AlfalfaGEDB | Msa0069600

M. sativa cultivar zhongmu-4 / Msa0069600

KEGG: -
GO: GO:0000271 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009664 GO:0009832 GO:0009889 GO:0009987 GO:0010383 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016043 GO:0016051 GO:0019222 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044036 GO:0044038 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0051128 GO:0051273 GO:0051274 GO:0052324 GO:0052541 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098791 GO:1901576 GO:1903338 GO:2000112 GO:2001006 GO:2001009
PFAM: PF03385.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0069600	XP_039691221.1	99.740	769	2	0	1	769	1	769	0.0	1582

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0069600	sp\|O22943\|STL1_ARATH	71.337	778	207	6	1	769	1	771	0.0	1172

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0069600	A0A396JLH9	99.740	769	2	0	1	769	1	769	0.0	1582

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002680	Msa0069600	0.868514	6.170964e-66	-8.615850e-47
Msa0002710	Msa0069600	0.808884	2.487308e-50	-8.615850e-47
Msa0003220	Msa0069600	0.829056	6.370738e-55	-8.615850e-47
Msa0003270	Msa0069600	0.814510	1.485376e-51	-8.615850e-47
Msa0004540	Msa0069600	0.820532	6.526376e-53	-8.615850e-47
Msa0010770	Msa0069600	0.815712	8.030957e-52	-8.615850e-47
Msa0012940	Msa0069600	0.839801	1.275091e-57	-8.615850e-47
Msa0016540	Msa0069600	0.840603	7.871736e-58	-8.615850e-47
Msa0022750	Msa0069600	-0.837915	3.920121e-57	-8.615850e-47
Msa0031820	Msa0069600	0.829031	6.460910e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0069600	MtrunA17_Chr1g0173391	99.740	769	2	0	1	769	1	769	0.0	1582

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0069600	AT2G41770.1	71.337	778	207	6	1	769	1	771	0.0	1172
Msa0069600	AT3G57420.1	70.323	775	214	6	1	769	1	765	0.0	1136

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Find 212 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGAAGACCAAGACTC+GGG	0.631408	1_2:+38550278	None:intergenic
AAAGATCTTCATGTGAATGT+TGG	0.550556	1_2:-38552631	Msa0069600:CDS
AAATCACTAATTAAGCGCTG+AGG	0.719879	1_2:+38550101	None:intergenic
AACAAGCGAATTTGGGGTTT+AGG	0.295560	1_2:-38553332	Msa0069600:CDS
AACGCACGGCCCTTGAATGG+AGG	0.610127	1_2:-38552237	Msa0069600:CDS
AAGAAACATGTAATACACTT+GGG	0.605203	1_2:-38549767	Msa0069600:three_prime_UTR
AAGAAATTGGTGAAGGTGAA+GGG	0.578264	1_2:-38553435	Msa0069600:CDS
AAGATCTTTCTCCTCCGAAA+AGG	0.448139	1_2:+38552645	None:intergenic
AAGCGGATAAAACCAAACTG+TGG	0.694265	1_2:-38551221	Msa0069600:CDS
AAGGTTGAGGTTACTTGTTT+GGG	0.411934	1_2:+38554002	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTTATCTCACACCTTATT+AGG	+	chr1_2:38549465-38549484	None:intergenic	30.0%
CAATACAACTTCAACTAGTT+TGG	+	chr1_2:38549509-38549528	None:intergenic	30.0%
TGAAGTTGTATTGAAGCTTA+AGG	-	chr1_2:38549516-38549535	Msa0069600:three_prime_UTR	30.0%
GGTTCTTTGTATGAGTAAAA+CGG	+	chr1_2:38549818-38549837	None:intergenic	30.0%
AATTTCTTCAACTCATCACT+CGG	+	chr1_2:38550104-38550123	None:intergenic	30.0%
TGCCTTATGATTCTTATGTT+AGG	-	chr1_2:38550255-38550274	Msa0069600:CDS	30.0%
GTTAATCCGTATGTTCATTT+CGG	-	chr1_2:38550458-38550477	Msa0069600:intron	30.0%
TTAATCCGTATGTTCATTTC+GGG	-	chr1_2:38550459-38550478	Msa0069600:intron	30.0%
TAAAACACAGAATCAACATC+AGG	+	chr1_2:38550608-38550627	None:intergenic	30.0%
CTATCATATCTATGAACAGT+AGG	+	chr1_2:38550872-38550891	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	38549438	38554135	38549438	ID=Msa0069600;Name=Msa0069600
chr1_2	mRNA	38549438	38554135	38549438	ID=Msa0069600-mRNA-1;Parent=Msa0069600;Name=Msa0069600-mRNA-1;_AED=0.00;_eAED=0.00;_QI=285\|1\|1\|1\|1\|1\|3\|395\|769
chr1_2	exon	38549438	38550303	38549438	ID=Msa0069600-mRNA-1:exon:12025;Parent=Msa0069600-mRNA-1
chr1_2	exon	38551209	38551335	38551209	ID=Msa0069600-mRNA-1:exon:12024;Parent=Msa0069600-mRNA-1
chr1_2	exon	38552139	38554135	38552139	ID=Msa0069600-mRNA-1:exon:12023;Parent=Msa0069600-mRNA-1
chr1_2	five_prime_UTR	38553851	38554135	38553851	ID=Msa0069600-mRNA-1:five_prime_utr;Parent=Msa0069600-mRNA-1
chr1_2	CDS	38552139	38553850	38552139	ID=Msa0069600-mRNA-1:cds;Parent=Msa0069600-mRNA-1
chr1_2	CDS	38551209	38551335	38551209	ID=Msa0069600-mRNA-1:cds;Parent=Msa0069600-mRNA-1
chr1_2	CDS	38549833	38550303	38549833	ID=Msa0069600-mRNA-1:cds;Parent=Msa0069600-mRNA-1
chr1_2	three_prime_UTR	38549438	38549832	38549438	ID=Msa0069600-mRNA-1:three_prime_utr;Parent=Msa0069600-mRNA-1

Gene Sequence

>Msa0069600

ATGTTGGTCCAAGAGCATTCTTCAGCTCAAAAACCATCAAATCCAAATCCAAATCCAAAACCTTATTTGAAAAAAAGTGATCTTCCTACAAACCGTTTTACTCATACAAAGAACCTCGACTTCTCCGTATGGGCATCCGAAAATCTTTACAAAATTGTTTCCGTCATTCTTCTCGTCGTAACCGTCGCAGCACTTTTCTTCCTACGTAACGTTGGCGACACCGCCGCTTTACTTTGTTTCGAGAACAAAGCGCGTGATCTCGAGAAGATCGAGTATCCACGCGTCGATTGGAACAAAATCACACCAATCGCCGATAGAAATTCGCGGTACGCCAATTTCTTATCGGAGAAATGGATCGTGGTTTCGGTTTCGGGTTACCCGAGTGATGAGTTGAAGAAATTGGTGAAGGTGAAGGGTTGGCAGGTTGTGGCGATTGGTGATTCGAGAACTCCGGCGGATTGGAGTTTGAAAGGTTGTATCTTTTTGTCATTGGATGAACAAGCGAATTTGGGGTTTAGGGTTGTTGATTATTTGCCTTATGATTCTTATGTTAGGAAAATTGTTGGGTATTTGTTTGCAATTCAACATGGTGCTAAGAAGATTTTTGATGCTGATGATAGAGGGGAAGTGATTGATGGGGATTTGGGGAAACATTTTGATGTTGAATTGGTTGGTGAAGGTGCTAGGCAAGAGGTTTTGTTGCAGTATAGTCATGATAATCCTAATAGGACTGTTGTTAATCCGTATGTTCATTTCGGGCAAAGATCGGTTTGGCCGAGAGGTTTGCCGTTGGAAAATGTGGGTGAGATTGGGCATGAAGAGTTTTACACTCAGGTGTTTGGTGGGAAACAGTTTATTCAGCAGGGGATTTCGAATGGATTGCCTGATGTTGATTCTGTGTTTTATTTTACAAGGAAATCGGGTTTGGAACCGTTTGATATTCGATTTGATAAGCATGCGCCGAAGGTTGCATTGCCTCAAGGTGTGATGATGCCGGTTAATTCATTTAATACGATGTATCATTCGCCTGCTTTTTGGGCTTTGATGCTTCCGGTTTCGGTTAGTAGGATGGCTTCTGATGTTTTGAGAGGTTATTGGGGACAGAGGCTTCTTTGGGAAGTTGGTGGTTATGTTGCTGTTTATCCACCTACTGTTCATAGATATGATAGGGTTGAGGCTTATCCCTTTTCGGAGGAGAAAGATCTTCATGTGAATGTTGGTCGTTTGATTAAGTATTTGGTTCTGTGGAGATCGGATAAGCATAGATTGTTTGAGAAGATCTTGGATTTGAGCTATGCAATGGCAGAGGAGGGTTTTTGGACCGACAAGGATGTGAAACTTACTGCCGCTTGGCTTCAGGATTTGTTAGCTGTTGGTTATCAGCAGCCAAGGCTAATGTCTTTGGAACTTGGTCGTCCGAGAGCAAACATTGGCGACGGAGACCAGAGGGAGTTTATCCCACAAAAGTTGCCGTCTGTTCATCTTGGGGTTGAAGAAACAGGAACTGTGAATTATGAGATTGCTAATTTAATCAGATGGAGAAAAACTTTCGGGAATGTTGTGCTCATCATGCATTGCAGCGGGCCTGTTGAACGCACGGCCCTTGAATGGAGGTTGCTTTATGGGAGAATATTCAGAAGTGTCGTTATTTTGTCGGAAAAGAAGGATGTAGATCTTGTTGTTCAGGAGGTCCATTTGGACCAAGCATACAAGTACCTGCCAAAAATATTTGATCAATTTAGCAGTGCAGAAGGATTTTTATTCCTGCAGGATAATACAATTCTTAACTATTGGAACTTACTACAAGCGGATAAAACCAAACTGTGGATCACTAATAAGGTACCCGAGTCTTGGTCTTCTGTTTTAACTGGGGACAACAATGCCGACTGGTTATCTCAACAAGCAAGCATGGTACAAAAGGTTGTTAGCATGATGCCAGCTCACTTTCAAGTCAATTACAAAGACACAAGTAACAATGACAAGAACCTCTTGTTATGCAGTTCTGAGATATTCTATGTTCCTCAGCGCTTAATTAGTGATTTCGTTGACCTTGTTAACCTAGTAGACAATCTAGAGATCCATCAGAAGGTTGCAATTCCTATGTTCTTTGTCTCAATGGATTCTACACAGAATTTTGATCCTGTTCTTGATAAAACAATCTACAAGCAAGCTCCTCCGACTAATTCATCGACTCTTTATTCGGCTAAAGTCCCTGCTGTTCATCCATGGAGTGTATCAAGTGAGCAAGAATTTATTAAGCTTATCAGAATAATGGCTGAAGGGGATCCACTCCTAATGGAATTGGTTTGA

Protein sequence

>Msa0069600

MLVQEHSSAQKPSNPNPNPKPYLKKSDLPTNRFTHTKNLDFSVWASENLYKIVSVILLVVTVAALFFLRNVGDTAALLCFENKARDLEKIEYPRVDWNKITPIADRNSRYANFLSEKWIVVSVSGYPSDELKKLVKVKGWQVVAIGDSRTPADWSLKGCIFLSLDEQANLGFRVVDYLPYDSYVRKIVGYLFAIQHGAKKIFDADDRGEVIDGDLGKHFDVELVGEGARQEVLLQYSHDNPNRTVVNPYVHFGQRSVWPRGLPLENVGEIGHEEFYTQVFGGKQFIQQGISNGLPDVDSVFYFTRKSGLEPFDIRFDKHAPKVALPQGVMMPVNSFNTMYHSPAFWALMLPVSVSRMASDVLRGYWGQRLLWEVGGYVAVYPPTVHRYDRVEAYPFSEEKDLHVNVGRLIKYLVLWRSDKHRLFEKILDLSYAMAEEGFWTDKDVKLTAAWLQDLLAVGYQQPRLMSLELGRPRANIGDGDQREFIPQKLPSVHLGVEETGTVNYEIANLIRWRKTFGNVVLIMHCSGPVERTALEWRLLYGRIFRSVVILSEKKDVDLVVQEVHLDQAYKYLPKIFDQFSSAEGFLFLQDNTILNYWNLLQADKTKLWITNKVPESWSSVLTGDNNADWLSQQASMVQKVVSMMPAHFQVNYKDTSNNDKNLLLCSSEIFYVPQRLISDFVDLVNLVDNLEIHQKVAIPMFFVSMDSTQNFDPVLDKTIYKQAPPTNSSTLYSAKVPAVHPWSVSSEQEFIKLIRIMAEGDPLLMELV*