AlfalfaGEDB | Msa1045230

M. sativa cultivar zhongmu-4 / Msa1045230

KEGG: -
GO: -
PFAM: PF06813.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045230	XP_013447979.1	71.250	160	44	2	1	160	1	158	7.81e-60	222
Msa1045230	XP_013447979.1	97.719	570	13	0	113	682	20	589	0.0	1123

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045230	sp\|F4I9E1\|NFD4_ARATH	23.304	575	369	15	113	672	48	565	1.55e-30	130

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045230	A0A072TXV1	71.250	160	44	2	1	160	1	158	3.73e-60	222
Msa1045230	A0A072TXV1	97.719	570	13	0	113	682	20	589	0.0	1123

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0013270	Msa1045230	0.805897	1.069199e-49	-8.615850e-47
Msa0037180	Msa1045230	0.811696	6.152635e-51	-8.615850e-47
Msa0044160	Msa1045230	0.805631	1.216190e-49	-8.615850e-47
Msa0045810	Msa1045230	0.816031	6.819035e-52	-8.615850e-47
Msa0046870	Msa1045230	0.802701	4.951432e-49	-8.615850e-47
Msa0139500	Msa1045230	0.833565	4.958257e-56	-8.615850e-47
Msa0140880	Msa1045230	0.816506	5.339657e-52	-8.615850e-47
Msa0143590	Msa1045230	0.923234	3.475332e-89	-8.615850e-47
Msa0177320	Msa1045230	0.835685	1.453172e-56	-8.615850e-47
Msa0183710	Msa1045230	0.810771	9.764090e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045230	MtrunA17_Chr7g0225191	97.719	570	13	0	113	682	20	589	0.0	1123
Msa1045230	MtrunA17_Chr7g0225191	71.250	160	44	2	1	160	1	158	7.18e-64	222
Msa1045230	MtrunA17_Chr3g0132161	50.783	575	236	5	113	675	20	559	0.0	549
Msa1045230	MtrunA17_Chr3g0132161	59.292	113	46	0	1	113	1	113	1.49e-34	139
Msa1045230	MtrunA17_Chr2g0304561	35.512	566	342	7	115	679	19	562	1.20e-109	343
Msa1045230	MtrunA17_Chr2g0304561	39.216	102	59	1	13	111	10	111	3.45e-14	75.9
Msa1045230	MtrunA17_Chr4g0064981	35.889	574	336	9	115	679	18	568	2.12e-109	342
Msa1045230	MtrunA17_Chr4g0064981	40.000	115	64	2	13	122	9	123	3.75e-16	82.0
Msa1045230	MtrunA17_Chr5g0405621	34.798	569	312	7	113	678	18	530	4.20e-101	320
Msa1045230	MtrunA17_Chr5g0405621	40.816	98	58	0	14	111	12	109	5.39e-16	81.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045230	AT3G01930.2	69.983	573	152	4	113	676	21	582	0.0	799
Msa1045230	AT3G01930.2	74.312	109	28	0	5	113	6	114	1.87e-46	174
Msa1045230	AT5G14120.1	70.951	568	150	4	113	676	21	577	0.0	798
Msa1045230	AT5G14120.1	72.321	112	31	0	2	113	3	114	3.81e-47	176
Msa1045230	AT3G01930.1	67.708	480	135	4	206	676	1	469	0.0	647
Msa1045230	AT3G01930.3	72.048	415	107	3	113	518	21	435	0.0	587
Msa1045230	AT3G01930.3	74.312	109	28	0	5	113	6	114	9.57e-48	174
Msa1045230	AT5G50630.1	47.803	569	242	7	113	677	21	538	1.32e-180	525
Msa1045230	AT5G50630.1	62.500	112	41	1	1	111	2	113	3.68e-36	144
Msa1045230	AT5G50520.1	47.803	569	242	7	113	677	21	538	1.32e-180	525

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Find 165 sgRNAs with CRISPR-Local

Find 479 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCGGGGTCCCGTGGT+TGG	0.515273	7_2:+4478856	Msa1045230:CDS
AAACAAGTGCGGCCGTCGGA+TGG	0.533967	7_2:+4479039	Msa1045230:CDS
AAAGAATTTGCAAAACCGCG+TGG	0.673930	7_2:-4480935	None:intergenic
AAAGACCTTGGTGATGCTGT+TGG	0.596617	7_2:+4474161	Msa1045230:CDS
AAAGACCTTGGTGATTGTGT+TGG	0.574197	7_2:+4476055	Msa1045230:CDS
AAAGTTCCAAATACTGATCA+TGG	0.424968	7_2:-4479625	None:intergenic
AAATCTTTCACGTTGGTTTA+TGG	0.174292	7_2:+4479063	Msa1045230:CDS
AAATTCCAACCACGGGACCC+CGG	0.570142	7_2:-4478861	None:intergenic
AACTTTCTTGGACGTGTTGG+AGG	0.470215	7_2:+4479642	Msa1045230:CDS
AAGGAGCTGTGAGGGTTAAG+AGG	0.447202	7_2:+4479427	Msa1045230:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAACCCTATACAAAAGTAGA+TGG	+	chr7_2:4474009-4474028	Msa1045230:CDS	30.0%
GCTGGTATAGGATATTTATT+TGG	+	chr7_2:4474068-4474087	Msa1045230:CDS	30.0%
AAAAAACTTACAGCCCATAA+AGG	-	chr7_2:4474311-4474330	None:intergenic	30.0%
ACCCTTTATTCCAGATATTA+TGG	-	chr7_2:4474915-4474934	None:intergenic	30.0%
ACTTTAAATCTAACAGTGAC+AGG	+	chr7_2:4474967-4474986	Msa1045230:intron	30.0%
CAAGATTGAGAAAAGAGAAA+TGG	-	chr7_2:4475031-4475050	None:intergenic	30.0%
AAAAGGAGAATGTGAAAGAA+TGG	+	chr7_2:4475195-4475214	Msa1045230:intron	30.0%
TGTATACCATTATATCTGGA+GGG	-	chr7_2:4475250-4475269	None:intergenic	30.0%
ATGTATACCATTATATCTGG+AGG	-	chr7_2:4475251-4475270	None:intergenic	30.0%
ACTTTACTCAATTTGGTTGT+TGG	+	chr7_2:4475329-4475348	Msa1045230:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	4473984	4481261	4473984	ID=Msa1045230;Name=Msa1045230
chr7_2	mRNA	4473984	4481261	4473984	ID=Msa1045230-mRNA-1;Parent=Msa1045230;Name=Msa1045230-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0.33\|0.5\|1\|1\|1\|4\|482\|682
chr7_2	exon	4473984	4474323	4473984	ID=Msa1045230-mRNA-1:exon:1045;Parent=Msa1045230-mRNA-1
chr7_2	exon	4475939	4476213	4475939	ID=Msa1045230-mRNA-1:exon:1046;Parent=Msa1045230-mRNA-1
chr7_2	exon	4478772	4479691	4478772	ID=Msa1045230-mRNA-1:exon:1047;Parent=Msa1045230-mRNA-1
chr7_2	exon	4480266	4481261	4480266	ID=Msa1045230-mRNA-1:exon:1048;Parent=Msa1045230-mRNA-1
chr7_2	CDS	4473984	4474323	4473984	ID=Msa1045230-mRNA-1:cds;Parent=Msa1045230-mRNA-1
chr7_2	CDS	4475939	4476213	4475939	ID=Msa1045230-mRNA-1:cds;Parent=Msa1045230-mRNA-1
chr7_2	CDS	4478772	4479691	4478772	ID=Msa1045230-mRNA-1:cds;Parent=Msa1045230-mRNA-1
chr7_2	CDS	4480266	4480779	4480266	ID=Msa1045230-mRNA-1:cds;Parent=Msa1045230-mRNA-1
chr7_2	three_prime_UTR	4480780	4481261	4480780	ID=Msa1045230-mRNA-1:three_prime_utr;Parent=Msa1045230-mRNA-1

Gene Sequence

>Msa1045230

ATGAGTGCATTAAAAGAGAAATTGATAACCCTATACAAAAGTAGATGGTTTGTTTTTGTAGGAGCAATGTGGTTACAATCATGGGCTGGTATAGGATATTTATTTGGAAGCATATCACCAGTTATAAAAAGTTCATTAAATTATAATCAAAAACAACTTGCTATGTTAGGTGTTGCAAAAGACCTTGGTGATGCTGTTGGTTTTTTAACTGGTGTTTTGTGTGAAATTTTACCTATTTGGGCTGCGTTACTTGTTGGAGCTTCTTTGAATCTTGTTGGTTATGGCTGGGTTTGGTTAATTGTTACTAGTAAAGTTCCTGTTCTTCCTTTATGGGCTGTAAGAGCAATGTGGTTACAATCATGGGCTGGTATAGGATATTTATTTGGAAGCATATCACCAGTTATAAAAAGTTCATTAAATTATAATCAAAAACAACTTGCTATGTTAGGTGTTGCAAAAGACCTTGGTGATTGTGTTGGTTTTTTAACTGGTGTTTTGTGTGAAATTTTACCTATTTGGGCTGCTTTGCTTGTTGGAGCTTCTTTGAATCTTGTTGGTTATGGCTGGGTTTGGTTAATTGTTACTAGTAAAGTTCCTGTTCTTCCTTTATGGGCTATGTGTATTCTTATATTTGTGGGAACAAATGGTGAAACCTACTTCAACACAGTTTCTTTGGTTTCTTGTGTTCAAAATTTCCCGAAAAGCCGGGGTCCCGTGGTTGGAATTTTAAAGGGCTTTGCTGGATTGAGTGGTGCAATATTGACTCAAATATATGCAGTTATCCATTCCCCTGATCATGCATCGTTAATATTCATGGTTGCTGTTGGTCCAGCATTGGTAGGAATAGGTCTTATGTTCATTGTTAGACCTGTCGGAGGTCACAAACAAGTGCGGCCGTCGGATGGAAAATCTTTCACGTTGGTTTATGGTGTATGTCTCTTGTTGGCTGCTTATTTGATGGGAGTTATGGTTGTTCAAGATTTAGTTGATCTGAGTGAAACTGTTATCACAATTTTTACAATCATCCTCTTTTTGATCCTCATTGCTCCGATTATAATTCCTTTGTCATTAACCTTCGGCCCTGCGGAAAAACCTCTAGAGGAAGAAGCACTTCTTCCAGAAACAGAAGGACAATCTCAAAATTATTCAGATGAAGTAATATTAAGTGAGTTGGAAGATGAGAAGCCTAAGGAAGTGGACTTGCTCCCTGCGTCGGAAAGGCAGAAACGTATAGCACAATTACAATCAAGACTGCTGCAAGCTGCTGCAGAAGGAGCTGTGAGGGTTAAGAGGAGGAGAGGACCACATAGAGGAGAAGATTTTACCTTGACGCAAGCTTTGATTAAAGCAGATTTTTGGCTTCTTTTCATTTCCATGGTCTTAGGTTCTGGATCTGGGTTGACTGTAATTGACAATCTCGGTCAGATGAGCCAGTCTTTGGGATATGACAATGCACATATTTTCGTCTCCATGATCAGTATTTGGAACTTTCTTGGACGTGTTGGAGGCGGCTACATATCTGAGATTGTTGTCAAGGATCATACATATCCAAGACCAGCTGCATTAGCTGCATTTCAACTAGCTATGACTGTTGGTCATCTTTTCATTGGCATGGGATGGCCAGGTTCAATGTACGTTGGCACTTTACTAGTTGGACTTGGTTACGGTGCTCATTGGGCAGTTGTTCCAGCTACAGCCTCTGAATTATTTGGTTTAAGAAACTTTGGTGCATTATACAATTTCATCACTCTAGCAAACCCTGTTGGAACTCTTGTCTTCTCTAGTCTCATTGCTAGTAGGATCTATGATTATGAAGCAGAGAAACAAGCTCATGGTGGCCAAAACCTGAATATAGCATCATTCGTATCTAGTGCGCTTAATGTTGGTGACGCGCCAAAGTGCGAAGGTTCCATATGCTTCTTCCTGACATCCACTATCATGGCAGGATTATGCATTGTTGCGGCAGGGTTAAGCATGTTTCTCGTGTTCCGAACAAGGATTGTTTATGCTAGCTTGTATGGAAAATCTTCTATGCGAAGCCTTCGATGA

Protein sequence

>Msa1045230

MSALKEKLITLYKSRWFVFVGAMWLQSWAGIGYLFGSISPVIKSSLNYNQKQLAMLGVAKDLGDAVGFLTGVLCEILPIWAALLVGASLNLVGYGWVWLIVTSKVPVLPLWAVRAMWLQSWAGIGYLFGSISPVIKSSLNYNQKQLAMLGVAKDLGDCVGFLTGVLCEILPIWAALLVGASLNLVGYGWVWLIVTSKVPVLPLWAMCILIFVGTNGETYFNTVSLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYAVIHSPDHASLIFMVAVGPALVGIGLMFIVRPVGGHKQVRPSDGKSFTLVYGVCLLLAAYLMGVMVVQDLVDLSETVITIFTIILFLILIAPIIIPLSLTFGPAEKPLEEEALLPETEGQSQNYSDEVILSELEDEKPKEVDLLPASERQKRIAQLQSRLLQAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLLFISMVLGSGSGLTVIDNLGQMSQSLGYDNAHIFVSMISIWNFLGRVGGGYISEIVVKDHTYPRPAALAAFQLAMTVGHLFIGMGWPGSMYVGTLLVGLGYGAHWAVVPATASELFGLRNFGALYNFITLANPVGTLVFSSLIASRIYDYEAEKQAHGGQNLNIASFVSSALNVGDAPKCEGSICFFLTSTIMAGLCIVAAGLSMFLVFRTRIVYASLYGKSSMRSLR*