AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0327860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0327860 MtrunA17_Chr2g0309391 93.993 283 13 1 1 283 1 279 0.0 508
Msa0327860 MtrunA17_Chr3g0122831 40.367 109 64 1 62 170 14 121 1.11e-19 84.0
Msa0327860 MtrunA17_Chr2g0322301 37.736 106 65 1 65 170 26 130 9.94e-18 78.6
Msa0327860 MtrunA17_Chr7g0275651 35.106 94 60 1 84 177 114 206 8.21e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0327860 AT3G12685.1 45.148 237 71 5 46 282 35 212 1.78e-58 186
Msa0327860 AT1G24350.2 38.679 106 64 1 65 170 22 126 1.87e-18 80.5
Msa0327860 AT1G24350.4 38.679 106 64 1 65 170 22 126 2.21e-18 80.1
Msa0327860 AT1G24350.5 38.679 106 64 1 65 170 22 126 2.95e-18 80.1
Msa0327860 AT1G24350.1 38.679 106 64 1 65 170 22 126 7.98e-18 79.3
Msa0327860 AT1G24350.3 38.679 106 64 1 65 170 22 126 1.02e-17 79.3
Msa0327860 AT3G21610.1 38.318 107 65 1 64 170 32 137 1.54e-17 78.6
Msa0327860 AT1G67600.1 36.792 106 66 1 65 170 18 122 2.81e-16 75.1
Msa0327860 AT3G21610.2 41.772 79 46 0 92 170 7 85 3.45e-15 70.9
Msa0327860 AT3G61770.1 31.933 119 80 1 59 177 134 251 3.63e-14 71.6

Find 68 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCTTGAGTTTCTGCTTT+TGG 0.171124 2_4:-39826131 None:intergenic
TCTATAACCTATTCAATATA+AGG 0.257270 2_4:-39826454 None:intergenic
GTTCCAAGAAAGCACTTCTT+TGG 0.261253 2_4:+39826163 Msa0327860:CDS
CGCTCAAATTGCTCATAATA+AGG 0.268738 2_4:+39822686 Msa0327860:CDS
CTTTATGTTTGGAATGTAAA+TGG 0.270680 2_4:-39826070 None:intergenic
GTTCCAAAGAAGTGCTTTCT+TGG 0.295867 2_4:-39826166 None:intergenic
TTGAACTGCGCAAGCAAAAT+AGG 0.307337 2_4:+39822403 Msa0327860:five_prime_UTR
GAAACATGTTTGGTTGGTTA+AGG 0.332531 2_4:-39822465 None:intergenic
ATTTCTTCTCTTGCTGCTGC+TGG 0.351086 2_4:+39822648 Msa0327860:CDS
TACAGAAACACGGAAGTAAA+TGG 0.351210 2_4:-39823416 None:intergenic
TATCAGACCAACTTTATGTT+TGG 0.354166 2_4:-39826081 None:intergenic
GCTGGAGTTTCAATGGCAAT+TGG 0.360865 2_4:+39823380 Msa0327860:CDS
AAGTGCTTTCTTGGAACAAA+AGG 0.375096 2_4:-39826157 None:intergenic
ATTTATCATTATTGATCAAA+TGG 0.387558 2_4:+39826567 Msa0327860:three_prime_UTR
TATTATACCTTATATTGAAT+AGG 0.389991 2_4:+39826447 Msa0327860:three_prime_UTR
GTTGTAGCTGGTGGTTTACT+TGG 0.399977 2_4:+39826356 Msa0327860:CDS
ACCATCAGCAACTAACTTTG+AGG 0.405848 2_4:-39826291 None:intergenic
GCTTAGGTTCTGATTGCAGC+TGG 0.410074 2_4:+39823362 Msa0327860:intron
AGTAAACAATGAAACATGTT+TGG 0.413668 2_4:-39822475 None:intergenic
CAGGGTGTAAGAAGAGAAGT+AGG 0.415373 2_4:+39825999 Msa0327860:intron
GTGGCTTGTGCAACATTACT+TGG 0.416239 2_4:+39823623 Msa0327860:CDS
GTAAATGGTTGACATCCATT+TGG 0.417219 2_4:-39826055 None:intergenic
CAACAAACTACTTCTCCAAA+TGG 0.418502 2_4:+39826040 Msa0327860:CDS
AGTGAGGGAAATTGAGAGGA+AGG 0.419165 2_4:-39822546 None:intergenic
GATTGCAGCTGGAGTTTCAA+TGG 0.421077 2_4:+39823373 Msa0327860:CDS
CTGGAGTTTCAATGGCAATT+GGG 0.423404 2_4:+39823381 Msa0327860:CDS
GGTCTTGCAGTTGTGTATGC+TGG 0.423581 2_4:+39823801 Msa0327860:CDS
GCAAATGTATTAGTTAAATC+AGG 0.423899 2_4:+39826203 Msa0327860:CDS
AATTGTTGATGATGAAGAAA+TGG 0.437429 2_4:-39822582 None:intergenic
CATACAGAAGAGTGTGAAGA+AGG 0.444111 2_4:-39823485 None:intergenic
TTTACTTCCGTGTTTCTGTA+TGG 0.449321 2_4:+39823419 Msa0327860:CDS
TCTGATTATGTATGATGCTC+AGG 0.450552 2_4:+39823824 Msa0327860:CDS
AACAATGAAACATGTTTGGT+TGG 0.464548 2_4:-39822471 None:intergenic
TTTGGTGGATTGGATGATCC+AGG 0.472553 2_4:-39826113 None:intergenic
TTACATTCCAAACATAAAGT+TGG 0.473249 2_4:+39826074 Msa0327860:CDS
TTGGTTAAGGTAACATGCTA+TGG 0.478697 2_4:-39822452 None:intergenic
CCAAATTATCTTACCTCTCA+AGG 0.479425 2_4:-39823646 None:intergenic
ATCAAGGCTCTTATTCAAGC+TGG 0.483515 2_4:+39823455 Msa0327860:CDS
TGGCAAAGAGTTTGATATCA+AGG 0.498368 2_4:+39823439 Msa0327860:CDS
TGGATTTCTTTGTTTGAGTG+AGG 0.504915 2_4:-39822562 None:intergenic
GGGAAATTGAGAGGAAGGAA+TGG 0.511577 2_4:-39822541 None:intergenic
TTTGAGTGAGGGAAATTGAG+AGG 0.515160 2_4:-39822550 None:intergenic
TCCTTTCTGCGAAAACTGAA+AGG 0.522224 2_4:-39822606 None:intergenic
GGAAATTGAGAGGAAGGAAT+GGG 0.529054 2_4:-39822540 None:intergenic
AGCAAGAGAAGAAATTCTAA+AGG 0.529822 2_4:-39822640 None:intergenic
ACATTTGCATTAGCTTGTTG+TGG 0.529942 2_4:-39826188 None:intergenic
AGTGCTTTCTTGGAACAAAA+GGG 0.539067 2_4:-39826156 None:intergenic
GGATTTCTTTGTTTGAGTGA+GGG 0.539654 2_4:-39822561 None:intergenic
CAACATTACTTGGCCTTGAG+AGG 0.541258 2_4:+39823633 Msa0327860:CDS
ACCTCAAAGTTAGTTGCTGA+TGG 0.541385 2_4:+39826290 Msa0327860:CDS
AAGTCAAGTCAGTAATAGCT+AGG 0.551513 2_4:+39826497 Msa0327860:three_prime_UTR
GAGAAGTAGGGATTCATGCT+AGG 0.554119 2_4:+39826012 Msa0327860:CDS
CAAAAGCAGAAACTCAAGAA+AGG 0.564432 2_4:+39826132 Msa0327860:CDS
TGCATCTTCTAAGAAATCAG+AGG 0.571365 2_4:-39826261 None:intergenic
AGGGTGTAAGAAGAGAAGTA+GGG 0.572177 2_4:+39826000 Msa0327860:intron
AAACACGGAAGTAAATGGCT+TGG 0.572524 2_4:-39823411 None:intergenic
AAGGCTCTTATTCAAGCTGG+AGG 0.574041 2_4:+39823458 Msa0327860:CDS
ATTGTAGCTCCTCGTCACAT+TGG 0.583988 2_4:-39826238 None:intergenic
CTGCCATTAAAAGAAACTGT+TGG 0.586551 2_4:+39826317 Msa0327860:CDS
ACTGAGGTTGAAGTTGTAGC+TGG 0.595839 2_4:+39826344 Msa0327860:CDS
CAAAATAAGCCAATGTGACG+AGG 0.599512 2_4:+39826229 Msa0327860:CDS
CATGCTATGGATAATATGAG+AGG 0.618536 2_4:-39822439 None:intergenic
CTCTTTGCCATACAGAAACA+CGG 0.620649 2_4:-39823426 None:intergenic
ATACAGAAGAGTGTGAAGAA+GGG 0.627523 2_4:-39823484 None:intergenic
AGGCTCTTATTCAAGCTGGA+GGG 0.631515 2_4:+39823459 Msa0327860:CDS
GAGGTTGAAGTTGTAGCTGG+TGG 0.638885 2_4:+39826347 Msa0327860:CDS
GGTCTGATAAACTCTCAACC+TGG 0.640775 2_4:+39826095 Msa0327860:CDS
AGAAACTGTTGGTCATACTG+AGG 0.680359 2_4:+39826328 Msa0327860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTAGATTATTAATTC+AGG + chr2_4:39824675-39824694 Msa0327860:intron 10.0%
!!! CTAATACCATTTTAAAATTT+GGG - chr2_4:39823068-39823087 None:intergenic 15.0%
!!! TCTAATACCATTTTAAAATT+TGG - chr2_4:39823069-39823088 None:intergenic 15.0%
!!! TAGTTGTTTAAATTTTCTTT+TGG + chr2_4:39823590-39823609 Msa0327860:intron 15.0%
!! TATTATACCTTATATTGAAT+AGG + chr2_4:39826447-39826466 Msa0327860:three_prime_UTR 15.0%
!! ATTTATCATTATTGATCAAA+TGG + chr2_4:39826567-39826586 Msa0327860:three_prime_UTR 15.0%
!! AAAACAAGTAATACGAAAAT+GGG - chr2_4:39822715-39822734 None:intergenic 20.0%
!! AAAAACAAGTAATACGAAAA+TGG - chr2_4:39822716-39822735 None:intergenic 20.0%
!!! CAAGTTTTTGTTTTTCTTAT+TGG + chr2_4:39822763-39822782 Msa0327860:intron 20.0%
!!! GTTTAAATTTTCTTTTGGAT+AGG + chr2_4:39823595-39823614 Msa0327860:intron 20.0%
!! ATTTACTAATAATAACACCA+TGG - chr2_4:39824081-39824100 None:intergenic 20.0%
!! GTTATTATTAGTAAATAAGC+AGG + chr2_4:39824085-39824104 Msa0327860:intron 20.0%
!! ATTGATCAATGAAGATAATA+AGG + chr2_4:39824318-39824337 Msa0327860:intron 20.0%
!! TATATTTCAAAGTGAACATT+GGG - chr2_4:39824387-39824406 None:intergenic 20.0%
!! ATATATTTCAAAGTGAACAT+TGG - chr2_4:39824388-39824407 None:intergenic 20.0%
!! TATGATATTGTTATGTAACT+CGG - chr2_4:39824436-39824455 None:intergenic 20.0%
!!! ATTAAGAAAGTCTTTAAAGA+GGG + chr2_4:39824732-39824751 Msa0327860:intron 20.0%
!! AATGTTCTTAAAAGCTTAAA+AGG + chr2_4:39824807-39824826 Msa0327860:intron 20.0%
!! AATATATCCTCTAAGTATAA+AGG - chr2_4:39824903-39824922 None:intergenic 20.0%
!!! TATTTACTTATTTCTTGTGA+AGG + chr2_4:39825004-39825023 Msa0327860:intron 20.0%
!! ATAAGCTGAAAATAGTTTAT+GGG - chr2_4:39825256-39825275 None:intergenic 20.0%
!! AATTTAATGTTGTGATTTAG+AGG + chr2_4:39825691-39825710 Msa0327860:intron 20.0%
!!! CTTCTAATGTTTTAAAAATC+GGG - chr2_4:39825826-39825845 None:intergenic 20.0%
!!! CCTTCTAATGTTTTAAAAAT+CGG - chr2_4:39825827-39825846 None:intergenic 20.0%
!!! CGATTTTTAAAACATTAGAA+GGG + chr2_4:39825825-39825844 Msa0327860:intron 20.0%
!! TTCTATAAACAGAAATTACA+AGG - chr2_4:39825908-39825927 None:intergenic 20.0%
!! TCTATAACCTATTCAATATA+AGG - chr2_4:39826457-39826476 None:intergenic 20.0%
! AGTAAACAATGAAACATGTT+TGG - chr2_4:39822478-39822497 None:intergenic 25.0%
!!! AATTGTTGATGATGAAGAAA+TGG - chr2_4:39822585-39822604 None:intergenic 25.0%
! AAACAAGTAATACGAAAATG+GGG - chr2_4:39822714-39822733 None:intergenic 25.0%
!! TTTTATGTCTTTCCAAATTC+TGG + chr2_4:39822732-39822751 Msa0327860:intron 25.0%
! TTTATGTCTTTCCAAATTCT+GGG + chr2_4:39822733-39822752 Msa0327860:intron 25.0%
! TTGAATGTAATGTTATGTGT+CGG - chr2_4:39822881-39822900 None:intergenic 25.0%
!!! GATCAACCCAAATTTTAAAA+TGG + chr2_4:39823059-39823078 Msa0327860:intron 25.0%
! AAAATCGATCTATACTATGA+GGG - chr2_4:39823242-39823261 None:intergenic 25.0%
!!! ATAGTATAGATCGATTTTGT+AGG + chr2_4:39823244-39823263 Msa0327860:intron 25.0%
!!! TGTTGTTTTATTTGCTGAAT+TGG + chr2_4:39823309-39823328 Msa0327860:intron 25.0%
!!! GTTGTTTTATTTGCTGAATT+GGG + chr2_4:39823310-39823329 Msa0327860:intron 25.0%
!! TTTGTGATATTTTTCTGCTT+AGG + chr2_4:39823346-39823365 Msa0327860:intron 25.0%
!!! TCTTGTTAGATTCCATTTTT+TGG + chr2_4:39823855-39823874 Msa0327860:intron 25.0%
!!! CTTGTTAGATTCCATTTTTT+GGG + chr2_4:39823856-39823875 Msa0327860:intron 25.0%
! GAAGTAAATAACCCAAAAAA+TGG - chr2_4:39823870-39823889 None:intergenic 25.0%
! AAACTTAATGAAGGAATCTT+AGG + chr2_4:39823960-39823979 Msa0327860:intron 25.0%
! TAATCAATGATCAAACTATG+TGG + chr2_4:39824040-39824059 Msa0327860:intron 25.0%
! AATAATAACACCATGGTAAT+TGG - chr2_4:39824074-39824093 None:intergenic 25.0%
! GGTAAATCATTTCTAATAAC+CGG + chr2_4:39824197-39824216 Msa0327860:intron 25.0%
! AAAATGACAGAATTTAACCA+TGG + chr2_4:39824247-39824266 Msa0327860:intron 25.0%
!! AAATGATTTTATCTCAGACA+TGG + chr2_4:39824593-39824612 Msa0327860:intron 25.0%
! TTAAAGACTTTCTTAATCTG+AGG - chr2_4:39824729-39824748 None:intergenic 25.0%
!! GATTAAGAAAGTCTTTAAAG+AGG + chr2_4:39824731-39824750 Msa0327860:intron 25.0%
! GTGTGTAGTAAACAATAAAA+GGG - chr2_4:39824979-39824998 None:intergenic 25.0%
! TGTGTGTAGTAAACAATAAA+AGG - chr2_4:39824980-39824999 None:intergenic 25.0%
! AAAAGAAAAGTTGTCTTCAA+TGG - chr2_4:39825093-39825112 None:intergenic 25.0%
! TCAAATAAGTCAATCAAAAG+AGG - chr2_4:39825166-39825185 None:intergenic 25.0%
! GATAAGCTGAAAATAGTTTA+TGG - chr2_4:39825257-39825276 None:intergenic 25.0%
!!! TGTTACTTTTTTCACGTTAA+TGG + chr2_4:39825603-39825622 Msa0327860:intron 25.0%
! GTATAAATATCCCTATTAGT+CGG + chr2_4:39825751-39825770 Msa0327860:intron 25.0%
!!! CCGATTTTTAAAACATTAGA+AGG + chr2_4:39825824-39825843 Msa0327860:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + chr2_4:39825852-39825871 Msa0327860:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG + chr2_4:39825853-39825872 Msa0327860:intron 25.0%
!! TTTTGTAGATAGTATAACTG+AGG - chr2_4:39825879-39825898 None:intergenic 25.0%
!! CTTTATGTTTGGAATGTAAA+TGG - chr2_4:39826073-39826092 None:intergenic 25.0%
! TTACATTCCAAACATAAAGT+TGG + chr2_4:39826074-39826093 Msa0327860:CDS 25.0%
! GCAAATGTATTAGTTAAATC+AGG + chr2_4:39826203-39826222 Msa0327860:CDS 25.0%
AACAATGAAACATGTTTGGT+TGG - chr2_4:39822474-39822493 None:intergenic 30.0%
AGCAAGAGAAGAAATTCTAA+AGG - chr2_4:39822643-39822662 None:intergenic 30.0%
!!! TGGTTTTATAAGCTAGCTAT+TGG + chr2_4:39822783-39822802 Msa0327860:intron 30.0%
! ACGTTTTTGTGAACATGTTT+AGG - chr2_4:39823000-39823019 None:intergenic 30.0%
CACAAAAACGTGTTATAAGA+TGG + chr2_4:39823009-39823028 Msa0327860:intron 30.0%
!! AGATGGTATTAGAGTTTTGT+AGG + chr2_4:39823026-39823045 Msa0327860:intron 30.0%
GAGTCTATCAAATATTCGTT+AGG + chr2_4:39823087-39823106 Msa0327860:intron 30.0%
CAAAATCGATCTATACTATG+AGG - chr2_4:39823243-39823262 None:intergenic 30.0%
! AAGTAGGATTTACTGGTTAA+GGG - chr2_4:39823520-39823539 None:intergenic 30.0%
! AAAGTAGGATTTACTGGTTA+AGG - chr2_4:39823521-39823540 None:intergenic 30.0%
GAAATGAAAGTAGGATTTAC+TGG - chr2_4:39823527-39823546 None:intergenic 30.0%
TGTTTATTATCCAAATGCAG+AGG + chr2_4:39823759-39823778 Msa0327860:intron 30.0%
GACTATGTCAAACTTAATGA+AGG + chr2_4:39823951-39823970 Msa0327860:intron 30.0%
TGTATGAAATGGTATGTTTC+TGG + chr2_4:39824161-39824180 Msa0327860:intron 30.0%
TCAATGAAGATAATAAGGAG+TGG + chr2_4:39824323-39824342 Msa0327860:intron 30.0%
TCATTCACTATGTTTACGAT+AGG - chr2_4:39824520-39824539 None:intergenic 30.0%
ATCGTAAACATAGTGAATGA+AGG + chr2_4:39824520-39824539 Msa0327860:intron 30.0%
AGGTTCTACAAAGAAAATAG+TGG + chr2_4:39824540-39824559 Msa0327860:intron 30.0%
! TTTATCTCAGACATGGATTA+TGG + chr2_4:39824600-39824619 Msa0327860:intron 30.0%
AAAAGCTTAAAAGGCTTCAA+TGG + chr2_4:39824816-39824835 Msa0327860:intron 30.0%
AAAGCTTAAAAGGCTTCAAT+GGG + chr2_4:39824817-39824836 Msa0327860:intron 30.0%
CTATGATTTCTATACCGTAA+GGG - chr2_4:39824869-39824888 None:intergenic 30.0%
ACTATGATTTCTATACCGTA+AGG - chr2_4:39824870-39824889 None:intergenic 30.0%
TCCTCTAAGTATAAAGGATA+TGG - chr2_4:39824897-39824916 None:intergenic 30.0%
TCATAGTGAGGATAATTACA+GGG - chr2_4:39825059-39825078 None:intergenic 30.0%
TACCACAGATGAAAACTTAT+TGG + chr2_4:39825124-39825143 Msa0327860:intron 30.0%
! TACCAATAAGTTTTCATCTG+TGG - chr2_4:39825129-39825148 None:intergenic 30.0%
AGTCTCATAAGTACTTATGT+CGG - chr2_4:39825198-39825217 None:intergenic 30.0%
AGATGAAGAAAACTGAAACA+AGG - chr2_4:39825409-39825428 None:intergenic 30.0%
CAATTGCAGATAAAGAAGAA+TGG - chr2_4:39825469-39825488 None:intergenic 30.0%
AGTAAAAGAAACTCGCTATA+TGG - chr2_4:39825492-39825511 None:intergenic 30.0%
ATATTTATACACACACGCAT+AGG - chr2_4:39825741-39825760 None:intergenic 30.0%
!!! CTAATGTTTTAAAAATCGGG+AGG - chr2_4:39825823-39825842 None:intergenic 30.0%
TATCAGACCAACTTTATGTT+TGG - chr2_4:39826084-39826103 None:intergenic 30.0%
! TGACCAACAGTTTCTTTTAA+TGG - chr2_4:39826323-39826342 None:intergenic 30.0%
!!! GTTTACTTGGATTTTTGGTT+GGG + chr2_4:39826369-39826388 Msa0327860:CDS 30.0%
CATGCTATGGATAATATGAG+AGG - chr2_4:39822442-39822461 None:intergenic 35.0%
TTGGTTAAGGTAACATGCTA+TGG - chr2_4:39822455-39822474 None:intergenic 35.0%
! GAAACATGTTTGGTTGGTTA+AGG - chr2_4:39822468-39822487 None:intergenic 35.0%
! GGATTTCTTTGTTTGAGTGA+GGG - chr2_4:39822564-39822583 None:intergenic 35.0%
! TGGATTTCTTTGTTTGAGTG+AGG - chr2_4:39822565-39822584 None:intergenic 35.0%
CGCTCAAATTGCTCATAATA+AGG + chr2_4:39822686-39822705 Msa0327860:CDS 35.0%
CTTGAACAAAACCCAGAATT+TGG - chr2_4:39822747-39822766 None:intergenic 35.0%
! ATGTAATGTTATGTGTCGGT+CGG - chr2_4:39822877-39822896 None:intergenic 35.0%
!!! AGGCTACTTTTACACACTAT+CGG + chr2_4:39823107-39823126 Msa0327860:intron 35.0%
AGACTATATCTCATCCAATG+TGG - chr2_4:39823191-39823210 None:intergenic 35.0%
TGAGCAAGTGTTTATAAGTG+AGG + chr2_4:39823210-39823229 Msa0327860:intron 35.0%
TACAGAAACACGGAAGTAAA+TGG - chr2_4:39823419-39823438 None:intergenic 35.0%
! TTTACTTCCGTGTTTCTGTA+TGG + chr2_4:39823419-39823438 Msa0327860:CDS 35.0%
TGGCAAAGAGTTTGATATCA+AGG + chr2_4:39823439-39823458 Msa0327860:CDS 35.0%
! ATACAGAAGAGTGTGAAGAA+GGG - chr2_4:39823487-39823506 None:intergenic 35.0%
GGCATAGATGAAATGAAAGT+AGG - chr2_4:39823536-39823555 None:intergenic 35.0%
GTGAAACAACACTATTCAAG+TGG - chr2_4:39823557-39823576 None:intergenic 35.0%
CCAAATTATCTTACCTCTCA+AGG - chr2_4:39823649-39823668 None:intergenic 35.0%
CCTTGAGAGGTAAGATAATT+TGG + chr2_4:39823646-39823665 Msa0327860:intron 35.0%
ACAACTGCAAGACCAAAAAT+GGG - chr2_4:39823795-39823814 None:intergenic 35.0%
TCTGATTATGTATGATGCTC+AGG + chr2_4:39823824-39823843 Msa0327860:CDS 35.0%
TTGACATAGTCTAAGTACAG+TGG - chr2_4:39823942-39823961 None:intergenic 35.0%
AGCAAAGATACTCGATATCT+TGG - chr2_4:39824007-39824026 None:intergenic 35.0%
GGAATTCATACCAATTACCA+TGG + chr2_4:39824061-39824080 Msa0327860:intron 35.0%
!!! CTGTCATTTTCTTTTCTCCT+TGG - chr2_4:39824237-39824256 None:intergenic 35.0%
TTATGTAACTCGGTAGTTAC+TGG - chr2_4:39824426-39824445 None:intergenic 35.0%
! ATCATATCCGACACTTCTTT+TGG + chr2_4:39824450-39824469 Msa0327860:intron 35.0%
! TCTTTTGGTCTCCTTTCTAT+AGG + chr2_4:39824465-39824484 Msa0327860:intron 35.0%
TACAGTTGTAGCCTATAGAA+AGG - chr2_4:39824479-39824498 None:intergenic 35.0%
! TACGATAGGTTGAAATGACA+AGG - chr2_4:39824506-39824525 None:intergenic 35.0%
!! AGAAAATAGTGGATGTCACT+TGG + chr2_4:39824551-39824570 Msa0327860:intron 35.0%
!! GAAAATAGTGGATGTCACTT+GGG + chr2_4:39824552-39824571 Msa0327860:intron 35.0%
!! AAAATAGTGGATGTCACTTG+GGG + chr2_4:39824553-39824572 Msa0327860:intron 35.0%
TTAATTCAGGTGCCAAATGA+TGG + chr2_4:39824688-39824707 Msa0327860:intron 35.0%
ACTTTCTTAATCTGAGGACT+CGG - chr2_4:39824723-39824742 None:intergenic 35.0%
GCCATATCCTTTATACTTAG+AGG + chr2_4:39824893-39824912 Msa0327860:intron 35.0%
GTCATAGTGAGGATAATTAC+AGG - chr2_4:39825060-39825079 None:intergenic 35.0%
! GACAATGTTTTGTCATAGTG+AGG - chr2_4:39825071-39825090 None:intergenic 35.0%
TCATAAGTACTTATGTCGGT+AGG - chr2_4:39825194-39825213 None:intergenic 35.0%
GACATAAGTACTTATGAGAC+TGG + chr2_4:39825197-39825216 Msa0327860:intron 35.0%
!!! AGAATGGAAGTATTTTGCCA+TGG - chr2_4:39825453-39825472 None:intergenic 35.0%
ATCGTAAGATCCGACTAATA+GGG - chr2_4:39825764-39825783 None:intergenic 35.0%
!!! ATGTTTTAAAAATCGGGAGG+TGG - chr2_4:39825820-39825839 None:intergenic 35.0%
ATCACTGAATATGACCTGTT+TGG + chr2_4:39825944-39825963 Msa0327860:intron 35.0%
GTCTTAATTGTAAGCCAAAC+AGG - chr2_4:39825961-39825980 None:intergenic 35.0%
! TGTGATTTCTGTGATTTGCA+GGG + chr2_4:39825981-39826000 Msa0327860:intron 35.0%
CAACAAACTACTTCTCCAAA+TGG + chr2_4:39826040-39826059 Msa0327860:CDS 35.0%
GTAAATGGTTGACATCCATT+TGG - chr2_4:39826058-39826077 None:intergenic 35.0%
! CTTTCTTGAGTTTCTGCTTT+TGG - chr2_4:39826134-39826153 None:intergenic 35.0%
CAAAAGCAGAAACTCAAGAA+AGG + chr2_4:39826132-39826151 Msa0327860:CDS 35.0%
AGTGCTTTCTTGGAACAAAA+GGG - chr2_4:39826159-39826178 None:intergenic 35.0%
AAGTGCTTTCTTGGAACAAA+AGG - chr2_4:39826160-39826179 None:intergenic 35.0%
!! ACATTTGCATTAGCTTGTTG+TGG - chr2_4:39826191-39826210 None:intergenic 35.0%
! TGCATCTTCTAAGAAATCAG+AGG - chr2_4:39826264-39826283 None:intergenic 35.0%
CTGCCATTAAAAGAAACTGT+TGG + chr2_4:39826317-39826336 Msa0327860:CDS 35.0%
! TGGTGGTTTACTTGGATTTT+TGG + chr2_4:39826364-39826383 Msa0327860:CDS 35.0%
!!! GGTTTACTTGGATTTTTGGT+TGG + chr2_4:39826368-39826387 Msa0327860:CDS 35.0%
AAGTCAAGTCAGTAATAGCT+AGG + chr2_4:39826497-39826516 Msa0327860:three_prime_UTR 35.0%
TTGAACTGCGCAAGCAAAAT+AGG + chr2_4:39822403-39822422 Msa0327860:five_prime_UTR 40.0%
GGAAATTGAGAGGAAGGAAT+GGG - chr2_4:39822543-39822562 None:intergenic 40.0%
TTTGAGTGAGGGAAATTGAG+AGG - chr2_4:39822553-39822572 None:intergenic 40.0%
! TCCTTTCAGTTTTCGCAGAA+AGG + chr2_4:39822605-39822624 Msa0327860:CDS 40.0%
TCCTTTCTGCGAAAACTGAA+AGG - chr2_4:39822609-39822628 None:intergenic 40.0%
! ACGCCTTTGATCAAAAGTGT+CGG - chr2_4:39822836-39822855 None:intergenic 40.0%
!! ACACTTTTGATCAAAGGCGT+GGG + chr2_4:39822836-39822855 Msa0327860:intron 40.0%
ACAGACACATAACACAACAC+GGG - chr2_4:39822955-39822974 None:intergenic 40.0%
CACAGACACATAACACAACA+CGG - chr2_4:39822956-39822975 None:intergenic 40.0%
AGGTCATATCCTATGAAGCA+CGG - chr2_4:39822980-39822999 None:intergenic 40.0%
!! GAGTTTTGTAGGATCGAACT+AGG + chr2_4:39823037-39823056 Msa0327860:intron 40.0%
!!! GGCTACTTTTACACACTATC+GGG + chr2_4:39823108-39823127 Msa0327860:intron 40.0%
CTGGAGTTTCAATGGCAATT+GGG + chr2_4:39823381-39823400 Msa0327860:CDS 40.0%
AAACACGGAAGTAAATGGCT+TGG - chr2_4:39823414-39823433 None:intergenic 40.0%
CTCTTTGCCATACAGAAACA+CGG - chr2_4:39823429-39823448 None:intergenic 40.0%
ATCAAGGCTCTTATTCAAGC+TGG + chr2_4:39823455-39823474 Msa0327860:CDS 40.0%
! CATACAGAAGAGTGTGAAGA+AGG - chr2_4:39823488-39823507 None:intergenic 40.0%
! TTCTTTTGGATAGGCAACAG+TGG + chr2_4:39823604-39823623 Msa0327860:intron 40.0%
! CCAAAAGAGTGCAGAGAAAA+AGG - chr2_4:39823692-39823711 None:intergenic 40.0%
! CCTTTTTCTCTGCACTCTTT+TGG + chr2_4:39823689-39823708 Msa0327860:intron 40.0%
CACAACTGCAAGACCAAAAA+TGG - chr2_4:39823796-39823815 None:intergenic 40.0%
GAATCCGAGCATGGTTAAAA+GGG - chr2_4:39823920-39823939 None:intergenic 40.0%
!! TGTTTCTGGAACTGTGAATG+TGG + chr2_4:39824175-39824194 Msa0327860:intron 40.0%
!! GTTTCTGGAACTGTGAATGT+GGG + chr2_4:39824176-39824195 Msa0327860:intron 40.0%
!! CTTGGTTTTTGTCACATGTC+CGG - chr2_4:39824219-39824238 None:intergenic 40.0%
CTCTGTTTGACCAATGAACA+TGG - chr2_4:39824288-39824307 None:intergenic 40.0%
! AAGGAGACCAAAAGAAGTGT+CGG - chr2_4:39824460-39824479 None:intergenic 40.0%
ATGTAGACGACGCTAACTAA+TGG + chr2_4:39824636-39824655 Msa0327860:intron 40.0%
CGGTCTATCTTTCCATCATT+TGG - chr2_4:39824703-39824722 None:intergenic 40.0%
!! GTTGTTTCGGGCTTTTCAAT+AGG - chr2_4:39824847-39824866 None:intergenic 40.0%
! TATACCGTAAGGGTTGTTTC+GGG - chr2_4:39824859-39824878 None:intergenic 40.0%
CTATACCGTAAGGGTTGTTT+CGG - chr2_4:39824860-39824879 None:intergenic 40.0%
TTTGCCATGGACAGTATGTA+TGG - chr2_4:39825440-39825459 None:intergenic 40.0%
AGTAACTCATACAGCAACAG+TGG - chr2_4:39825577-39825596 None:intergenic 40.0%
TGTCTGCACTTATGACGTTA+TGG + chr2_4:39825651-39825670 Msa0327860:intron 40.0%
GATCGTAAGATCCGACTAAT+AGG - chr2_4:39825765-39825784 None:intergenic 40.0%
! CTGTGATTTCTGTGATTTGC+AGG + chr2_4:39825980-39825999 Msa0327860:intron 40.0%
AGGGTGTAAGAAGAGAAGTA+GGG + chr2_4:39826000-39826019 Msa0327860:intron 40.0%
!! AGTTTCTGCTTTTGGTGGAT+TGG - chr2_4:39826126-39826145 None:intergenic 40.0%
!! TCTTGAGTTTCTGCTTTTGG+TGG - chr2_4:39826131-39826150 None:intergenic 40.0%
!! GTTCCAAGAAAGCACTTCTT+TGG + chr2_4:39826163-39826182 Msa0327860:CDS 40.0%
!! GTTCCAAAGAAGTGCTTTCT+TGG - chr2_4:39826169-39826188 None:intergenic 40.0%
CAAAATAAGCCAATGTGACG+AGG + chr2_4:39826229-39826248 Msa0327860:CDS 40.0%
ACCTCAAAGTTAGTTGCTGA+TGG + chr2_4:39826290-39826309 Msa0327860:CDS 40.0%
ACCATCAGCAACTAACTTTG+AGG - chr2_4:39826294-39826313 None:intergenic 40.0%
AGAAACTGTTGGTCATACTG+AGG + chr2_4:39826328-39826347 Msa0327860:CDS 40.0%
GGGAAATTGAGAGGAAGGAA+TGG - chr2_4:39822544-39822563 None:intergenic 45.0%
AGTGAGGGAAATTGAGAGGA+AGG - chr2_4:39822549-39822568 None:intergenic 45.0%
ATTTCTTCTCTTGCTGCTGC+TGG + chr2_4:39822648-39822667 Msa0327860:CDS 45.0%
GTGCGTTGTGCTCATCTAAT+AGG - chr2_4:39822814-39822833 None:intergenic 45.0%
!! GCACCGACACTTTTGATCAA+AGG + chr2_4:39822830-39822849 Msa0327860:intron 45.0%
! GACACTTTTGATCAAAGGCG+TGG + chr2_4:39822835-39822854 Msa0327860:intron 45.0%
! GTTATGTGTCGGTCGGATAA+TGG - chr2_4:39822870-39822889 None:intergenic 45.0%
ACACGCCATATGTTTAGTCG+TGG + chr2_4:39823142-39823161 Msa0327860:intron 45.0%
CACGCCATATGTTTAGTCGT+GGG + chr2_4:39823143-39823162 Msa0327860:intron 45.0%
ACGCCATATGTTTAGTCGTG+GGG + chr2_4:39823144-39823163 Msa0327860:intron 45.0%
ATCTCATCCAATGTGGACTC+TGG - chr2_4:39823184-39823203 None:intergenic 45.0%
GATTGCAGCTGGAGTTTCAA+TGG + chr2_4:39823373-39823392 Msa0327860:CDS 45.0%
GCTGGAGTTTCAATGGCAAT+TGG + chr2_4:39823380-39823399 Msa0327860:CDS 45.0%
AAGGCTCTTATTCAAGCTGG+AGG + chr2_4:39823458-39823477 Msa0327860:CDS 45.0%
AGGCTCTTATTCAAGCTGGA+GGG + chr2_4:39823459-39823478 Msa0327860:CDS 45.0%
! GTGGCTTGTGCAACATTACT+TGG + chr2_4:39823623-39823642 Msa0327860:CDS 45.0%
!! CAACATTACTTGGCCTTGAG+AGG + chr2_4:39823633-39823652 Msa0327860:CDS 45.0%
GACCAAAAATGGGATCTGAG+AGG - chr2_4:39823785-39823804 None:intergenic 45.0%
! TGTGCCCTTTTAACCATGCT+CGG + chr2_4:39823913-39823932 Msa0327860:intron 45.0%
GGAATCCGAGCATGGTTAAA+AGG - chr2_4:39823921-39823940 None:intergenic 45.0%
GCGTGTGTGTGTGTATGAAA+TGG + chr2_4:39824150-39824169 Msa0327860:intron 45.0%
CGGACATGTGACAAAAACCA+AGG + chr2_4:39824217-39824236 Msa0327860:intron 45.0%
GGTCACTGTAGGTTAAACCA+TGG - chr2_4:39824267-39824286 None:intergenic 45.0%
CCAATGAACATGGTCACTGT+AGG - chr2_4:39824278-39824297 None:intergenic 45.0%
CCTACAGTGACCATGTTCAT+TGG + chr2_4:39824275-39824294 Msa0327860:intron 45.0%
! TCACTTGGGGTTTTGCATGT+GGG + chr2_4:39824566-39824585 Msa0327860:intron 45.0%
GCAGATGCATATCTATCTGC+AGG - chr2_4:39824780-39824799 None:intergenic 45.0%
AAAGCCCGAAACAACCCTTA+CGG + chr2_4:39824852-39824871 Msa0327860:intron 45.0%
TGGACAGTATGTATGGCTCA+AGG - chr2_4:39825433-39825452 None:intergenic 45.0%
TGAGCCATACATACTGTCCA+TGG + chr2_4:39825433-39825452 Msa0327860:intron 45.0%
GTAACTCGAGGATCATAGCA+TGG - chr2_4:39825787-39825806 None:intergenic 45.0%
GGTTGAAAGATCGTAACTCG+AGG - chr2_4:39825799-39825818 None:intergenic 45.0%
AGTATAACTGAGGCCCTGTT+TGG - chr2_4:39825869-39825888 None:intergenic 45.0%
CAGGGTGTAAGAAGAGAAGT+AGG + chr2_4:39825999-39826018 Msa0327860:intron 45.0%
GAGAAGTAGGGATTCATGCT+AGG + chr2_4:39826012-39826031 Msa0327860:CDS 45.0%
GGTCTGATAAACTCTCAACC+TGG + chr2_4:39826095-39826114 Msa0327860:CDS 45.0%
!! TTTGGTGGATTGGATGATCC+AGG - chr2_4:39826116-39826135 None:intergenic 45.0%
ATTGTAGCTCCTCGTCACAT+TGG - chr2_4:39826241-39826260 None:intergenic 45.0%
ACTGAGGTTGAAGTTGTAGC+TGG + chr2_4:39826344-39826363 Msa0327860:CDS 45.0%
GTTGTAGCTGGTGGTTTACT+TGG + chr2_4:39826356-39826375 Msa0327860:CDS 45.0%
!!! ACTTGGATTTTTGGTTGGGC+TGG + chr2_4:39826373-39826392 Msa0327860:CDS 45.0%
!! ACAATAATATTATTAAAATT+TGG - chr2_4:39823287-39823306 None:intergenic 5.0%
TGTCTGTGTCCGTGCTTCAT+AGG + chr2_4:39822968-39822987 Msa0327860:intron 50.0%
ACGCCCCACGACTAAACATA+TGG - chr2_4:39823150-39823169 None:intergenic 50.0%
AGTGTGTCCAGAGTCCACAT+TGG + chr2_4:39823174-39823193 Msa0327860:intron 50.0%
! GCTTAGGTTCTGATTGCAGC+TGG + chr2_4:39823362-39823381 Msa0327860:intron 50.0%
ATCTGAGAGGCCTCTGCATT+TGG - chr2_4:39823772-39823791 None:intergenic 50.0%
! GGCCTCTCAGATCCCATTTT+TGG + chr2_4:39823780-39823799 Msa0327860:CDS 50.0%
GGTCTTGCAGTTGTGTATGC+TGG + chr2_4:39823801-39823820 Msa0327860:CDS 50.0%
AGTACAGTGGAATCCGAGCA+TGG - chr2_4:39823929-39823948 None:intergenic 50.0%
ACACACACACGCGCACAAAA+AGG - chr2_4:39824142-39824161 None:intergenic 50.0%
! GTCACTTGGGGTTTTGCATG+TGG + chr2_4:39824565-39824584 Msa0327860:intron 50.0%
! GTGGCAGTCTCTGGAAACAA+AGG - chr2_4:39825541-39825560 None:intergenic 50.0%
TTGTTTCCAGAGACTGCCAC+TGG + chr2_4:39825541-39825560 Msa0327860:intron 50.0%
TGTTTCCAGAGACTGCCACT+GGG + chr2_4:39825542-39825561 Msa0327860:intron 50.0%
GAGGTTGAAGTTGTAGCTGG+TGG + chr2_4:39826347-39826366 Msa0327860:CDS 50.0%
CAGTGGTTAAACACGCCCAG+TGG - chr2_4:39825560-39825579 None:intergenic 55.0%
! TCGGTCGGATAATGGCCACG+CGG - chr2_4:39822862-39822881 None:intergenic 60.0%
ACACGCCCAGTGGCAGTCTC+TGG - chr2_4:39825550-39825569 None:intergenic 65.0%
! GATCAAAGGCGTGGGCCGCG+TGG + chr2_4:39822844-39822863 Msa0327860:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 39822389 39826627 39822389 ID=Msa0327860;Name=Msa0327860
chr2_4 mRNA 39822389 39826627 39822389 ID=Msa0327860-mRNA-1;Parent=Msa0327860;Name=Msa0327860-mRNA-1;_AED=0.06;_eAED=0.06;_QI=121|1|1|1|1|1|5|212|283
chr2_4 exon 39822389 39822707 39822389 ID=Msa0327860-mRNA-1:exon:12047;Parent=Msa0327860-mRNA-1
chr2_4 exon 39823368 39823502 39823368 ID=Msa0327860-mRNA-1:exon:12048;Parent=Msa0327860-mRNA-1
chr2_4 exon 39823617 39823654 39823617 ID=Msa0327860-mRNA-1:exon:12049;Parent=Msa0327860-mRNA-1
chr2_4 exon 39823779 39823845 39823779 ID=Msa0327860-mRNA-1:exon:12050;Parent=Msa0327860-mRNA-1
chr2_4 exon 39826002 39826627 39826002 ID=Msa0327860-mRNA-1:exon:12051;Parent=Msa0327860-mRNA-1
chr2_4 five_prime_UTR 39822389 39822509 39822389 ID=Msa0327860-mRNA-1:five_prime_utr;Parent=Msa0327860-mRNA-1
chr2_4 CDS 39822510 39822707 39822510 ID=Msa0327860-mRNA-1:cds;Parent=Msa0327860-mRNA-1
chr2_4 CDS 39823368 39823502 39823368 ID=Msa0327860-mRNA-1:cds;Parent=Msa0327860-mRNA-1
chr2_4 CDS 39823617 39823654 39823617 ID=Msa0327860-mRNA-1:cds;Parent=Msa0327860-mRNA-1
chr2_4 CDS 39823779 39823845 39823779 ID=Msa0327860-mRNA-1:cds;Parent=Msa0327860-mRNA-1
chr2_4 CDS 39826002 39826415 39826002 ID=Msa0327860-mRNA-1:cds;Parent=Msa0327860-mRNA-1
chr2_4 three_prime_UTR 39826416 39826627 39826416 ID=Msa0327860-mRNA-1:three_prime_utr;Parent=Msa0327860-mRNA-1
Gene Sequence

>Msa0327860

ATGATGTTGCTGCAACAATCAAATTTCTGTCCCATTCCTTCCTCTCAATTTCCCTCACTCAAACAAAGAAATCCATTTCTTCATCATCAACAATTTCCTTTCAGTTTTCGCAGAAAGGAGAAAGCTTCTACCTTTAGAATTTCTTCTCTTGCTGCTGCTGGTTTTTTCAATGATGTCGCTCAAATTGCTCATAATAAGGTTCTGATTGCAGCTGGAGTTTCAATGGCAATTGGGCAACTTTCCAAGCCATTTACTTCCGTGTTTCTGTATGGCAAAGAGTTTGATATCAAGGCTCTTATTCAAGCTGGAGGGTTCCCTTCTTCACACTCTTCTGCAACAGTGGCTTGTGCAACATTACTTGGCCTTGAGAGAGGCCTCTCAGATCCCATTTTTGGTCTTGCAGTTGTGTATGCTGGTCTGATTATGTATGATGCTCAGGGTGTAAGAAGAGAAGTAGGGATTCATGCTAGGACAATCAACAAACTACTTCTCCAAATGGATGTCAACCATTTACATTCCAAACATAAAGTTGGTCTGATAAACTCTCAACCTGGATCATCCAATCCACCAAAAGCAGAAACTCAAGAAAGGTCCCTTTTGTTCCAAGAAAGCACTTCTTTGGAACCACAACAAGCTAATGCAAATGTATTAGTTAAATCAGGAAGCAAAATAAGCCAATGTGACGAGGAGCTACAATCCTCTGATTTCTTAGAAGATGCAAAAGAAACCTCAAAGTTAGTTGCTGATGGTCTACTGCCATTAAAAGAAACTGTTGGTCATACTGAGGTTGAAGTTGTAGCTGGTGGTTTACTTGGATTTTTGGTTGGGCTGGCTGTGTATAATTTGAAGTAA

Protein sequence

>Msa0327860

MMLLQQSNFCPIPSSQFPSLKQRNPFLHHQQFPFSFRRKEKASTFRISSLAAAGFFNDVAQIAHNKVLIAAGVSMAIGQLSKPFTSVFLYGKEFDIKALIQAGGFPSSHSSATVACATLLGLERGLSDPIFGLAVVYAGLIMYDAQGVRREVGIHARTINKLLLQMDVNHLHSKHKVGLINSQPGSSNPPKAETQERSLLFQESTSLEPQQANANVLVKSGSKISQCDEELQSSDFLEDAKETSKLVADGLLPLKETVGHTEVEVVAGGLLGFLVGLAVYNLK*