATATTCTC+AGG | - | chr4_3:41990839-41990858 | None:intergenic | 45.0% | |
| TCCGTGCTTCATAGTCAACA+AGG | - | chr4_3:41991068-41991087 | None:intergenic | 45.0% | |
| CACGGATACAGATACAGACA+CGG | + | chr4_3:41991082-41991101 | Msa0641450:intron | 45.0% | |
| TACAGATACAGACACGGACA+CGG | + | chr4_3:41991088-41991107 | Msa0641450:intron | 45.0% | |
| TCTACCACATCATTCCACCT+TGG | - | chr4_3:41991531-41991550 | None:intergenic | 45.0% | |
| CTCCCATAGCCAATTTGTGA+AGG | + | chr4_3:41991563-41991582 | Msa0641450:intron | 45.0% | |
| GCAGGAATCCCTTCACAAAT+TGG | - | chr4_3:41991575-41991594 | None:intergenic | 45.0% | |
| AAACACGCTATTGCAGCCTA+TGG | - | chr4_3:41991608-41991627 | None:intergenic | 45.0% | |
| GTGCAGCAACCTTGATTACT+CGG | - | chr4_3:41991823-41991842 | None:intergenic | 45.0% | |
| CCCTTGCTTTACTAGCTGAA+AGG | - | chr4_3:41991872-41991891 | None:intergenic | 45.0% | |
| AAAAAGGGCCTCTGGTCTAA+TGG | + | chr4_3:41991958-41991977 | Msa0641450:intron | 45.0% | |
| !! | TGCCTACAAATTTGTTGGGC+CGG | + | chr4_3:41992127-41992146 | Msa0641450:intron | 45.0% |
| CACAGAATTCGCAACTGGAT+CGG | - | chr4_3:41992616-41992635 | None:intergenic | 45.0% | |
| CCAAACACAGAATTCGCAAC+TGG | - | chr4_3:41992621-41992640 | None:intergenic | 45.0% | |
| CCAGTTGCGAATTCTGTGTT+TGG | + | chr4_3:41992618-41992637 | Msa0641450:intron | 45.0% | |
| GGAAGATGACTGCAAAGGTA+TGG | + | chr4_3:41992780-41992799 | Msa0641450:intron | 45.0% | |
| TCAGTCTTGCTCTGTTGTCT+TGG | - | chr4_3:41993006-41993025 | None:intergenic | 45.0% | |
| AGTCGGTAACACTTACCTCA+AGG | + | chr4_3:41993097-41993116 | Msa0641450:CDS | 45.0% | |
| CTACTTCTCTCTGTGGGTAT+TGG | + | chr4_3:41993209-41993228 | Msa0641450:CDS | 45.0% | |
| !! | TCTCTCTGTGGGTATTGGAT+TGG | + | chr4_3:41993214-41993233 | Msa0641450:CDS | 45.0% |
| !! | CTCTCTGTGGGTATTGGATT+GGG | + | chr4_3:41993215-41993234 | Msa0641450:CDS | 45.0% |
| ! | GGTATTGGATTGGGTTGTAG+CGG | + | chr4_3:41993224-41993243 | Msa0641450:CDS | 45.0% |
| ACGCACTTAGACAACATGTG+TGG | - | chr4_3:41993508-41993527 | None:intergenic | 45.0% | |
| AAGTTAAATAGGGGGAGCCT+TGG | + | chr4_3:41993802-41993821 | Msa0641450:intron | 45.0% | |
| CATGTTGATACAGGAGCTGA+AGG | - | chr4_3:41993969-41993988 | None:intergenic | 45.0% | |
| TGGTGTCTGCATGTTGATAC+AGG | - | chr4_3:41993978-41993997 | None:intergenic | 45.0% | |
| AGGAACGGTTTCACTGGATA+TGG | - | chr4_3:41993998-41994017 | None:intergenic | 45.0% | |
| GAGAAAACAATCAGGGGTAG+CGG | + | chr4_3:41994194-41994213 | Msa0641450:CDS | 45.0% | |
| CGGCAGCAATTTATGGACTT+TGG | + | chr4_3:41994249-41994268 | Msa0641450:CDS | 45.0% | |
| !!! | TTTTTATAATATTTTGTTTT+TGG | + | chr4_3:41990776-41990795 | Msa0641450:intron | 5.0% |
| !! | ATACTTAAAAAAATTAATAA+GGG | - | chr4_3:41990930-41990949 | None:intergenic | 5.0% |
| !! | TATACTTAAAAAAATTAATA+AGG | - | chr4_3:41990931-41990950 | None:intergenic | 5.0% |
| !! | TTAAACTAAAAATAAAATAT+TGG | - | chr4_3:41991906-41991925 | None:intergenic | 5.0% |
| ATTAGCCAAGGGAGTAGGGT+GGG | + | chr4_3:41990324-41990343 | Msa0641450:five_prime_UTR | 50.0% | |
| GGCAGCACAGCATAGATAGA+TGG | - | chr4_3:41990370-41990389 | None:intergenic | 50.0% | |
| CTATCTATGCTGTGCTGCCA+TGG | + | chr4_3:41990371-41990390 | Msa0641450:exon | 50.0% | |
| GTGGAAAAAGCGGTTGGGAA+AGG | - | chr4_3:41990459-41990478 | None:intergenic | 50.0% | |
| CAGAAGGAACTACGAGAAGG+GGG | - | chr4_3:41990561-41990580 | None:intergenic | 50.0% | |
| GCAGAAGGAACTACGAGAAG+GGG | - | chr4_3:41990562-41990581 | None:intergenic | 50.0% | |
| ! | TCCTCAGACTAGTTGTGTCC+CGG | - | chr4_3:41991213-41991232 | None:intergenic | 50.0% |
| TTGTGAAGGGATTCCTGCCA+TGG | + | chr4_3:41991577-41991596 | Msa0641450:intron | 50.0% | |
| ! | GAAGGCAGTGTTGTTGATGG+CGG | - | chr4_3:41991652-41991671 | None:intergenic | 50.0% |
| CTGCACACGATAGCATTGCA+GGG | + | chr4_3:41991837-41991856 | Msa0641450:intron | 50.0% | |
| GTGCTAGCAACACACTCTGT+AGG | + | chr4_3:41992008-41992027 | Msa0641450:intron | 50.0% | |
| CACCGGCCCAACAAATTTGT+AGG | - | chr4_3:41992132-41992151 | None:intergenic | 50.0% | |
| TTCGCAACTGGATCGGTACA+AGG | - | chr4_3:41992609-41992628 | None:intergenic | 50.0% | |
| GGTAACACTTACCTCAAGGC+AGG | + | chr4_3:41993101-41993120 | Msa0641450:CDS | 50.0% | |
| ! | ATGCGATTGGGGTCCTTTTC+AGG | + | chr4_3:41993583-41993602 | Msa0641450:intron | 50.0% |
| ACAACTTTACCGTTGCGCCA+AGG | - | chr4_3:41993822-41993841 | None:intergenic | 50.0% | |
| ATCTCCAAGGCTTGTGATCC+CGG | + | chr4_3:41994229-41994248 | Msa0641450:CDS | 50.0% | |
| GTGATCCCGGCAGCAATTTA+TGG | + | chr4_3:41994242-41994261 | Msa0641450:CDS | 50.0% | |
| ! | GATTAGCCAAGGGAGTAGGG+TGG | + | chr4_3:41990323-41990342 | Msa0641450:five_prime_UTR | 55.0% |
| TTAGCCAAGGGAGTAGGGTG+GGG | + | chr4_3:41990325-41990344 | Msa0641450:five_prime_UTR | 55.0% | |
| TGTCGTGTCTGTGTCGTGTC+TGG | - | chr4_3:41991117-41991136 | None:intergenic | 55.0% | |
| ! | ACCGGGACACAACTAGTCTG+AGG | + | chr4_3:41991209-41991228 | Msa0641450:intron | 55.0% |
| GCTGCCAAGGTGGAATGATG+TGG | + | chr4_3:41991524-41991543 | Msa0641450:intron | 55.0% | |
| TGAAGGGATTCCTGCCATGG+CGG | + | chr4_3:41991580-41991599 | Msa0641450:intron | 55.0% | |
| !! | GCAGTGTTGTTGATGGCGGA+AGG | - | chr4_3:41991648-41991667 | None:intergenic | 55.0% |
| GCTGCACACGATAGCATTGC+AGG | + | chr4_3:41991836-41991855 | Msa0641450:intron | 55.0% | |
| !! | CAAATTTGTTGGGCCGGTGC+TGG | + | chr4_3:41992133-41992152 | Msa0641450:intron | 55.0% |
| TAGCCAAGGGAGTAGGGTGG+GGG | + | chr4_3:41990326-41990345 | Msa0641450:five_prime_UTR | 60.0% | |
| GTCGGACACGTGTCTGACAC+CGG | + | chr4_3:41991191-41991210 | Msa0641450:intron | 60.0% | |
| TCGGACACGTGTCTGACACC+GGG | + | chr4_3:41991192-41991211 | Msa0641450:intron | 60.0% | |
| TGGGAGAACTGGTCGCGATG+TGG | + | chr4_3:41991780-41991799 | Msa0641450:intron | 60.0% | |
| AGTGGACAGTGCTCCAGCAC+CGG | - | chr4_3:41992149-41992168 | None:intergenic | 60.0% | |
| AGCCAAGGGAGTAGGGTGGG+GGG | + | chr4_3:41990327-41990346 | Msa0641450:five_prime_UTR | 65.0% | |
| TACCCCCCACCCTACTCCCT+TGG | - | chr4_3:41990332-41990351 | None:intergenic | 65.0% | |
| AGGGAGTAGGGTGGGGGGTA+AGG | + | chr4_3:41990332-41990351 | Msa0641450:five_prime_UTR | 65.0% | |
| TGGCAGTCATGGCGCTGCCA+AGG | + | chr4_3:41991511-41991530 | Msa0641450:intron | 65.0% | |
| CAGTCATGGCGCTGCCAAGG+TGG | + | chr4_3:41991514-41991533 | Msa0641450:intron | 65.0% | |
| !! | TCCTGCCATGGCGGTGCCAT+AGG | + | chr4_3:41991589-41991608 | Msa0641450:intron | 65.0% |
| TGCAGCCTATGGCACCGCCA+TGG | - | chr4_3:41991597-41991616 | None:intergenic | 65.0% | |
| TAGGGGGAGCCTTGGCGCAA+CGG | + | chr4_3:41993810-41993829 | Msa0641450:intron | 65.0% | |
| GCTGCCGGGATCACAAGCCT+TGG | - | chr4_3:41994236-41994255 | None:intergenic | 65.0% | |
| GCCTATGGCACCGCCATGGC+AGG | - | chr4_3:41991593-41991612 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 41990311 | 41994283 | 41990311 | ID=Msa0641450;Name=Msa0641450 |
| chr4_3 | mRNA | 41990311 | 41994283 | 41990311 | ID=Msa0641450-mRNA-1;Parent=Msa0641450;Name=Msa0641450-mRNA-1;_AED=0.30;_eAED=0.30;_QI=79|0.33|0.57|1|0.66|0.57|7|0|282 |
| chr4_3 | exon | 41990311 | 41990537 | 41990311 | ID=Msa0641450-mRNA-1:exon:9443;Parent=Msa0641450-mRNA-1 |
| chr4_3 | exon | 41992369 | 41992538 | 41992369 | ID=Msa0641450-mRNA-1:exon:9444;Parent=Msa0641450-mRNA-1 |
| chr4_3 | exon | 41992692 | 41992796 | 41992692 | ID=Msa0641450-mRNA-1:exon:9445;Parent=Msa0641450-mRNA-1 |
| chr4_3 | exon | 41992921 | 41992936 | 41992921 | ID=Msa0641450-mRNA-1:exon:9446;Parent=Msa0641450-mRNA-1 |
| chr4_3 | exon | 41992998 | 41993122 | 41992998 | ID=Msa0641450-mRNA-1:exon:9447;Parent=Msa0641450-mRNA-1 |
| chr4_3 | exon | 41993194 | 41993274 | 41993194 | ID=Msa0641450-mRNA-1:exon:9448;Parent=Msa0641450-mRNA-1 |
| chr4_3 | exon | 41994083 | 41994283 | 41994083 | ID=Msa0641450-mRNA-1:exon:9449;Parent=Msa0641450-mRNA-1 |
| chr4_3 | five_prime_UTR | 41990311 | 41990389 | 41990311 | ID=Msa0641450-mRNA-1:five_prime_utr;Parent=Msa0641450-mRNA-1 |
| chr4_3 | CDS | 41990390 | 41990537 | 41990390 | ID=Msa0641450-mRNA-1:cds;Parent=Msa0641450-mRNA-1 |
| chr4_3 | CDS | 41992369 | 41992538 | 41992369 | ID=Msa0641450-mRNA-1:cds;Parent=Msa0641450-mRNA-1 |
| chr4_3 | CDS | 41992692 | 41992796 | 41992692 | ID=Msa0641450-mRNA-1:cds;Parent=Msa0641450-mRNA-1 |
| chr4_3 | CDS | 41992921 | 41992936 | 41992921 | ID=Msa0641450-mRNA-1:cds;Parent=Msa0641450-mRNA-1 |
| chr4_3 | CDS | 41992998 | 41993122 | 41992998 | ID=Msa0641450-mRNA-1:cds;Parent=Msa0641450-mRNA-1 |
| chr4_3 | CDS | 41993194 | 41993274 | 41993194 | ID=Msa0641450-mRNA-1:cds;Parent=Msa0641450-mRNA-1 |
| chr4_3 | CDS | 41994083 | 41994283 | 41994083 | ID=Msa0641450-mRNA-1:cds;Parent=Msa0641450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
