AlfalfaGEDB | Msa0347130

M. sativa cultivar zhongmu-4 / Msa0347130

KEGG: -
GO: -
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0347130	XP_039687735.1	95.358	797	37	0	1	797	28	824	0.0	1541

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0347130	sp\|Q9SW11\|PUB35_ARATH	52.869	819	348	10	13	797	19	833	0.0	827

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0347130	G7IVL9	95.358	797	37	0	1	797	1	797	0.0	1540

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006700	Msa0347130	0.823824	1.125055e-53	-8.615850e-47
Msa0012780	Msa0347130	-0.800372	1.486449e-48	-8.615850e-47
Msa0020630	Msa0347130	0.812689	3.736317e-51	-8.615850e-47
Msa0028950	Msa0347130	0.804089	2.553418e-49	-8.615850e-47
Msa0033050	Msa0347130	0.816257	6.068959e-52	-8.615850e-47
Msa0036580	Msa0347130	-0.803309	3.706373e-49	-8.615850e-47
Msa0037820	Msa0347130	0.801129	1.041477e-48	-8.615850e-47
Msa0042390	Msa0347130	0.808601	2.858865e-50	-8.615850e-47
Msa0053960	Msa0347130	0.812722	3.675017e-51	-8.615850e-47
Msa0055280	Msa0347130	0.802971	4.355552e-49	-8.615850e-47

Showing 1 to 10 of 272 entries

Previous1 2 3 4 5…28Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0347130	MtrunA17_Chr3g0079031	95.358	797	37	0	1	797	1	797	0.0	1540
Msa0347130	MtrunA17_Chr3g0079051	79.950	803	155	2	1	797	4	806	0.0	1295
Msa0347130	MtrunA17_Chr4g0070941	37.500	792	445	12	16	797	7	758	1.04e-174	521
Msa0347130	MtrunA17_Chr8g0389011	35.061	733	441	13	15	716	44	772	7.31e-143	441
Msa0347130	MtrunA17_Chr3g0139121	36.277	736	429	12	11	716	30	755	1.21e-141	437
Msa0347130	MtrunA17_Chr1g0147731	36.756	672	386	6	80	719	13	677	5.03e-140	430
Msa0347130	MtrunA17_Chr6g0488761	35.705	773	425	20	1	716	1	758	9.54e-140	432
Msa0347130	MtrunA17_Chr2g0334261	35.271	774	449	17	15	752	17	774	3.60e-129	404
Msa0347130	MtrunA17_Chr7g0247831	33.489	854	483	22	15	795	51	892	1.84e-126	400
Msa0347130	MtrunA17_Chr3g0135921	38.576	604	327	10	124	711	21	596	9.24e-126	390

Showing 1 to 10 of 505 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0347130	AT4G25160.1	52.869	819	348	10	13	797	19	833	827
Msa0347130	AT5G61550.3	49.636	824	368	10	16	797	24	842	778
Msa0347130	AT5G61550.1	49.636	824	368	10	16	797	24	842	778
Msa0347130	AT5G61550.4	49.636	824	368	10	16	797	24	842	778
Msa0347130	AT5G61550.2	49.636	824	368	10	16	797	24	842	777
Msa0347130	AT5G61560.4	46.303	825	362	15	15	797	26	811	708
Msa0347130	AT5G61560.5	46.303	825	362	15	15	797	7	792	708
Msa0347130	AT5G61560.3	46.303	825	362	15	15	797	26	811	708
Msa0347130	AT5G61560.1	46.303	825	362	15	15	797	7	792	708
Msa0347130	AT5G61560.2	46.398	819	368	14	15	797	7	790	703

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 171 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCACTTCTTTGATACTC+AGG	0.497697	3_1:-8051565	None:intergenic
AAACGATTATACAGTAGTTT+TGG	0.326624	3_1:-8046394	None:intergenic
AAACTTGAGGATGCTCTGAG+TGG	0.678378	3_1:+8050764	Msa0347130:CDS
AAAGCAAATATGTTGTACAA+TGG	0.543542	3_1:+8047425	Msa0347130:CDS
AAATCAGATGTTTACGCATT+TGG	0.260326	3_1:+8051598	Msa0347130:CDS
AAATCTTCAATAATATGATA+AGG	0.480148	3_1:-8052613	None:intergenic
AACCTATCAAACCATGGGAT+TGG	0.447811	3_1:-8051325	None:intergenic
AACTATATGAGTAAGTGCTA+TGG	0.576174	3_1:-8051656	None:intergenic
AACTCCTTTCAGTAAACATA+AGG	0.416367	3_1:+8048590	Msa0347130:intron
AAGAAACACTAGACATAGCT+CGG	0.578993	3_1:+8051746	Msa0347130:CDS

Showing 1 to 10 of 171 entries

Previous1 2 3 4 5…18Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTGAGAACAAAAGTGATGAT+GGG	+	chr3_1:8046509-8046528	Msa0347130:five_prime_UTR	30.0%
ACAAAAAGTTCAAAGCAAGT+TGG	+	chr3_1:8046575-8046594	Msa0347130:five_prime_UTR	30.0%
GTAATTCAAAGCTGTTTGAT+TGG	+	chr3_1:8046716-8046735	Msa0347130:intron	30.0%
AATTTGAACTAGATGAACAC+AGG	-	chr3_1:8046852-8046871	None:intergenic	30.0%
GAAAATCGTCAAGGTTAAAA+TGG	-	chr3_1:8046876-8046895	None:intergenic	30.0%
TACTCCAAAATCTTCATTTC+CGG	+	chr3_1:8047009-8047028	Msa0347130:intron	30.0%
GTTATTGTCATGTGTATAAG+CGG	+	chr3_1:8047149-8047168	Msa0347130:intron	30.0%
CATCTTCTGGTATATTTAGA+AGG	+	chr3_1:8047960-8047979	Msa0347130:CDS	30.0%
ATTGATCTATCTACATGGTA+AGG	-	chr3_1:8048045-8048064	None:intergenic	30.0%
AATATCGAAACATACCCTTA+AGG	+	chr3_1:8048287-8048306	Msa0347130:intron	30.0%

Showing 1 to 10 of 373 entries

Previous1 2 3 4 5…38Next

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	8046337	8052741	8046337	ID=Msa0347130;Name=Msa0347130
chr3_1	mRNA	8046337	8052741	8046337	ID=Msa0347130-mRNA-1;Parent=Msa0347130;Name=Msa0347130-mRNA-1;_AED=0.30;_eAED=0.30;_QI=305\|1\|1\|1\|0.88\|0.8\|10\|344\|797
chr3_1	exon	8046337	8046605	8046337	ID=Msa0347130-mRNA-1:exon:2284;Parent=Msa0347130-mRNA-1
chr3_1	exon	8047316	8047532	8047316	ID=Msa0347130-mRNA-1:exon:2285;Parent=Msa0347130-mRNA-1
chr3_1	exon	8047651	8047772	8047651	ID=Msa0347130-mRNA-1:exon:2286;Parent=Msa0347130-mRNA-1
chr3_1	exon	8047860	8047981	8047860	ID=Msa0347130-mRNA-1:exon:2287;Parent=Msa0347130-mRNA-1
chr3_1	exon	8048602	8048792	8048602	ID=Msa0347130-mRNA-1:exon:2288;Parent=Msa0347130-mRNA-1
chr3_1	exon	8049360	8049679	8049360	ID=Msa0347130-mRNA-1:exon:2289;Parent=Msa0347130-mRNA-1
chr3_1	exon	8050066	8050167	8050066	ID=Msa0347130-mRNA-1:exon:2290;Parent=Msa0347130-mRNA-1
chr3_1	exon	8050548	8050976	8050548	ID=Msa0347130-mRNA-1:exon:2291;Parent=Msa0347130-mRNA-1
chr3_1	exon	8051187	8051939	8051187	ID=Msa0347130-mRNA-1:exon:2292;Parent=Msa0347130-mRNA-1
chr3_1	exon	8052224	8052741	8052224	ID=Msa0347130-mRNA-1:exon:2293;Parent=Msa0347130-mRNA-1
chr3_1	five_prime_UTR	8046337	8046605	8046337	ID=Msa0347130-mRNA-1:five_prime_utr;Parent=Msa0347130-mRNA-1
chr3_1	five_prime_UTR	8047316	8047351	8047316	ID=Msa0347130-mRNA-1:five_prime_utr;Parent=Msa0347130-mRNA-1
chr3_1	CDS	8047352	8047532	8047352	ID=Msa0347130-mRNA-1:cds;Parent=Msa0347130-mRNA-1
chr3_1	CDS	8047651	8047772	8047651	ID=Msa0347130-mRNA-1:cds;Parent=Msa0347130-mRNA-1
chr3_1	CDS	8047860	8047981	8047860	ID=Msa0347130-mRNA-1:cds;Parent=Msa0347130-mRNA-1
chr3_1	CDS	8048602	8048792	8048602	ID=Msa0347130-mRNA-1:cds;Parent=Msa0347130-mRNA-1
chr3_1	CDS	8049360	8049679	8049360	ID=Msa0347130-mRNA-1:cds;Parent=Msa0347130-mRNA-1
chr3_1	CDS	8050066	8050167	8050066	ID=Msa0347130-mRNA-1:cds;Parent=Msa0347130-mRNA-1
chr3_1	CDS	8050548	8050976	8050548	ID=Msa0347130-mRNA-1:cds;Parent=Msa0347130-mRNA-1
chr3_1	CDS	8051187	8051939	8051187	ID=Msa0347130-mRNA-1:cds;Parent=Msa0347130-mRNA-1
chr3_1	CDS	8052224	8052397	8052224	ID=Msa0347130-mRNA-1:cds;Parent=Msa0347130-mRNA-1
chr3_1	three_prime_UTR	8052398	8052741	8052398	ID=Msa0347130-mRNA-1:three_prime_utr;Parent=Msa0347130-mRNA-1

Gene Sequence

>Msa0347130

ATGGATAGGATTCAAGAGGCAGATGACAATAATAAATCATCAGTAGTTGGTCTAGCAATCAAGGGTAACAAGAAAAGCAAATATGTTGTACAATGGGCACTTGATAAATTTGTTCATGAAGGGATAAGTATCTTCAAGCTTATACATGTCAGGGCTGTTATAACAGGAGTTCCAACACCAATGGGAGATGTGCTTCCTCTTTCACAGGTACGCAATGACGTAGCAGCTTCTTTTAAAAGAGAAGTGGAGTGGCAAACAAATCAAATGCTTCTACCATTTAAGAGTTTGTGTGAGCAAAGAAAGGTGCATGTAGATGTTGTAGTGATTGAATCTGATGATGTAGCAACTGCAGTAGCAGAGGAAGTAGCAAGGGATGCTATTACCAAACTTGTCCTTGGAGCTTCATCTTCTGGTATATTTAGAAGTAAACATAAGGGTATTTCTGCAAAAATATCGGTATGCACTCCAAGATTTTGTACTGTTTATGCCGTTGCCAAAGGAAAATTGTCCATACGGCCGTCAGACATGGAGATTGATGGAAGCATTATAGATAATACTAGTGAAGCCAGTTTTTCCTCCAGCAGCTCATCAAACTACACTTCCACCTCTCAGACAGATCCTGCCTCAGTTGCATCATATAATGCTTTACATTCCAATGCCAAGGAAACACGACGAGTTAAAGCTCACTCGAGTATAGATCAGACCCTTCTAAGCACAAGTCCTAGTCTAAATGAAACTAATCATTATAGAGGTCAGTCCCTTGATCTTGGAAGAAAGAAGGCTGCTGCAAGTTCTTCCAGAAACTCAGATATCGACCATGCTCTAAGTCAGGCCTCTAGTTTCAGAAGCATTTCAGATACTGAATCTATCTTTTATGAACAAAATTATGCCAAGGATGCGACACGAGTTAACAGACTTCCACCATCAAATAGGCAGGAAAACATTAACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGACATGCGCAAGGAATGCATGCAGTAGCTCAAAGTGAGAACATCGATGCATCGCAAAAGTTGAATGAACTAAACAAGAGAAGATTAGAAGAATCCACGAAAATGAAGGAGATTATGGCTAAGGAGGAGATGGCCATTGAATTAGCGAATCAAGAAAGAGAGAAATATGAAGCTGTAGCAAGAGAAGCTACATATTTGAAAGAATGTGCTGAAAGAGAAGCTGCAGAACGAAAAGAAACAGAATTTAAAGCTATCCGTGCTGCCAAAGAGAAAGAAAAACTTGAGGATGCTCTGAGTGGTTCCACACCTCAGTACCGAATTTTTACGTGGGATGAAATAGTTTCAGCTACTTCATCTTTCTCTGAAGATCTGAGAATTGGAATGGGTGCATATGGAATTGTGTATAAGTGCACTTTGCATCACACAACTGTTGCTGTTAAAGTTCTCCATTCTACTGGAAACCGCAAAAGCAAGCAATTCCAACAAGAGTTAGAGATATTGAGCAGAATTCATCATCCAAACTTGCTTCTTCTTCTTGGTGCATGTCCTGATCATGGATGCCTTGTGTATGAATACATGGAAAATGGTAACTTGGAGGATAGATTACTCCAGAAAAACAGTAATAGCCCAATCCCATGGTTTGATAGGTTTCGAATAGCTTGGGAAGTTGCGTCAGCTCTTTCCTTTCTTCACAGCACAAAGCCACAACCAATCATCCATCGTGACTTGAAACCCGCAAACATCTTGCTTGATGGTAACCTTGTCAGCAAGATTGGTGATGTTGGCCTTTCTACAATCCTTGATTCAGATGAATTATCTGCCATGTATAAGGACACTGCACCTGTTGGAACACTCAGCTACATTGATCCTGAGTATCAAAGAAGTGGTTTAATATCTACGAAATCAGATGTTTACGCATTTGGATTAGTGATCTTACAGTTATTGACAGCAAAACCAGCCATAGCACTTACTCATATAGTTGAAACAGCTATTGATGGTGGTAATTTAGCAGATATATTGGATCCAAATGCAGGATCATGGCCACTACAAGAAACACTAGACATAGCTCGGTTAGGATTAGGCTGTGCGGAGATGCGACGTAAGGACCGACCTGATTTGAATGACCATGTCCTACCAATGCTAGAGAGGCTGAAAGAAGTTGCTGATAAGGCTCAACATTCTGCTTCAGTAGTTACTATAAAATCCAGACCTCCAAACCATTTTATATGCCCTATACTTCAGGACGTGATGGATGATCCTTGTGTTGCTGCTGACGGATATACATACGATCGTAATGCAATTGAAAAATGGCTTGAGGAGAATGACAAATCACCAATGACAAACATGGCTTTACCTCATAAGCATCTAATTCCTAATTACACACTTCTATCTGCAATTTTGGAGTGGAAGACCTGA

Protein sequence

>Msa0347130

MDRIQEADDNNKSSVVGLAIKGNKKSKYVVQWALDKFVHEGISIFKLIHVRAVITGVPTPMGDVLPLSQVRNDVAASFKREVEWQTNQMLLPFKSLCEQRKVHVDVVVIESDDVATAVAEEVARDAITKLVLGASSSGIFRSKHKGISAKISVCTPRFCTVYAVAKGKLSIRPSDMEIDGSIIDNTSEASFSSSSSSNYTSTSQTDPASVASYNALHSNAKETRRVKAHSSIDQTLLSTSPSLNETNHYRGQSLDLGRKKAAASSSRNSDIDHALSQASSFRSISDTESIFYEQNYAKDATRVNRLPPSNRQENINLELEKLRIELRHAQGMHAVAQSENIDASQKLNELNKRRLEESTKMKEIMAKEEMAIELANQEREKYEAVAREATYLKECAEREAAERKETEFKAIRAAKEKEKLEDALSGSTPQYRIFTWDEIVSATSSFSEDLRIGMGAYGIVYKCTLHHTTVAVKVLHSTGNRKSKQFQQELEILSRIHHPNLLLLLGACPDHGCLVYEYMENGNLEDRLLQKNSNSPIPWFDRFRIAWEVASALSFLHSTKPQPIIHRDLKPANILLDGNLVSKIGDVGLSTILDSDELSAMYKDTAPVGTLSYIDPEYQRSGLISTKSDVYAFGLVILQLLTAKPAIALTHIVETAIDGGNLADILDPNAGSWPLQETLDIARLGLGCAEMRRKDRPDLNDHVLPMLERLKEVADKAQHSASVVTIKSRPPNHFICPILQDVMDDPCVAADGYTYDRNAIEKWLEENDKSPMTNMALPHKHLIPNYTLLSAILEWKT*