AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0430820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0430820 MtrunA17_Chr3g0134631 99.141 931 4 1 10 940 1 927 0.0 1865
Msa0430820 MtrunA17_Chr8g0385811 95.811 931 34 2 10 940 1 926 0.0 1772
Msa0430820 MtrunA17_Chr3g0131711 89.689 931 87 4 10 940 1 922 0.0 1649
Msa0430820 MtrunA17_Chr3g0135231 80.000 620 83 8 10 622 1 586 0.0 947
Msa0430820 MtrunA17_Chr3g0135231 68.966 116 26 1 728 843 545 650 8.55e-39 154
Msa0430820 MtrunA17_Chr3g0102771 50.349 860 312 11 105 925 1 784 0.0 805
Msa0430820 MtrunA17_Chr3g0131351 46.296 864 411 13 105 925 100 953 0.0 753
Msa0430820 MtrunA17_Chr6g0454071 43.962 944 418 19 51 916 26 936 0.0 723
Msa0430820 MtrunA17_Chr7g0218421 44.176 910 399 16 85 916 62 940 0.0 720
Msa0430820 MtrunA17_Chr3g0137071 44.545 880 390 13 109 916 96 949 0.0 710
Msa0430820 MtrunA17_Chr4g0061371 41.657 881 421 14 107 920 4 858 0.0 646
Msa0430820 MtrunA17_Chr7g0225161 41.742 884 419 16 108 923 5 860 0.0 622
Msa0430820 MtrunA17_Chr2g0329561 40.000 330 181 3 595 923 143 456 1.33e-74 253
Msa0430820 MtrunA17_Chr2g0277781 42.568 296 152 4 595 888 2 281 2.78e-73 243
Msa0430820 MtrunA17_Chr1g0188061 76.522 115 26 1 138 252 20 133 9.67e-48 174
Msa0430820 MtrunA17_Chr1g0188061 62.143 140 42 2 672 811 221 349 4.71e-42 157
Msa0430820 MtrunA17_Chr1g0188061 48.913 92 17 1 428 519 153 214 3.91e-16 81.3
Msa0430820 MtrunA17_Chr7g0260931 44.048 84 47 0 592 675 11 94 2.48e-20 86.7
Msa0430820 MtrunA17_Chr2g0277771 32.026 153 87 3 772 923 1 137 2.08e-16 78.2
Msa0430820 MtrunA17_Chr6g0468911 78.261 46 6 1 246 291 164 205 1.58e-13 71.6
Msa0430820 MtrunA17_Chr5g0398561 28.906 128 88 2 108 232 85 212 5.18e-12 66.6
Msa0430820 MtrunA17_Chr4g0073021 27.381 168 111 3 609 775 657 814 7.36e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0430820 AT5G50920.1 85.729 939 118 8 7 940 1 928 0.0 1556
Msa0430820 AT3G48870.2 84.719 890 128 3 41 929 21 903 0.0 1475
Msa0430820 AT3G48870.1 84.719 890 128 3 41 929 52 934 0.0 1474
Msa0430820 AT3G48870.4 84.719 890 128 3 41 929 52 934 0.0 1474
Msa0430820 AT3G48870.3 84.719 890 128 3 41 929 52 934 0.0 1474
Msa0430820 AT5G51070.1 48.778 859 386 10 104 920 78 924 0.0 769
Msa0430820 AT5G15450.1 43.418 942 428 17 52 916 20 933 0.0 711
Msa0430820 AT2G25140.1 43.062 908 413 14 100 930 77 957 0.0 709
Msa0430820 AT1G74310.1 42.202 872 416 14 107 915 4 850 0.0 654
Msa0430820 AT1G74310.2 42.566 834 391 14 107 877 4 812 0.0 628
Msa0430820 AT4G14670.1 42.657 572 245 11 200 713 77 623 8.71e-138 426
Msa0430820 AT3G45450.1 59.892 369 97 7 105 471 1 320 6.59e-123 377
Msa0430820 AT4G30350.1 30.409 171 106 3 605 775 563 720 3.92e-13 74.3
Msa0430820 AT4G12060.1 28.652 178 117 5 58 232 50 220 4.78e-11 64.3

Find 274 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTTCCCTCTATGGTTTC+AGG 0.100613 3_2:-82691733 None:intergenic
CGCACGTGTTCTTGAAAATT+TGG 0.126955 3_2:+82691180 Msa0430820:CDS
TCTCGGTGACAGAGAGATTT+AGG 0.140708 3_2:+82694638 Msa0430820:CDS
CTTCCACGCGAGAGTCTTTC+AGG 0.146397 3_2:-82690692 None:intergenic
GCTTGACATGAGCGAATTTA+TGG 0.159830 3_2:+82694120 Msa0430820:CDS
CAACATGATGCTTCAAATTC+TGG 0.187197 3_2:+82694288 Msa0430820:CDS
CGGATCTGAGCACCTGCTTT+TGG 0.194234 3_2:+82691129 Msa0430820:CDS
ATCAAAATCCTAGGGAAAAT+TGG 0.199430 3_2:+82691558 Msa0430820:intron
CTCTGCTAGCTTGGTCAAAT+TGG 0.202101 3_2:-82691436 None:intergenic
CTACTTTGCTTTGTTAGATA+TGG 0.209103 3_2:-82694976 None:intergenic
ACCTTACACAAACGCATTAT+TGG 0.236179 3_2:+82693920 Msa0430820:CDS
ACCAACCTGCTTTCCCTCTA+TGG 0.247395 3_2:-82691740 None:intergenic
AAGAATCATGTCTAGGGTTT+TGG 0.250519 3_2:+82690236 Msa0430820:CDS
TCAAGTCCTCTTGCTTCTTC+AGG 0.256167 3_2:-82693359 None:intergenic
GTTGGCTCTGGCACTTTAAC+TGG 0.258175 3_2:-82692714 None:intergenic
AGAGACTCGGGCAATGAATT+TGG 0.261614 3_2:-82694850 None:intergenic
TTAGGTTATAACCCTGGATA+TGG 0.267891 3_2:+82692001 Msa0430820:intron
TGCTAAGGTTCTAAAGTCTA+TGG 0.277785 3_2:+82690662 Msa0430820:CDS
GCACGTGTTCTTGAAAATTT+GGG 0.281105 3_2:+82691181 Msa0430820:CDS
AAGAGCTATAATGCGACTTT+TGG 0.284061 3_2:+82694714 Msa0430820:CDS
ATTACGTCCTTTGAACTCTT+TGG 0.285314 3_2:+82690401 Msa0430820:CDS
CACCGAGAGCTCAATCTCTT+TGG 0.293521 3_2:-82694623 None:intergenic
CGCATTATAGCTCTTCTTAG+AGG 0.323792 3_2:-82694706 None:intergenic
GTGGAAGTTGAAAAGATAAT+TGG 0.327154 3_2:+82690708 Msa0430820:CDS
TACTTTGCTTTGTTAGATAT+GGG 0.331434 3_2:-82694975 None:intergenic
TCCGCGTGCCAAGAGAGTTT+TGG 0.333734 3_2:+82690770 Msa0430820:CDS
GTGAGGGTGCTGACAATGTT+GGG 0.335259 3_2:+82691355 Msa0430820:CDS
AAAATAATCCTTGTCTTATC+GGG 0.342428 3_2:+82691644 Msa0430820:CDS
TGAACGTGTTACTCAAATCT+TGG 0.342471 3_2:+82691609 Msa0430820:CDS
AAGCTGGCAATCGGCCGGTT+AGG 0.355998 3_2:-82694007 None:intergenic
CTCTTGGCACGCGGAGTAAA+CGG 0.356129 3_2:-82690762 None:intergenic
TTTCAGGCAACTTACAAAAC+TGG 0.356617 3_2:+82694546 Msa0430820:CDS
TTTCTAGGTCACAATTATAT+CGG 0.363485 3_2:+82691109 Msa0430820:intron
TCAAAGAGTACAACAGTATA+GGG 0.366004 3_2:-82694235 None:intergenic
CTTAGAATGAAAATCTTGTC+TGG 0.369749 3_2:-82690439 None:intergenic
CGGAGGTGAACCAATGAGTT+TGG 0.370786 3_2:-82694158 None:intergenic
TAAATACTTATGCAGTGTAT+AGG 0.372611 3_2:+82692624 Msa0430820:intron
ATTGGATTATTGTTAGTGTA+AGG 0.378449 3_2:+82694944 Msa0430820:three_prime_UTR
AAGCCCTTTCAATATTTGTA+TGG 0.382216 3_2:-82692748 None:intergenic
ATGCGAATGTCTGGTTTCTC+TGG 0.383078 3_2:+82690378 Msa0430820:CDS
CTCGGTGACAGAGAGATTTA+GGG 0.386306 3_2:+82694639 Msa0430820:CDS
GCGCTCCACTTGAGGGGAAC+AGG 0.396953 3_2:+82691317 Msa0430820:intron
GTAGTATGAGGCCAATGTTT+TGG 0.397446 3_2:-82694071 None:intergenic
AGCTGTCATATCAATATATC+AGG 0.398244 3_2:+82692835 Msa0430820:CDS
GATATGGGTCTACTTGTTGC+TGG 0.403560 3_2:+82692017 Msa0430820:CDS
GGATAAAGAAATGGATCTTA+AGG 0.405165 3_2:+82693718 Msa0430820:CDS
GCTTTCCCTCTATGGTTTCA+GGG 0.405959 3_2:-82691732 None:intergenic
CTCACATTATGTATTGCCTA+AGG 0.413710 3_2:+82695101 Msa0430820:three_prime_UTR
TCGGCGGATAGCACGGCTAA+TGG 0.414424 3_2:-82693963 None:intergenic
GGAGGTTAGGCAGATAGTTA+AGG 0.414639 3_2:+82693385 Msa0430820:CDS
ACCAATAATGCGTTTGTGTA+AGG 0.422221 3_2:-82693921 None:intergenic
CAACAAGTAGACCCATATCC+AGG 0.426014 3_2:-82692013 None:intergenic
TGGGAGGCTAACAGATAGTA+AGG 0.426292 3_2:+82694315 Msa0430820:CDS
CATATCTAACAAAGCAAAGT+AGG 0.429316 3_2:+82694977 Msa0430820:three_prime_UTR
ATGCCAACTTTGGAGGAGTA+TGG 0.429557 3_2:+82691411 Msa0430820:CDS
ATGCGATATGTATTAAGAAA+TGG 0.431115 3_2:-82695166 None:intergenic
ATCAACAGCTAAACAGACTA+TGG 0.436690 3_2:-82694905 None:intergenic
TCAACTGAGACTTTATCAAC+AGG 0.436921 3_2:-82693866 None:intergenic
ATTGGTGAAGGCACTGGTAT+TGG 0.438124 3_2:+82690639 Msa0430820:CDS
ACATTGGCCTCATACTACTT+TGG 0.440804 3_2:+82694076 Msa0430820:CDS
GATGAAGTGCACACTCTCAT+TGG 0.443128 3_2:+82692125 Msa0430820:CDS
GAACGTGTTACTCAAATCTT+GGG 0.444979 3_2:+82691610 Msa0430820:CDS
TATAGCTCTTCTTAGAGGTC+TGG 0.445858 3_2:-82694701 None:intergenic
ATCAAAGAGTACAACAGTAT+AGG 0.446881 3_2:-82694236 None:intergenic
GTTGGGGCTACTGTTGGCTC+TGG 0.447309 3_2:+82691372 Msa0430820:CDS
GTTTCACTCACAGTTGGCTC+TGG 0.448062 3_2:-82692726 None:intergenic
CTTCGACCAGCCACTAGGCC+GGG 0.448708 3_2:-82690276 None:intergenic
CCTTGTCTTATCGGGGAACC+TGG 0.449260 3_2:+82691652 Msa0430820:CDS
ACTGCTACAATGCGAATGTC+TGG 0.449766 3_2:+82690369 Msa0430820:CDS
TTAGGCCAGAGTTCTTGAAT+AGG 0.449813 3_2:+82694506 Msa0430820:CDS
AGAGAGATTTAGGGAGAGAG+TGG 0.450512 3_2:+82694648 Msa0430820:CDS
CATATTGTTGCCGCCTGGAC+TGG 0.450552 3_2:+82693839 Msa0430820:CDS
GGGTCTTCTTCGAGAGGGTG+AGG 0.450707 3_2:+82691150 Msa0430820:CDS
AAGATAATTGGAAGGGGTAG+TGG 0.451151 3_2:+82690720 Msa0430820:CDS
ATCAAATCTATAGCTTTGTC+AGG 0.451675 3_2:-82693204 None:intergenic
ATGCTTCAAATTCTGGAAGA+TGG 0.451874 3_2:+82694295 Msa0430820:CDS
GTAGGGAATGGTTCGGGACC+TGG 0.454230 3_2:+82694995 Msa0430820:three_prime_UTR
TGAGTAACACGTTCAATTTG+TGG 0.454252 3_2:-82691601 None:intergenic
GTCAATTGACTGAGGCAGTT+CGG 0.454440 3_2:+82694206 Msa0430820:CDS
GGTGAGGGTGCTGACAATGT+TGG 0.456250 3_2:+82691354 Msa0430820:CDS
AGTTACCTCCTCTGCTAGCT+TGG 0.457680 3_2:-82691445 None:intergenic
TAAATATCGTGGAGAATTTG+AGG 0.457915 3_2:+82692043 Msa0430820:CDS
AATAGAGCAAGGGGTGGTAG+AGG 0.458667 3_2:+82690483 Msa0430820:CDS
AGCCATGTTTGAGCGTTTCA+CGG 0.458933 3_2:+82690524 Msa0430820:CDS
CAAACTCATTGGTTCACCTC+CGG 0.462565 3_2:+82694159 Msa0430820:CDS
AGCAAAGTAGGGAATGGTTC+GGG 0.462882 3_2:+82694989 Msa0430820:three_prime_UTR
AGCAAGGCAGAGAGTGAGGC+AGG 0.463527 3_2:+82693779 Msa0430820:CDS
AACGTCCCCGGCCTAGTGGC+TGG 0.463587 3_2:+82690270 Msa0430820:CDS
AGCATCATGTTGAAGACATC+AGG 0.464962 3_2:-82694277 None:intergenic
GCCAGAGTTCTTGAATAGGC+TGG 0.465682 3_2:+82694510 Msa0430820:CDS
GAGGACTTGAAAAGGAGGTT+AGG 0.468047 3_2:+82693372 Msa0430820:CDS
GGTCTTATTGGTGAAGGCAC+TGG 0.469001 3_2:+82690633 Msa0430820:CDS
ATGAGAACATAATACTAGCC+TGG 0.470100 3_2:-82691228 None:intergenic
AGCTGGCAATCGGCCGGTTA+GGG 0.470925 3_2:-82694006 None:intergenic
AGGAGCTGAAGCAATACTTT+AGG 0.471670 3_2:+82694488 Msa0430820:CDS
GCTCTGGCACTTTAACTGGC+TGG 0.472399 3_2:-82692710 None:intergenic
GAGAGTGAGGCAGGAGATGT+AGG 0.476103 3_2:+82693788 Msa0430820:CDS
TGGAATCTCCTCTCCAAAGC+TGG 0.479271 3_2:-82692690 None:intergenic
AAACTCATTGGTTCACCTCC+GGG 0.479765 3_2:+82694160 Msa0430820:CDS
ATCACCATTTGCAATCCGTT+GGG 0.479951 3_2:-82691707 None:intergenic
AACCAAAGAGATTGAGCTCT+CGG 0.480234 3_2:+82694621 Msa0430820:CDS
ACAATTTAAGAATCATGTCT+AGG 0.482663 3_2:+82690229 Msa0430820:CDS
ATCTGATCGCCTTCTCAAGA+TGG 0.482687 3_2:+82693892 Msa0430820:CDS
AAGCAAAGTAGGGAATGGTT+CGG 0.483765 3_2:+82694988 Msa0430820:three_prime_UTR
TGTGGCTGCCTACCCACAAC+AGG 0.484594 3_2:-82691583 None:intergenic
TAATAGCAAGATGCCAACTT+TGG 0.484716 3_2:+82691401 Msa0430820:CDS
CACACAGTCTCCAAACTCAT+TGG 0.487127 3_2:+82694148 Msa0430820:CDS
CCTTCGACCAGCCACTAGGC+CGG 0.487507 3_2:-82690277 None:intergenic
TCAAGAGGAAGCTAGGCGGC+TGG 0.487637 3_2:+82690575 Msa0430820:CDS
CATCACCATTTGCAATCCGT+TGG 0.487841 3_2:-82691708 None:intergenic
GACAATGTTGGGGCTACTGT+TGG 0.488557 3_2:+82691366 Msa0430820:CDS
AGAGCTACGGGATAAAGAAA+TGG 0.489616 3_2:+82693709 Msa0430820:CDS
ACTTACAAAACTGGAGGTTA+AGG 0.491625 3_2:+82694555 Msa0430820:CDS
GAAAAGATGAAGCTGGCAAT+CGG 0.492611 3_2:-82694016 None:intergenic
CTCGCCCAACGGATTGCAAA+TGG 0.493109 3_2:+82691703 Msa0430820:CDS
GATCTGAAGAAGCCATGATT+CGG 0.495790 3_2:+82694098 Msa0430820:CDS
TAGGGAATGGTTCGGGACCT+GGG 0.496575 3_2:+82694996 Msa0430820:three_prime_UTR
GGAAAATTGGATCCTGTTGT+GGG 0.497774 3_2:+82691571 Msa0430820:CDS
CACGAGCTCGGCGGATAGCA+CGG 0.498274 3_2:-82693970 None:intergenic
AGAGGGTGACTCTGTTATAG+TGG 0.499343 3_2:+82694777 Msa0430820:CDS
TGAGAGCTCCAAAACTCTCT+TGG 0.499740 3_2:-82690778 None:intergenic
GAAGGTTATAATCCTAGTTA+TGG 0.501031 3_2:+82694676 Msa0430820:CDS
AGTTATTATGCTGGCTCAAG+AGG 0.501600 3_2:+82690560 Msa0430820:CDS
AGAAGCAAGAGGACTTGAAA+AGG 0.502649 3_2:+82693364 Msa0430820:CDS
GCTCATGTCAAGCCGAATCA+TGG 0.503230 3_2:-82694110 None:intergenic
ATCAACAGGGATACCAGTCC+AGG 0.503737 3_2:-82693852 None:intergenic
GCCTGGGTGCGAATATTAGT+TGG 0.503945 3_2:-82691211 None:intergenic
TCTAAGGTGCTCACTCAGAT+TGG 0.504328 3_2:+82690456 Msa0430820:CDS
AATAGGTTACAGACTCCCTT+AGG 0.504341 3_2:-82695117 None:intergenic
CAAGAGCATCATCGGTATAA+CGG 0.506415 3_2:-82692800 None:intergenic
GGGAAAATTGGATCCTGTTG+TGG 0.507874 3_2:+82691570 Msa0430820:intron
TCTTCGAGAGGGTGAGGGTG+TGG 0.509014 3_2:+82691156 Msa0430820:CDS
TGAATAGGCTGGAGAGCTAC+GGG 0.510340 3_2:+82693697 Msa0430820:intron
AATGGTTCGGGACCTGGGAT+AGG 0.512798 3_2:+82695001 Msa0430820:three_prime_UTR
CCGGCCTAGTGGCTGGTCGA+AGG 0.513011 3_2:+82690277 Msa0430820:CDS
ATAGATTTGATTGACGAAGC+TGG 0.513521 3_2:+82693216 Msa0430820:CDS
CTGAATAGGCTGGAGAGCTA+CGG 0.514789 3_2:+82693696 Msa0430820:intron
CAATTTAAGAATCATGTCTA+GGG 0.514905 3_2:+82690230 Msa0430820:CDS
CTTATAATGACATCAAATGT+TGG 0.515383 3_2:+82694367 Msa0430820:CDS
AGAGGTCTGGCACCATAACT+AGG 0.516524 3_2:-82694688 None:intergenic
TAGGTTATAACCCTGGATAT+GGG 0.517736 3_2:+82692002 Msa0430820:intron
CAAGAGGAAGCTAGGCGGCT+GGG 0.518796 3_2:+82690576 Msa0430820:CDS
TTCAGATCCAAAGTAGTATG+AGG 0.520690 3_2:-82694083 None:intergenic
GTGCATGTTGAAGTCGAACT+CGG 0.521141 3_2:-82693242 None:intergenic
TGTATGGTTTCACTCACAGT+TGG 0.521619 3_2:-82692732 None:intergenic
GTGCCATACTCCTCCAAAGT+TGG 0.521933 3_2:-82691414 None:intergenic
TGCTTCAAATTCTGGAAGAT+GGG 0.523168 3_2:+82694296 Msa0430820:CDS
GGTCTTCTTCGAGAGGGTGA+GGG 0.523904 3_2:+82691151 Msa0430820:CDS
CTCAGTCAATTGACCACCCT+CGG 0.523973 3_2:-82694197 None:intergenic
TCGCAATCAAGAATTTGAAA+AGG 0.526527 3_2:+82693424 Msa0430820:CDS
TACAACATATTGTTGCCGCC+TGG 0.526555 3_2:+82693834 Msa0430820:CDS
CCACAACACTAGATGAATAC+AGG 0.528109 3_2:+82692649 Msa0430820:CDS
GCTAAGGTTCTAAAGTCTAT+GGG 0.528708 3_2:+82690663 Msa0430820:CDS
CATGCCTTCGACCAGCCACT+AGG 0.529171 3_2:-82690281 None:intergenic
AAACCATACAAATATTGAAA+GGG 0.529564 3_2:+82692745 Msa0430820:CDS
GCTATCCGCCGAGCTCGTGT+TGG 0.533622 3_2:+82693974 Msa0430820:CDS
GTGCACACTCTCATTGGAGC+AGG 0.534139 3_2:+82692131 Msa0430820:CDS
AGCGATCAAAGTTATTATGC+TGG 0.535152 3_2:+82690551 Msa0430820:CDS
TTGGACTTAAGAACCCTAAC+CGG 0.535590 3_2:+82693993 Msa0430820:CDS
CTCGAAGAAGACCCAAAAGC+AGG 0.536165 3_2:-82691141 None:intergenic
AGGGAGAGAGTGGTTGACGA+AGG 0.536287 3_2:+82694658 Msa0430820:CDS
TCTTGCTAGAGGTGAACTAC+AGG 0.537146 3_2:+82692199 Msa0430820:CDS
ATAGCTGTCTTTCCGACACC+AGG 0.539131 3_2:-82691670 None:intergenic
GGTTCACCTCCGGGATATGT+TGG 0.540586 3_2:+82694169 Msa0430820:CDS
TTGGAGGAAGCTCGCCAACT+TGG 0.541008 3_2:+82690801 Msa0430820:CDS
TGAGAACATAATACTAGCCT+GGG 0.541722 3_2:-82691227 None:intergenic
TAGCAAGATGCCAACTTTGG+AGG 0.541747 3_2:+82691404 Msa0430820:CDS
TTCGACCAGCCACTAGGCCG+GGG 0.543761 3_2:-82690275 None:intergenic
TTGTTGGGTCTTATTGGTGA+AGG 0.545049 3_2:+82690627 Msa0430820:CDS
AGGCACTGGTATTGGTGCTA+AGG 0.545166 3_2:+82690647 Msa0430820:CDS
GGAAGCAGTGTGATTGAGAA+AGG 0.546826 3_2:+82694388 Msa0430820:CDS
GTCTGAGTTGGCCAAAACAT+TGG 0.548843 3_2:+82694060 Msa0430820:CDS
TTAGAATGAAAATCTTGTCT+GGG 0.550033 3_2:-82690438 None:intergenic
AGGGGAACAGGTTATTCGAA+TGG 0.551374 3_2:+82691329 Msa0430820:intron
TCAACTATGCAGCCTATCCC+AGG 0.552139 3_2:-82695013 None:intergenic
TCCAGCCTATTCAAGAACTC+TGG 0.552565 3_2:-82694511 None:intergenic
AGATGAAGCTGGCAATCGGC+CGG 0.553474 3_2:-82694012 None:intergenic
CTCCGTGAAACGCTCAAACA+TGG 0.556050 3_2:-82690526 None:intergenic
AGCAGCTACAAGAGCATCAT+CGG 0.556339 3_2:-82692808 None:intergenic
AGTTCACCTCTAGCAAGAGC+TGG 0.557640 3_2:-82692194 None:intergenic
GAACAGGTTATTCGAATGGT+TGG 0.558387 3_2:+82691333 Msa0430820:CDS
TGCATGTTGAAGTCGAACTC+GGG 0.563322 3_2:-82693241 None:intergenic
GATGAGCAAGGCAGAGAGTG+AGG 0.564477 3_2:+82693775 Msa0430820:CDS
TGGAGCAGGAGCAGCTGAAG+GGG 0.565092 3_2:+82692145 Msa0430820:CDS
AAAGTATTGCTTCAGCTCCT+CGG 0.566849 3_2:-82694485 None:intergenic
ATTGGAGCAGGAGCAGCTGA+AGG 0.567685 3_2:+82692143 Msa0430820:CDS
TGAAACCATAGAGGGAAAGC+AGG 0.568538 3_2:+82691735 Msa0430820:CDS
TTATAACCGAATCAAAAGCT+TGG 0.568690 3_2:+82694459 Msa0430820:CDS
TATGCTATCACTTACCAAGT+TGG 0.569341 3_2:-82690815 None:intergenic
TGCTGGCTCAAGAGGAAGCT+AGG 0.570017 3_2:+82690568 Msa0430820:CDS
TGACCTTGACTATGATGAGA+AGG 0.570760 3_2:+82694429 Msa0430820:CDS
GAGAAAGGAGGCCGTCGCAT+AGG 0.571102 3_2:+82694403 Msa0430820:CDS
CATCGGTATAACGGAGCTTG+TGG 0.572339 3_2:-82692791 None:intergenic
AGGCATGTCAATAATAACAA+TGG 0.572370 3_2:+82690297 Msa0430820:CDS
TTGGAGCAGGAGCAGCTGAA+GGG 0.572486 3_2:+82692144 Msa0430820:CDS
TAACAAAGCAAAGTAGGGAA+TGG 0.575401 3_2:+82694983 Msa0430820:three_prime_UTR
GAAACCATACAAATATTGAA+AGG 0.576154 3_2:+82692744 Msa0430820:CDS
CCTGTATTCATCTAGTGTTG+TGG 0.576745 3_2:-82692649 None:intergenic
TTGCTGAAGGTCTCGCCCAA+CGG 0.577227 3_2:+82691692 Msa0430820:CDS
CATGATTTAGGTTATAACCC+TGG 0.577475 3_2:+82691995 Msa0430820:intron
AGCTGAAGGGGCAATTGATG+CGG 0.578062 3_2:+82692157 Msa0430820:CDS
GCTTGCTAGAGAGATTAAAG+AGG 0.579607 3_2:+82694759 Msa0430820:CDS
TCTTAAGTCCAACACGAGCT+CGG 0.580226 3_2:-82693982 None:intergenic
TCGGTATAACCAACATATCC+CGG 0.581823 3_2:-82694178 None:intergenic
GGATATGTTGGTTATACCGA+GGG 0.583016 3_2:+82694181 Msa0430820:CDS
TTTCTGGCCCTACTGGTGTG+GGG 0.583111 3_2:+82694035 Msa0430820:CDS
GATAGCTGATATAATGCTGA+AGG 0.585043 3_2:+82694579 Msa0430820:CDS
ATATCTAACAAAGCAAAGTA+GGG 0.585330 3_2:+82694978 Msa0430820:three_prime_UTR
AGGGCCAGAAAAGATGAAGC+TGG 0.586569 3_2:-82694023 None:intergenic
TGGTGTGGGGAAGTCTGAGT+TGG 0.592757 3_2:+82694048 Msa0430820:CDS
GTTATTCGAATGGTTGGTGA+GGG 0.593949 3_2:+82691339 Msa0430820:CDS
TCAGACTTCCCCACACCAGT+AGG 0.594609 3_2:-82694043 None:intergenic
AGCAAGAGGACTTGAAAAGG+AGG 0.596313 3_2:+82693367 Msa0430820:CDS
GGAAATGTGATTGTGCTCAA+TGG 0.597832 3_2:+82694814 Msa0430820:CDS
TGAGGGTGCTGACAATGTTG+GGG 0.598035 3_2:+82691356 Msa0430820:CDS
AGTTGAAAAGATAATTGGAA+GGG 0.598116 3_2:+82690713 Msa0430820:CDS
GATTGGTACTAATAGAGCAA+GGG 0.598171 3_2:+82690473 Msa0430820:CDS
CAGGCAACTTACAAAACTGG+AGG 0.601353 3_2:+82694549 Msa0430820:CDS
ATGTTACACAGGAAGAGACT+CGG 0.602576 3_2:-82694863 None:intergenic
GATTAACGTCCCCGGCCTAG+TGG 0.604895 3_2:+82690266 Msa0430820:CDS
ATAGAATCCAAAGAGTTCAA+AGG 0.604996 3_2:-82690408 None:intergenic
CAGTTACCTGAAGAAGCAAG+AGG 0.605964 3_2:+82693353 Msa0430820:intron
GCACAATCGATTAACGTCCC+CGG 0.606444 3_2:+82690258 Msa0430820:CDS
GTTGAAAAGATAATTGGAAG+GGG 0.606519 3_2:+82690714 Msa0430820:CDS
TTTGACCAAGCTAGCAGAGG+AGG 0.607369 3_2:+82691440 Msa0430820:CDS
AGATTGGTACTAATAGAGCA+AGG 0.608222 3_2:+82690472 Msa0430820:CDS
TGATGTCCCTGAAACCATAG+AGG 0.608411 3_2:+82691726 Msa0430820:CDS
TCACATTATGTATTGCCTAA+GGG 0.609005 3_2:+82695102 Msa0430820:three_prime_UTR
CATGTTGAAGACATCAGGAT+GGG 0.610516 3_2:-82694272 None:intergenic
CAGACTTCCCCACACCAGTA+GGG 0.611504 3_2:-82694042 None:intergenic
AGGTCTCTTCCATCTTGAGA+AGG 0.614391 3_2:-82693901 None:intergenic
AGTTCGACTTCAACATGCAC+AGG 0.614688 3_2:+82693245 Msa0430820:CDS
TTGAAACCAGCTCTTGCTAG+AGG 0.615304 3_2:+82692188 Msa0430820:CDS
GGAAAGACAGCTATTGCTGA+AGG 0.616017 3_2:+82691679 Msa0430820:CDS
CTTGCTAGAGAGATTAAAGA+GGG 0.623990 3_2:+82694760 Msa0430820:CDS
AATTGGATCCTGTTGTGGGT+AGG 0.625477 3_2:+82691575 Msa0430820:CDS
ATTGTGCTCAATGGTAGTAG+TGG 0.625985 3_2:+82694823 Msa0430820:CDS
TCATGTTGAAGACATCAGGA+TGG 0.628699 3_2:-82694273 None:intergenic
GGTTATTCGAATGGTTGGTG+AGG 0.630747 3_2:+82691338 Msa0430820:CDS
TGTTACACAGGAAGAGACTC+GGG 0.631623 3_2:-82694862 None:intergenic
CTTATCGGGGAACCTGGTGT+CGG 0.632802 3_2:+82691658 Msa0430820:CDS
AAATAATCCTTGTCTTATCG+GGG 0.633520 3_2:+82691645 Msa0430820:CDS
CCAGGTTCCCCGATAAGACA+AGG 0.633601 3_2:-82691652 None:intergenic
TGTCCTTCTCATCATAGTCA+AGG 0.633612 3_2:-82694432 None:intergenic
AGACCTAGGTCTTGATCTCG+CGG 0.633922 3_2:-82690322 None:intergenic
ATTGGTACTAATAGAGCAAG+GGG 0.634310 3_2:+82690474 Msa0430820:CDS
ACAAGTACACAATGTTACAC+AGG 0.636724 3_2:-82694874 None:intergenic
GGGATATGTTGGTTATACCG+AGG 0.637510 3_2:+82694180 Msa0430820:CDS
TTCAAATTCTGGAAGATGGG+AGG 0.638703 3_2:+82694299 Msa0430820:CDS
AGCTGATATAATGCTGAAGG+AGG 0.638939 3_2:+82694582 Msa0430820:CDS
CAAGGTCAAATCCTATGCGA+CGG 0.639546 3_2:-82694414 None:intergenic
AAGTTGAAAAGATAATTGGA+AGG 0.639691 3_2:+82690712 Msa0430820:CDS
TCCAAAACTCTCTTGGCACG+CGG 0.640826 3_2:-82690771 None:intergenic
AACAAGTAGACCCATATCCA+GGG 0.641634 3_2:-82692012 None:intergenic
TACATCATTCTGACAGACCT+AGG 0.643234 3_2:-82690336 None:intergenic
GATCCGCGAGATCAAGACCT+AGG 0.650976 3_2:+82690319 Msa0430820:CDS
AATCAAAAGCTTGGTGACCG+AGG 0.652415 3_2:+82694468 Msa0430820:CDS
CAACTGAGACTTTATCAACA+GGG 0.655191 3_2:-82693865 None:intergenic
GGGAGGCTAACAGATAGTAA+GGG 0.655267 3_2:+82694316 Msa0430820:CDS
TAACCTGAAAGACTCTCGCG+TGG 0.657562 3_2:+82690689 Msa0430820:CDS
AGAGTACAACAGTATAGGGA+CGG 0.660046 3_2:-82694231 None:intergenic
ATAGTGGATGCTGATTCTGA+TGG 0.662089 3_2:+82694793 Msa0430820:CDS
TATGTTGGTTATACCGAGGG+TGG 0.666290 3_2:+82694184 Msa0430820:CDS
GTTGCTGGAACTAAATATCG+TGG 0.666334 3_2:+82692032 Msa0430820:CDS
CAATTTGACCAAGCTAGCAG+AGG 0.667069 3_2:+82691437 Msa0430820:CDS
TAAGTCCAACACGAGCTCGG+CGG 0.668859 3_2:-82693979 None:intergenic
TCCAACTAATATTCGCACCC+AGG 0.669218 3_2:+82691210 Msa0430820:CDS
AGCAGTGTGATTGAGAAAGG+AGG 0.675394 3_2:+82694391 Msa0430820:CDS
GATGTCCCTGAAACCATAGA+GGG 0.678856 3_2:+82691727 Msa0430820:CDS
GGTACTAATAGAGCAAGGGG+TGG 0.680045 3_2:+82690477 Msa0430820:CDS
AACAGGGATACCAGTCCAGG+CGG 0.697211 3_2:-82693849 None:intergenic
CGAGGGTGGTCAATTGACTG+AGG 0.703199 3_2:+82694198 Msa0430820:CDS
GTATAACCAACATATCCCGG+AGG 0.777636 3_2:-82694175 None:intergenic
TGGCTCAAGAGGAAGCTAGG+CGG 0.788911 3_2:+82690571 Msa0430820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATAAATATACGTAAA+CGG - chr3_2:82691259-82691278 None:intergenic 10.0%
!! AAAAAATTAAAAATTCTGAA+TGG + chr3_2:82692503-82692522 Msa0430820:intron 10.0%
!!! TTTTTTTTTTTTAATAGTTC+TGG + chr3_2:82692924-82692943 Msa0430820:intron 10.0%
!!! ATTGTTTACAAAATTTATTT+TGG + chr3_2:82693068-82693087 Msa0430820:intron 10.0%
!! AAAAATGAAATGTTGAAAAT+GGG - chr3_2:82692467-82692486 None:intergenic 15.0%
!! AAAAAATGAAATGTTGAAAA+TGG - chr3_2:82692468-82692487 None:intergenic 15.0%
!!! AAATTTTGTAAACAATTCAA+AGG - chr3_2:82693064-82693083 None:intergenic 15.0%
!! ACATAATATTAAGCTAATTA+AGG + chr3_2:82693529-82693548 Msa0430820:intron 15.0%
!!! TAAAAAATCTTTGAAATGTT+GGG - chr3_2:82695062-82695081 None:intergenic 15.0%
!! CTAAAGCTTAAAATAAAAAT+AGG - chr3_2:82695137-82695156 None:intergenic 15.0%
!! ATATGAAAAACGACATATAA+AGG - chr3_2:82690841-82690860 None:intergenic 20.0%
!!! TTTGTTTACGTTTGAAATTT+TGG + chr3_2:82691072-82691091 Msa0430820:intron 20.0%
!! AAAAATAATCCTTGTCTTAT+CGG + chr3_2:82691643-82691662 Msa0430820:CDS 20.0%
!!! TGGAATTTTAGCATATTTTA+TGG + chr3_2:82691942-82691961 Msa0430820:intron 20.0%
!! AAACCATACAAATATTGAAA+GGG + chr3_2:82692745-82692764 Msa0430820:CDS 20.0%
!! TTATTATTAAGATAAACAGC+AGG - chr3_2:82693156-82693175 None:intergenic 20.0%
!!! TAACATTAACCAACATTTTT+AGG + chr3_2:82693476-82693495 Msa0430820:intron 20.0%
!!! CTAAAAAATCTTTGAAATGT+TGG - chr3_2:82695063-82695082 None:intergenic 20.0%
! ACAATTTAAGAATCATGTCT+AGG + chr3_2:82690229-82690248 Msa0430820:CDS 25.0%
! CAATTTAAGAATCATGTCTA+GGG + chr3_2:82690230-82690249 Msa0430820:CDS 25.0%
! TTAGAATGAAAATCTTGTCT+GGG - chr3_2:82690441-82690460 None:intergenic 25.0%
! AAGTTGAAAAGATAATTGGA+AGG + chr3_2:82690712-82690731 Msa0430820:CDS 25.0%
! AGTTGAAAAGATAATTGGAA+GGG + chr3_2:82690713-82690732 Msa0430820:CDS 25.0%
! ATCAATCAAAGCAATAATCA+AGG - chr3_2:82690935-82690954 None:intergenic 25.0%
!! TTTCTGCTCTTTCTTTTATT+AGG + chr3_2:82691029-82691048 Msa0430820:intron 25.0%
!!! TGAAATTTTGGCTTACATTT+TGG + chr3_2:82691084-82691103 Msa0430820:intron 25.0%
! TTTCTAGGTCACAATTATAT+CGG + chr3_2:82691109-82691128 Msa0430820:intron 25.0%
! ACATAAATTAAGATGAAAGC+AGG - chr3_2:82691287-82691306 None:intergenic 25.0%
!! GATAAGACAAGGATTATTTT+TGG - chr3_2:82691644-82691663 None:intergenic 25.0%
! AAAATAATCCTTGTCTTATC+GGG + chr3_2:82691644-82691663 Msa0430820:CDS 25.0%
!! TCTAGTTTACAAATTGTTGT+TGG + chr3_2:82691780-82691799 Msa0430820:intron 25.0%
!! TTTACAAATTGTTGTTGGTT+TGG + chr3_2:82691785-82691804 Msa0430820:intron 25.0%
! TAAACACAACATTACAACAA+AGG + chr3_2:82691897-82691916 Msa0430820:intron 25.0%
! AAACACAACATTACAACAAA+GGG + chr3_2:82691898-82691917 Msa0430820:intron 25.0%
!!! CTGTTTTAAGTTCTTAGATA+TGG + chr3_2:82691922-82691941 Msa0430820:intron 25.0%
! TTGAAACTTCAGCAAATATA+TGG - chr3_2:82692357-82692376 None:intergenic 25.0%
!! GAAGTTTCAATAATTAGCTT+TGG + chr3_2:82692367-82692386 Msa0430820:intron 25.0%
! TAAATACTTATGCAGTGTAT+AGG + chr3_2:82692624-82692643 Msa0430820:intron 25.0%
! GAAACCATACAAATATTGAA+AGG + chr3_2:82692744-82692763 Msa0430820:CDS 25.0%
! TCTGGTATTGTATGTTTAAA+TGG + chr3_2:82692995-82693014 Msa0430820:intron 25.0%
! CTGGTATTGTATGTTTAAAT+GGG + chr3_2:82692996-82693015 Msa0430820:intron 25.0%
!! AAATTCCAAAAGATTGACTT+TGG - chr3_2:82693032-82693051 None:intergenic 25.0%
! ATCAAGAATTTGAAAAGGTA+AGG + chr3_2:82693429-82693448 Msa0430820:intron 25.0%
! GCAAGCTAAATCTTAAATTA+TGG - chr3_2:82693455-82693474 None:intergenic 25.0%
! GTTAAGTATCCTAAAAATGT+TGG - chr3_2:82693488-82693507 None:intergenic 25.0%
! ATGTAATCTCGTATGAAAAA+AGG - chr3_2:82693513-82693532 None:intergenic 25.0%
!!! CTCCAAATTCTTTTACTTTT+TGG + chr3_2:82693640-82693659 Msa0430820:intron 25.0%
! AGCCAAAAAGTAAAAGAATT+TGG - chr3_2:82693645-82693664 None:intergenic 25.0%
!!! ACTTTTTGGCTAATAATTAG+CGG + chr3_2:82693654-82693673 Msa0430820:intron 25.0%
! AGCACTTATACAAAAAAACA+AGG + chr3_2:82693751-82693770 Msa0430820:CDS 25.0%
! CTTATAATGACATCAAATGT+TGG + chr3_2:82694367-82694386 Msa0430820:CDS 25.0%
!! ATGTACATAGAGCTTTTAAT+TGG + chr3_2:82694926-82694945 Msa0430820:three_prime_UTR 25.0%
! ATTGGATTATTGTTAGTGTA+AGG + chr3_2:82694944-82694963 Msa0430820:three_prime_UTR 25.0%
!! TACTTTGCTTTGTTAGATAT+GGG - chr3_2:82694978-82694997 None:intergenic 25.0%
! ATATCTAACAAAGCAAAGTA+GGG + chr3_2:82694978-82694997 Msa0430820:three_prime_UTR 25.0%
!!! TTCAAAGATTTTTTAGTGCT+AGG + chr3_2:82695067-82695086 Msa0430820:three_prime_UTR 25.0%
! ATGCGATATGTATTAAGAAA+TGG - chr3_2:82695169-82695188 None:intergenic 25.0%
AGGCATGTCAATAATAACAA+TGG + chr3_2:82690297-82690316 Msa0430820:CDS 30.0%
ATAGAATCCAAAGAGTTCAA+AGG - chr3_2:82690411-82690430 None:intergenic 30.0%
CTTAGAATGAAAATCTTGTC+TGG - chr3_2:82690442-82690461 None:intergenic 30.0%
! CAGACAAGATTTTCATTCTA+AGG + chr3_2:82690440-82690459 Msa0430820:CDS 30.0%
!! CAAATTTTGTTGGGTCTTAT+TGG + chr3_2:82690621-82690640 Msa0430820:CDS 30.0%
GTGGAAGTTGAAAAGATAAT+TGG + chr3_2:82690708-82690727 Msa0430820:CDS 30.0%
GTTGAAAAGATAATTGGAAG+GGG + chr3_2:82690714-82690733 Msa0430820:CDS 30.0%
TATTGCTTTGATTGATCTGA+TGG + chr3_2:82690939-82690958 Msa0430820:intron 30.0%
! TCTTTCTTTTATTAGGAGTG+TGG + chr3_2:82691036-82691055 Msa0430820:intron 30.0%
!!! GCTTACATTTTGGAATTTCT+AGG + chr3_2:82691094-82691113 Msa0430820:intron 30.0%
AATCTGTCACTAAGAAAACT+AGG - chr3_2:82691477-82691496 None:intergenic 30.0%
!! TCCTCTAAAATCAAAATCCT+AGG + chr3_2:82691549-82691568 Msa0430820:intron 30.0%
!! CCTCTAAAATCAAAATCCTA+GGG + chr3_2:82691550-82691569 Msa0430820:intron 30.0%
ATCAAAATCCTAGGGAAAAT+TGG + chr3_2:82691558-82691577 Msa0430820:intron 30.0%
AAATAATCCTTGTCTTATCG+GGG + chr3_2:82691645-82691664 Msa0430820:CDS 30.0%
TAATGTTGTGTTTAGTTGTG+TGG - chr3_2:82691891-82691910 None:intergenic 30.0%
TAAATATCGTGGAGAATTTG+AGG + chr3_2:82692043-82692062 Msa0430820:CDS 30.0%
GGAGAGATTGAAAAAACTAA+TGG + chr3_2:82692064-82692083 Msa0430820:CDS 30.0%
GAGATTGAAAAAACTAATGG+AGG + chr3_2:82692067-82692086 Msa0430820:CDS 30.0%
!!! AGTATTTCACTTTTGACTTG+CGG + chr3_2:82692323-82692342 Msa0430820:intron 30.0%
! GTTGAAAATGGGTTTAACTT+CGG - chr3_2:82692456-82692475 None:intergenic 30.0%
GCACAGCTATATATATTCTT+CGG - chr3_2:82692559-82692578 None:intergenic 30.0%
TACTTAAGAGATAGAAGTTG+TGG - chr3_2:82692596-82692615 None:intergenic 30.0%
AAGCCCTTTCAATATTTGTA+TGG - chr3_2:82692751-82692770 None:intergenic 30.0%
AGCTGTCATATCAATATATC+AGG + chr3_2:82692835-82692854 Msa0430820:CDS 30.0%
! TTTGACCAAAGTCAATCTTT+TGG + chr3_2:82693024-82693043 Msa0430820:intron 30.0%
TTATTAAGATAAACAGCAGG+TGG - chr3_2:82693153-82693172 None:intergenic 30.0%
!! ATCAAATCTATAGCTTTGTC+AGG - chr3_2:82693207-82693226 None:intergenic 30.0%
TCGCAATCAAGAATTTGAAA+AGG + chr3_2:82693424-82693443 Msa0430820:CDS 30.0%
TAATCTCGTATGAAAAAAGG+TGG - chr3_2:82693510-82693529 None:intergenic 30.0%
TTTGTTTGAAGACATTGTAG+TGG + chr3_2:82693596-82693615 Msa0430820:intron 30.0%
!!! CTTTTTGGCTAATAATTAGC+GGG + chr3_2:82693655-82693674 Msa0430820:intron 30.0%
TGGTACCTTAATTTCTGAAT+AGG + chr3_2:82693682-82693701 Msa0430820:intron 30.0%
GGATAAAGAAATGGATCTTA+AGG + chr3_2:82693718-82693737 Msa0430820:CDS 30.0%
! TCAAAGAGTACAACAGTATA+GGG - chr3_2:82694238-82694257 None:intergenic 30.0%
! ATCAAAGAGTACAACAGTAT+AGG - chr3_2:82694239-82694258 None:intergenic 30.0%
TTATAACCGAATCAAAAGCT+TGG + chr3_2:82694459-82694478 Msa0430820:CDS 30.0%
! TGGATGAAATGATTGTTTTC+AGG + chr3_2:82694530-82694549 Msa0430820:CDS 30.0%
GAAGGTTATAATCCTAGTTA+TGG + chr3_2:82694676-82694695 Msa0430820:CDS 30.0%
! CTACTTTGCTTTGTTAGATA+TGG - chr3_2:82694979-82694998 None:intergenic 30.0%
CATATCTAACAAAGCAAAGT+AGG + chr3_2:82694977-82694996 Msa0430820:three_prime_UTR 30.0%
TCACATTATGTATTGCCTAA+GGG + chr3_2:82695102-82695121 Msa0430820:three_prime_UTR 30.0%
!! AAGAATCATGTCTAGGGTTT+TGG + chr3_2:82690236-82690255 Msa0430820:CDS 35.0%
ATTACGTCCTTTGAACTCTT+TGG + chr3_2:82690401-82690420 Msa0430820:CDS 35.0%
AGATTGGTACTAATAGAGCA+AGG + chr3_2:82690472-82690491 Msa0430820:CDS 35.0%
GATTGGTACTAATAGAGCAA+GGG + chr3_2:82690473-82690492 Msa0430820:CDS 35.0%
ATTGGTACTAATAGAGCAAG+GGG + chr3_2:82690474-82690493 Msa0430820:CDS 35.0%
AGCGATCAAAGTTATTATGC+TGG + chr3_2:82690551-82690570 Msa0430820:CDS 35.0%
! GGAACAGAGCAAATTTTGTT+GGG + chr3_2:82690612-82690631 Msa0430820:CDS 35.0%
!! TGCTAAGGTTCTAAAGTCTA+TGG + chr3_2:82690662-82690681 Msa0430820:CDS 35.0%
!! GCTAAGGTTCTAAAGTCTAT+GGG + chr3_2:82690663-82690682 Msa0430820:CDS 35.0%
TATGCTATCACTTACCAAGT+TGG - chr3_2:82690818-82690837 None:intergenic 35.0%
AGCAATAATCAAGGCATGTT+TGG - chr3_2:82690926-82690945 None:intergenic 35.0%
!! CAAATTTTCAAGAACACGTG+CGG - chr3_2:82691182-82691201 None:intergenic 35.0%
GCACGTGTTCTTGAAAATTT+GGG + chr3_2:82691181-82691200 Msa0430820:CDS 35.0%
! TGAGAACATAATACTAGCCT+GGG - chr3_2:82691230-82691249 None:intergenic 35.0%
ATGAGAACATAATACTAGCC+TGG - chr3_2:82691231-82691250 None:intergenic 35.0%
TAATAGCAAGATGCCAACTT+TGG + chr3_2:82691401-82691420 Msa0430820:CDS 35.0%
!!! CCCTAGGATTTTGATTTTAG+AGG - chr3_2:82691553-82691572 None:intergenic 35.0%
TGAGTAACACGTTCAATTTG+TGG - chr3_2:82691604-82691623 None:intergenic 35.0%
! TGAACGTGTTACTCAAATCT+TGG + chr3_2:82691609-82691628 Msa0430820:CDS 35.0%
! GAACGTGTTACTCAAATCTT+GGG + chr3_2:82691610-82691629 Msa0430820:CDS 35.0%
!! AATTGTTGTTGGTTTGGTTC+AGG + chr3_2:82691791-82691810 Msa0430820:intron 35.0%
!! ATTGTTGTTGGTTTGGTTCA+GGG + chr3_2:82691792-82691811 Msa0430820:intron 35.0%
! AATCTTCTAGAAAGAGTCGA+CGG + chr3_2:82691832-82691851 Msa0430820:intron 35.0%
GTGTGTGTAAGCTTCATAAA+GGG - chr3_2:82691859-82691878 None:intergenic 35.0%
TGTGTGTGTAAGCTTCATAA+AGG - chr3_2:82691860-82691879 None:intergenic 35.0%
AACCTAAATCATGCAGAATG+AGG - chr3_2:82691988-82692007 None:intergenic 35.0%
! CATGATTTAGGTTATAACCC+TGG + chr3_2:82691995-82692014 Msa0430820:intron 35.0%
TTAGGTTATAACCCTGGATA+TGG + chr3_2:82692001-82692020 Msa0430820:intron 35.0%
TAGGTTATAACCCTGGATAT+GGG + chr3_2:82692002-82692021 Msa0430820:intron 35.0%
! ACGCGACATTTTACATAGTA+CGG + chr3_2:82692250-82692269 Msa0430820:intron 35.0%
AAAATTCTGAATGGTCGCTT+TGG + chr3_2:82692512-82692531 Msa0430820:intron 35.0%
CATTGAAAAAGATCCAGCTT+TGG + chr3_2:82692677-82692696 Msa0430820:CDS 35.0%
GTGGAAAACAACAAGATACA+GGG - chr3_2:82693134-82693153 None:intergenic 35.0%
ATAGATTTGATTGACGAAGC+TGG + chr3_2:82693216-82693235 Msa0430820:CDS 35.0%
!! AGAACTGTTGGTTCAGAAAA+TGG - chr3_2:82693288-82693307 None:intergenic 35.0%
TCGTCTATTGTTGAGCTAAT+TGG + chr3_2:82693312-82693331 Msa0430820:intron 35.0%
CGTCTATTGTTGAGCTAATT+GGG + chr3_2:82693313-82693332 Msa0430820:intron 35.0%
ACCTTAATTTCTGAATAGGC+TGG + chr3_2:82693686-82693705 Msa0430820:intron 35.0%
TCCAGCCTATTCAGAAATTA+AGG - chr3_2:82693690-82693709 None:intergenic 35.0%
AAAAAACAAGGAGATGAGCA+AGG + chr3_2:82693763-82693782 Msa0430820:CDS 35.0%
CAACTGAGACTTTATCAACA+GGG - chr3_2:82693868-82693887 None:intergenic 35.0%
TCAACTGAGACTTTATCAAC+AGG - chr3_2:82693869-82693888 None:intergenic 35.0%
ACCTTACACAAACGCATTAT+TGG + chr3_2:82693920-82693939 Msa0430820:CDS 35.0%
ACCAATAATGCGTTTGTGTA+AGG - chr3_2:82693924-82693943 None:intergenic 35.0%
TTCAGATCCAAAGTAGTATG+AGG - chr3_2:82694086-82694105 None:intergenic 35.0%
CAACATGATGCTTCAAATTC+TGG + chr3_2:82694288-82694307 Msa0430820:CDS 35.0%
! ATGCTTCAAATTCTGGAAGA+TGG + chr3_2:82694295-82694314 Msa0430820:CDS 35.0%
! TGCTTCAAATTCTGGAAGAT+GGG + chr3_2:82694296-82694315 Msa0430820:CDS 35.0%
TTTCAGGCAACTTACAAAAC+TGG + chr3_2:82694546-82694565 Msa0430820:CDS 35.0%
ACTTACAAAACTGGAGGTTA+AGG + chr3_2:82694555-82694574 Msa0430820:CDS 35.0%
GATAGCTGATATAATGCTGA+AGG + chr3_2:82694579-82694598 Msa0430820:CDS 35.0%
! AAGAGCTATAATGCGACTTT+TGG + chr3_2:82694714-82694733 Msa0430820:CDS 35.0%
CTTGCTAGAGAGATTAAAGA+GGG + chr3_2:82694760-82694779 Msa0430820:CDS 35.0%
ACAAGTACACAATGTTACAC+AGG - chr3_2:82694877-82694896 None:intergenic 35.0%
ATCAACAGCTAAACAGACTA+TGG - chr3_2:82694908-82694927 None:intergenic 35.0%
TAACAAAGCAAAGTAGGGAA+TGG + chr3_2:82694983-82695002 Msa0430820:three_prime_UTR 35.0%
CTCACATTATGTATTGCCTA+AGG + chr3_2:82695101-82695120 Msa0430820:three_prime_UTR 35.0%
TACATCATTCTGACAGACCT+AGG - chr3_2:82690339-82690358 None:intergenic 40.0%
!! AGTTATTATGCTGGCTCAAG+AGG + chr3_2:82690560-82690579 Msa0430820:CDS 40.0%
! CGGAACAGAGCAAATTTTGT+TGG + chr3_2:82690611-82690630 Msa0430820:CDS 40.0%
!! TTGTTGGGTCTTATTGGTGA+AGG + chr3_2:82690627-82690646 Msa0430820:CDS 40.0%
AAGATAATTGGAAGGGGTAG+TGG + chr3_2:82690720-82690739 Msa0430820:CDS 40.0%
CGCACGTGTTCTTGAAAATT+TGG + chr3_2:82691180-82691199 Msa0430820:CDS 40.0%
GAACAGGTTATTCGAATGGT+TGG + chr3_2:82691333-82691352 Msa0430820:CDS 40.0%
!! GTTATTCGAATGGTTGGTGA+GGG + chr3_2:82691339-82691358 Msa0430820:CDS 40.0%
! AACAGGATCCAATTTTCCCT+AGG - chr3_2:82691569-82691588 None:intergenic 40.0%
GGAAAATTGGATCCTGTTGT+GGG + chr3_2:82691571-82691590 Msa0430820:CDS 40.0%
ATCACCATTTGCAATCCGTT+GGG - chr3_2:82691710-82691729 None:intergenic 40.0%
AGCCTCATTCTGCATGATTT+AGG + chr3_2:82691983-82692002 Msa0430820:intron 40.0%
AACAAGTAGACCCATATCCA+GGG - chr3_2:82692015-82692034 None:intergenic 40.0%
GTTGCTGGAACTAAATATCG+TGG + chr3_2:82692032-82692051 Msa0430820:CDS 40.0%
!! ACTTCGGTGACTTTGAGTTT+TGG - chr3_2:82692440-82692459 None:intergenic 40.0%
CCTGTATTCATCTAGTGTTG+TGG - chr3_2:82692652-82692671 None:intergenic 40.0%
CCACAACACTAGATGAATAC+AGG + chr3_2:82692649-82692668 Msa0430820:CDS 40.0%
!! AAAAAGATCCAGCTTTGGAG+AGG + chr3_2:82692682-82692701 Msa0430820:CDS 40.0%
TGTATGGTTTCACTCACAGT+TGG - chr3_2:82692735-82692754 None:intergenic 40.0%
!! CAAGAGCATCATCGGTATAA+CGG - chr3_2:82692803-82692822 None:intergenic 40.0%
! AAGGCTTGGTTATTGTTGTC+TGG + chr3_2:82692977-82692996 Msa0430820:intron 40.0%
GGTGGAAAACAACAAGATAC+AGG - chr3_2:82693135-82693154 None:intergenic 40.0%
ATAGACGAGACAAGAACTGT+TGG - chr3_2:82693300-82693319 None:intergenic 40.0%
AGAAGCAAGAGGACTTGAAA+AGG + chr3_2:82693364-82693383 Msa0430820:CDS 40.0%
TGAAGTCGCTATAGAACTTC+AGG - chr3_2:82693568-82693587 None:intergenic 40.0%
AGAGCTACGGGATAAAGAAA+TGG + chr3_2:82693709-82693728 Msa0430820:CDS 40.0%
TTGGACTTAAGAACCCTAAC+CGG + chr3_2:82693993-82694012 Msa0430820:CDS 40.0%
GAAAAGATGAAGCTGGCAAT+CGG - chr3_2:82694019-82694038 None:intergenic 40.0%
! ATTGCCAGCTTCATCTTTTC+TGG + chr3_2:82694019-82694038 Msa0430820:CDS 40.0%
! GTAGTATGAGGCCAATGTTT+TGG - chr3_2:82694074-82694093 None:intergenic 40.0%
! ACATTGGCCTCATACTACTT+TGG + chr3_2:82694076-82694095 Msa0430820:CDS 40.0%
GATCTGAAGAAGCCATGATT+CGG + chr3_2:82694098-82694117 Msa0430820:CDS 40.0%
GCTTGACATGAGCGAATTTA+TGG + chr3_2:82694120-82694139 Msa0430820:CDS 40.0%
TCGGTATAACCAACATATCC+CGG - chr3_2:82694181-82694200 None:intergenic 40.0%
! GGATATGTTGGTTATACCGA+GGG + chr3_2:82694181-82694200 Msa0430820:CDS 40.0%
AGAGTACAACAGTATAGGGA+CGG - chr3_2:82694234-82694253 None:intergenic 40.0%
CATGTTGAAGACATCAGGAT+GGG - chr3_2:82694275-82694294 None:intergenic 40.0%
TCATGTTGAAGACATCAGGA+TGG - chr3_2:82694276-82694295 None:intergenic 40.0%
AGCATCATGTTGAAGACATC+AGG - chr3_2:82694280-82694299 None:intergenic 40.0%
! TTCAAATTCTGGAAGATGGG+AGG + chr3_2:82694299-82694318 Msa0430820:CDS 40.0%
TGACCTTGACTATGATGAGA+AGG + chr3_2:82694429-82694448 Msa0430820:CDS 40.0%
TGTCCTTCTCATCATAGTCA+AGG - chr3_2:82694435-82694454 None:intergenic 40.0%
!! AAAGTATTGCTTCAGCTCCT+CGG - chr3_2:82694488-82694507 None:intergenic 40.0%
AGGAGCTGAAGCAATACTTT+AGG + chr3_2:82694488-82694507 Msa0430820:CDS 40.0%
TTAGGCCAGAGTTCTTGAAT+AGG + chr3_2:82694506-82694525 Msa0430820:CDS 40.0%
AGCTGATATAATGCTGAAGG+AGG + chr3_2:82694582-82694601 Msa0430820:CDS 40.0%
AACCAAAGAGATTGAGCTCT+CGG + chr3_2:82694621-82694640 Msa0430820:CDS 40.0%
TATAGCTCTTCTTAGAGGTC+TGG - chr3_2:82694704-82694723 None:intergenic 40.0%
CGCATTATAGCTCTTCTTAG+AGG - chr3_2:82694709-82694728 None:intergenic 40.0%
! GCTTGCTAGAGAGATTAAAG+AGG + chr3_2:82694759-82694778 Msa0430820:CDS 40.0%
!! ATAGTGGATGCTGATTCTGA+TGG + chr3_2:82694793-82694812 Msa0430820:CDS 40.0%
GGAAATGTGATTGTGCTCAA+TGG + chr3_2:82694814-82694833 Msa0430820:CDS 40.0%
ATTGTGCTCAATGGTAGTAG+TGG + chr3_2:82694823-82694842 Msa0430820:CDS 40.0%
ATGTTACACAGGAAGAGACT+CGG - chr3_2:82694866-82694885 None:intergenic 40.0%
AAGCAAAGTAGGGAATGGTT+CGG + chr3_2:82694988-82695007 Msa0430820:three_prime_UTR 40.0%
AATAGGTTACAGACTCCCTT+AGG - chr3_2:82695120-82695139 None:intergenic 40.0%
ACTGCTACAATGCGAATGTC+TGG + chr3_2:82690369-82690388 Msa0430820:CDS 45.0%
! ATGCGAATGTCTGGTTTCTC+TGG + chr3_2:82690378-82690397 Msa0430820:CDS 45.0%
! TCTAAGGTGCTCACTCAGAT+TGG + chr3_2:82690456-82690475 Msa0430820:CDS 45.0%
AGCCATGTTTGAGCGTTTCA+CGG + chr3_2:82690524-82690543 Msa0430820:CDS 45.0%
!! ATTGGTGAAGGCACTGGTAT+TGG + chr3_2:82690639-82690658 Msa0430820:CDS 45.0%
TGAGAGCTCCAAAACTCTCT+TGG - chr3_2:82690781-82690800 None:intergenic 45.0%
!!! GAGAGTTTTGGAGCTCTCAT+TGG + chr3_2:82690782-82690801 Msa0430820:CDS 45.0%
!!! AGTTTTGGAGCTCTCATTGG+AGG + chr3_2:82690785-82690804 Msa0430820:CDS 45.0%
! AAAGAGCAGAAAGCGCAGAA+AGG - chr3_2:82691021-82691040 None:intergenic 45.0%
!! CTTTTGGGTCTTCTTCGAGA+GGG + chr3_2:82691145-82691164 Msa0430820:CDS 45.0%
TCCAACTAATATTCGCACCC+AGG + chr3_2:82691210-82691229 Msa0430820:CDS 45.0%
AATAACCTGTTCCCCTCAAG+TGG - chr3_2:82691325-82691344 None:intergenic 45.0%
AGGGGAACAGGTTATTCGAA+TGG + chr3_2:82691329-82691348 Msa0430820:intron 45.0%
! GGTTATTCGAATGGTTGGTG+AGG + chr3_2:82691338-82691357 Msa0430820:CDS 45.0%
TAGCAAGATGCCAACTTTGG+AGG + chr3_2:82691404-82691423 Msa0430820:CDS 45.0%
! ATGCCAACTTTGGAGGAGTA+TGG + chr3_2:82691411-82691430 Msa0430820:CDS 45.0%
! CTCTGCTAGCTTGGTCAAAT+TGG - chr3_2:82691439-82691458 None:intergenic 45.0%
CAATTTGACCAAGCTAGCAG+AGG + chr3_2:82691437-82691456 Msa0430820:CDS 45.0%
GGGAAAATTGGATCCTGTTG+TGG + chr3_2:82691570-82691589 Msa0430820:intron 45.0%
AATTGGATCCTGTTGTGGGT+AGG + chr3_2:82691575-82691594 Msa0430820:CDS 45.0%
GGAAAGACAGCTATTGCTGA+AGG + chr3_2:82691679-82691698 Msa0430820:CDS 45.0%
CATCACCATTTGCAATCCGT+TGG - chr3_2:82691711-82691730 None:intergenic 45.0%
TGATGTCCCTGAAACCATAG+AGG + chr3_2:82691726-82691745 Msa0430820:CDS 45.0%
GATGTCCCTGAAACCATAGA+GGG + chr3_2:82691727-82691746 Msa0430820:CDS 45.0%
GCTTTCCCTCTATGGTTTCA+GGG - chr3_2:82691735-82691754 None:intergenic 45.0%
TGCTTTCCCTCTATGGTTTC+AGG - chr3_2:82691736-82691755 None:intergenic 45.0%
TGAAACCATAGAGGGAAAGC+AGG + chr3_2:82691735-82691754 Msa0430820:CDS 45.0%
GTTGTGTTTAGTTGTGTGGC+TGG - chr3_2:82691887-82691906 None:intergenic 45.0%
CAACAAGTAGACCCATATCC+AGG - chr3_2:82692016-82692035 None:intergenic 45.0%
! GATATGGGTCTACTTGTTGC+TGG + chr3_2:82692017-82692036 Msa0430820:CDS 45.0%
GATGAAGTGCACACTCTCAT+TGG + chr3_2:82692125-82692144 Msa0430820:CDS 45.0%
TTGAAACCAGCTCTTGCTAG+AGG + chr3_2:82692188-82692207 Msa0430820:CDS 45.0%
TCTTGCTAGAGGTGAACTAC+AGG + chr3_2:82692199-82692218 Msa0430820:CDS 45.0%
!! AGCAGCTACAAGAGCATCAT+CGG - chr3_2:82692811-82692830 None:intergenic 45.0%
TGCATGTTGAAGTCGAACTC+GGG - chr3_2:82693244-82693263 None:intergenic 45.0%
GTGCATGTTGAAGTCGAACT+CGG - chr3_2:82693245-82693264 None:intergenic 45.0%
AGTTCGACTTCAACATGCAC+AGG + chr3_2:82693245-82693264 Msa0430820:CDS 45.0%
CAGTTACCTGAAGAAGCAAG+AGG + chr3_2:82693353-82693372 Msa0430820:intron 45.0%
TCAAGTCCTCTTGCTTCTTC+AGG - chr3_2:82693362-82693381 None:intergenic 45.0%
AGCAAGAGGACTTGAAAAGG+AGG + chr3_2:82693367-82693386 Msa0430820:CDS 45.0%
GAGGACTTGAAAAGGAGGTT+AGG + chr3_2:82693372-82693391 Msa0430820:CDS 45.0%
GGAGGTTAGGCAGATAGTTA+AGG + chr3_2:82693385-82693404 Msa0430820:CDS 45.0%
!! GCTAATAATTAGCGGGCTGA+TGG + chr3_2:82693662-82693681 Msa0430820:intron 45.0%
TACAACATATTGTTGCCGCC+TGG + chr3_2:82693834-82693853 Msa0430820:CDS 45.0%
ATCTGATCGCCTTCTCAAGA+TGG + chr3_2:82693892-82693911 Msa0430820:CDS 45.0%
AGGTCTCTTCCATCTTGAGA+AGG - chr3_2:82693904-82693923 None:intergenic 45.0%
TCTTAAGTCCAACACGAGCT+CGG - chr3_2:82693985-82694004 None:intergenic 45.0%
!! TTCATCTTTTCTGGCCCTAC+TGG + chr3_2:82694028-82694047 Msa0430820:CDS 45.0%
! GTCTGAGTTGGCCAAAACAT+TGG + chr3_2:82694060-82694079 Msa0430820:CDS 45.0%
CACACAGTCTCCAAACTCAT+TGG + chr3_2:82694148-82694167 Msa0430820:CDS 45.0%
!! CAAACTCATTGGTTCACCTC+CGG + chr3_2:82694159-82694178 Msa0430820:CDS 45.0%
!! AAACTCATTGGTTCACCTCC+GGG + chr3_2:82694160-82694179 Msa0430820:CDS 45.0%
GTATAACCAACATATCCCGG+AGG - chr3_2:82694178-82694197 None:intergenic 45.0%
! GGGATATGTTGGTTATACCG+AGG + chr3_2:82694180-82694199 Msa0430820:CDS 45.0%
! TATGTTGGTTATACCGAGGG+TGG + chr3_2:82694184-82694203 Msa0430820:CDS 45.0%
GTCAATTGACTGAGGCAGTT+CGG + chr3_2:82694206-82694225 Msa0430820:CDS 45.0%
TGGGAGGCTAACAGATAGTA+AGG + chr3_2:82694315-82694334 Msa0430820:CDS 45.0%
GGGAGGCTAACAGATAGTAA+GGG + chr3_2:82694316-82694335 Msa0430820:CDS 45.0%
GGAAGCAGTGTGATTGAGAA+AGG + chr3_2:82694388-82694407 Msa0430820:CDS 45.0%
AGCAGTGTGATTGAGAAAGG+AGG + chr3_2:82694391-82694410 Msa0430820:CDS 45.0%
CAAGGTCAAATCCTATGCGA+CGG - chr3_2:82694417-82694436 None:intergenic 45.0%
!! CGGTCACCAAGCTTTTGATT+CGG - chr3_2:82694468-82694487 None:intergenic 45.0%
! AATCAAAAGCTTGGTGACCG+AGG + chr3_2:82694468-82694487 Msa0430820:CDS 45.0%
TCCAGCCTATTCAAGAACTC+TGG - chr3_2:82694514-82694533 None:intergenic 45.0%
CAGGCAACTTACAAAACTGG+AGG + chr3_2:82694549-82694568 Msa0430820:CDS 45.0%
TCTCGGTGACAGAGAGATTT+AGG + chr3_2:82694638-82694657 Msa0430820:CDS 45.0%
CTCGGTGACAGAGAGATTTA+GGG + chr3_2:82694639-82694658 Msa0430820:CDS 45.0%
AGAGGGTGACTCTGTTATAG+TGG + chr3_2:82694777-82694796 Msa0430820:CDS 45.0%
AGAGACTCGGGCAATGAATT+TGG - chr3_2:82694853-82694872 None:intergenic 45.0%
TGTTACACAGGAAGAGACTC+GGG - chr3_2:82694865-82694884 None:intergenic 45.0%
AGCAAAGTAGGGAATGGTTC+GGG + chr3_2:82694989-82695008 Msa0430820:three_prime_UTR 45.0%
GCACAATCGATTAACGTCCC+CGG + chr3_2:82690258-82690277 Msa0430820:CDS 50.0%
AGACCTAGGTCTTGATCTCG+CGG - chr3_2:82690325-82690344 None:intergenic 50.0%
GGTACTAATAGAGCAAGGGG+TGG + chr3_2:82690477-82690496 Msa0430820:CDS 50.0%
AATAGAGCAAGGGGTGGTAG+AGG + chr3_2:82690483-82690502 Msa0430820:CDS 50.0%
CTCCGTGAAACGCTCAAACA+TGG - chr3_2:82690529-82690548 None:intergenic 50.0%
! CGGCTGGGTCACAATTTTGT+CGG + chr3_2:82690591-82690610 Msa0430820:CDS 50.0%
!! GGTCTTATTGGTGAAGGCAC+TGG + chr3_2:82690633-82690652 Msa0430820:CDS 50.0%
!! AGGCACTGGTATTGGTGCTA+AGG + chr3_2:82690647-82690666 Msa0430820:CDS 50.0%
TAACCTGAAAGACTCTCGCG+TGG + chr3_2:82690689-82690708 Msa0430820:CDS 50.0%
TCCAAAACTCTCTTGGCACG+CGG - chr3_2:82690774-82690793 None:intergenic 50.0%
!! GGATCTGAGCACCTGCTTTT+GGG + chr3_2:82691130-82691149 Msa0430820:CDS 50.0%
CTCGAAGAAGACCCAAAAGC+AGG - chr3_2:82691144-82691163 None:intergenic 50.0%
!! GCTTTTGGGTCTTCTTCGAG+AGG + chr3_2:82691144-82691163 Msa0430820:CDS 50.0%
GCCTGGGTGCGAATATTAGT+TGG - chr3_2:82691214-82691233 None:intergenic 50.0%
TGTGTTTGCGCTCCACTTGA+GGG + chr3_2:82691310-82691329 Msa0430820:intron 50.0%
!! GTGAGGGTGCTGACAATGTT+GGG + chr3_2:82691355-82691374 Msa0430820:CDS 50.0%
!! TGAGGGTGCTGACAATGTTG+GGG + chr3_2:82691356-82691375 Msa0430820:CDS 50.0%
GACAATGTTGGGGCTACTGT+TGG + chr3_2:82691366-82691385 Msa0430820:CDS 50.0%
GTGCCATACTCCTCCAAAGT+TGG - chr3_2:82691417-82691436 None:intergenic 50.0%
TTTGACCAAGCTAGCAGAGG+AGG + chr3_2:82691440-82691459 Msa0430820:CDS 50.0%
AGTTACCTCCTCTGCTAGCT+TGG - chr3_2:82691448-82691467 None:intergenic 50.0%
ATAGCTGTCTTTCCGACACC+AGG - chr3_2:82691673-82691692 None:intergenic 50.0%
ACCATAGAGGGAAAGCAGGT+TGG + chr3_2:82691739-82691758 Msa0430820:intron 50.0%
ACCAACCTGCTTTCCCTCTA+TGG - chr3_2:82691743-82691762 None:intergenic 50.0%
AGCTGAAGGGGCAATTGATG+CGG + chr3_2:82692157-82692176 Msa0430820:CDS 50.0%
AGTTCACCTCTAGCAAGAGC+TGG - chr3_2:82692197-82692216 None:intergenic 50.0%
! TCTGAATGGTCGCTTTGGAC+TGG + chr3_2:82692517-82692536 Msa0430820:intron 50.0%
TGGAATCTCCTCTCCAAAGC+TGG - chr3_2:82692693-82692712 None:intergenic 50.0%
!! GTTGGCTCTGGCACTTTAAC+TGG - chr3_2:82692717-82692736 None:intergenic 50.0%
! GTTTCACTCACAGTTGGCTC+TGG - chr3_2:82692729-82692748 None:intergenic 50.0%
! CATCGGTATAACGGAGCTTG+TGG - chr3_2:82692794-82692813 None:intergenic 50.0%
CATGTTTAACCCCGCGTAGT+GGG + chr3_2:82692952-82692971 Msa0430820:intron 50.0%
CTGAATAGGCTGGAGAGCTA+CGG + chr3_2:82693696-82693715 Msa0430820:intron 50.0%
TGAATAGGCTGGAGAGCTAC+GGG + chr3_2:82693697-82693716 Msa0430820:intron 50.0%
ATCAACAGGGATACCAGTCC+AGG - chr3_2:82693855-82693874 None:intergenic 50.0%
AGGGCCAGAAAAGATGAAGC+TGG - chr3_2:82694026-82694045 None:intergenic 50.0%
!! TTTTCTGGCCCTACTGGTGT+GGG + chr3_2:82694034-82694053 Msa0430820:CDS 50.0%
GCTCATGTCAAGCCGAATCA+TGG - chr3_2:82694113-82694132 None:intergenic 50.0%
CGGAGGTGAACCAATGAGTT+TGG - chr3_2:82694161-82694180 None:intergenic 50.0%
CTCAGTCAATTGACCACCCT+CGG - chr3_2:82694200-82694219 None:intergenic 50.0%
GCCAGAGTTCTTGAATAGGC+TGG + chr3_2:82694510-82694529 Msa0430820:CDS 50.0%
CACCGAGAGCTCAATCTCTT+TGG - chr3_2:82694626-82694645 None:intergenic 50.0%
AGAGGTCTGGCACCATAACT+AGG - chr3_2:82694691-82694710 None:intergenic 50.0%
!! GCGACTTTTGGAAGACAGCA+TGG + chr3_2:82694726-82694745 Msa0430820:CDS 50.0%
TCAACTATGCAGCCTATCCC+AGG - chr3_2:82695016-82695035 None:intergenic 50.0%
GATCCGCGAGATCAAGACCT+AGG + chr3_2:82690319-82690338 Msa0430820:CDS 55.0%
!! TGCTGGCTCAAGAGGAAGCT+AGG + chr3_2:82690568-82690587 Msa0430820:CDS 55.0%
TGGCTCAAGAGGAAGCTAGG+CGG + chr3_2:82690571-82690590 Msa0430820:CDS 55.0%
CTTCCACGCGAGAGTCTTTC+AGG - chr3_2:82690695-82690714 None:intergenic 55.0%
CTCTTGGCACGCGGAGTAAA+CGG - chr3_2:82690765-82690784 None:intergenic 55.0%
! TCCGCGTGCCAAGAGAGTTT+TGG + chr3_2:82690770-82690789 Msa0430820:CDS 55.0%
TTGGAGGAAGCTCGCCAACT+TGG + chr3_2:82690801-82690820 Msa0430820:CDS 55.0%
! AGCAGAAAGCGCAGAAAGGC+GGG - chr3_2:82691017-82691036 None:intergenic 55.0%
! GAGCAGAAAGCGCAGAAAGG+CGG - chr3_2:82691018-82691037 None:intergenic 55.0%
! CGGATCTGAGCACCTGCTTT+TGG + chr3_2:82691129-82691148 Msa0430820:CDS 55.0%
GGTCTTCTTCGAGAGGGTGA+GGG + chr3_2:82691151-82691170 Msa0430820:CDS 55.0%
GTGTGTTTGCGCTCCACTTG+AGG + chr3_2:82691309-82691328 Msa0430820:intron 55.0%
GTGTTTGCGCTCCACTTGAG+GGG + chr3_2:82691311-82691330 Msa0430820:intron 55.0%
!! GGTGAGGGTGCTGACAATGT+TGG + chr3_2:82691354-82691373 Msa0430820:CDS 55.0%
CCAGGTTCCCCGATAAGACA+AGG - chr3_2:82691655-82691674 None:intergenic 55.0%
CCTTGTCTTATCGGGGAACC+TGG + chr3_2:82691652-82691671 Msa0430820:CDS 55.0%
CTTATCGGGGAACCTGGTGT+CGG + chr3_2:82691658-82691677 Msa0430820:CDS 55.0%
TTGCTGAAGGTCTCGCCCAA+CGG + chr3_2:82691692-82691711 Msa0430820:CDS 55.0%
!! CTCGCCCAACGGATTGCAAA+TGG + chr3_2:82691703-82691722 Msa0430820:CDS 55.0%
GTGCACACTCTCATTGGAGC+AGG + chr3_2:82692131-82692150 Msa0430820:CDS 55.0%
ATTGGAGCAGGAGCAGCTGA+AGG + chr3_2:82692143-82692162 Msa0430820:CDS 55.0%
TTGGAGCAGGAGCAGCTGAA+GGG + chr3_2:82692144-82692163 Msa0430820:CDS 55.0%
GCTCTGGCACTTTAACTGGC+TGG - chr3_2:82692713-82692732 None:intergenic 55.0%
GCATGTTTAACCCCGCGTAG+TGG + chr3_2:82692951-82692970 Msa0430820:intron 55.0%
! TAACCCCGCGTAGTGGGAAA+AGG + chr3_2:82692958-82692977 Msa0430820:intron 55.0%
! AAGCCTTTTCCCACTACGCG+GGG - chr3_2:82692964-82692983 None:intergenic 55.0%
! CAAGCCTTTTCCCACTACGC+GGG - chr3_2:82692965-82692984 None:intergenic 55.0%
! CCAAGCCTTTTCCCACTACG+CGG - chr3_2:82692966-82692985 None:intergenic 55.0%
GATGAGCAAGGCAGAGAGTG+AGG + chr3_2:82693775-82693794 Msa0430820:CDS 55.0%
GAGAGTGAGGCAGGAGATGT+AGG + chr3_2:82693788-82693807 Msa0430820:CDS 55.0%
CATATTGTTGCCGCCTGGAC+TGG + chr3_2:82693839-82693858 Msa0430820:CDS 55.0%
AACAGGGATACCAGTCCAGG+CGG - chr3_2:82693852-82693871 None:intergenic 55.0%
TAAGTCCAACACGAGCTCGG+CGG - chr3_2:82693982-82694001 None:intergenic 55.0%
AGATGAAGCTGGCAATCGGC+CGG - chr3_2:82694015-82694034 None:intergenic 55.0%
!! CTTTTCTGGCCCTACTGGTG+TGG + chr3_2:82694033-82694052 Msa0430820:CDS 55.0%
! TTTCTGGCCCTACTGGTGTG+GGG + chr3_2:82694035-82694054 Msa0430820:CDS 55.0%
CAGACTTCCCCACACCAGTA+GGG - chr3_2:82694045-82694064 None:intergenic 55.0%
TCAGACTTCCCCACACCAGT+AGG - chr3_2:82694046-82694065 None:intergenic 55.0%
TGGTGTGGGGAAGTCTGAGT+TGG + chr3_2:82694048-82694067 Msa0430820:CDS 55.0%
GGTTCACCTCCGGGATATGT+TGG + chr3_2:82694169-82694188 Msa0430820:CDS 55.0%
CGAGGGTGGTCAATTGACTG+AGG + chr3_2:82694198-82694217 Msa0430820:CDS 55.0%
! TAGGGAATGGTTCGGGACCT+GGG + chr3_2:82694996-82695015 Msa0430820:three_prime_UTR 55.0%
! AATGGTTCGGGACCTGGGAT+AGG + chr3_2:82695001-82695020 Msa0430820:three_prime_UTR 55.0%
GATTAACGTCCCCGGCCTAG+TGG + chr3_2:82690266-82690285 Msa0430820:CDS 60.0%
CATGCCTTCGACCAGCCACT+AGG - chr3_2:82690284-82690303 None:intergenic 60.0%
TCAAGAGGAAGCTAGGCGGC+TGG + chr3_2:82690575-82690594 Msa0430820:CDS 60.0%
CAAGAGGAAGCTAGGCGGCT+GGG + chr3_2:82690576-82690595 Msa0430820:CDS 60.0%
GGGTCTTCTTCGAGAGGGTG+AGG + chr3_2:82691150-82691169 Msa0430820:CDS 60.0%
TCTTCGAGAGGGTGAGGGTG+TGG + chr3_2:82691156-82691175 Msa0430820:CDS 60.0%
!! GTTGGGGCTACTGTTGGCTC+TGG + chr3_2:82691372-82691391 Msa0430820:CDS 60.0%
TGTGGCTGCCTACCCACAAC+AGG - chr3_2:82691586-82691605 None:intergenic 60.0%
TGGAGCAGGAGCAGCTGAAG+GGG + chr3_2:82692145-82692164 Msa0430820:CDS 60.0%
! CCGCGTAGTGGGAAAAGGCT+TGG + chr3_2:82692963-82692982 Msa0430820:intron 60.0%
AGCAAGGCAGAGAGTGAGGC+AGG + chr3_2:82693779-82693798 Msa0430820:CDS 60.0%
TCGGCGGATAGCACGGCTAA+TGG - chr3_2:82693966-82693985 None:intergenic 60.0%
AGCTGGCAATCGGCCGGTTA+GGG - chr3_2:82694009-82694028 None:intergenic 60.0%
AAGCTGGCAATCGGCCGGTT+AGG - chr3_2:82694010-82694029 None:intergenic 60.0%
GAGAAAGGAGGCCGTCGCAT+AGG + chr3_2:82694403-82694422 Msa0430820:CDS 60.0%
! GTAGGGAATGGTTCGGGACC+TGG + chr3_2:82694995-82695014 Msa0430820:three_prime_UTR 60.0%
TTCGACCAGCCACTAGGCCG+GGG - chr3_2:82690278-82690297 None:intergenic 65.0%
CTTCGACCAGCCACTAGGCC+GGG - chr3_2:82690279-82690298 None:intergenic 65.0%
CCTTCGACCAGCCACTAGGC+CGG - chr3_2:82690280-82690299 None:intergenic 65.0%
GCGCTCCACTTGAGGGGAAC+AGG + chr3_2:82691317-82691336 Msa0430820:intron 65.0%
CACGAGCTCGGCGGATAGCA+CGG - chr3_2:82693973-82693992 None:intergenic 65.0%
GCTATCCGCCGAGCTCGTGT+TGG + chr3_2:82693974-82693993 Msa0430820:CDS 65.0%
AACGTCCCCGGCCTAGTGGC+TGG + chr3_2:82690270-82690289 Msa0430820:CDS 70.0%
! CCGGCCTAGTGGCTGGTCGA+AGG + chr3_2:82690277-82690296 Msa0430820:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 82690170 82695199 82690170 ID=Msa0430820;Name=Msa0430820
chr3_2 mRNA 82690170 82695199 82690170 ID=Msa0430820-mRNA-1;Parent=Msa0430820;Name=Msa0430820-mRNA-1;_AED=0.09;_eAED=0.09;_QI=46|0.87|0.77|1|1|1|9|317|940
chr3_2 exon 82690170 82690822 82690170 ID=Msa0430820-mRNA-1:exon:22999;Parent=Msa0430820-mRNA-1
chr3_2 exon 82691116 82691235 82691116 ID=Msa0430820-mRNA-1:exon:23000;Parent=Msa0430820-mRNA-1
chr3_2 exon 82691331 82691461 82691331 ID=Msa0430820-mRNA-1:exon:23001;Parent=Msa0430820-mRNA-1
chr3_2 exon 82691571 82691756 82691571 ID=Msa0430820-mRNA-1:exon:23002;Parent=Msa0430820-mRNA-1
chr3_2 exon 82692005 82692220 82692005 ID=Msa0430820-mRNA-1:exon:23003;Parent=Msa0430820-mRNA-1
chr3_2 exon 82692639 82692856 82692639 ID=Msa0430820-mRNA-1:exon:23004;Parent=Msa0430820-mRNA-1
chr3_2 exon 82693191 82693266 82693191 ID=Msa0430820-mRNA-1:exon:23005;Parent=Msa0430820-mRNA-1
chr3_2 exon 82693356 82693445 82693356 ID=Msa0430820-mRNA-1:exon:23006;Parent=Msa0430820-mRNA-1
chr3_2 exon 82693704 82695199 82693704 ID=Msa0430820-mRNA-1:exon:23007;Parent=Msa0430820-mRNA-1
chr3_2 five_prime_UTR 82690170 82690215 82690170 ID=Msa0430820-mRNA-1:five_prime_utr;Parent=Msa0430820-mRNA-1
chr3_2 CDS 82690216 82690822 82690216 ID=Msa0430820-mRNA-1:cds;Parent=Msa0430820-mRNA-1
chr3_2 CDS 82691116 82691235 82691116 ID=Msa0430820-mRNA-1:cds;Parent=Msa0430820-mRNA-1
chr3_2 CDS 82691331 82691461 82691331 ID=Msa0430820-mRNA-1:cds;Parent=Msa0430820-mRNA-1
chr3_2 CDS 82691571 82691756 82691571 ID=Msa0430820-mRNA-1:cds;Parent=Msa0430820-mRNA-1
chr3_2 CDS 82692005 82692220 82692005 ID=Msa0430820-mRNA-1:cds;Parent=Msa0430820-mRNA-1
chr3_2 CDS 82692639 82692856 82692639 ID=Msa0430820-mRNA-1:cds;Parent=Msa0430820-mRNA-1
chr3_2 CDS 82693191 82693266 82693191 ID=Msa0430820-mRNA-1:cds;Parent=Msa0430820-mRNA-1
chr3_2 CDS 82693356 82693445 82693356 ID=Msa0430820-mRNA-1:cds;Parent=Msa0430820-mRNA-1
chr3_2 CDS 82693704 82694882 82693704 ID=Msa0430820-mRNA-1:cds;Parent=Msa0430820-mRNA-1
chr3_2 three_prime_UTR 82694883 82695199 82694883 ID=Msa0430820-mRNA-1:three_prime_utr;Parent=Msa0430820-mRNA-1
Gene Sequence

>Msa0430820

ATGAATGCAGTGAACAATTTAAGAATCATGTCTAGGGTTTTGGCACAATCGATTAACGTCCCCGGCCTAGTGGCTGGTCGAAGGCATGTCAATAATAACAATGGATCCGCGAGATCAAGACCTAGGTCTGTCAGAATGATGTATGCTACACAAACTGCTACAATGCGAATGTCTGGTTTCTCTGGATTACGTCCTTTGAACTCTTTGGATTCTATGTTTAGACCCAGACAAGATTTTCATTCTAAGGTGCTCACTCAGATTGGTACTAATAGAGCAAGGGGTGGTAGAGGTAGCAGATGTGTAACTAGAGCCATGTTTGAGCGTTTCACGGAGAAAGCGATCAAAGTTATTATGCTGGCTCAAGAGGAAGCTAGGCGGCTGGGTCACAATTTTGTCGGAACAGAGCAAATTTTGTTGGGTCTTATTGGTGAAGGCACTGGTATTGGTGCTAAGGTTCTAAAGTCTATGGGAATTAACCTGAAAGACTCTCGCGTGGAAGTTGAAAAGATAATTGGAAGGGGTAGTGGTTTTGTCGCTGTTGAGATTCCGTTTACTCCGCGTGCCAAGAGAGTTTTGGAGCTCTCATTGGAGGAAGCTCGCCAACTTGGTCACAATTATATCGGATCTGAGCACCTGCTTTTGGGTCTTCTTCGAGAGGGTGAGGGTGTGGCCGCACGTGTTCTTGAAAATTTGGGTGCTGATCCAACTAATATTCGCACCCAGGCTAGGGAACAGGTTATTCGAATGGTTGGTGAGGGTGCTGACAATGTTGGGGCTACTGTTGGCTCTGGAAGTAGTAATAGCAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACCAAGCTAGCAGAGGAGGGAAAATTGGATCCTGTTGTGGGTAGGCAGCCACAAATTGAACGTGTTACTCAAATCTTGGGTCGTCGCACCAAAAATAATCCTTGTCTTATCGGGGAACCTGGTGTCGGAAAGACAGCTATTGCTGAAGGTCTCGCCCAACGGATTGCAAATGGTGATGTCCCTGAAACCATAGAGGGAAAGCAGGTTATAACCCTGGATATGGGTCTACTTGTTGCTGGAACTAAATATCGTGGAGAATTTGAGGAGAGATTGAAAAAACTAATGGAGGAAATCAAGCAAAGTGATGAAATAATACTTTTCATAGATGAAGTGCACACTCTCATTGGAGCAGGAGCAGCTGAAGGGGCAATTGATGCGGCAAACATATTGAAACCAGCTCTTGCTAGAGGTGAACTACAGTGTATAGGAGCCACAACACTAGATGAATACAGGAAGCACATTGAAAAAGATCCAGCTTTGGAGAGGAGATTCCAGCCAGTTAAAGTGCCAGAGCCAACTGTGAGTGAAACCATACAAATATTGAAAGGGCTTAGAGAGCGCTATGAGATTCACCACAAGCTCCGTTATACCGATGATGCTCTTGTAGCTGCTGCAGAGCTGTCATATCAATATATCAGTGATCGATTTTTGCCTGACAAAGCTATAGATTTGATTGACGAAGCTGGTTCCCGAGTTCGACTTCAACATGCACAGTTACCTGAAGAAGCAAGAGGACTTGAAAAGGAGGTTAGGCAGATAGTTAAGGAGAAAGATGAAGCTGTTCGCAATCAAGAATTTGAAAAGGCTGGAGAGCTACGGGATAAAGAAATGGATCTTAAGGCTCAGATATCAGCACTTATACAAAAAAACAAGGAGATGAGCAAGGCAGAGAGTGAGGCAGGAGATGTAGGTGCACTTGTGACTGAAGTTGACATACAACATATTGTTGCCGCCTGGACTGGTATCCCTGTTGATAAAGTCTCAGTTGACGAATCTGATCGCCTTCTCAAGATGGAAGAGACCTTACACAAACGCATTATTGGTCAGCATGAAGCAGTAGAAGCCATTAGCCGTGCTATCCGCCGAGCTCGTGTTGGACTTAAGAACCCTAACCGGCCGATTGCCAGCTTCATCTTTTCTGGCCCTACTGGTGTGGGGAAGTCTGAGTTGGCCAAAACATTGGCCTCATACTACTTTGGATCTGAAGAAGCCATGATTCGGCTTGACATGAGCGAATTTATGGAACGACACACAGTCTCCAAACTCATTGGTTCACCTCCGGGATATGTTGGTTATACCGAGGGTGGTCAATTGACTGAGGCAGTTCGGCGCCGTCCCTATACTGTTGTACTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTCTTCAACATGATGCTTCAAATTCTGGAAGATGGGAGGCTAACAGATAGTAAGGGAAGAACTGTCGACTTCAAGAACACACTTCTTATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGCCGTCGCATAGGATTTGACCTTGACTATGATGAGAAGGACAGCAGTTATAACCGAATCAAAAGCTTGGTGACCGAGGAGCTGAAGCAATACTTTAGGCCAGAGTTCTTGAATAGGCTGGATGAAATGATTGTTTTCAGGCAACTTACAAAACTGGAGGTTAAGGAGATAGCTGATATAATGCTGAAGGAGGTGTTCGAGAGACTGAAAACCAAAGAGATTGAGCTCTCGGTGACAGAGAGATTTAGGGAGAGAGTGGTTGACGAAGGTTATAATCCTAGTTATGGTGCCAGACCTCTAAGAAGAGCTATAATGCGACTTTTGGAAGACAGCATGGCTGAGAAGATGCTTGCTAGAGAGATTAAAGAGGGTGACTCTGTTATAGTGGATGCTGATTCTGATGGAAATGTGATTGTGCTCAATGGTAGTAGTGGTGCTCCAAATTCATTGCCCGAGTCTCTTCCTGTGTAA
Protein sequence

>Msa0430820

MNAVNNLRIMSRVLAQSINVPGLVAGRRHVNNNNGSARSRPRSVRMMYATQTATMRMSGFSGLRPLNSLDSMFRPRQDFHSKVLTQIGTNRARGGRGSRCVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIGAKVLKSMGINLKDSRVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQAREQVIRMVGEGADNVGATVGSGSSNSKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKQVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVSETIQILKGLRERYEIHHKLRYTDDALVAAAELSYQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARGLEKEVRQIVKEKDEAVRNQEFEKAGELRDKEMDLKAQISALIQKNKEMSKAESEAGDVGALVTEVDIQHIVAAWTGIPVDKVSVDESDRLLKMEETLHKRIIGQHEAVEAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKTKEIELSVTERFRERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDADSDGNVIVLNGSSGAPNSLPESLPV*