AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1310110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1310110 MtrunA17_Chr8g0337231 91.111 315 28 0 1 315 1 315 0.0 576
Msa1310110 MtrunA17_Chr8g0337241 87.500 256 30 1 62 317 27 280 2.80e-165 461
Msa1310110 MtrunA17_Chr6g0457691 42.347 196 104 4 120 314 538 725 3.95e-42 154
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1310110 AT5G17660.1 65.306 245 77 3 76 317 69 308 3.34e-120 348
Msa1310110 AT5G24840.1 28.512 242 128 11 100 314 23 246 5.61e-12 65.1

Find 85 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTATTTATTTGTAATTTA+AGG 0.065136 8_4:+6659557 Msa1310110:three_prime_UTR
ACCTAAAGTGAGAAATTATT+TGG 0.126545 8_4:+6658230 Msa1310110:CDS
CTTGCAGTTAGTTTCAATTT+TGG 0.187587 8_4:+6658613 Msa1310110:CDS
CCCAAATAATTTCTCACTTT+AGG 0.263184 8_4:-6658231 None:intergenic
TCAATCACATCTGTTTCTTT+TGG 0.300643 8_4:-6659346 None:intergenic
GGTCTTGTTCAGCTGTTACT+TGG 0.321900 8_4:-6656189 None:intergenic
TAAGCAACCCTATGGGGATT+AGG 0.326313 8_4:+6659267 Msa1310110:CDS
ATTATTTGGGATTGGAAATA+CGG 0.335361 8_4:+6658244 Msa1310110:CDS
CTGCCACTCATGGTGGATAT+TGG 0.351376 8_4:+6657634 Msa1310110:CDS
TTGAAGAGAAAGAGGGGAAA+TGG 0.354505 8_4:+6655991 Msa1310110:exon
TCACTGTCACACAATATAGA+AGG 0.376117 8_4:-6659233 None:intergenic
ACCAACTGCTTGAAAGAAAT+AGG 0.378434 8_4:-6658572 None:intergenic
CGTCACAAGAAGTTAGTATA+TGG 0.384046 8_4:+6656055 Msa1310110:CDS
AGAAAAGTATGCATTCTCTT+AGG 0.387543 8_4:+6659461 Msa1310110:three_prime_UTR
TTTGTCAAATTTCAGGATAT+GGG 0.389407 8_4:+6656359 Msa1310110:intron
TACAGAGAAAGAAGAACTTA+AGG 0.390216 8_4:-6656411 None:intergenic
AGTGAGAAATTATTTGGGAT+TGG 0.396847 8_4:+6658236 Msa1310110:CDS
GTTGTGACTTATGTTGTTGT+TGG 0.400793 8_4:-6656210 None:intergenic
CCTAAAGTGAGAAATTATTT+GGG 0.400944 8_4:+6658231 Msa1310110:CDS
GTGCATCAACTTCATCAAAC+TGG 0.411217 8_4:-6659187 None:intergenic
GTCTTGTTCAGCTGTTACTT+GGG 0.430566 8_4:-6656188 None:intergenic
TGAAGAGAAAGAGGGGAAAT+GGG 0.430964 8_4:+6655992 Msa1310110:exon
TGGTGAAGCGTGCTGAGTTA+TGG 0.441715 8_4:+6658400 Msa1310110:CDS
ATTGTAGATAATTTATCTCC+TGG 0.443117 8_4:+6658985 Msa1310110:CDS
GAAGAAGAGAAAGGACGAAA+GGG 0.446707 8_4:-6656124 None:intergenic
ACCTATTTCTTTCAAGCAGT+TGG 0.457053 8_4:+6658571 Msa1310110:CDS
GGTGAAGCGTGCTGAGTTAT+GGG 0.461581 8_4:+6658401 Msa1310110:CDS
TCCACCATGAGTGGCAGAGC+AGG 0.463070 8_4:-6657628 None:intergenic
AGCTGTTACTTGGGAAATAG+AGG 0.464400 8_4:-6656179 None:intergenic
TTGTAGATAATTTATCTCCT+GGG 0.470027 8_4:+6658986 Msa1310110:CDS
TTCCAGTCTGGTACTGGTGC+AGG 0.472779 8_4:-6657589 None:intergenic
CCAGTGGGTTGAAGAGAAAG+AGG 0.474783 8_4:+6655983 None:intergenic
ACAGAGAAAGAAGAACTTAA+GGG 0.478265 8_4:-6656410 None:intergenic
GGGATTGGAAATACGGCAAA+GGG 0.483148 8_4:+6658251 Msa1310110:CDS
AGACCCTGCTCTGCCACTCA+TGG 0.484179 8_4:+6657624 Msa1310110:CDS
ACCTGGTTCCAGTCTGGTAC+TGG 0.484249 8_4:-6657595 None:intergenic
ATGGTTATTAAGCAACCCTA+TGG 0.492202 8_4:+6659259 Msa1310110:CDS
CTCTCGGTCCTAATCCCCAT+AGG 0.493796 8_4:-6659275 None:intergenic
TGAGTTATGGGTAAAAGATC+TGG 0.497316 8_4:+6658413 Msa1310110:CDS
AGAAGAAGAGAAAGGACGAA+AGG 0.506184 8_4:-6656125 None:intergenic
GAAACTAACTGCAAGGGTCC+AGG 0.506605 8_4:-6658605 None:intergenic
GCAAACACCTGGTTCCAGTC+TGG 0.508336 8_4:-6657601 None:intergenic
TTCTGCATGAATCTCTCTCT+CGG 0.516639 8_4:-6659291 None:intergenic
GAAATAGAGGAAGAGGAGAG+TGG 0.516991 8_4:-6656166 None:intergenic
TACTTGGGAAATAGAGGAAG+AGG 0.521735 8_4:-6656173 None:intergenic
ATAAAATGTCTGCAATGGAC+AGG 0.522666 8_4:-6659390 None:intergenic
GCAGTGGTAGGTTTCTTATG+TGG 0.523016 8_4:+6658193 Msa1310110:CDS
ACTCAATCTCTCTAACAACT+TGG 0.526628 8_4:+6656270 Msa1310110:CDS
CAGTTGGTAGAATCATATCC+TGG 0.532880 8_4:+6658587 Msa1310110:CDS
TGGTTATTAAGCAACCCTAT+GGG 0.534053 8_4:+6659260 Msa1310110:CDS
TGGGTTATTGCTGTGGAGGT+TGG 0.534304 8_4:+6656011 Msa1310110:CDS
CTCCTGCACCAGTACCAGAC+TGG 0.539916 8_4:+6657587 Msa1310110:CDS
GGTGAAAATGAGAGTGAGAG+TGG 0.548892 8_4:-6656103 None:intergenic
CAAAATTGAAACTAACTGCA+AGG 0.551890 8_4:-6658612 None:intergenic
ATGGGTAAAAGATCTGGCTC+TGG 0.555239 8_4:+6658419 Msa1310110:CDS
ACACTATAAAATGTCTGCAA+TGG 0.555855 8_4:-6659395 None:intergenic
TGTAGATAATTTATCTCCTG+GGG 0.562130 8_4:+6658987 Msa1310110:CDS
CAGTGGGTTGAAGAGAAAGA+GGG 0.573019 8_4:+6655984 None:intergenic
AAATAATGACAGGCAGTGGT+AGG 0.578508 8_4:+6658181 Msa1310110:intron
TGGGATTGGAAATACGGCAA+AGG 0.583272 8_4:+6658250 Msa1310110:CDS
GAGCAGGGTCTGCAAACACC+TGG 0.584261 8_4:-6657612 None:intergenic
GGGGAAATGGGTTATTGCTG+TGG 0.588504 8_4:+6656004 Msa1310110:exon
GAAATGGGTTATTGCTGTGG+AGG 0.594719 8_4:+6656007 Msa1310110:exon
CATTCTCTTAGGATGCCTAC+CGG 0.595714 8_4:+6659472 Msa1310110:three_prime_UTR
CACTGTCACACAATATAGAA+GGG 0.596542 8_4:-6659232 None:intergenic
TCTCGGTCCTAATCCCCATA+GGG 0.597669 8_4:-6659274 None:intergenic
ACCAGTACCAGACTGGAACC+AGG 0.600428 8_4:+6657594 Msa1310110:CDS
ATATGTTCAACATCAACCAC+AGG 0.611589 8_4:+6659438 Msa1310110:three_prime_UTR
CTCATGGTGGATATTGGATG+TGG 0.615858 8_4:+6657640 Msa1310110:CDS
TTCATGCAGAATTCGAAGGA+GGG 0.618770 8_4:+6659303 Msa1310110:CDS
GAGATTCATGCAGAATTCGA+AGG 0.619717 8_4:+6659299 Msa1310110:CDS
AAAATTGAAACTAACTGCAA+GGG 0.620397 8_4:-6658611 None:intergenic
CCCTGCTCTGCCACTCATGG+TGG 0.621197 8_4:+6657627 Msa1310110:CDS
AAGGAGGGAAAATCTATCGA+AGG 0.623652 8_4:+6659318 Msa1310110:CDS
CCACCATGAGTGGCAGAGCA+GGG 0.630245 8_4:-6657627 None:intergenic
ATTCATGCAGAATTCGAAGG+AGG 0.630607 8_4:+6659302 Msa1310110:CDS
GGTTATTAAGCAACCCTATG+GGG 0.641395 8_4:+6659261 Msa1310110:CDS
ACAGTCTGATGTGGTTGAAG+TGG 0.648166 8_4:+6659148 Msa1310110:CDS
CATCCAATATCCACCATGAG+TGG 0.650715 8_4:-6657637 None:intergenic
GGTATTTGTACAGTCTGATG+TGG 0.665592 8_4:+6659139 Msa1310110:intron
TCTACAATAGCACCAACCAA+AGG 0.670279 8_4:-6658970 None:intergenic
TCTATATTGTGTGACAGTGA+AGG 0.673502 8_4:+6659236 Msa1310110:CDS
TATTGTGTGACAGTGAAGGA+TGG 0.681117 8_4:+6659240 Msa1310110:CDS
AGTGGGTTGAAGAGAAAGAG+GGG 0.690372 8_4:+6655985 None:intergenic
GTAGATAATTTATCTCCTGG+GGG 0.693547 8_4:+6658988 Msa1310110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAAAAAATGATATTTTTAT+AGG + chr8_4:6656895-6656914 Msa1310110:intron 10.0%
!!! TAATATTTTCAGTTTAAAGT+GGG - chr8_4:6656323-6656342 None:intergenic 15.0%
!!! ATAATATTTTCAGTTTAAAG+TGG - chr8_4:6656324-6656343 None:intergenic 15.0%
!! AATAAGAATAAACTACTAAA+GGG - chr8_4:6656474-6656493 None:intergenic 15.0%
!! TATAAAACAGTTTAATACAA+TGG + chr8_4:6656524-6656543 Msa1310110:intron 15.0%
!!! TATCATTTTTTTGTTTGTTT+TGG - chr8_4:6656888-6656907 None:intergenic 15.0%
!! AACATATAACTTATAATGAA+TGG - chr8_4:6656939-6656958 None:intergenic 15.0%
!! TTCATTATAAGTTATATGTT+AGG + chr8_4:6656939-6656958 Msa1310110:intron 15.0%
!! AAAACGTAAAATAAACATAA+GGG - chr8_4:6656966-6656985 None:intergenic 15.0%
!! TAAAACGTAAAATAAACATA+AGG - chr8_4:6656967-6656986 None:intergenic 15.0%
!!! ACTTGAACATTTTAAATATA+GGG - chr8_4:6656998-6657017 None:intergenic 15.0%
!!! AACTTGAACATTTTAAATAT+AGG - chr8_4:6656999-6657018 None:intergenic 15.0%
!!! TATATTTAAAATGTTCAAGT+TGG + chr8_4:6656998-6657017 Msa1310110:intron 15.0%
!!! TGGTTAAAATGTATATTTTT+TGG + chr8_4:6657319-6657338 Msa1310110:intron 15.0%
!! CTTGATATATAACATATTTA+TGG + chr8_4:6659031-6659050 Msa1310110:intron 15.0%
!! CAATATTTAGATAAAAATAC+CGG - chr8_4:6659494-6659513 None:intergenic 15.0%
!! ATAAGAATAAACTACTAAAG+GGG - chr8_4:6656473-6656492 None:intergenic 20.0%
!! GAATAAGAATAAACTACTAA+AGG - chr8_4:6656475-6656494 None:intergenic 20.0%
!! ACACCATTAATCAATTATAA+CGG - chr8_4:6656621-6656640 None:intergenic 20.0%
!! ATTAAACCTTATTCATTGTA+TGG + chr8_4:6656671-6656690 Msa1310110:intron 20.0%
!! ATTTAACCATACAATGAATA+AGG - chr8_4:6656680-6656699 None:intergenic 20.0%
!! ACAAAATTCGAGATAATTAA+AGG - chr8_4:6656715-6656734 None:intergenic 20.0%
!! CAAAATTACATGCTTTAATA+GGG - chr8_4:6656795-6656814 None:intergenic 20.0%
!! ACAAAATTACATGCTTTAAT+AGG - chr8_4:6656796-6656815 None:intergenic 20.0%
!! TAATTTGAAAGACTGATAAA+TGG + chr8_4:6656815-6656834 Msa1310110:intron 20.0%
!! AATTTGAAAGACTGATAAAT+GGG + chr8_4:6656816-6656835 Msa1310110:intron 20.0%
!!! AAGAAAATGTAACTTTTCTA+GGG + chr8_4:6656855-6656874 Msa1310110:intron 20.0%
!!! GTTTATTTTACGTTTTAAGT+CGG + chr8_4:6656970-6656989 Msa1310110:intron 20.0%
!!! CTTGAACATTTTAAATATAG+GGG - chr8_4:6656997-6657016 None:intergenic 20.0%
!!! TTAGAACCTTTTTAAACATA+GGG + chr8_4:6657220-6657239 Msa1310110:intron 20.0%
!!! CCTTTTATATAATATAGTGA+AGG - chr8_4:6657296-6657315 None:intergenic 20.0%
!! CCTTCACTATATTATATAAA+AGG + chr8_4:6657293-6657312 Msa1310110:intron 20.0%
!! CTATATTATATAAAAGGTTG+TGG + chr8_4:6657299-6657318 Msa1310110:intron 20.0%
!! GTTATCAAACTATATATATG+TGG - chr8_4:6657368-6657387 None:intergenic 20.0%
!!! ATCTCAATTTCATTGATAAT+TGG + chr8_4:6657665-6657684 Msa1310110:intron 20.0%
!!! ACTTTGATTATAAGATGTTT+TGG - chr8_4:6657849-6657868 None:intergenic 20.0%
!! TGCTGAATATTTAAATTTGT+GGG - chr8_4:6658728-6658747 None:intergenic 20.0%
!! AATTTAAATATTCAGCACAT+TGG + chr8_4:6658731-6658750 Msa1310110:intron 20.0%
!!! TTTTCTACTTTTTCTTATAG+TGG + chr8_4:6659516-6659535 Msa1310110:three_prime_UTR 20.0%
!!! CTGTTTTTTTGTCAAATTTC+AGG + chr8_4:6656352-6656371 Msa1310110:intron 25.0%
!! TTTTGTCAAATTTCAGGATA+TGG + chr8_4:6656358-6656377 Msa1310110:intron 25.0%
! TTTGTCAAATTTCAGGATAT+GGG + chr8_4:6656359-6656378 Msa1310110:intron 25.0%
! GAATTGGTATATGTAAAGAA+AGG - chr8_4:6656441-6656460 None:intergenic 25.0%
!!! ACAGTTTAATTTTGATACAC+TGG + chr8_4:6656498-6656517 Msa1310110:intron 25.0%
!! TCTAAAGTCAAACATTAGAT+TGG - chr8_4:6656560-6656579 None:intergenic 25.0%
!! CAAGAAAATGTAACTTTTCT+AGG + chr8_4:6656854-6656873 Msa1310110:intron 25.0%
!!! AATGATATTTTTATAGGAGC+TGG + chr8_4:6656901-6656920 Msa1310110:intron 25.0%
! AGAGTTAACTCAAAATTTGA+CGG - chr8_4:6657062-6657081 None:intergenic 25.0%
!! GTTAGAACCTTTTTAAACAT+AGG + chr8_4:6657219-6657238 Msa1310110:intron 25.0%
!! TAGAACCTTTTTAAACATAG+GGG + chr8_4:6657221-6657240 Msa1310110:intron 25.0%
! TGATTAGATACTAGTGTAAA+AGG - chr8_4:6657403-6657422 None:intergenic 25.0%
!!! CATTTTTTCACACCAATTTT+AGG + chr8_4:6657431-6657450 Msa1310110:intron 25.0%
! CAATATACCATTCCTAAAAT+TGG - chr8_4:6657446-6657465 None:intergenic 25.0%
! TTAGGAATGGTATATTGATA+AGG + chr8_4:6657449-6657468 Msa1310110:intron 25.0%
! ATAAACAAACCAGACATAAT+AGG + chr8_4:6657480-6657499 Msa1310110:intron 25.0%
! TTGGTTCAATAAAACAGAAA+GGG - chr8_4:6657830-6657849 None:intergenic 25.0%
!! TTTGGTTCAATAAAACAGAA+AGG - chr8_4:6657831-6657850 None:intergenic 25.0%
!! TGTTGTTTGAAAATAATGAC+AGG + chr8_4:6658171-6658190 Msa1310110:intron 25.0%
! ACCTAAAGTGAGAAATTATT+TGG + chr8_4:6658230-6658249 Msa1310110:CDS 25.0%
! CCTAAAGTGAGAAATTATTT+GGG + chr8_4:6658231-6658250 Msa1310110:CDS 25.0%
!! ATTATTTGGGATTGGAAATA+CGG + chr8_4:6658244-6658263 Msa1310110:CDS 25.0%
! GAAATCAAAATTTACTGGAA+GGG - chr8_4:6658300-6658319 None:intergenic 25.0%
! AGAAATCAAAATTTACTGGA+AGG - chr8_4:6658301-6658320 None:intergenic 25.0%
! GATGAGAAATCAAAATTTAC+TGG - chr8_4:6658305-6658324 None:intergenic 25.0%
!! TGGCATCTAAATAAAGTTTT+CGG - chr8_4:6658463-6658482 None:intergenic 25.0%
! TATGTGTGTGTAATTTACTT+TGG - chr8_4:6658483-6658502 None:intergenic 25.0%
! AAAATTGAAACTAACTGCAA+GGG - chr8_4:6658614-6658633 None:intergenic 25.0%
!! AAAGCACTAAAAAGAGAAAT+TGG + chr8_4:6658648-6658667 Msa1310110:intron 25.0%
! AAGCACTAAAAAGAGAAATT+GGG + chr8_4:6658649-6658668 Msa1310110:intron 25.0%
! GTGCTGAATATTTAAATTTG+TGG - chr8_4:6658729-6658748 None:intergenic 25.0%
! AACTATAAATAAAACACCCT+TGG - chr8_4:6658872-6658891 None:intergenic 25.0%
!!! GATGTTTTTTCTTGAAATGA+GGG - chr8_4:6658927-6658946 None:intergenic 25.0%
!!! TGATGTTTTTTCTTGAAATG+AGG - chr8_4:6658928-6658947 None:intergenic 25.0%
! ATTGTAGATAATTTATCTCC+TGG + chr8_4:6658985-6659004 Msa1310110:CDS 25.0%
! TTGTAGATAATTTATCTCCT+GGG + chr8_4:6658986-6659005 Msa1310110:CDS 25.0%
! ATTTAGATAAAAATACCGGT+AGG - chr8_4:6659490-6659509 None:intergenic 25.0%
! TTTCAGTTTAAAGTGGGAAT+TGG - chr8_4:6656317-6656336 None:intergenic 30.0%
ACAGAGAAAGAAGAACTTAA+GGG - chr8_4:6656413-6656432 None:intergenic 30.0%
TACAGAGAAAGAAGAACTTA+AGG - chr8_4:6656414-6656433 None:intergenic 30.0%
AAAGGGGAAAACAATTGAAT+TGG - chr8_4:6656457-6656476 None:intergenic 30.0%
CCATTAATCAATTATAACGG+TGG - chr8_4:6656618-6656637 None:intergenic 30.0%
CCACCGTTATAATTGATTAA+TGG + chr8_4:6656615-6656634 Msa1310110:intron 30.0%
GTAAAAAATCTTTACACCGA+CGG + chr8_4:6656639-6656658 Msa1310110:intron 30.0%
! TGAAGAAATTTTGCTGACAT+TGG - chr8_4:6657036-6657055 None:intergenic 30.0%
! AGAACCTTTTTAAACATAGG+GGG + chr8_4:6657222-6657241 Msa1310110:intron 30.0%
TGAAACCTAAAATAGAGGTA+AGG + chr8_4:6657251-6657270 Msa1310110:intron 30.0%
GAAACCTAAAATAGAGGTAA+GGG + chr8_4:6657252-6657271 Msa1310110:intron 30.0%
TGAAGGCTAAATTGTATGTT+TGG - chr8_4:6657279-6657298 None:intergenic 30.0%
!! TTTCACACCAATTTTAGGAA+TGG + chr8_4:6657436-6657455 Msa1310110:intron 30.0%
!! TTATGTCTGGTTTGTTTATC+CGG - chr8_4:6657479-6657498 None:intergenic 30.0%
AAAGAAATGCCTATTATGTC+TGG - chr8_4:6657492-6657511 None:intergenic 30.0%
TAATCATTAGACGAAAGCAA+GGG - chr8_4:6657553-6657572 None:intergenic 30.0%
ATAATCATTAGACGAAAGCA+AGG - chr8_4:6657554-6657573 None:intergenic 30.0%
ATGCATTTGTTCTTGATTGT+TGG + chr8_4:6657705-6657724 Msa1310110:intron 30.0%
TTAGCCTACATGTTATTGAT+TGG + chr8_4:6657730-6657749 Msa1310110:intron 30.0%
AATGCCAATCAATAACATGT+AGG - chr8_4:6657737-6657756 None:intergenic 30.0%
! TACATGTTATTGATTGGCAT+TGG + chr8_4:6657736-6657755 Msa1310110:intron 30.0%
ATTATCAACTTCCACATAGA+TGG - chr8_4:6657776-6657795 None:intergenic 30.0%
TATAACAATGTCGACAATTG+TGG - chr8_4:6658084-6658103 None:intergenic 30.0%
CCCAAATAATTTCTCACTTT+AGG - chr8_4:6658234-6658253 None:intergenic 30.0%
! AGTGAGAAATTATTTGGGAT+TGG + chr8_4:6658236-6658255 Msa1310110:CDS 30.0%
! TTTGATTTCTCATCCAGTTA+TGG + chr8_4:6658311-6658330 Msa1310110:intron 30.0%
CAAAATTGAAACTAACTGCA+AGG - chr8_4:6658615-6658634 None:intergenic 30.0%
!! CTTGCAGTTAGTTTCAATTT+TGG + chr8_4:6658613-6658632 Msa1310110:CDS 30.0%
TTAAATATTCAGCACATTGG+TGG + chr8_4:6658734-6658753 Msa1310110:intron 30.0%
! AAAAGCAAAGCAGATTTTGA+CGG + chr8_4:6658783-6658802 Msa1310110:intron 30.0%
TGTAGATAATTTATCTCCTG+GGG + chr8_4:6658987-6659006 Msa1310110:CDS 30.0%
GGCATGAAATATCACTAAAA+GGG - chr8_4:6659067-6659086 None:intergenic 30.0%
AGGCATGAAATATCACTAAA+AGG - chr8_4:6659068-6659087 None:intergenic 30.0%
!! TCAATCACATCTGTTTCTTT+TGG - chr8_4:6659349-6659368 None:intergenic 30.0%
ACACTATAAAATGTCTGCAA+TGG - chr8_4:6659398-6659417 None:intergenic 30.0%
! AGAAAAGTATGCATTCTCTT+AGG + chr8_4:6659461-6659480 Msa1310110:three_prime_UTR 30.0%
CGTCACAAGAAGTTAGTATA+TGG + chr8_4:6656055-6656074 Msa1310110:CDS 35.0%
GAAGAAGAAGAAGAAGAGAA+AGG - chr8_4:6656136-6656155 None:intergenic 35.0%
GTTGTGACTTATGTTGTTGT+TGG - chr8_4:6656213-6656232 None:intergenic 35.0%
ACTCAATCTCTCTAACAACT+TGG + chr8_4:6656270-6656289 Msa1310110:CDS 35.0%
GTTTAATTCATATACGCCGT+CGG - chr8_4:6656658-6656677 None:intergenic 35.0%
TGGCTTGAAACCTAAAATAG+AGG + chr8_4:6657246-6657265 Msa1310110:intron 35.0%
GGTATATTGATAAGGAGAAC+CGG + chr8_4:6657457-6657476 Msa1310110:intron 35.0%
CATAAACAATGAAAGGCAGA+AGG - chr8_4:6657523-6657542 None:intergenic 35.0%
TCTGCCTTTCATTGTTTATG+AGG + chr8_4:6657523-6657542 Msa1310110:intron 35.0%
CTGCCTTTCATTGTTTATGA+GGG + chr8_4:6657524-6657543 Msa1310110:intron 35.0%
TGCCTTTCATTGTTTATGAG+GGG + chr8_4:6657525-6657544 Msa1310110:intron 35.0%
!! TTATTGATTGGCATTGGCAT+TGG + chr8_4:6657742-6657761 Msa1310110:intron 35.0%
! AACTCTTTTACCCTAACATC+AGG + chr8_4:6657886-6657905 Msa1310110:intron 35.0%
TTTACCACATCCTGATGTTA+GGG - chr8_4:6657899-6657918 None:intergenic 35.0%
ATTTACCACATCCTGATGTT+AGG - chr8_4:6657900-6657919 None:intergenic 35.0%
! CGTAGTGGAATTTGAATCAA+TGG + chr8_4:6657951-6657970 Msa1310110:intron 35.0%
!! TACAAAGCGTTGTCAAATAG+AGG + chr8_4:6657996-6658015 Msa1310110:intron 35.0%
! TTGTGGATTGAGGAAAATAG+CGG - chr8_4:6658067-6658086 None:intergenic 35.0%
TTGAAAATAATGACAGGCAG+TGG + chr8_4:6658177-6658196 Msa1310110:intron 35.0%
TAAGCTGAATGTACCATAAC+TGG - chr8_4:6658327-6658346 None:intergenic 35.0%
TGAGTTATGGGTAAAAGATC+TGG + chr8_4:6658413-6658432 Msa1310110:CDS 35.0%
! ACCTATTTCTTTCAAGCAGT+TGG + chr8_4:6658571-6658590 Msa1310110:CDS 35.0%
ACCAACTGCTTGAAAGAAAT+AGG - chr8_4:6658575-6658594 None:intergenic 35.0%
! GGCTACATTGTTGTTACTTA+AGG + chr8_4:6658838-6658857 Msa1310110:intron 35.0%
TACTTAAGGTTTGACATCCA+AGG + chr8_4:6658852-6658871 Msa1310110:intron 35.0%
ACTTAAGGTTTGACATCCAA+GGG + chr8_4:6658853-6658872 Msa1310110:intron 35.0%
TAGTTAATGATTTCCCTCAC+CGG + chr8_4:6658887-6658906 Msa1310110:intron 35.0%
! TTTTTCTTGAAATGAGGGTC+TGG - chr8_4:6658922-6658941 None:intergenic 35.0%
GTAGATAATTTATCTCCTGG+GGG + chr8_4:6658988-6659007 Msa1310110:CDS 35.0%
AATCTCTTAAGTATTCTCGC+AGG - chr8_4:6659088-6659107 None:intergenic 35.0%
TGAAAAAGACAACCACAAGA+GGG - chr8_4:6659117-6659136 None:intergenic 35.0%
CACTGTCACACAATATAGAA+GGG - chr8_4:6659235-6659254 None:intergenic 35.0%
TCACTGTCACACAATATAGA+AGG - chr8_4:6659236-6659255 None:intergenic 35.0%
TCTATATTGTGTGACAGTGA+AGG + chr8_4:6659236-6659255 Msa1310110:CDS 35.0%
ATGGTTATTAAGCAACCCTA+TGG + chr8_4:6659259-6659278 Msa1310110:CDS 35.0%
TGGTTATTAAGCAACCCTAT+GGG + chr8_4:6659260-6659279 Msa1310110:CDS 35.0%
ATAAAATGTCTGCAATGGAC+AGG - chr8_4:6659393-6659412 None:intergenic 35.0%
ATATGTTCAACATCAACCAC+AGG + chr8_4:6659438-6659457 Msa1310110:three_prime_UTR 35.0%
TTGAAGAGAAAGAGGGGAAA+TGG + chr8_4:6655991-6656010 Msa1310110:exon 40.0%
TGAAGAGAAAGAGGGGAAAT+GGG + chr8_4:6655992-6656011 Msa1310110:exon 40.0%
GAAGAAGAGAAAGGACGAAA+GGG - chr8_4:6656127-6656146 None:intergenic 40.0%
AGAAGAAGAGAAAGGACGAA+AGG - chr8_4:6656128-6656147 None:intergenic 40.0%
TACTTGGGAAATAGAGGAAG+AGG - chr8_4:6656176-6656195 None:intergenic 40.0%
! AGCTGTTACTTGGGAAATAG+AGG - chr8_4:6656182-6656201 None:intergenic 40.0%
! GTCTTGTTCAGCTGTTACTT+GGG - chr8_4:6656191-6656210 None:intergenic 40.0%
! TGCTGACATTGGTTACGTAA+GGG - chr8_4:6657025-6657044 None:intergenic 40.0%
! TTGCTGACATTGGTTACGTA+AGG - chr8_4:6657026-6657045 None:intergenic 40.0%
! TGGTCCCTTACCTCTATTTT+AGG - chr8_4:6657259-6657278 None:intergenic 40.0%
GCCTTTCATTGTTTATGAGG+GGG + chr8_4:6657526-6657545 Msa1310110:intron 40.0%
ACCCCCTCATAAACAATGAA+AGG - chr8_4:6657530-6657549 None:intergenic 40.0%
TTTACCCTAACATCAGGATG+TGG + chr8_4:6657892-6657911 Msa1310110:intron 40.0%
TCAGGATGTGGTAAATGAGT+AGG + chr8_4:6657904-6657923 Msa1310110:intron 40.0%
AAATAGCAGCTATAGCGTAG+TGG + chr8_4:6657936-6657955 Msa1310110:intron 40.0%
!! AAAGCGTTGTCAAATAGAGG+CGG + chr8_4:6657999-6658018 Msa1310110:intron 40.0%
! ATGTCGACAATTGTGGATTG+AGG - chr8_4:6658077-6658096 None:intergenic 40.0%
!! GAGTAAGTGTGCTGTTTATC+AGG - chr8_4:6658138-6658157 None:intergenic 40.0%
AAATAATGACAGGCAGTGGT+AGG + chr8_4:6658181-6658200 Msa1310110:intron 40.0%
ACTTTGATTCCATGTGCAGA+TGG + chr8_4:6658380-6658399 Msa1310110:intron 40.0%
!! CAGTTGGTAGAATCATATCC+TGG + chr8_4:6658587-6658606 Msa1310110:CDS 40.0%
! TCACTGTCCTAATGGTTTGT+TGG + chr8_4:6658674-6658693 Msa1310110:intron 40.0%
AATCCAGCCAACAAACCATT+AGG - chr8_4:6658684-6658703 None:intergenic 40.0%
!! AATGGTTTGTTGGCTGGATT+TGG + chr8_4:6658684-6658703 Msa1310110:intron 40.0%
ATTTGTGGGATTGTGACTAC+AGG - chr8_4:6658714-6658733 None:intergenic 40.0%
! AAGAGTTTTGCAGAAGCCTT+TGG + chr8_4:6658954-6658973 Msa1310110:CDS 40.0%
TCTACAATAGCACCAACCAA+AGG - chr8_4:6658973-6658992 None:intergenic 40.0%
! GAGATTCATTTTCCCTCTTG+TGG + chr8_4:6659102-6659121 Msa1310110:intron 40.0%
GTGAAAAAGACAACCACAAG+AGG - chr8_4:6659118-6659137 None:intergenic 40.0%
!! CTTGTGGTTGTCTTTTTCAC+AGG + chr8_4:6659118-6659137 Msa1310110:intron 40.0%
GGTATTTGTACAGTCTGATG+TGG + chr8_4:6659139-6659158 Msa1310110:intron 40.0%
GTGCATCAACTTCATCAAAC+TGG - chr8_4:6659190-6659209 None:intergenic 40.0%
TATTGTGTGACAGTGAAGGA+TGG + chr8_4:6659240-6659259 Msa1310110:CDS 40.0%
GGTTATTAAGCAACCCTATG+GGG + chr8_4:6659261-6659280 Msa1310110:CDS 40.0%
TTCTGCATGAATCTCTCTCT+CGG - chr8_4:6659294-6659313 None:intergenic 40.0%
GAGATTCATGCAGAATTCGA+AGG + chr8_4:6659299-6659318 Msa1310110:CDS 40.0%
ATTCATGCAGAATTCGAAGG+AGG + chr8_4:6659302-6659321 Msa1310110:CDS 40.0%
TTCATGCAGAATTCGAAGGA+GGG + chr8_4:6659303-6659322 Msa1310110:CDS 40.0%
AAGGAGGGAAAATCTATCGA+AGG + chr8_4:6659318-6659337 Msa1310110:CDS 40.0%
! GAATGCATACTTTTCTCCTG+TGG - chr8_4:6659457-6659476 None:intergenic 40.0%
!! GAAATGGGTTATTGCTGTGG+AGG + chr8_4:6656007-6656026 Msa1310110:exon 45.0%
GGTGAAAATGAGAGTGAGAG+TGG - chr8_4:6656106-6656125 None:intergenic 45.0%
GAAATAGAGGAAGAGGAGAG+TGG - chr8_4:6656169-6656188 None:intergenic 45.0%
!! GGTCTTGTTCAGCTGTTACT+TGG - chr8_4:6656192-6656211 None:intergenic 45.0%
ACGCACATGGATGACTTATG+GGG - chr8_4:6657107-6657126 None:intergenic 45.0%
GACGCACATGGATGACTTAT+GGG - chr8_4:6657108-6657127 None:intergenic 45.0%
AGACGCACATGGATGACTTA+TGG - chr8_4:6657109-6657128 None:intergenic 45.0%
GTGTTTAACAGAGACGCACA+TGG - chr8_4:6657120-6657139 None:intergenic 45.0%
CCAGCCCCCTATGTTTAAAA+AGG - chr8_4:6657229-6657248 None:intergenic 45.0%
! CCTTTTTAAACATAGGGGGC+TGG + chr8_4:6657226-6657245 Msa1310110:intron 45.0%
CATCCAATATCCACCATGAG+TGG - chr8_4:6657640-6657659 None:intergenic 45.0%
!! CTCATGGTGGATATTGGATG+TGG + chr8_4:6657640-6657659 Msa1310110:CDS 45.0%
! TGGCTTGGATACCATCTATG+TGG + chr8_4:6657762-6657781 Msa1310110:intron 45.0%
GCAGTGGTAGGTTTCTTATG+TGG + chr8_4:6658193-6658212 Msa1310110:CDS 45.0%
TGGGATTGGAAATACGGCAA+AGG + chr8_4:6658250-6658269 Msa1310110:CDS 45.0%
GGGATTGGAAATACGGCAAA+GGG + chr8_4:6658251-6658270 Msa1310110:CDS 45.0%
TGGAAATACGGCAAAGGGTA+AGG + chr8_4:6658256-6658275 Msa1310110:intron 45.0%
! ATGGGTAAAAGATCTGGCTC+TGG + chr8_4:6658419-6658438 Msa1310110:CDS 45.0%
!! ATTGGGTGTCACTGTCCTAA+TGG + chr8_4:6658666-6658685 Msa1310110:intron 45.0%
!! TGTCCTAATGGTTTGTTGGC+TGG + chr8_4:6658678-6658697 Msa1310110:intron 45.0%
! GTTTTGCAGAAGCCTTTGGT+TGG + chr8_4:6658958-6658977 Msa1310110:CDS 45.0%
TAATTTATCTCCTGGGGGAC+AGG + chr8_4:6658993-6659012 Msa1310110:CDS 45.0%
AGAAAATATACCTGTCCCCC+AGG - chr8_4:6659006-6659025 None:intergenic 45.0%
ACAGTCTGATGTGGTTGAAG+TGG + chr8_4:6659148-6659167 Msa1310110:CDS 45.0%
TAAGCAACCCTATGGGGATT+AGG + chr8_4:6659267-6659286 Msa1310110:CDS 45.0%
CATTCTCTTAGGATGCCTAC+CGG + chr8_4:6659472-6659491 Msa1310110:three_prime_UTR 45.0%
!! ATTTATTTATTTGTAATTTA+AGG + chr8_4:6659557-6659576 Msa1310110:three_prime_UTR 5.0%
!! GGGGAAATGGGTTATTGCTG+TGG + chr8_4:6656004-6656023 Msa1310110:exon 50.0%
TGGGTTATTGCTGTGGAGGT+TGG + chr8_4:6656011-6656030 Msa1310110:CDS 50.0%
! CTCTGTCTAGAATGTCCACG+TGG + chr8_4:6657078-6657097 Msa1310110:intron 50.0%
CGCACATGGATGACTTATGG+GGG - chr8_4:6657106-6657125 None:intergenic 50.0%
GTGCGTCTCTGTTAAACACG+TGG + chr8_4:6657121-6657140 Msa1310110:intron 50.0%
!! CTGCCACTCATGGTGGATAT+TGG + chr8_4:6657634-6657653 Msa1310110:CDS 50.0%
!! GATTGGCATTGGCATTGGCT+TGG + chr8_4:6657747-6657766 Msa1310110:intron 50.0%
TGGTGAAGCGTGCTGAGTTA+TGG + chr8_4:6658400-6658419 Msa1310110:CDS 50.0%
GGTGAAGCGTGCTGAGTTAT+GGG + chr8_4:6658401-6658420 Msa1310110:CDS 50.0%
GAAACTAACTGCAAGGGTCC+AGG - chr8_4:6658608-6658627 None:intergenic 50.0%
GACTGCAGGCGATCACTTAT+TGG + chr8_4:6658817-6658836 Msa1310110:intron 50.0%
TCTCGGTCCTAATCCCCATA+GGG - chr8_4:6659277-6659296 None:intergenic 50.0%
!! TTCCAGTCTGGTACTGGTGC+AGG - chr8_4:6657592-6657611 None:intergenic 55.0%
ACCAGTACCAGACTGGAACC+AGG + chr8_4:6657594-6657613 Msa1310110:CDS 55.0%
ACCTGGTTCCAGTCTGGTAC+TGG - chr8_4:6657598-6657617 None:intergenic 55.0%
GCAAACACCTGGTTCCAGTC+TGG - chr8_4:6657604-6657623 None:intergenic 55.0%
CACGCTTCACCATCTGCACA+TGG - chr8_4:6658392-6658411 None:intergenic 55.0%
CTCTCGGTCCTAATCCCCAT+AGG - chr8_4:6659278-6659297 None:intergenic 55.0%
!! TGACTTATGGGGGTGCCACG+TGG - chr8_4:6657096-6657115 None:intergenic 60.0%
CTCCTGCACCAGTACCAGAC+TGG + chr8_4:6657587-6657606 Msa1310110:CDS 60.0%
GAGCAGGGTCTGCAAACACC+TGG - chr8_4:6657615-6657634 None:intergenic 60.0%
AGACCCTGCTCTGCCACTCA+TGG + chr8_4:6657624-6657643 Msa1310110:CDS 60.0%
CCACCATGAGTGGCAGAGCA+GGG - chr8_4:6657630-6657649 None:intergenic 60.0%
TCCACCATGAGTGGCAGAGC+AGG - chr8_4:6657631-6657650 None:intergenic 60.0%
CTGGACACTGCATCCGGTGA+GGG - chr8_4:6658903-6658922 None:intergenic 60.0%
TCTGGACACTGCATCCGGTG+AGG - chr8_4:6658904-6658923 None:intergenic 60.0%
GAGGGTCTGGACACTGCATC+CGG - chr8_4:6658909-6658928 None:intergenic 60.0%
CCCTGCTCTGCCACTCATGG+TGG + chr8_4:6657627-6657646 Msa1310110:CDS 65.0%
CGGCGTGAGACTGTGACTGC+AGG + chr8_4:6658803-6658822 Msa1310110:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 6655990 6659598 6655990 ID=Msa1310110;Name=Msa1310110
chr8_4 mRNA 6655990 6659598 6655990 ID=Msa1310110-mRNA-1;Parent=Msa1310110;Name=Msa1310110-mRNA-1;_AED=0.41;_eAED=0.41;_QI=20|1|1|1|1|1|8|234|317
chr8_4 exon 6655990 6656291 6655990 ID=Msa1310110-mRNA-1:exon:2236;Parent=Msa1310110-mRNA-1
chr8_4 exon 6656374 6656430 6656374 ID=Msa1310110-mRNA-1:exon:2237;Parent=Msa1310110-mRNA-1
chr8_4 exon 6657586 6657661 6657586 ID=Msa1310110-mRNA-1:exon:2238;Parent=Msa1310110-mRNA-1
chr8_4 exon 6658193 6658272 6658193 ID=Msa1310110-mRNA-1:exon:2239;Parent=Msa1310110-mRNA-1
chr8_4 exon 6658399 6658448 6658399 ID=Msa1310110-mRNA-1:exon:2240;Parent=Msa1310110-mRNA-1
chr8_4 exon 6658550 6658634 6658550 ID=Msa1310110-mRNA-1:exon:2241;Parent=Msa1310110-mRNA-1
chr8_4 exon 6658916 6659014 6658916 ID=Msa1310110-mRNA-1:exon:2242;Parent=Msa1310110-mRNA-1
chr8_4 exon 6659140 6659598 6659140 ID=Msa1310110-mRNA-1:exon:2243;Parent=Msa1310110-mRNA-1
chr8_4 five_prime_UTR 6655990 6656009 6655990 ID=Msa1310110-mRNA-1:five_prime_utr;Parent=Msa1310110-mRNA-1
chr8_4 CDS 6656010 6656291 6656010 ID=Msa1310110-mRNA-1:cds;Parent=Msa1310110-mRNA-1
chr8_4 CDS 6656374 6656430 6656374 ID=Msa1310110-mRNA-1:cds;Parent=Msa1310110-mRNA-1
chr8_4 CDS 6657586 6657661 6657586 ID=Msa1310110-mRNA-1:cds;Parent=Msa1310110-mRNA-1
chr8_4 CDS 6658193 6658272 6658193 ID=Msa1310110-mRNA-1:cds;Parent=Msa1310110-mRNA-1
chr8_4 CDS 6658399 6658448 6658399 ID=Msa1310110-mRNA-1:cds;Parent=Msa1310110-mRNA-1
chr8_4 CDS 6658550 6658634 6658550 ID=Msa1310110-mRNA-1:cds;Parent=Msa1310110-mRNA-1
chr8_4 CDS 6658916 6659014 6658916 ID=Msa1310110-mRNA-1:cds;Parent=Msa1310110-mRNA-1
chr8_4 CDS 6659140 6659364 6659140 ID=Msa1310110-mRNA-1:cds;Parent=Msa1310110-mRNA-1
chr8_4 three_prime_UTR 6659365 6659598 6659365 ID=Msa1310110-mRNA-1:three_prime_utr;Parent=Msa1310110-mRNA-1
Gene Sequence

>Msa1310110

ATGGGTTATTGCTGTGGAGGTTGGCGTATATTACAGATACAGAGTCGTCACAAGAAGTTAGTATATGGCATTGATACTGCTTTAGTAATGTTACCACTCTCACTCTCATTTTCACCCTTTCGTCCTTTCTCTTCTTCTTCTTCTTCTTCTTCTCTTCCACTCTCCTCTTCCTCTATTTCCCAAGTAACAGCTGAACAAGACCAACAACAACATAAGTCACAACGAAAAAGCTCACAACTCGTCGCATTAGAATATGCTGAACTCAATCTCTCTAACAACTTGGATATGGGTCATGTCAGAATCAGACAACATGTCAATCCCTTAAGTTCTTCTTTCTCTACTCCTGCACCAGTACCAGACTGGAACCAGGTGTTTGCAGACCCTGCTCTGCCACTCATGGTGGATATTGGATGTGGCAGTGGTAGGTTTCTTATGTGGCTTGCAAAAAGAACACCTAAAGTGAGAAATTATTTGGGATTGGAAATACGGCAAAGGATGGTGAAGCGTGCTGAGTTATGGGTAAAAGATCTGGCTCTGGATAACATACATTTCTTGTTTGCAAATGCACCTATTTCTTTCAAGCAGTTGGTAGAATCATATCCTGGACCCTTGCAGTTAGTTTCAATTTTGTGTCCAGACCCTCATTTCAAGAAAAAACATCATAAAAGAAGAGTTTTGCAGAAGCCTTTGGTTGGTGCTATTGTAGATAATTTATCTCCTGGGGGACAGGTATTTGTACAGTCTGATGTGGTTGAAGTGGCACTTGACATGAAAAACCAGTTTGATGAAGTTGATGCACTTAGTCACACAGATGCTTTGAACCCTTCTATATTGTGTGACAGTGAAGGATGGTTATTAAGCAACCCTATGGGGATTAGGACCGAGAGAGAGATTCATGCAGAATTCGAAGGAGGGAAAATCTATCGAAGGTTGTACCAAAAGAAACAGATGTGA

Protein sequence

>Msa1310110

MGYCCGGWRILQIQSRHKKLVYGIDTALVMLPLSLSFSPFRPFSSSSSSSSLPLSSSSISQVTAEQDQQQHKSQRKSSQLVALEYAELNLSNNLDMGHVRIRQHVNPLSSSFSTPAPVPDWNQVFADPALPLMVDIGCGSGRFLMWLAKRTPKVRNYLGLEIRQRMVKRAELWVKDLALDNIHFLFANAPISFKQLVESYPGPLQLVSILCPDPHFKKKHHKRRVLQKPLVGAIVDNLSPGGQVFVQSDVVEVALDMKNQFDEVDALSHTDALNPSILCDSEGWLLSNPMGIRTEREIHAEFEGGKIYRRLYQKKQM*