Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297610 | KEH38942.1 | 86.219 | 283 | 26 | 4 | 1 | 274 | 1 | 279 | 1.61e-145 | 419 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297610 | sp|Q8LJS2|HDT1_SOYBN | 58.609 | 302 | 90 | 9 | 1 | 274 | 1 | 295 | 6.56e-93 | 279 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297610 | A0A072VB01 | 86.219 | 283 | 26 | 4 | 1 | 274 | 1 | 279 | 7.71e-146 | 419 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0297610 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030200 | Msa0297610 | 0.816854 | 4.462361e-52 | -8.615850e-47 |
| Msa0033110 | Msa0297610 | 0.806502 | 7.973811e-50 | -8.615850e-47 |
| Msa0033260 | Msa0297610 | 0.804563 | 2.034813e-49 | -8.615850e-47 |
| Msa0040690 | Msa0297610 | 0.827258 | 1.727912e-54 | -8.615850e-47 |
| Msa0059040 | Msa0297610 | 0.807825 | 4.184197e-50 | -8.615850e-47 |
| Msa0059110 | Msa0297610 | 0.813769 | 2.164251e-51 | -8.615850e-47 |
| Msa0070700 | Msa0297610 | 0.803742 | 3.014224e-49 | -8.615850e-47 |
| Msa0072420 | Msa0297610 | 0.817631 | 2.983913e-52 | -8.615850e-47 |
| Msa0086750 | Msa0297610 | 0.815115 | 1.090352e-51 | -8.615850e-47 |
| Msa0090520 | Msa0297610 | 0.812934 | 3.302237e-51 | -8.615850e-47 |
| Msa0091410 | Msa0297610 | 0.803225 | 3.858754e-49 | -8.615850e-47 |
| Msa0105370 | Msa0297610 | 0.831543 | 1.572909e-55 | -8.615850e-47 |
| Msa0115130 | Msa0297610 | 0.805957 | 1.038606e-49 | -8.615850e-47 |
| Msa0115400 | Msa0297610 | 0.802187 | 6.318532e-49 | -8.615850e-47 |
| Msa0118590 | Msa0297610 | 0.811018 | 8.636370e-51 | -8.615850e-47 |
| Msa0118710 | Msa0297610 | 0.801711 | 7.914765e-49 | -8.615850e-47 |
| Msa0120880 | Msa0297610 | 0.847191 | 1.351797e-59 | -8.615850e-47 |
| Msa0137990 | Msa0297610 | 0.815145 | 1.073757e-51 | -8.615850e-47 |
| Msa0140770 | Msa0297610 | -0.820571 | 6.391885e-53 | -8.615850e-47 |
| Msa0144370 | Msa0297610 | 0.803381 | 3.581628e-49 | -8.615850e-47 |
| Msa0152220 | Msa0297610 | 0.819176 | 1.332300e-52 | -8.615850e-47 |
| Msa0170200 | Msa0297610 | 0.806721 | 7.170265e-50 | -8.615850e-47 |
| Msa0175750 | Msa0297610 | 0.805374 | 1.376808e-49 | -8.615850e-47 |
| Msa0189300 | Msa0297610 | 0.820002 | 8.634211e-53 | -8.615850e-47 |
| Msa0189700 | Msa0297610 | 0.800107 | 1.683383e-48 | -8.615850e-47 |
| Msa0202410 | Msa0297610 | 0.808522 | 2.971479e-50 | -8.615850e-47 |
| Msa0204960 | Msa0297610 | 0.841779 | 3.862135e-58 | -8.615850e-47 |
| Msa0230490 | Msa0297610 | 0.811592 | 6.483252e-51 | -8.615850e-47 |
| Msa0232010 | Msa0297610 | 0.800020 | 1.753268e-48 | -8.615850e-47 |
| Msa0232080 | Msa0297610 | 0.803484 | 3.409612e-49 | -8.615850e-47 |
| Msa0240900 | Msa0297610 | 0.836743 | 7.825229e-57 | -8.615850e-47 |
| Msa0257520 | Msa0297610 | 0.806168 | 9.375413e-50 | -8.615850e-47 |
| Msa0258390 | Msa0297610 | 0.966124 | 1.668941e-125 | -8.615850e-47 |
| Msa0281530 | Msa0297610 | 0.827383 | 1.613028e-54 | -8.615850e-47 |
| Msa0289580 | Msa0297610 | 0.830104 | 3.543042e-55 | -8.615850e-47 |
| Msa0289610 | Msa0297610 | 0.821701 | 3.509975e-53 | -8.615850e-47 |
| Msa0295460 | Msa0297610 | -0.806085 | 9.761168e-50 | -8.615850e-47 |
| Msa0297610 | Msa0317970 | 0.844970 | 5.435960e-59 | -8.615850e-47 |
| Msa0297610 | Msa0322240 | 0.854394 | 1.267310e-61 | -8.615850e-47 |
| Msa0297610 | Msa0326480 | 0.821121 | 4.778851e-53 | -8.615850e-47 |
| Msa0297610 | Msa0327300 | 0.815522 | 8.853701e-52 | -8.615850e-47 |
| Msa0297610 | Msa0327330 | 0.803433 | 3.494681e-49 | -8.615850e-47 |
| Msa0297610 | Msa0335730 | 0.849848 | 2.483803e-60 | -8.615850e-47 |
| Msa0297610 | Msa0340380 | 0.809239 | 2.087455e-50 | -8.615850e-47 |
| Msa0297610 | Msa0343500 | 0.801979 | 6.971865e-49 | -8.615850e-47 |
| Msa0297610 | Msa0357900 | 0.864345 | 1.299892e-64 | -8.615850e-47 |
| Msa0297610 | Msa0393370 | 0.801644 | 8.168316e-49 | -8.615850e-47 |
| Msa0297610 | Msa0437020 | 0.832754 | 7.891127e-56 | -8.615850e-47 |
| Msa0297610 | Msa0472550 | 0.816734 | 4.747674e-52 | -8.615850e-47 |
| Msa0297610 | Msa0472620 | 0.836518 | 8.929760e-57 | -8.615850e-47 |
| Msa0297610 | Msa0479760 | -0.810943 | 8.964433e-51 | -8.615850e-47 |
| Msa0297610 | Msa0485510 | 0.800982 | 1.116249e-48 | -8.615850e-47 |
| Msa0297610 | Msa0510930 | 0.823744 | 1.174367e-53 | -8.615850e-47 |
| Msa0297610 | Msa0523430 | -0.801848 | 7.417499e-49 | -8.615850e-47 |
| Msa0297610 | Msa0554920 | 0.831436 | 1.671518e-55 | -8.615850e-47 |
| Msa0297610 | Msa0581280 | 0.839057 | 1.989473e-57 | -8.615850e-47 |
| Msa0297610 | Msa0583360 | -0.803391 | 3.564672e-49 | -8.615850e-47 |
| Msa0297610 | Msa0584260 | 0.803264 | 3.786747e-49 | -8.615850e-47 |
| Msa0297610 | Msa0586420 | 0.812374 | 4.378872e-51 | -8.615850e-47 |
| Msa0297610 | Msa0588360 | 0.809876 | 1.523344e-50 | -8.615850e-47 |
| Msa0297610 | Msa0626630 | 0.814808 | 1.275675e-51 | -8.615850e-47 |
| Msa0297610 | Msa0642160 | 0.827245 | 1.739957e-54 | -8.615850e-47 |
| Msa0297610 | Msa0648780 | 0.810148 | 1.331094e-50 | -8.615850e-47 |
| Msa0297610 | Msa0649020 | 0.818121 | 2.312051e-52 | -8.615850e-47 |
| Msa0297610 | Msa0649050 | 0.816777 | 4.641645e-52 | -8.615850e-47 |
| Msa0297610 | Msa0664560 | 0.849098 | 4.020567e-60 | -8.615850e-47 |
| Msa0297610 | Msa0664750 | 0.817268 | 3.601497e-52 | -8.615850e-47 |
| Msa0297610 | Msa0686950 | -0.803806 | 2.924610e-49 | -8.615850e-47 |
| Msa0297610 | Msa0691530 | 0.826465 | 2.673042e-54 | -8.615850e-47 |
| Msa0297610 | Msa0707250 | 0.842511 | 2.473315e-58 | -8.615850e-47 |
| Msa0297610 | Msa0741440 | 0.808292 | 3.327664e-50 | -8.615850e-47 |
| Msa0297610 | Msa0765080 | 0.816951 | 4.244427e-52 | -8.615850e-47 |
| Msa0297610 | Msa0796580 | -0.840244 | 9.770862e-58 | -8.615850e-47 |
| Msa0297610 | Msa0822500 | 0.812461 | 4.191656e-51 | -8.615850e-47 |
| Msa0297610 | Msa0827520 | -0.805662 | 1.197972e-49 | -8.615850e-47 |
| Msa0297610 | Msa0833950 | -0.820923 | 5.307071e-53 | -8.615850e-47 |
| Msa0297610 | Msa1006840 | 0.823963 | 1.043512e-53 | -8.615850e-47 |
| Msa0297610 | Msa1012740 | 0.866398 | 2.935655e-65 | -8.615850e-47 |
| Msa0297610 | Msa1012770 | 0.803940 | 2.742015e-49 | -8.615850e-47 |
| Msa0297610 | Msa1021520 | 0.878741 | 2.197527e-69 | -8.615850e-47 |
| Msa0297610 | Msa1060230 | 0.830360 | 3.068595e-55 | -8.615850e-47 |
| Msa0297610 | Msa1060260 | 0.807025 | 6.181838e-50 | -8.615850e-47 |
| Msa0297610 | Msa1080640 | 0.806459 | 8.141383e-50 | -8.615850e-47 |
| Msa0297610 | Msa1089450 | 0.841062 | 5.968309e-58 | -8.615850e-47 |
| Msa0297610 | Msa1105460 | 0.811086 | 8.344836e-51 | -8.615850e-47 |
| Msa0297610 | Msa1122310 | -0.809977 | 1.449141e-50 | -8.615850e-47 |
| Msa0297610 | Msa1123770 | 0.859666 | 3.531482e-63 | -8.615850e-47 |
| Msa0297610 | Msa1135890 | 0.836671 | 8.162048e-57 | -8.615850e-47 |
| Msa0297610 | Msa1143370 | -0.830170 | 3.415015e-55 | -8.615850e-47 |
| Msa0297610 | Msa1148910 | 0.826083 | 3.295679e-54 | -8.615850e-47 |
| Msa0297610 | Msa1160740 | -0.815454 | 9.167707e-52 | -8.615850e-47 |
| Msa0297610 | Msa1169910 | 0.861183 | 1.227281e-63 | -8.615850e-47 |
| Msa0297610 | Msa1170670 | 0.813005 | 3.186147e-51 | -8.615850e-47 |
| Msa0297610 | Msa1209200 | 0.838892 | 2.195125e-57 | -8.615850e-47 |
| Msa0297610 | Msa1211420 | -0.810260 | 1.259056e-50 | -8.615850e-47 |
| Msa0297610 | Msa1218450 | 0.817442 | 3.291434e-52 | -8.615850e-47 |
| Msa0297610 | Msa1225860 | -0.805195 | 1.501075e-49 | -8.615850e-47 |
| Msa0297610 | Msa1262890 | 0.821069 | 4.911558e-53 | -8.615850e-47 |
| Msa0297610 | Msa1275680 | 0.818017 | 2.440613e-52 | -8.615850e-47 |
| Msa0297610 | Msa1277260 | 0.818736 | 1.677246e-52 | -8.615850e-47 |
| Msa0297610 | Msa1315890 | 0.845443 | 4.047934e-59 | -8.615850e-47 |
| Msa0297610 | Msa1372770 | -0.803518 | 3.354711e-49 | -8.615850e-47 |
| Msa0297610 | Msa1385720 | 0.860484 | 2.000805e-63 | -8.615850e-47 |
| Msa0297610 | Msa1393570 | 0.834791 | 2.443699e-56 | -8.615850e-47 |
| Msa0297610 | Msa1405930 | 0.818084 | 2.357022e-52 | -8.615850e-47 |
| Msa0297610 | Msa1434090 | 0.851834 | 6.856217e-61 | -8.615850e-47 |
| Msa0297610 | Msa1435390 | 0.869971 | 2.074866e-66 | -8.615850e-47 |
| Msa0297610 | Msa1440310 | 0.838200 | 3.311808e-57 | -8.615850e-47 |
| Msa0297610 | Msa1440930 | 0.864129 | 1.518720e-64 | -8.615850e-47 |
| Msa0297610 | Msa1445910 | -0.819740 | 9.908456e-53 | -8.615850e-47 |
| Msa0297610 | Msa1460370 | 0.800231 | 1.587895e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297610 | MtrunA17_Chr2g0320884 | 81.271 | 299 | 27 | 5 | 1 | 274 | 35 | 329 | 4.90e-140 | 397 |
| Msa0297610 | MtrunA17_Chr4g0027181 | 46.502 | 243 | 121 | 4 | 1 | 240 | 5 | 241 | 9.81e-53 | 172 |
| Msa0297610 | MtrunA17_Chr7g0265761 | 41.558 | 308 | 127 | 8 | 1 | 274 | 1 | 289 | 3.81e-47 | 159 |
| Msa0297610 | MtrunA17_Chr4g0027191 | 68.966 | 87 | 27 | 0 | 2 | 88 | 6 | 92 | 1.17e-34 | 128 |
| Msa0297610 | MtrunA17_Chr4g0027191 | 53.125 | 96 | 34 | 4 | 179 | 271 | 282 | 369 | 1.59e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297610 | AT5G03740.1 | 39.535 | 301 | 145 | 9 | 1 | 273 | 1 | 292 | 4.94e-43 | 149 |
| Msa0297610 | AT5G22650.2 | 40.068 | 292 | 134 | 9 | 1 | 259 | 1 | 284 | 1.12e-32 | 122 |
| Msa0297610 | AT5G22650.1 | 39.932 | 293 | 134 | 10 | 1 | 259 | 1 | 285 | 4.70e-31 | 117 |
| Msa0297610 | AT3G44750.2 | 51.807 | 83 | 37 | 2 | 1 | 83 | 1 | 80 | 6.02e-21 | 89.4 |
| Msa0297610 | AT3G44750.1 | 51.807 | 83 | 37 | 2 | 1 | 83 | 1 | 80 | 6.36e-21 | 89.4 |
| Msa0297610 | AT2G27840.4 | 42.222 | 90 | 47 | 3 | 1 | 88 | 1 | 87 | 1.42e-15 | 72.8 |
| Msa0297610 | AT2G27840.1 | 42.222 | 90 | 47 | 3 | 1 | 88 | 1 | 87 | 2.10e-15 | 72.0 |
| Msa0297610 | AT2G27840.3 | 30.189 | 212 | 90 | 7 | 1 | 194 | 1 | 172 | 2.42e-12 | 65.1 |
Find 88 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTGTTTCCAATGGAGTTT+TGG | 0.108547 | 2_3:+51325535 | Msa0297610:exon |
| TCCTCCAGACTTGGGAGTTT+TGG | 0.188316 | 2_3:-51328271 | None:intergenic |
| GGAGTCTTTCCACCTTTCTT+AGG | 0.193593 | 2_3:-51328237 | None:intergenic |
| ATATAGTGATTCAGGGAAAA+AGG | 0.211279 | 2_3:-51325433 | None:intergenic |
| TTGTGATTATATAGTGATTC+AGG | 0.214608 | 2_3:-51325441 | None:intergenic |
| GAAACTTTCTCCTCTGCTTT+TGG | 0.244330 | 2_3:-51326880 | None:intergenic |
| GAGAGAGTAATGAGTATGTT+AGG | 0.245853 | 2_3:-51325511 | None:intergenic |
| GAAAGTTTCTGAACCTAAAA+AGG | 0.272635 | 2_3:+51326894 | Msa0297610:CDS |
| TAGCGGGGTTAGGAGTAAAT+TGG | 0.289159 | 2_3:+51328896 | Msa0297610:three_prime_UTR |
| AATCTAAACGCAATGAATTT+AGG | 0.301835 | 2_3:-51328672 | None:intergenic |
| GATGAATCTGATGATGAAAA+TGG | 0.302701 | 2_3:+51327003 | Msa0297610:CDS |
| TGGGGAACAAAAGCTTGTTT+TGG | 0.309523 | 2_3:+51326069 | Msa0297610:CDS |
| TAATGAGTATGTTAGGGTTT+TGG | 0.315356 | 2_3:-51325504 | None:intergenic |
| TTTGATTTCTTGGTAGAAAC+TGG | 0.315658 | 2_3:-51327517 | None:intergenic |
| CATTGGGCCTCTTCTTTCCC+TGG | 0.324129 | 2_3:-51327477 | None:intergenic |
| TCTTCATCTTCCTCATCCTT+TGG | 0.331069 | 2_3:-51326964 | None:intergenic |
| TGGAAGCTGTTTGACTTTGA+TGG | 0.335428 | 2_3:+51328637 | Msa0297610:three_prime_UTR |
| ACAACCTTCACGTGTTTAAC+AGG | 0.347024 | 2_3:-51326937 | None:intergenic |
| TTTAACAGGTGCAGCATTCT+TGG | 0.349198 | 2_3:-51326923 | None:intergenic |
| TGAATTAGGTGCTGAGGTTA+AGG | 0.367665 | 2_3:+51325832 | Msa0297610:intron |
| AGGACATTCAACTCTGAAAC+TGG | 0.374828 | 2_3:+51328429 | Msa0297610:intron |
| TTATGCCACTCGAGCTATAT+AGG | 0.375198 | 2_3:+51328727 | Msa0297610:three_prime_UTR |
| TGGTTATTTACCTCAAAGTT+GGG | 0.376973 | 2_3:+51326050 | Msa0297610:CDS |
| TTCTGCTCTGTGTTAATCAA+TGG | 0.388646 | 2_3:-51326751 | None:intergenic |
| GCAGCTGCATCAAGGTCATA+TGG | 0.393293 | 2_3:-51325878 | None:intergenic |
| GAGTCTTTCCACCTTTCTTA+GGG | 0.394889 | 2_3:-51328236 | None:intergenic |
| GAAATGAACACTAGCAGCTT+TGG | 0.398995 | 2_3:-51326170 | None:intergenic |
| TAAATAACCACAGGCTCGTT+TGG | 0.405456 | 2_3:-51326037 | None:intergenic |
| TCTAGAAACCTAGCGGGGTT+AGG | 0.418338 | 2_3:+51328886 | Msa0297610:three_prime_UTR |
| GTGAGTATCCTAAGGATGTT+AGG | 0.420054 | 2_3:+51328552 | Msa0297610:three_prime_UTR |
| GTGGTTATTTACCTCAAAGT+TGG | 0.423882 | 2_3:+51326049 | Msa0297610:CDS |
| GATGCCAAAACTCCCAAGTC+TGG | 0.432291 | 2_3:+51328267 | Msa0297610:CDS |
| TTGGTCTCACCAGTCTTCTC+AGG | 0.439494 | 2_3:-51327550 | None:intergenic |
| AGAGAGTAATGAGTATGTTA+GGG | 0.441983 | 2_3:-51325510 | None:intergenic |
| AGCTGCTATTCACATTTCTC+AGG | 0.449259 | 2_3:+51325895 | Msa0297610:CDS |
| TGTGATTATATAGTGATTCA+GGG | 0.452751 | 2_3:-51325440 | None:intergenic |
| AATTGTAGTTTGTCGACAAA+TGG | 0.453497 | 2_3:+51328502 | Msa0297610:three_prime_UTR |
| TTTGTGGTGATGACATGTTT+TGG | 0.453561 | 2_3:+51328617 | Msa0297610:three_prime_UTR |
| TCTTGATATTGTCCTTGAAA+AGG | 0.456315 | 2_3:+51326126 | Msa0297610:CDS |
| TTGTTAGATGGTAAGAAAGC+TGG | 0.456417 | 2_3:+51328195 | Msa0297610:intron |
| TTAGGTGCTGAGGTTAAGGT+TGG | 0.459431 | 2_3:+51325836 | Msa0297610:intron |
| GGAAGTGTGTGTGGCGTAAG+AGG | 0.464861 | 2_3:-51325483 | None:intergenic |
| GTGTGTGGCGTAAGAGGAAG+AGG | 0.467745 | 2_3:-51325477 | None:intergenic |
| AGAGAGTCCTCCTCCAGACT+TGG | 0.471298 | 2_3:-51328280 | None:intergenic |
| TTTCCACCTTTCTTAGGGTG+AGG | 0.472414 | 2_3:-51328231 | None:intergenic |
| AGCGGGGTTAGGAGTAAATT+GGG | 0.478917 | 2_3:+51328897 | Msa0297610:three_prime_UTR |
| GTTTCTAGATACTCTCTAAA+GGG | 0.492189 | 2_3:-51328872 | None:intergenic |
| ACTTCACTTAGCAGCATGCT+TGG | 0.492494 | 2_3:-51328472 | None:intergenic |
| GGTTTCTAGATACTCTCTAA+AGG | 0.493068 | 2_3:-51328873 | None:intergenic |
| CTCTCTCTCACTGTTTCCAA+TGG | 0.495005 | 2_3:+51325527 | Msa0297610:exon |
| TCTGCTCTGTGTTAATCAAT+GGG | 0.495154 | 2_3:-51326750 | None:intergenic |
| GTAAGAGGAAGAGGAAATGA+AGG | 0.513748 | 2_3:-51325468 | None:intergenic |
| GACAGACACCTAACATCCTT+AGG | 0.519803 | 2_3:-51328560 | None:intergenic |
| AATTTACTCCTAACCCCGCT+AGG | 0.523549 | 2_3:-51328894 | None:intergenic |
| GGAAGAGACTCCTGTGAAGA+AGG | 0.527324 | 2_3:+51327360 | Msa0297610:CDS |
| TGTGCCATTACCTTCTTCAC+AGG | 0.535491 | 2_3:-51327370 | None:intergenic |
| CAGCTGCATCAAGGTCATAT+GGG | 0.546249 | 2_3:-51325877 | None:intergenic |
| TGAGAGTGATGAGGATGATG+AGG | 0.559141 | 2_3:+51327339 | Msa0297610:CDS |
| GAGAGTCCTCCTCCAGACTT+GGG | 0.565423 | 2_3:-51328279 | None:intergenic |
| AGAGTATCTAGAAACCTAGC+GGG | 0.567677 | 2_3:+51328880 | Msa0297610:three_prime_UTR |
| AATGCTACTCCTGAGAAGAC+TGG | 0.569825 | 2_3:+51327541 | Msa0297610:CDS |
| GCAACTCCTCACCCTAAGAA+AGG | 0.575686 | 2_3:+51328225 | Msa0297610:CDS |
| GGTTGTTGATCCAAAGGATG+AGG | 0.576616 | 2_3:+51326954 | Msa0297610:CDS |
| GAGTTACCCCAAAACTCCAT+TGG | 0.578782 | 2_3:-51325543 | None:intergenic |
| CGTGAAGGTTGTTGATCCAA+AGG | 0.578956 | 2_3:+51326948 | Msa0297610:CDS |
| GTTATTGTATAGGTTGCACT+TGG | 0.583377 | 2_3:+51325995 | Msa0297610:intron |
| AAAACTCCCAAGTCTGGAGG+AGG | 0.583660 | 2_3:+51328273 | Msa0297610:CDS |
| TGTGAATAGCAGCTGCATCA+AGG | 0.595728 | 2_3:-51325886 | None:intergenic |
| GTAGTATGGTGAGTATCCTA+AGG | 0.595850 | 2_3:+51328544 | Msa0297610:three_prime_UTR |
| TAAGAGGAAGAGGAAATGAA+GGG | 0.600160 | 2_3:-51325467 | None:intergenic |
| TTGATTAACACAGAGCAGAA+TGG | 0.601793 | 2_3:+51326754 | Msa0297610:CDS |
| GGTTATTTACCTCAAAGTTG+GGG | 0.606552 | 2_3:+51326051 | Msa0297610:CDS |
| GATTTCTGAATTAGGTGCTG+AGG | 0.607620 | 2_3:+51325826 | Msa0297610:intron |
| AAAACCAGAACCAAAAGCAG+AGG | 0.625041 | 2_3:+51326870 | Msa0297610:CDS |
| TGGACTGCAACAACATAGCA+AGG | 0.629185 | 2_3:+51328449 | Msa0297610:CDS |
| AATAGCCTATATAGCTCGAG+TGG | 0.629986 | 2_3:-51328732 | None:intergenic |
| ACTCCTCACCCTAAGAAAGG+TGG | 0.633029 | 2_3:+51328228 | Msa0297610:CDS |
| AAATGGAAGCTCTGATGATG+AGG | 0.649458 | 2_3:+51327020 | Msa0297610:CDS |
| AAGAGGAAGAGGAAATGAAG+GGG | 0.652096 | 2_3:-51325466 | None:intergenic |
| GCCAAAACTCCCAAGTCTGG+AGG | 0.652249 | 2_3:+51328270 | Msa0297610:CDS |
| ACTTTGAGGTAAATAACCAC+AGG | 0.655718 | 2_3:-51326046 | None:intergenic |
| AGACAAACCAAACGAGCCTG+TGG | 0.660313 | 2_3:+51326030 | Msa0297610:CDS |
| ACAATATCAAGAGAAATCTG+AGG | 0.664546 | 2_3:-51326115 | None:intergenic |
| AGATGATGATGAGAGTGATG+AGG | 0.674103 | 2_3:+51327330 | Msa0297610:CDS |
| TGCACCTGTTAAACACGTGA+AGG | 0.692630 | 2_3:+51326933 | Msa0297610:CDS |
| GAGAGTATCTAGAAACCTAG+CGG | 0.695129 | 2_3:+51328879 | Msa0297610:three_prime_UTR |
| GAGTATCTAGAAACCTAGCG+GGG | 0.735925 | 2_3:+51328881 | Msa0297610:three_prime_UTR |
| AGGTTGACCAGGGAAAGAAG+AGG | 0.740019 | 2_3:+51327470 | Msa0297610:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATAGTTTACATTTTATAT+TGG | + | chr2_3:51326545-51326564 | Msa0297610:intron | 10.0% |
| !!! | ATATATTTATTACTTTTAGA+TGG | + | chr2_3:51328345-51328364 | Msa0297610:intron | 10.0% |
| !!! | TATATTTATTACTTTTAGAT+GGG | + | chr2_3:51328346-51328365 | Msa0297610:intron | 10.0% |
| !!! | GAATTATATTATTTTTTAAG+AGG | + | chr2_3:51328757-51328776 | Msa0297610:three_prime_UTR | 10.0% |
| !!! | ACATTATATTATTTTTTAAG+AGG | + | chr2_3:51328825-51328844 | Msa0297610:intron | 10.0% |
| !! | AACTATATAATAACAAATCA+AGG | - | chr2_3:51326232-51326251 | None:intergenic | 15.0% |
| !!! | TTTTAGATGATATTTTTCTA+AGG | + | chr2_3:51326261-51326280 | Msa0297610:intron | 15.0% |
| !! | TATAATTATTATGGTTACTA+CGG | + | chr2_3:51327418-51327437 | Msa0297610:intron | 15.0% |
| !!! | ATTTTGCGATAAATATATAT+TGG | + | chr2_3:51327583-51327602 | Msa0297610:intron | 15.0% |
| !! | TTAAATTGTGTTAGATATTA+AGG | + | chr2_3:51328017-51328036 | Msa0297610:intron | 15.0% |
| !! | AAAGGATATATATCTATATA+TGG | - | chr2_3:51328144-51328163 | None:intergenic | 15.0% |
| !! | AAAGTAATAAATATATGCTT+CGG | - | chr2_3:51328341-51328360 | None:intergenic | 15.0% |
| !!! | TGATTTTTTTTTTGTTGGTT+GGG | + | chr2_3:51326796-51326815 | Msa0297610:intron | 20.0% |
| !!! | AAATAACCATTGTTCTTTTT+AGG | + | chr2_3:51326847-51326866 | Msa0297610:intron | 20.0% |
| !!! | TTAATCAATGTTTTGTTTAG+TGG | + | chr2_3:51327046-51327065 | Msa0297610:intron | 20.0% |
| !!! | TTTATGTTGATAATTGTAGA+TGG | + | chr2_3:51327291-51327310 | Msa0297610:intron | 20.0% |
| !!! | TTTTTTTTTGCTTGTTGATT+CGG | + | chr2_3:51327614-51327633 | Msa0297610:intron | 20.0% |
| !! | CAAACAATGTTTCAATTTAA+GGG | - | chr2_3:51328068-51328087 | None:intergenic | 20.0% |
| !! | TCAAACAATGTTTCAATTTA+AGG | - | chr2_3:51328069-51328088 | None:intergenic | 20.0% |
| !! | AAAAATTTAAACGCGAATTA+AGG | - | chr2_3:51328177-51328196 | None:intergenic | 20.0% |
| !! | AAGTAATAAATATATGCTTC+GGG | - | chr2_3:51328340-51328359 | None:intergenic | 20.0% |
| !!! | ATTGTTTTTCATATGTAGTA+TGG | + | chr2_3:51328530-51328549 | Msa0297610:three_prime_UTR | 20.0% |
| ! | TGTGATTATATAGTGATTCA+GGG | - | chr2_3:51325443-51325462 | None:intergenic | 25.0% |
| ! | TTGTGATTATATAGTGATTC+AGG | - | chr2_3:51325444-51325463 | None:intergenic | 25.0% |
| ! | ATCAAAAATCAAGAGTAGTT+CGG | - | chr2_3:51325688-51325707 | None:intergenic | 25.0% |
| !!! | TATACGTTGATTTCTGAATT+AGG | + | chr2_3:51325818-51325837 | Msa0297610:intron | 25.0% |
| ! | TTGTAGGTTTACTAAATTTC+TGG | + | chr2_3:51325969-51325988 | Msa0297610:intron | 25.0% |
| !!! | TTTCTGGTTTGTTATTGTAT+AGG | + | chr2_3:51325985-51326004 | Msa0297610:intron | 25.0% |
| ! | ATTTAGATAACAGATCTGTA+AGG | - | chr2_3:51326510-51326529 | None:intergenic | 25.0% |
| !!! | TTGTCATGCAATTGTTTTTA+AGG | + | chr2_3:51326650-51326669 | Msa0297610:intron | 25.0% |
| ! | AAAAAAAAAATCAGACCAAG+AGG | - | chr2_3:51326789-51326808 | None:intergenic | 25.0% |
| !!! | TGGTCTGATTTTTTTTTTGT+TGG | + | chr2_3:51326791-51326810 | Msa0297610:intron | 25.0% |
| !!! | CTGATTTTTTTTTTGTTGGT+TGG | + | chr2_3:51326795-51326814 | Msa0297610:intron | 25.0% |
| ! | TTTCAACATTGTGTATGTAT+TGG | - | chr2_3:51327142-51327161 | None:intergenic | 25.0% |
| !! | ACATTTGTTAAATGTGCTAT+TGG | + | chr2_3:51327168-51327187 | Msa0297610:intron | 25.0% |
| !! | CATTTGTTAAATGTGCTATT+GGG | + | chr2_3:51327169-51327188 | Msa0297610:intron | 25.0% |
| ! | TTATTTCGTGTTCTCAATTT+AGG | + | chr2_3:51327195-51327214 | Msa0297610:intron | 25.0% |
| ! | TATTTCGTGTTCTCAATTTA+GGG | + | chr2_3:51327196-51327215 | Msa0297610:intron | 25.0% |
| !!! | ATAATCGTCTTTTTGTTTGA+AGG | + | chr2_3:51327450-51327469 | Msa0297610:intron | 25.0% |
| !!! | AGTAGCATTTTTTGATTTCT+TGG | - | chr2_3:51327530-51327549 | None:intergenic | 25.0% |
| ! | TCGCAAAATATATTACAACT+TGG | - | chr2_3:51327572-51327591 | None:intergenic | 25.0% |
| ! | ACAATTTAACAACAGTTAAC+TGG | - | chr2_3:51327749-51327768 | None:intergenic | 25.0% |
| !! | GCGTTTAAATTTTTGTTAGA+TGG | + | chr2_3:51328183-51328202 | Msa0297610:intron | 25.0% |
| ! | AATCTAAACGCAATGAATTT+AGG | - | chr2_3:51328675-51328694 | None:intergenic | 25.0% |
| ! | TTAGCAACACTTCAAAAAAA+TGG | - | chr2_3:51328932-51328951 | None:intergenic | 25.0% |
| TATAGTGATTCAGGGAAAAA+GGG | - | chr2_3:51325435-51325454 | None:intergenic | 30.0% | |
| ATATAGTGATTCAGGGAAAA+AGG | - | chr2_3:51325436-51325455 | None:intergenic | 30.0% | |
| ! | TAATGAGTATGTTAGGGTTT+TGG | - | chr2_3:51325507-51325526 | None:intergenic | 30.0% |
| AGAGAGTAATGAGTATGTTA+GGG | - | chr2_3:51325513-51325532 | None:intergenic | 30.0% | |
| AACTTGTATTCACGTGTATT+AGG | + | chr2_3:51325774-51325793 | Msa0297610:intron | 30.0% | |
| ACTTGTATTCACGTGTATTA+GGG | + | chr2_3:51325775-51325794 | Msa0297610:intron | 30.0% | |
| TATTCACATTTCTCAGGTTA+GGG | + | chr2_3:51325901-51325920 | Msa0297610:intron | 30.0% | |
| !! | GTTCTATGTTGTGTTTTTGT+AGG | + | chr2_3:51325953-51325972 | Msa0297610:intron | 30.0% |
| TGGTTATTTACCTCAAAGTT+GGG | + | chr2_3:51326050-51326069 | Msa0297610:CDS | 30.0% | |
| ACAATATCAAGAGAAATCTG+AGG | - | chr2_3:51326118-51326137 | None:intergenic | 30.0% | |
| TCTTGATATTGTCCTTGAAA+AGG | + | chr2_3:51326126-51326145 | Msa0297610:CDS | 30.0% | |
| GATGACAAATAGACTAATCT+GGG | - | chr2_3:51326338-51326357 | None:intergenic | 30.0% | |
| ATGATGTCAATATACACGTT+AGG | - | chr2_3:51326379-51326398 | None:intergenic | 30.0% | |
| CCAAAACACATCAATAGTTA+AGG | - | chr2_3:51326587-51326606 | None:intergenic | 30.0% | |
| ! | CCTTAACTATTGATGTGTTT+TGG | + | chr2_3:51326584-51326603 | Msa0297610:intron | 30.0% |
| ATTGCATGACAAATTTCAGA+GGG | - | chr2_3:51326642-51326661 | None:intergenic | 30.0% | |
| AATTGCATGACAAATTTCAG+AGG | - | chr2_3:51326643-51326662 | None:intergenic | 30.0% | |
| AGGTTAGATTAAGATTGTGT+TGG | + | chr2_3:51326670-51326689 | Msa0297610:intron | 30.0% | |
| ! | GGTTTTCCTAAAAAGAACAA+TGG | - | chr2_3:51326856-51326875 | None:intergenic | 30.0% |
| GAAAGTTTCTGAACCTAAAA+AGG | + | chr2_3:51326894-51326913 | Msa0297610:CDS | 30.0% | |
| ! | GATGAATCTGATGATGAAAA+TGG | + | chr2_3:51327003-51327022 | Msa0297610:CDS | 30.0% |
| !! | TATAAGTTGTCCATTTTTGC+TGG | + | chr2_3:51327077-51327096 | Msa0297610:intron | 30.0% |
| !!! | GTTTTTGAAGCAGATTCATT+GGG | - | chr2_3:51327496-51327515 | None:intergenic | 30.0% |
| !!! | AGTTTTTGAAGCAGATTCAT+TGG | - | chr2_3:51327497-51327516 | None:intergenic | 30.0% |
| ! | TTTGATTTCTTGGTAGAAAC+TGG | - | chr2_3:51327520-51327539 | None:intergenic | 30.0% |
| ! | TAGTTCTTGCATTTTGTTGA+TGG | + | chr2_3:51327666-51327685 | Msa0297610:intron | 30.0% |
| AATGTTTCAATTTAAGGGTG+GGG | - | chr2_3:51328063-51328082 | None:intergenic | 30.0% | |
| CAATGTTTCAATTTAAGGGT+GGG | - | chr2_3:51328064-51328083 | None:intergenic | 30.0% | |
| ACAATGTTTCAATTTAAGGG+TGG | - | chr2_3:51328065-51328084 | None:intergenic | 30.0% | |
| AATTAAGGATGTGCAACAAA+AGG | - | chr2_3:51328162-51328181 | None:intergenic | 30.0% | |
| !! | GGTTGTGATTGATTTTTAGA+TGG | + | chr2_3:51328367-51328386 | Msa0297610:intron | 30.0% |
| !! | TTTTTGTTGTCTTCATTACC+AGG | + | chr2_3:51328409-51328428 | Msa0297610:intron | 30.0% |
| ! | AATTGTAGTTTGTCGACAAA+TGG | + | chr2_3:51328502-51328521 | Msa0297610:three_prime_UTR | 30.0% |
| GTTCACTAGATCAAAAATCA+AGG | - | chr2_3:51328585-51328604 | None:intergenic | 30.0% | |
| ! | TTTTTGATCTAGTGAACATG+AGG | + | chr2_3:51328588-51328607 | Msa0297610:three_prime_UTR | 30.0% |
| ! | TTTTGATCTAGTGAACATGA+GGG | + | chr2_3:51328589-51328608 | Msa0297610:three_prime_UTR | 30.0% |
| ! | GTTTCTAGATACTCTCTAAA+GGG | - | chr2_3:51328807-51328826 | None:intergenic | 30.0% |
| !! | TGTTTCTAGATACTCTCTAA+AGG | - | chr2_3:51328808-51328827 | None:intergenic | 30.0% |
| ! | GTTTCTAGATACTCTCTAAA+GGG | - | chr2_3:51328807-51328826 | None:intergenic | 30.0% |
| ! | AAGGGTTTTTGCAAAAGCTA+GGG | - | chr2_3:51325417-51325436 | None:intergenic | 35.0% |
| ! | AAAGGGTTTTTGCAAAAGCT+AGG | - | chr2_3:51325418-51325437 | None:intergenic | 35.0% |
| TAAGAGGAAGAGGAAATGAA+GGG | - | chr2_3:51325470-51325489 | None:intergenic | 35.0% | |
| GAGAGAGTAATGAGTATGTT+AGG | - | chr2_3:51325514-51325533 | None:intergenic | 35.0% | |
| ! | ACTGTTTCCAATGGAGTTTT+GGG | + | chr2_3:51325536-51325555 | Msa0297610:exon | 35.0% |
| GAAGAAAGGTAGACAATGAA+CGG | - | chr2_3:51325577-51325596 | None:intergenic | 35.0% | |
| CTATTCACATTTCTCAGGTT+AGG | + | chr2_3:51325900-51325919 | Msa0297610:intron | 35.0% | |
| GTTATTGTATAGGTTGCACT+TGG | + | chr2_3:51325995-51326014 | Msa0297610:intron | 35.0% | |
| !! | ACTTTGAGGTAAATAACCAC+AGG | - | chr2_3:51326049-51326068 | None:intergenic | 35.0% |
| GTGGTTATTTACCTCAAAGT+TGG | + | chr2_3:51326049-51326068 | Msa0297610:CDS | 35.0% | |
| GGTTATTTACCTCAAAGTTG+GGG | + | chr2_3:51326051-51326070 | Msa0297610:CDS | 35.0% | |
| ! | AGGAATTTTGTCCCTGTTTA+GGG | - | chr2_3:51326098-51326117 | None:intergenic | 35.0% |
| ! | ATAGCTCAAACTCCTTTTCA+AGG | - | chr2_3:51326141-51326160 | None:intergenic | 35.0% |
| GGATGACAAATAGACTAATC+TGG | - | chr2_3:51326339-51326358 | None:intergenic | 35.0% | |
| TAGGCTATTATTGCAACACT+AGG | - | chr2_3:51326360-51326379 | None:intergenic | 35.0% | |
| !! | GTTTAGTTTGTTGCTATCCT+AGG | + | chr2_3:51326482-51326501 | Msa0297610:intron | 35.0% |
| TCTGCTCTGTGTTAATCAAT+GGG | - | chr2_3:51326753-51326772 | None:intergenic | 35.0% | |
| TTCTGCTCTGTGTTAATCAA+TGG | - | chr2_3:51326754-51326773 | None:intergenic | 35.0% | |
| TTGATTAACACAGAGCAGAA+TGG | + | chr2_3:51326754-51326773 | Msa0297610:CDS | 35.0% | |
| GACATCATTACCAGCAAAAA+TGG | - | chr2_3:51327090-51327109 | None:intergenic | 35.0% | |
| ACATGCATAATCAAGACTGA+AGG | - | chr2_3:51327112-51327131 | None:intergenic | 35.0% | |
| AATAAATGTTGACCTCAGAC+AGG | - | chr2_3:51327265-51327284 | None:intergenic | 35.0% | |
| !! | TTTTTGTTTGAAGGTTGACC+AGG | + | chr2_3:51327459-51327478 | Msa0297610:intron | 35.0% |
| !! | TTTTGTTTGAAGGTTGACCA+GGG | + | chr2_3:51327460-51327479 | Msa0297610:intron | 35.0% |
| !! | TTGTTGATTCGGTGTTAGAT+CGG | + | chr2_3:51327625-51327644 | Msa0297610:intron | 35.0% |
| AATGCAAGAACTAGTGCAAA+TGG | - | chr2_3:51327659-51327678 | None:intergenic | 35.0% | |
| !! | TGCATTTTGTTGATGGATCA+TGG | + | chr2_3:51327673-51327692 | Msa0297610:intron | 35.0% |
| GTCAATGCTGAAATTGTAGT+TGG | + | chr2_3:51327790-51327809 | Msa0297610:intron | 35.0% | |
| !! | ATTGTAGTTGGTTTGCATCA+TGG | + | chr2_3:51327802-51327821 | Msa0297610:intron | 35.0% |
| !! | AATGTAGCTTGTTTGCATCA+AGG | + | chr2_3:51327926-51327945 | Msa0297610:intron | 35.0% |
| TTGTTAGATGGTAAGAAAGC+TGG | + | chr2_3:51328195-51328214 | Msa0297610:intron | 35.0% | |
| !! | TTTGTGGTGATGACATGTTT+TGG | + | chr2_3:51328617-51328636 | Msa0297610:three_prime_UTR | 35.0% |
| ! | GGTTTCTAGATACTCTCTAA+AGG | - | chr2_3:51328876-51328895 | None:intergenic | 35.0% |
| ! | TGCAAAAGCTAGGGTTTTTG+CGG | - | chr2_3:51325408-51325427 | None:intergenic | 40.0% |
| AAGAGGAAGAGGAAATGAAG+GGG | - | chr2_3:51325469-51325488 | None:intergenic | 40.0% | |
| GTAAGAGGAAGAGGAAATGA+AGG | - | chr2_3:51325471-51325490 | None:intergenic | 40.0% | |
| ! | CACTGTTTCCAATGGAGTTT+TGG | + | chr2_3:51325535-51325554 | Msa0297610:exon | 40.0% |
| ! | CTGTTTCCAATGGAGTTTTG+GGG | + | chr2_3:51325537-51325556 | Msa0297610:exon | 40.0% |
| CATCGTTATTCAGCGAAGAA+AGG | - | chr2_3:51325591-51325610 | None:intergenic | 40.0% | |
| ! | GATTTCTGAATTAGGTGCTG+AGG | + | chr2_3:51325826-51325845 | Msa0297610:intron | 40.0% |
| !! | TGAATTAGGTGCTGAGGTTA+AGG | + | chr2_3:51325832-51325851 | Msa0297610:intron | 40.0% |
| AGCTGCTATTCACATTTCTC+AGG | + | chr2_3:51325895-51325914 | Msa0297610:CDS | 40.0% | |
| TAAATAACCACAGGCTCGTT+TGG | - | chr2_3:51326040-51326059 | None:intergenic | 40.0% | |
| !! | TGGGGAACAAAAGCTTGTTT+TGG | + | chr2_3:51326069-51326088 | Msa0297610:CDS | 40.0% |
| !! | GGGGAACAAAAGCTTGTTTT+GGG | + | chr2_3:51326070-51326089 | Msa0297610:CDS | 40.0% |
| !!! | TTGTTTTGGGAACCCTAAAC+AGG | + | chr2_3:51326083-51326102 | Msa0297610:CDS | 40.0% |
| !!! | TGTTTTGGGAACCCTAAACA+GGG | + | chr2_3:51326084-51326103 | Msa0297610:CDS | 40.0% |
| ! | GAGGAATTTTGTCCCTGTTT+AGG | - | chr2_3:51326099-51326118 | None:intergenic | 40.0% |
| GAAATGAACACTAGCAGCTT+TGG | - | chr2_3:51326173-51326192 | None:intergenic | 40.0% | |
| TAACACAGAGCAGAATGGTA+TGG | + | chr2_3:51326759-51326778 | Msa0297610:intron | 40.0% | |
| AACACAGAGCAGAATGGTAT+GGG | + | chr2_3:51326760-51326779 | Msa0297610:intron | 40.0% | |
| AAAACCAGAACCAAAAGCAG+AGG | + | chr2_3:51326870-51326889 | Msa0297610:CDS | 40.0% | |
| ! | GAAACTTTCTCCTCTGCTTT+TGG | - | chr2_3:51326883-51326902 | None:intergenic | 40.0% |
| ! | TTCTTGGCATCAGCCTTTTT+AGG | - | chr2_3:51326910-51326929 | None:intergenic | 40.0% |
| TTTAACAGGTGCAGCATTCT+TGG | - | chr2_3:51326926-51326945 | None:intergenic | 40.0% | |
| ACAACCTTCACGTGTTTAAC+AGG | - | chr2_3:51326940-51326959 | None:intergenic | 40.0% | |
| TCTTCATCTTCCTCATCCTT+TGG | - | chr2_3:51326967-51326986 | None:intergenic | 40.0% | |
| ! | AAATGGAAGCTCTGATGATG+AGG | + | chr2_3:51327020-51327039 | Msa0297610:CDS | 40.0% |
| GTCTTGATTATGCATGTCTG+AGG | + | chr2_3:51327115-51327134 | Msa0297610:intron | 40.0% | |
| ! | AGATGATGATGAGAGTGATG+AGG | + | chr2_3:51327330-51327349 | Msa0297610:CDS | 40.0% |
| GTCAGACATGCTGAAATTTG+AGG | + | chr2_3:51328098-51328117 | Msa0297610:intron | 40.0% | |
| GAGTCTTTCCACCTTTCTTA+GGG | - | chr2_3:51328239-51328258 | None:intergenic | 40.0% | |
| AGTTTCAGAGTTGAATGTCC+TGG | - | chr2_3:51328430-51328449 | None:intergenic | 40.0% | |
| !! | AGGACATTCAACTCTGAAAC+TGG | + | chr2_3:51328429-51328448 | Msa0297610:intron | 40.0% |
| GTAGTATGGTGAGTATCCTA+AGG | + | chr2_3:51328544-51328563 | Msa0297610:three_prime_UTR | 40.0% | |
| GTGAGTATCCTAAGGATGTT+AGG | + | chr2_3:51328552-51328571 | Msa0297610:three_prime_UTR | 40.0% | |
| ! | GAACATGAGGGAAAGTTTTG+TGG | + | chr2_3:51328601-51328620 | Msa0297610:three_prime_UTR | 40.0% |
| ! | TGGAAGCTGTTTGACTTTGA+TGG | + | chr2_3:51328637-51328656 | Msa0297610:three_prime_UTR | 40.0% |
| TTATGCCACTCGAGCTATAT+AGG | + | chr2_3:51328727-51328746 | Msa0297610:three_prime_UTR | 40.0% | |
| AATAGCCTATATAGCTCGAG+TGG | - | chr2_3:51328735-51328754 | None:intergenic | 40.0% | |
| !! | GAGAGTATCTAGAAACCTAG+CGG | + | chr2_3:51328879-51328898 | Msa0297610:three_prime_UTR | 40.0% |
| ! | AGAGTATCTAGAAACCTAGC+GGG | + | chr2_3:51328880-51328899 | Msa0297610:three_prime_UTR | 40.0% |
| !!! | TAGGGTTTTGGAAGTGTGTG+TGG | - | chr2_3:51325495-51325514 | None:intergenic | 45.0% |
| CTCTCTCTCACTGTTTCCAA+TGG | + | chr2_3:51325527-51325546 | Msa0297610:exon | 45.0% | |
| GAGTTACCCCAAAACTCCAT+TGG | - | chr2_3:51325546-51325565 | None:intergenic | 45.0% | |
| !! | TTAGGTGCTGAGGTTAAGGT+TGG | + | chr2_3:51325836-51325855 | Msa0297610:intron | 45.0% |
| CAGCTGCATCAAGGTCATAT+GGG | - | chr2_3:51325880-51325899 | None:intergenic | 45.0% | |
| TGTGAATAGCAGCTGCATCA+AGG | - | chr2_3:51325889-51325908 | None:intergenic | 45.0% | |
| ! | GCTTTTGTTCCCCAACTTTG+AGG | - | chr2_3:51326063-51326082 | None:intergenic | 45.0% |
| GCTGCTAGTGTTCATTTCTG+TGG | + | chr2_3:51326175-51326194 | Msa0297610:intron | 45.0% | |
| ! | AACAGATCTGTAAGGCACCT+AGG | - | chr2_3:51326502-51326521 | None:intergenic | 45.0% |
| GAATGGTATGGGTTTCCTCT+TGG | + | chr2_3:51326771-51326790 | Msa0297610:intron | 45.0% | |
| !!! | TTCTCCTCTGCTTTTGGTTC+TGG | - | chr2_3:51326877-51326896 | None:intergenic | 45.0% |
| TGCACCTGTTAAACACGTGA+AGG | + | chr2_3:51326933-51326952 | Msa0297610:CDS | 45.0% | |
| CGTGAAGGTTGTTGATCCAA+AGG | + | chr2_3:51326948-51326967 | Msa0297610:CDS | 45.0% | |
| GGTTGTTGATCCAAAGGATG+AGG | + | chr2_3:51326954-51326973 | Msa0297610:CDS | 45.0% | |
| ! | GTCCTTTTTATGCCTGTCTG+AGG | + | chr2_3:51327250-51327269 | Msa0297610:intron | 45.0% |
| GACCTCAGACAGGCATAAAA+AGG | - | chr2_3:51327255-51327274 | None:intergenic | 45.0% | |
| TGAGAGTGATGAGGATGATG+AGG | + | chr2_3:51327339-51327358 | Msa0297610:CDS | 45.0% | |
| GACTCCTGTGAAGAAGGTAA+TGG | + | chr2_3:51327366-51327385 | Msa0297610:intron | 45.0% | |
| ! | TGTGCCATTACCTTCTTCAC+AGG | - | chr2_3:51327373-51327392 | None:intergenic | 45.0% |
| AATGCTACTCCTGAGAAGAC+TGG | + | chr2_3:51327541-51327560 | Msa0297610:CDS | 45.0% | |
| TTTCCACCTTTCTTAGGGTG+AGG | - | chr2_3:51328234-51328253 | None:intergenic | 45.0% | |
| GGAGTCTTTCCACCTTTCTT+AGG | - | chr2_3:51328240-51328259 | None:intergenic | 45.0% | |
| !! | GGAGTTTTGGCATCACTGTT+AGG | - | chr2_3:51328261-51328280 | None:intergenic | 45.0% |
| TGGACTGCAACAACATAGCA+AGG | + | chr2_3:51328449-51328468 | Msa0297610:CDS | 45.0% | |
| ACTTCACTTAGCAGCATGCT+TGG | - | chr2_3:51328475-51328494 | None:intergenic | 45.0% | |
| GACAGACACCTAACATCCTT+AGG | - | chr2_3:51328563-51328582 | None:intergenic | 45.0% | |
| GAGTATCTAGAAACCTAGCG+GGG | + | chr2_3:51328881-51328900 | Msa0297610:three_prime_UTR | 45.0% | |
| AATTTACTCCTAACCCCGCT+AGG | - | chr2_3:51328897-51328916 | None:intergenic | 45.0% | |
| TAGCGGGGTTAGGAGTAAAT+TGG | + | chr2_3:51328896-51328915 | Msa0297610:three_prime_UTR | 45.0% | |
| AGCGGGGTTAGGAGTAAATT+GGG | + | chr2_3:51328897-51328916 | Msa0297610:three_prime_UTR | 45.0% | |
| !!! | TTTATTTGTTATAATTATTA+TGG | + | chr2_3:51327409-51327428 | Msa0297610:intron | 5.0% |
| GCAGCTGCATCAAGGTCATA+TGG | - | chr2_3:51325881-51325900 | None:intergenic | 50.0% | |
| AGACAAACCAAACGAGCCTG+TGG | + | chr2_3:51326030-51326049 | Msa0297610:CDS | 50.0% | |
| !!! | TGTTTTGGCTTGCACGAGTG+AGG | + | chr2_3:51326599-51326618 | Msa0297610:intron | 50.0% |
| ACGAGTGAGGAAGGTGAAAC+TGG | + | chr2_3:51326612-51326631 | Msa0297610:intron | 50.0% | |
| GGAAGAGACTCCTGTGAAGA+AGG | + | chr2_3:51327360-51327379 | Msa0297610:CDS | 50.0% | |
| AGGTTGACCAGGGAAAGAAG+AGG | + | chr2_3:51327470-51327489 | Msa0297610:intron | 50.0% | |
| TTGGTCTCACCAGTCTTCTC+AGG | - | chr2_3:51327553-51327572 | None:intergenic | 50.0% | |
| GCAACTCCTCACCCTAAGAA+AGG | + | chr2_3:51328225-51328244 | Msa0297610:CDS | 50.0% | |
| ACTCCTCACCCTAAGAAAGG+TGG | + | chr2_3:51328228-51328247 | Msa0297610:CDS | 50.0% | |
| GATGCCAAAACTCCCAAGTC+TGG | + | chr2_3:51328267-51328286 | Msa0297610:CDS | 50.0% | |
| ! | TCCTCCAGACTTGGGAGTTT+TGG | - | chr2_3:51328274-51328293 | None:intergenic | 50.0% |
| AAAACTCCCAAGTCTGGAGG+AGG | + | chr2_3:51328273-51328292 | Msa0297610:CDS | 50.0% | |
| TCTAGAAACCTAGCGGGGTT+AGG | + | chr2_3:51328886-51328905 | Msa0297610:three_prime_UTR | 50.0% | |
| GTGTGTGGCGTAAGAGGAAG+AGG | - | chr2_3:51325480-51325499 | None:intergenic | 55.0% | |
| ! | GGAAGTGTGTGTGGCGTAAG+AGG | - | chr2_3:51325486-51325505 | None:intergenic | 55.0% |
| !! | TTGGCTTGCACGAGTGAGGA+AGG | + | chr2_3:51326603-51326622 | Msa0297610:intron | 55.0% |
| CATTGGGCCTCTTCTTTCCC+TGG | - | chr2_3:51327480-51327499 | None:intergenic | 55.0% | |
| GCCAAAACTCCCAAGTCTGG+AGG | + | chr2_3:51328270-51328289 | Msa0297610:CDS | 55.0% | |
| GAGAGTCCTCCTCCAGACTT+GGG | - | chr2_3:51328282-51328301 | None:intergenic | 55.0% | |
| AGAGAGTCCTCCTCCAGACT+TGG | - | chr2_3:51328283-51328302 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 51325399 | 51328961 | 51325399 | ID=Msa0297610;Name=Msa0297610 |
| chr2_3 | mRNA | 51325399 | 51328961 | 51325399 | ID=Msa0297610-mRNA-1;Parent=Msa0297610;Name=Msa0297610-mRNA-1;_AED=0.11;_eAED=0.11;_QI=147|0.88|0.9|1|0.77|0.7|10|402|274 |
| chr2_3 | exon | 51325399 | 51325558 | 51325399 | ID=Msa0297610-mRNA-1:exon:16310;Parent=Msa0297610-mRNA-1 |
| chr2_3 | exon | 51325840 | 51325916 | 51325840 | ID=Msa0297610-mRNA-1:exon:16311;Parent=Msa0297610-mRNA-1 |
| chr2_3 | exon | 51326007 | 51326181 | 51326007 | ID=Msa0297610-mRNA-1:exon:16312;Parent=Msa0297610-mRNA-1 |
| chr2_3 | exon | 51326731 | 51326775 | 51326731 | ID=Msa0297610-mRNA-1:exon:16313;Parent=Msa0297610-mRNA-1 |
| chr2_3 | exon | 51326869 | 51327041 | 51326869 | ID=Msa0297610-mRNA-1:exon:16314;Parent=Msa0297610-mRNA-1 |
| chr2_3 | exon | 51327310 | 51327381 | 51327310 | ID=Msa0297610-mRNA-1:exon:16315;Parent=Msa0297610-mRNA-1 |
| chr2_3 | exon | 51327472 | 51327562 | 51327472 | ID=Msa0297610-mRNA-1:exon:16316;Parent=Msa0297610-mRNA-1 |
| chr2_3 | exon | 51328202 | 51328319 | 51328202 | ID=Msa0297610-mRNA-1:exon:16317;Parent=Msa0297610-mRNA-1 |
| chr2_3 | exon | 51328431 | 51328778 | 51328431 | ID=Msa0297610-mRNA-1:exon:16318;Parent=Msa0297610-mRNA-1 |
| chr2_3 | exon | 51328847 | 51328961 | 51328847 | ID=Msa0297610-mRNA-1:exon:16319;Parent=Msa0297610-mRNA-1 |
| chr2_3 | five_prime_UTR | 51325399 | 51325545 | 51325399 | ID=Msa0297610-mRNA-1:five_prime_utr;Parent=Msa0297610-mRNA-1 |
| chr2_3 | CDS | 51325546 | 51325558 | 51325546 | ID=Msa0297610-mRNA-1:cds;Parent=Msa0297610-mRNA-1 |
| chr2_3 | CDS | 51325840 | 51325916 | 51325840 | ID=Msa0297610-mRNA-1:cds;Parent=Msa0297610-mRNA-1 |
| chr2_3 | CDS | 51326007 | 51326181 | 51326007 | ID=Msa0297610-mRNA-1:cds;Parent=Msa0297610-mRNA-1 |
| chr2_3 | CDS | 51326731 | 51326775 | 51326731 | ID=Msa0297610-mRNA-1:cds;Parent=Msa0297610-mRNA-1 |
| chr2_3 | CDS | 51326869 | 51327041 | 51326869 | ID=Msa0297610-mRNA-1:cds;Parent=Msa0297610-mRNA-1 |
| chr2_3 | CDS | 51327310 | 51327381 | 51327310 | ID=Msa0297610-mRNA-1:cds;Parent=Msa0297610-mRNA-1 |
| chr2_3 | CDS | 51327472 | 51327562 | 51327472 | ID=Msa0297610-mRNA-1:cds;Parent=Msa0297610-mRNA-1 |
| chr2_3 | CDS | 51328202 | 51328319 | 51328202 | ID=Msa0297610-mRNA-1:cds;Parent=Msa0297610-mRNA-1 |
| chr2_3 | CDS | 51328431 | 51328491 | 51328431 | ID=Msa0297610-mRNA-1:cds;Parent=Msa0297610-mRNA-1 |
| chr2_3 | three_prime_UTR | 51328492 | 51328778 | 51328492 | ID=Msa0297610-mRNA-1:three_prime_utr;Parent=Msa0297610-mRNA-1 |
| chr2_3 | three_prime_UTR | 51328847 | 51328961 | 51328847 | ID=Msa0297610-mRNA-1:three_prime_utr;Parent=Msa0297610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
