AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0968730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968730 MtrunA17_Chr5g0400081 99.690 323 1 0 1 323 1 323 0.0 655
Msa0968730 MtrunA17_Chr4g0055151 80.967 331 52 3 1 323 1 328 0.0 533
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968730 AT5G47040.1 77.644 331 62 4 1 323 1 327 4.35e-167 488

Find 85 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGGTGTTGCTACTATTT+TGG 0.131386 6_4:+59963 None:intergenic
TGCAGTGGCATGTTCTAAAT+TGG 0.156290 6_4:+59814 None:intergenic
CACTTTGCATCTTCCTTTCC+AGG 0.178687 6_4:+56681 None:intergenic
TCATATGGTTGTAATTTAAT+TGG 0.194020 6_4:+59946 None:intergenic
GTTTAGCAATACTTCCTTTC+AGG 0.199688 6_4:-59691 Msa0968730:CDS
GAATTGAAATCGCTTAAATT+AGG 0.287243 6_4:+59768 None:intergenic
CATGGAGCTTATTTCTGTTC+TGG 0.294413 6_4:-58171 Msa0968730:CDS
TGGAAGGACGAAAGTTCTTT+TGG 0.297337 6_4:-57801 Msa0968730:CDS
GCAGTGGCATGTTCTAAATT+GGG 0.303184 6_4:+59815 None:intergenic
ATTGGTTGACAGGCACTTAC+AGG 0.307853 6_4:-57657 Msa0968730:intron
ATGTTGTTCATTGGCATAAC+AGG 0.340249 6_4:-59090 Msa0968730:intron
ATCAGAAAACATGGCGGATT+CGG 0.353303 6_4:-59729 Msa0968730:exon
GGAGGATGACCTGGCTGCCC+TGG 0.397553 6_4:-56699 Msa0968730:CDS
TTCAGAATGATGTTGTTCAT+TGG 0.399246 6_4:-59099 Msa0968730:CDS
TCCCTCTTGTGTTTAGATCC+TGG 0.404247 6_4:+58857 None:intergenic
AACAACATCATTCTGAACTT+TGG 0.409435 6_4:+59105 None:intergenic
AGCTTTCACTTCGAGAGTTA+AGG 0.418238 6_4:-56634 Msa0968730:intron
GCTTTCAAAAGCAACTGAAT+TGG 0.419154 6_4:-57675 Msa0968730:CDS
CGTGACAACATTATGAAATC+CGG 0.420626 6_4:+58212 None:intergenic
CATCAAGGTATAGAGGGATA+TGG 0.423780 6_4:+56500 None:intergenic
TGAAGAACAATTATCAATGT+TGG 0.429291 6_4:-57720 Msa0968730:CDS
GCTTATTTCTGTTCTGGAGC+AGG 0.435754 6_4:-58165 Msa0968730:intron
TGATGAACCACCATGAACTT+TGG 0.436035 6_4:+59138 None:intergenic
CAGGAATGCCACAAAATGTC+TGG 0.441110 6_4:-56658 Msa0968730:CDS
GGGAAGAGATTCTTGCAGTA+TGG 0.450131 6_4:+58830 None:intergenic
ATATCAGCCAACTTGTGAAC+AGG 0.461959 6_4:+57770 None:intergenic
TTCTAATCTAGAGATGGAAC+AGG 0.462301 6_4:-58246 Msa0968730:intron
CAGTGGCATGTTCTAAATTG+GGG 0.472921 6_4:+59816 None:intergenic
GATCAAACTTCCAAAGTTCA+TGG 0.479166 6_4:-59148 Msa0968730:CDS
AGAGAAGAGAAAGGGATGAT+TGG 0.481319 6_4:-59244 Msa0968730:CDS
GACACTTCATCAAGGTATAG+AGG 0.481896 6_4:+56493 None:intergenic
ACATATATAGTTGTTCTTGA+AGG 0.486468 6_4:-58898 Msa0968730:CDS
AGAATTTCTTCTGCGCCAGC+AGG 0.494440 6_4:-57488 Msa0968730:intron
TCTTCCTTTCCAGGGCAGCC+AGG 0.495852 6_4:+56690 None:intergenic
AGTGTATTGAAATGAAATAA+TGG 0.509127 6_4:+59873 None:intergenic
TTCGTTGCACTTCACCTACC+AGG 0.516405 6_4:-59634 Msa0968730:intron
TCTTTATAGAAACAAAGTAC+TGG 0.521397 6_4:-57824 Msa0968730:intron
AGGAACAAAGTTCTCTTACC+TGG 0.522993 6_4:-59671 Msa0968730:CDS
AAGCAACTGAATTGGTTGAC+AGG 0.523403 6_4:-57667 Msa0968730:CDS
CTGTGGCAAAGAGAAGAGAA+AGG 0.524470 6_4:-59253 Msa0968730:CDS
TATTGAATGTAGTGTGAAGT+TGG 0.524516 6_4:-59287 Msa0968730:intron
GACTGTTCCTGTTCACAAGT+TGG 0.528077 6_4:-57777 Msa0968730:CDS
ATGACCTGGCTGCCCTGGAA+AGG 0.534598 6_4:-56694 Msa0968730:CDS
ACTTTGCATCTTCCTTTCCA+GGG 0.537168 6_4:+56682 None:intergenic
AAGAGAACTTTGTTCCTGAA+AGG 0.538793 6_4:+59677 None:intergenic
TTTGTGCAGATTTAATGTCC+AGG 0.540417 6_4:-58875 Msa0968730:CDS
ATCTATAGAATCTGATACAG+TGG 0.546837 6_4:+59168 None:intergenic
TACCGGTCTTAGTCATCTCA+AGG 0.548099 6_4:+58809 None:intergenic
TCAGATGAAGGCTATAAAAG+AGG 0.548654 6_4:-56744 Msa0968730:intron
TCCCTTGAGATGACTAAGAC+CGG 0.554372 6_4:-58811 Msa0968730:intron
GAAGCAGCAGTATCACGTAC+TGG 0.563002 6_4:+59214 None:intergenic
GAAAGGAAGATGCAAAGTGC+AGG 0.568446 6_4:-56677 Msa0968730:CDS
CGAATTCGAATGATAGCACC+AGG 0.570028 6_4:+59653 None:intergenic
TCTGCTGAAACTAAGCAACT+TGG 0.571818 6_4:-59193 Msa0968730:CDS
TTATAGAAACAAAGTACTGG+TGG 0.572333 6_4:-57821 Msa0968730:intron
TTCTCTTTGATCAGAAAACA+TGG 0.572493 6_4:-59738 Msa0968730:exon
ATATATGTGACCCTCCCACT+TGG 0.578521 6_4:+58913 None:intergenic
GGAACAGGTGGAGCATGACC+CGG 0.582137 6_4:-58231 Msa0968730:CDS
CTCGAGCATTACACTTATCG+AGG 0.592554 6_4:-58948 Msa0968730:CDS
GTGACAACATTATGAAATCC+GGG 0.593087 6_4:+58213 None:intergenic
ACACTTCATCAAGGTATAGA+GGG 0.604801 6_4:+56494 None:intergenic
TGTGGCAAAGAGAAGAGAAA+GGG 0.607160 6_4:-59252 Msa0968730:CDS
TCAATTTAAAGCAACTGCCA+TGG 0.608110 6_4:-58189 Msa0968730:CDS
AGAAACAAAGTACTGGTGGA+AGG 0.610104 6_4:-57817 Msa0968730:CDS
GTCCAGGATCTAAACACAAG+AGG 0.611069 6_4:-58859 Msa0968730:CDS
TAATCTAGAGATGGAACAGG+TGG 0.612364 6_4:-58243 Msa0968730:intron
TGATGATGAGGAGGATGACC+TGG 0.619171 6_4:-56708 Msa0968730:CDS
AGTAGAGAAACCAAGTGGGA+GGG 0.619415 6_4:-58923 Msa0968730:CDS
CAGAACAGAAATAAGCTCCA+TGG 0.620283 6_4:+58172 None:intergenic
GAGTAGAGAAACCAAGTGGG+AGG 0.620927 6_4:-58924 Msa0968730:CDS
GGAAGTATTGCTAAACGACT+CGG 0.626468 6_4:+59698 None:intergenic
TCCAGGATCTAAACACAAGA+GGG 0.632631 6_4:-58858 Msa0968730:CDS
TGAAGAAGCATCTACCTGGT+AGG 0.634508 6_4:+59620 None:intergenic
ACTCGGTGATAATGATGATG+AGG 0.635863 6_4:-56720 Msa0968730:CDS
TCGAGCATTACACTTATCGA+GGG 0.639262 6_4:-58947 Msa0968730:CDS
ACCGGTCTTAGTCATCTCAA+GGG 0.641791 6_4:+58810 None:intergenic
CGGTGATAATGATGATGAGG+AGG 0.657644 6_4:-56717 Msa0968730:CDS
AGGGGAGTAGAGAAACCAAG+TGG 0.665723 6_4:-58928 Msa0968730:CDS
AAGGCTATAAAAGAGGAACT+CGG 0.682473 6_4:-56737 Msa0968730:CDS
CAAACTTCCAAAGTTCATGG+TGG 0.686043 6_4:-59145 Msa0968730:CDS
ATTCTGTTGATGCTAAAGTG+AGG 0.702267 6_4:-57697 Msa0968730:CDS
GGGGAGTAGAGAAACCAAGT+GGG 0.705345 6_4:-58927 Msa0968730:CDS
CGAGCATTACACTTATCGAG+GGG 0.714426 6_4:-58946 Msa0968730:CDS
TCTTTGATCAGAAAACATGG+CGG 0.742116 6_4:-59735 Msa0968730:exon
AGTTGGTTGAACAAGAACTG+TGG 0.782154 6_4:-59270 Msa0968730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAACTAATTTTTATTCATA+TGG + chr6_4:56576-56595 None:intergenic 10.0%
!!! AGTTTTTATAATTTTTTTTG+TGG - chr6_4:57082-57101 Msa0968730:intron 10.0%
!! TGTAAAAAAAAAAAAAAACT+TGG + chr6_4:57888-57907 None:intergenic 10.0%
!!! TAAATGAAGTTAATAAATTT+TGG + chr6_4:59982-60001 None:intergenic 10.0%
!! AAAATTTATTAACTTCATTT+AGG - chr6_4:59981-60000 Msa0968730:five_prime_UTR 10.0%
!!! TTTTTATAATCTGTAACAAA+CGG + chr6_4:56924-56943 None:intergenic 15.0%
!! AATATATGAAATATTGTCTA+TGG - chr6_4:58518-58537 Msa0968730:intron 15.0%
!! TACTATGATAATATACATTT+CGG - chr6_4:59504-59523 Msa0968730:intron 15.0%
!!! TTTTTGAGTTGGATATTTTT+TGG + chr6_4:56520-56539 None:intergenic 20.0%
!! TCATATGGTTGTAATTTAAT+TGG + chr6_4:56561-56580 None:intergenic 20.0%
!!! GTTATTATTTTGGATTGAAT+TGG - chr6_4:56591-56610 Msa0968730:intron 20.0%
!! AGTGTATTGAAATGAAATAA+TGG + chr6_4:56634-56653 None:intergenic 20.0%
!!! TTTTGATTTCAGTGTATAAT+TGG + chr6_4:56662-56681 None:intergenic 20.0%
!!! TTTTATAATCTGTAACAAAC+GGG + chr6_4:56923-56942 None:intergenic 20.0%
!!! AAGATTAATTTTTTGTGACA+CGG - chr6_4:56970-56989 Msa0968730:intron 20.0%
!!! TTTGATCCTTTTTTAAAAAG+CGG - chr6_4:57012-57031 Msa0968730:intron 20.0%
!! AGAATAAATTGAATAGTTAC+CGG + chr6_4:57715-57734 None:intergenic 20.0%
!! AAAAAAAAACTTGGAATCTT+AGG + chr6_4:57879-57898 None:intergenic 20.0%
!! GCTTATGTGTTAATTATTAA+CGG + chr6_4:58056-58075 None:intergenic 20.0%
!!! TCTATAGATGAATTATTTTG+TGG - chr6_4:58601-58620 Msa0968730:intron 20.0%
!!! AGTTTTTTATGTCTGTATTT+AGG - chr6_4:59250-59269 Msa0968730:CDS 20.0%
!!! CAAGTTTTTTTTATCATGAT+CGG - chr6_4:59356-59375 Msa0968730:intron 20.0%
!!! AGTGTCTTTAATTTTATGTA+TGG - chr6_4:59577-59596 Msa0968730:intron 20.0%
!!! AGTTACAAATTCTTAGATTT+TGG - chr6_4:59912-59931 Msa0968730:five_prime_UTR 20.0%
!!! GTTACAAATTCTTAGATTTT+GGG - chr6_4:59913-59932 Msa0968730:five_prime_UTR 20.0%
!!! GGATATTTTTTGGATTATTG+TGG + chr6_4:56510-56529 None:intergenic 25.0%
!!! ACTATTTTGGATTTTTGAGT+TGG + chr6_4:56531-56550 None:intergenic 25.0%
! GAATTGAAATCGCTTAAATT+AGG + chr6_4:56739-56758 None:intergenic 25.0%
! ATGCTTCTTCAATTAAATTC+AGG - chr6_4:56896-56915 Msa0968730:intron 25.0%
!!! AGATTAATTTTTTGTGACAC+GGG - chr6_4:56971-56990 Msa0968730:intron 25.0%
! TTTGTGGAAAATTTGTATCA+AGG - chr6_4:57098-57117 Msa0968730:intron 25.0%
! TTGTGGAAAATTTGTATCAA+GGG - chr6_4:57099-57118 Msa0968730:intron 25.0%
! AAATGAAATTGTGAAATCCA+GGG - chr6_4:57524-57543 Msa0968730:CDS 25.0%
! ACATATATAGTTGTTCTTGA+AGG - chr6_4:57606-57625 Msa0968730:intron 25.0%
! CTTTAACATATGGTCTAAAT+AGG + chr6_4:58163-58182 None:intergenic 25.0%
! TGAATCTGATCTTTAACATA+TGG + chr6_4:58173-58192 None:intergenic 25.0%
! AGAAATACTTTATGCAATCA+TGG + chr6_4:58496-58515 None:intergenic 25.0%
! TCTTTATAGAAACAAAGTAC+TGG - chr6_4:58680-58699 Msa0968730:intron 25.0%
! TGAAGAACAATTATCAATGT+TGG - chr6_4:58784-58803 Msa0968730:intron 25.0%
! AAAATCACACAAAAAGTTGA+AGG - chr6_4:58972-58991 Msa0968730:intron 25.0%
!! CGCATTTGAAATATATATCA+CGG + chr6_4:59059-59078 None:intergenic 25.0%
! TGTGAAAAATATTCAGATGA+AGG - chr6_4:59748-59767 Msa0968730:five_prime_UTR 25.0%
! CTAATTCAATCTTAGAAAAC+CGG - chr6_4:59937-59956 Msa0968730:five_prime_UTR 25.0%
!!! AATTGGTGTTGCTACTATTT+TGG + chr6_4:56544-56563 None:intergenic 30.0%
!!! TTTTTAAGTCGATTTTGCAG+TGG + chr6_4:56708-56727 None:intergenic 30.0%
TTCTCTTTGATCAGAAAACA+TGG - chr6_4:56766-56785 Msa0968730:intron 30.0%
!!! TAGCTTCCGCTTTTTAAAAA+AGG + chr6_4:57021-57040 None:intergenic 30.0%
CACTAAAAATGTTGTAACAG+TGG - chr6_4:57176-57195 Msa0968730:intron 30.0%
ACTTCACACTACATTCAATA+AGG + chr6_4:57217-57236 None:intergenic 30.0%
TATTGAATGTAGTGTGAAGT+TGG - chr6_4:57217-57236 Msa0968730:intron 30.0%
ATCTATAGAATCTGATACAG+TGG + chr6_4:57339-57358 None:intergenic 30.0%
AACAACATCATTCTGAACTT+TGG + chr6_4:57402-57421 None:intergenic 30.0%
TTCAGAATGATGTTGTTCAT+TGG - chr6_4:57405-57424 Msa0968730:intron 30.0%
TGTTGTATCAGTAATCTTTG+TGG - chr6_4:57492-57511 Msa0968730:CDS 30.0%
GAAATGAAATTGTGAAATCC+AGG - chr6_4:57523-57542 Msa0968730:CDS 30.0%
AATGAAATTGTGAAATCCAG+GGG - chr6_4:57525-57544 Msa0968730:CDS 30.0%
!!! GAACATTGTTCTGCTTTTTT+TGG - chr6_4:57778-57797 Msa0968730:CDS 30.0%
CAGCATCTTCAAAGATAAAT+AGG + chr6_4:58224-58243 None:intergenic 30.0%
CCATCTCTAGATTAGAAAAA+TGG + chr6_4:58255-58274 None:intergenic 30.0%
!! CCATTTTTCTAATCTAGAGA+TGG - chr6_4:58252-58271 Msa0968730:intron 30.0%
!! TTATAGAAACAAAGTACTGG+TGG - chr6_4:58683-58702 Msa0968730:intron 30.0%
!!! TGTCACTGTTTTTTTTAGCT+TGG + chr6_4:59138-59157 None:intergenic 30.0%
! GTCTGTATTTAGGACAATAT+AGG - chr6_4:59260-59279 Msa0968730:CDS 30.0%
CTATGAAAATCAATGTCTTG+TGG - chr6_4:59295-59314 Msa0968730:intron 30.0%
TAACTACAAGTAGTAGCTTA+AGG + chr6_4:59479-59498 None:intergenic 30.0%
AGCTACTACTTGTAGTTAAA+TGG - chr6_4:59481-59500 Msa0968730:intron 30.0%
AATGGTGATATGTTATACCA+AGG - chr6_4:59612-59631 Msa0968730:intron 30.0%
!! TTTTGAAAGTCTTGGATTCT+TGG - chr6_4:59636-59655 Msa0968730:CDS 30.0%
TGTTTGAGTCTTTATCTGAT+TGG - chr6_4:59707-59726 Msa0968730:CDS 30.0%
!!! CGGTTTTCTAAGATTGAATT+AGG + chr6_4:59939-59958 None:intergenic 30.0%
TCTTTGATCAGAAAACATGG+CGG - chr6_4:56769-56788 Msa0968730:intron 35.0%
GTTTAGCAATACTTCCTTTC+AGG - chr6_4:56813-56832 Msa0968730:intron 35.0%
AAGAGAACTTTGTTCCTGAA+AGG + chr6_4:56830-56849 None:intergenic 35.0%
!! TAATTGAAGAAGCATCTACC+TGG + chr6_4:56891-56910 None:intergenic 35.0%
GATCAAACTTCCAAAGTTCA+TGG - chr6_4:57356-57375 Msa0968730:intron 35.0%
ATGTTGTTCATTGGCATAAC+AGG - chr6_4:57414-57433 Msa0968730:intron 35.0%
ATGAAATTGTGAAATCCAGG+GGG - chr6_4:57526-57545 Msa0968730:CDS 35.0%
TTTGTGCAGATTTAATGTCC+AGG - chr6_4:57629-57648 Msa0968730:intron 35.0%
ACACAAGTTTGTGTATAGCT+CGG - chr6_4:57743-57762 Msa0968730:CDS 35.0%
!!! TTGTTCTGCTTTTTTTGGAC+TGG - chr6_4:57783-57802 Msa0968730:CDS 35.0%
GAAACATTACACCACTTTGT+CGG - chr6_4:57932-57951 Msa0968730:intron 35.0%
AAACATTACACCACTTTGTC+GGG - chr6_4:57933-57952 Msa0968730:intron 35.0%
ATTCTGTGTGAGAAGCTAAT+AGG - chr6_4:58087-58106 Msa0968730:intron 35.0%
TTCTAATCTAGAGATGGAAC+AGG - chr6_4:58258-58277 Msa0968730:intron 35.0%
GTGACAACATTATGAAATCC+GGG + chr6_4:58294-58313 None:intergenic 35.0%
CGTGACAACATTATGAAATC+CGG + chr6_4:58295-58314 None:intergenic 35.0%
! TCAATTTAAAGCAACTGCCA+TGG - chr6_4:58315-58334 Msa0968730:intron 35.0%
CGAATTTATGTTAGTAGCGA+AGG + chr6_4:58394-58413 None:intergenic 35.0%
TCGCTACTAACATAAATTCG+TGG - chr6_4:58394-58413 Msa0968730:intron 35.0%
! GCATTGATCAACAAAAGTGT+CGG - chr6_4:58430-58449 Msa0968730:intron 35.0%
!! CATTGATCAACAAAAGTGTC+GGG - chr6_4:58431-58450 Msa0968730:intron 35.0%
TGAACAGCCTATCAAAAAGT+GGG + chr6_4:58545-58564 None:intergenic 35.0%
ATGAACAGCCTATCAAAAAG+TGG + chr6_4:58546-58565 None:intergenic 35.0%
ATTTCACAGTTTCTGTTGTG+TGG - chr6_4:58634-58653 Msa0968730:intron 35.0%
TTTCACAGTTTCTGTTGTGT+GGG - chr6_4:58635-58654 Msa0968730:intron 35.0%
ATTCTGTTGATGCTAAAGTG+AGG - chr6_4:58807-58826 Msa0968730:intron 35.0%
GCTTTCAAAAGCAACTGAAT+TGG - chr6_4:58829-58848 Msa0968730:CDS 35.0%
GGAATCAAAAGACAAGTAGT+GGG + chr6_4:58913-58932 None:intergenic 35.0%
TGGAATCAAAAGACAAGTAG+TGG + chr6_4:58914-58933 None:intergenic 35.0%
TCAAATGCGAATCAGAGTAT+AGG - chr6_4:59070-59089 Msa0968730:intron 35.0%
CAAATGCGAATCAGAGTATA+GGG - chr6_4:59071-59090 Msa0968730:intron 35.0%
AAATGCGAATCAGAGTATAG+GGG - chr6_4:59072-59091 Msa0968730:intron 35.0%
AACCATTTGAGCAACAAAGA+TGG + chr6_4:59384-59403 None:intergenic 35.0%
! TTTCTGAGAGCAGTAGATTA+AGG - chr6_4:59423-59442 Msa0968730:intron 35.0%
!! GTATGGAAGCACTATGTAAA+TGG - chr6_4:59594-59613 Msa0968730:intron 35.0%
!! ACCAAGGATTTTGAAAGTCT+TGG - chr6_4:59628-59647 Msa0968730:intron 35.0%
TCCAAGACTTTCAAAATCCT+TGG + chr6_4:59632-59651 None:intergenic 35.0%
TCAGATGAAGGCTATAAAAG+AGG - chr6_4:59760-59779 Msa0968730:five_prime_UTR 35.0%
AAGGCTATAAAAGAGGAACT+CGG - chr6_4:59767-59786 Msa0968730:five_prime_UTR 35.0%
! CAGTGGCATGTTCTAAATTG+GGG + chr6_4:56691-56710 None:intergenic 40.0%
! GCAGTGGCATGTTCTAAATT+GGG + chr6_4:56692-56711 None:intergenic 40.0%
! TGCAGTGGCATGTTCTAAAT+TGG + chr6_4:56693-56712 None:intergenic 40.0%
!! ATCAGAAAACATGGCGGATT+CGG - chr6_4:56775-56794 Msa0968730:intron 40.0%
!! GGAAGTATTGCTAAACGACT+CGG + chr6_4:56809-56828 None:intergenic 40.0%
AGGAACAAAGTTCTCTTACC+TGG - chr6_4:56833-56852 Msa0968730:intron 40.0%
GCGTTCGTTAATCAGAAGAA+AGG - chr6_4:57045-57064 Msa0968730:intron 40.0%
AGTTGGTTGAACAAGAACTG+TGG - chr6_4:57234-57253 Msa0968730:intron 40.0%
TGTGGCAAAGAGAAGAGAAA+GGG - chr6_4:57252-57271 Msa0968730:intron 40.0%
AGAGAAGAGAAAGGGATGAT+TGG - chr6_4:57260-57279 Msa0968730:intron 40.0%
TCTGCTGAAACTAAGCAACT+TGG - chr6_4:57311-57330 Msa0968730:intron 40.0%
CAAACTTCCAAAGTTCATGG+TGG - chr6_4:57359-57378 Msa0968730:intron 40.0%
TGATGAACCACCATGAACTT+TGG + chr6_4:57369-57388 None:intergenic 40.0%
TGAAATTGTGAAATCCAGGG+GGG - chr6_4:57527-57546 Msa0968730:CDS 40.0%
TCGAGCATTACACTTATCGA+GGG - chr6_4:57557-57576 Msa0968730:intron 40.0%
TCCAGGATCTAAACACAAGA+GGG - chr6_4:57646-57665 Msa0968730:intron 40.0%
!!! TGCTTTTTTTGGACTGGTGT+GGG - chr6_4:57789-57808 Msa0968730:CDS 40.0%
TAATCTAGAGATGGAACAGG+TGG - chr6_4:58261-58280 Msa0968730:intron 40.0%
CAGAACAGAAATAAGCTCCA+TGG + chr6_4:58335-58354 None:intergenic 40.0%
!! CATGGAGCTTATTTCTGTTC+TGG - chr6_4:58333-58352 Msa0968730:intron 40.0%
!!! CTATGGACCCACTTTTTGAT+AGG - chr6_4:58535-58554 Msa0968730:intron 40.0%
TAGGCTGTTCATAGTCCAAT+TGG - chr6_4:58554-58573 Msa0968730:intron 40.0%
!! AGAAACAAAGTACTGGTGGA+AGG - chr6_4:58687-58706 Msa0968730:intron 40.0%
! TGGAAGGACGAAAGTTCTTT+TGG - chr6_4:58703-58722 Msa0968730:intron 40.0%
ATATCAGCCAACTTGTGAAC+AGG + chr6_4:58737-58756 None:intergenic 40.0%
AAGCAACTGAATTGGTTGAC+AGG - chr6_4:58837-58856 Msa0968730:CDS 40.0%
ATTTAACGATGCTTCCTGTG+AGG - chr6_4:58880-58899 Msa0968730:CDS 40.0%
TAGTGGGAAATAAACCTCAC+AGG + chr6_4:58897-58916 None:intergenic 40.0%
ACAGTGACAGTGATTTCAGA+TGG - chr6_4:59149-59168 Msa0968730:CDS 40.0%
CAGTGACAGTGATTTCAGAT+GGG - chr6_4:59150-59169 Msa0968730:CDS 40.0%
GATAAATCAGTGCTTCAGCT+AGG + chr6_4:59201-59220 None:intergenic 40.0%
TCGAACAATGAGACAAGTTG+AGG + chr6_4:59333-59352 None:intergenic 40.0%
TGCCATCTTTGTTGCTCAAA+TGG - chr6_4:59379-59398 Msa0968730:intron 40.0%
! ACATAGCATCAACGTTTTGC+TGG - chr6_4:59453-59472 Msa0968730:intron 40.0%
! ACTCGGTGATAATGATGATG+AGG - chr6_4:59784-59803 Msa0968730:five_prime_UTR 40.0%
ACTTTGCATCTTCCTTTCCA+GGG + chr6_4:59825-59844 None:intergenic 40.0%
! GAAAGCTTCCAGACATTTTG+TGG + chr6_4:59857-59876 None:intergenic 40.0%
AGCTTTCACTTCGAGAGTTA+AGG - chr6_4:59870-59889 Msa0968730:five_prime_UTR 40.0%
TCTTAGAAAACCGGTCTGTA+AGG - chr6_4:59946-59965 Msa0968730:five_prime_UTR 40.0%
ACAATCTTCACCTTACAGAC+CGG + chr6_4:59959-59978 None:intergenic 40.0%
CGAATTCGAATGATAGCACC+AGG + chr6_4:56854-56873 None:intergenic 45.0%
!! TGAAGAAGCATCTACCTGGT+AGG + chr6_4:56887-56906 None:intergenic 45.0%
CTGTGGCAAAGAGAAGAGAA+AGG - chr6_4:57251-57270 Msa0968730:intron 45.0%
CTCGAGCATTACACTTATCG+AGG - chr6_4:57556-57575 Msa0968730:intron 45.0%
CGAGCATTACACTTATCGAG+GGG - chr6_4:57558-57577 Msa0968730:intron 45.0%
AGTAGAGAAACCAAGTGGGA+GGG - chr6_4:57581-57600 Msa0968730:intron 45.0%
ATATATGTGACCCTCCCACT+TGG + chr6_4:57594-57613 None:intergenic 45.0%
GTCCAGGATCTAAACACAAG+AGG - chr6_4:57645-57664 Msa0968730:intron 45.0%
TCCCTCTTGTGTTTAGATCC+TGG + chr6_4:57650-57669 None:intergenic 45.0%
GGGAAGAGATTCTTGCAGTA+TGG + chr6_4:57677-57696 None:intergenic 45.0%
TCCCTTGAGATGACTAAGAC+CGG - chr6_4:57693-57712 Msa0968730:CDS 45.0%
ACCGGTCTTAGTCATCTCAA+GGG + chr6_4:57697-57716 None:intergenic 45.0%
TACCGGTCTTAGTCATCTCA+AGG + chr6_4:57698-57717 None:intergenic 45.0%
!!! CTGCTTTTTTTGGACTGGTG+TGG - chr6_4:57788-57807 Msa0968730:CDS 45.0%
!!! GCTTTTTTTGGACTGGTGTG+GGG - chr6_4:57790-57809 Msa0968730:CDS 45.0%
AGACATATGTCCCGACAAAG+TGG + chr6_4:57946-57965 None:intergenic 45.0%
!! GCTTATTTCTGTTCTGGAGC+AGG - chr6_4:58339-58358 Msa0968730:intron 45.0%
CTGTTCATAGTCCAATTGGC+TGG - chr6_4:58558-58577 Msa0968730:intron 45.0%
TCATAGTCCAATTGGCTGGT+TGG - chr6_4:58562-58581 Msa0968730:intron 45.0%
GACTGTTCCTGTTCACAAGT+TGG - chr6_4:58727-58746 Msa0968730:intron 45.0%
ATTGGTTGACAGGCACTTAC+AGG - chr6_4:58847-58866 Msa0968730:CDS 45.0%
CTGTTGGCAGTAGACAAAAG+TGG + chr6_4:58934-58953 None:intergenic 45.0%
!! CAGCTACACGTATTGACTGT+TGG + chr6_4:58950-58969 None:intergenic 45.0%
TGTTGAGAAAGCTAACCTGC+TGG + chr6_4:59034-59053 None:intergenic 45.0%
GGCTAAGGGAATCGTTTAGA+GGG + chr6_4:59180-59199 None:intergenic 45.0%
AGGCTAAGGGAATCGTTTAG+AGG + chr6_4:59181-59200 None:intergenic 45.0%
! TGAGACAAGTTGAGGCACTA+TGG + chr6_4:59325-59344 None:intergenic 45.0%
! CGGTGATAATGATGATGAGG+AGG - chr6_4:59787-59806 Msa0968730:five_prime_UTR 45.0%
CACTTTGCATCTTCCTTTCC+AGG + chr6_4:59826-59845 None:intergenic 45.0%
GAAAGGAAGATGCAAAGTGC+AGG - chr6_4:59827-59846 Msa0968730:five_prime_UTR 45.0%
CAGGAATGCCACAAAATGTC+TGG - chr6_4:59846-59865 Msa0968730:five_prime_UTR 45.0%
!!! ATAAAAATTAGTTATTATTT+TGG - chr6_4:56581-56600 Msa0968730:intron 5.0%
!!! AATATTACTATATTTTAAAT+CGG + chr6_4:57818-57837 None:intergenic 5.0%
TTCGTTGCACTTCACCTACC+AGG - chr6_4:56870-56889 Msa0968730:intron 50.0%
GAAGCAGCAGTATCACGTAC+TGG + chr6_4:57293-57312 None:intergenic 50.0%
AGGGGAGTAGAGAAACCAAG+TGG - chr6_4:57576-57595 Msa0968730:intron 50.0%
GGGGAGTAGAGAAACCAAGT+GGG - chr6_4:57577-57596 Msa0968730:intron 50.0%
GAGTAGAGAAACCAAGTGGG+AGG - chr6_4:57580-57599 Msa0968730:intron 50.0%
GGACATATGTCTGCACTTGC+TGG - chr6_4:57954-57973 Msa0968730:intron 50.0%
GTTTACGCCAACCAGCCAAT+TGG + chr6_4:58572-58591 None:intergenic 50.0%
AGAATTTCTTCTGCGCCAGC+AGG - chr6_4:59016-59035 Msa0968730:intron 50.0%
CAGTGCTTCAGCTAGGCTAA+GGG + chr6_4:59194-59213 None:intergenic 50.0%
TCAGTGCTTCAGCTAGGCTA+AGG + chr6_4:59195-59214 None:intergenic 50.0%
! TGATGATGAGGAGGATGACC+TGG - chr6_4:59796-59815 Msa0968730:five_prime_UTR 50.0%
GTCGGGCATGCTGATGTAGA+TGG - chr6_4:58448-58467 Msa0968730:intron 55.0%
ATGCTCCTCTGCAGCAGAAC+TGG + chr6_4:59662-59681 None:intergenic 55.0%
GGAACAGGTGGAGCATGACC+CGG - chr6_4:58273-58292 Msa0968730:intron 60.0%
CTTGGCCAGTTCTGCTGCAG+AGG - chr6_4:59654-59673 Msa0968730:CDS 60.0%
ATGACCTGGCTGCCCTGGAA+AGG - chr6_4:59810-59829 Msa0968730:five_prime_UTR 60.0%
TCTTCCTTTCCAGGGCAGCC+AGG + chr6_4:59817-59836 None:intergenic 60.0%
TGCTCGAGCAGCTACCCCCC+TGG + chr6_4:57544-57563 None:intergenic 70.0%
GGAGGATGACCTGGCTGCCC+TGG - chr6_4:59805-59824 Msa0968730:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 56502 60024 56502 ID=Msa0968730;Name=Msa0968730
chr6_4 mRNA 56502 60024 56502 ID=Msa0968730-mRNA-1;Parent=Msa0968730;Name=Msa0968730-mRNA-1;_AED=0.01;_eAED=0.01;_QI=283|0.85|0.75|0.87|1|1|8|0|329
chr6_4 exon 56502 56523 56502 ID=Msa0968730-mRNA-1:exon:34;Parent=Msa0968730-mRNA-1
chr6_4 exon 56635 56762 56635 ID=Msa0968730-mRNA-1:exon:33;Parent=Msa0968730-mRNA-1
chr6_4 exon 57489 57572 57489 ID=Msa0968730-mRNA-1:exon:32;Parent=Msa0968730-mRNA-1
chr6_4 exon 57658 57837 57658 ID=Msa0968730-mRNA-1:exon:31;Parent=Msa0968730-mRNA-1
chr6_4 exon 58166 58257 58166 ID=Msa0968730-mRNA-1:exon:30;Parent=Msa0968730-mRNA-1
chr6_4 exon 58812 58981 58812 ID=Msa0968730-mRNA-1:exon:29;Parent=Msa0968730-mRNA-1
chr6_4 exon 59091 59297 59091 ID=Msa0968730-mRNA-1:exon:28;Parent=Msa0968730-mRNA-1
chr6_4 exon 59635 60024 59635 ID=Msa0968730-mRNA-1:exon:27;Parent=Msa0968730-mRNA-1
chr6_4 five_prime_UTR 59742 60024 59742 ID=Msa0968730-mRNA-1:five_prime_utr;Parent=Msa0968730-mRNA-1
chr6_4 CDS 59635 59741 59635 ID=Msa0968730-mRNA-1:cds;Parent=Msa0968730-mRNA-1
chr6_4 CDS 59091 59297 59091 ID=Msa0968730-mRNA-1:cds;Parent=Msa0968730-mRNA-1
chr6_4 CDS 58812 58981 58812 ID=Msa0968730-mRNA-1:cds;Parent=Msa0968730-mRNA-1
chr6_4 CDS 58166 58257 58166 ID=Msa0968730-mRNA-1:cds;Parent=Msa0968730-mRNA-1
chr6_4 CDS 57658 57837 57658 ID=Msa0968730-mRNA-1:cds;Parent=Msa0968730-mRNA-1
chr6_4 CDS 57489 57572 57489 ID=Msa0968730-mRNA-1:cds;Parent=Msa0968730-mRNA-1
chr6_4 CDS 56635 56762 56635 ID=Msa0968730-mRNA-1:cds;Parent=Msa0968730-mRNA-1
chr6_4 CDS 56502 56523 56502 ID=Msa0968730-mRNA-1:cds;Parent=Msa0968730-mRNA-1
Gene Sequence

>Msa0968730

ATGGCGGATTCGGTTGAGCTACCGAGTCGTTTAGCAATACTTCCTTTCAGGAACAAAGTTCTCTTACCTGGTGCTATCATTCGAATTCGTTGCACTTCACCTACCAGTGTGAAGTTGGTTGAACAAGAACTGTGGCAAAGAGAAGAGAAAGGGATGATTGGCATCTTGCCAGTACGTGATACTGCTGCTTCTGCTGAAACTAAGCAACTTGGTTCCACTGTATCAGATTCTATAGATCAAACTTCCAAAGTTCATGGTGGTTCATCAGATTCTAATGCCAAAGTTCAGAATGATGTTGTTCATTGGCATAACAGGGGGGTAGCTGCTCGAGCATTACACTTATCGAGGGGAGTAGAGAAACCAAGTGGGAGGGTCACATATATAGTTGTTCTTGAAGGTTTGTGCAGATTTAATGTCCAGGATCTAAACACAAGAGGGACATACCATACTGCAAGAATCTCTTCCCTTGAGATGACTAAGACCGAGATGGAACAGGTGGAGCATGACCCGGATTTCATAATGTTGTCACGTCAATTTAAAGCAACTGCCATGGAGCTTATTTCTGTTCTGGAGCAGAAACAAAGTACTGGTGGAAGGACGAAAGTTCTTTTGGAGACTGTTCCTGTTCACAAGTTGGCTGATATATTTGTTGCTAGCTTTGAGATAAGTTTTGAAGAACAATTATCAATGTTGGATTCTGTTGATGCTAAAGTGAGGCTTTCAAAAGCAACTGAATTGGTTGACAGGCACTTACAGTCAATACGTGTAGCTGAGAAAATCACACAAAAAGTTGAAGGACAATTGTCAAAATCTCAAAAAGAATTTCTTCTGCGCCAGCAGATGAAGGCTATAAAAGAGGAACTCGGTGATAATGATGATGAGGAGGATGACCTGGCTGCCCTGGAAAGGAAGATGCAAAGTGCAGGAATGCCACAAAATGTCTGGAAGCTTTCACTTCGAGAGTTAAGGCCATATCCCTCTATACCTTGA

Protein sequence

>Msa0968730

MADSVELPSRLAILPFRNKVLLPGAIIRIRCTSPTSVKLVEQELWQREEKGMIGILPVRDTAASAETKQLGSTVSDSIDQTSKVHGGSSDSNAKVQNDVVHWHNRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFNVQDLNTRGTYHTARISSLEMTKTEMEQVEHDPDFIMLSRQFKATAMELISVLEQKQSTGGRTKVLLETVPVHKLADIFVASFEISFEEQLSMLDSVDAKVRLSKATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMKAIKEELGDNDDEEDDLAALERKMQSAGMPQNVWKLSLRELRPYPSIP*