AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0334040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0334040 MtrunA17_Chr2g0318351 88.571 35 4 0 1 35 1 35 3.23e-16 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 27 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAACGAGTGAAGCGGATT+TGG 0.264875 2_4:+52109062 None:intergenic
ATGTACATACCATGTTTGAT+AGG 0.375476 2_4:-52106925 Msa0334040:CDS
TGAACGAGTGAAGCGGATTT+GGG 0.376003 2_4:+52109063 None:intergenic
CGCGGCATGGCTGGTTCCTC+CGG 0.398709 2_4:-52109036 Msa0334040:CDS
GTTCATCGCCGCGGCATGGC+TGG 0.417524 2_4:-52109045 Msa0334040:CDS
ACTCGTTCATCGCCGCGGCA+TGG 0.488087 2_4:-52109049 Msa0334040:CDS
TTTGAAATTTACAGTGATGA+CGG 0.514300 2_4:+52108979 None:intergenic
AAAGGCATCGAAGGAAGGGA+GGG 0.517248 2_4:+52109003 None:intergenic
ATTTACAGTGATGACGGAAA+AGG 0.518835 2_4:+52108985 None:intergenic
AAAAGGCATCGAAGGAAGGG+AGG 0.521951 2_4:+52109002 None:intergenic
ATCAAACATGGTATGTACAT+TGG 0.534411 2_4:+52106928 None:intergenic
ACGGAAAAGGCATCGAAGGA+AGG 0.541002 2_4:+52108998 None:intergenic
GAGTGAAGCGGATTTGGGTG+AGG 0.556913 2_4:+52109068 None:intergenic
CGGAAAAGGCATCGAAGGAA+GGG 0.577133 2_4:+52108999 None:intergenic
CGGCGTGGACAGCAGCAGCT+CGG 0.586707 2_4:-52109116 Msa0334040:CDS
CGGAGGAACCAGCCATGCCG+CGG 0.602802 2_4:+52109037 None:intergenic
AAGGGAGGGGAATACAATAC+CGG 0.610448 2_4:+52109017 None:intergenic
GATGACGGAAAAGGCATCGA+AGG 0.617840 2_4:+52108994 None:intergenic
AAGGCATCGAAGGAAGGGAG+GGG 0.624488 2_4:+52109004 None:intergenic
AAGCGGATTTGGGTGAGGAG+AGG 0.632963 2_4:+52109073 None:intergenic
GCGGCGATGAACGAGTGAAG+CGG 0.636022 2_4:+52109056 None:intergenic
ATCAATCAATCATGGCGGCG+TGG 0.642816 2_4:-52109131 None:intergenic
TATGTACATTGGAAGTGCTA+AGG 0.655246 2_4:+52106939 None:intergenic
TTTCAAAATCCTATCAAACA+TGG 0.655678 2_4:+52106916 None:intergenic
GCTCGGCAAGCAATGAACGT+CGG 0.679714 2_4:-52109099 Msa0334040:CDS
GCTTCACTCGTTCATCGCCG+CGG 0.699867 2_4:-52109054 Msa0334040:CDS
GGAGGGGAATACAATACCGG+AGG 0.719986 2_4:+52109020 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTAAAACATGTATTA+TGG + chr2_4:52107396-52107415 None:intergenic 10.0%
!!! TACTATTTTTCTATATAAAT+AGG + chr2_4:52108058-52108077 None:intergenic 10.0%
!!! TGATAATGTTAATTTTAAAA+CGG + chr2_4:52108116-52108135 None:intergenic 10.0%
!!! CAATTAAATTTTTAATTAGT+AGG - chr2_4:52108305-52108324 Msa0334040:intron 10.0%
!! TATATGTTACATTAAAAAAT+TGG + chr2_4:52108549-52108568 None:intergenic 10.0%
!!! TAAAAATAAGAAGAAATTTT+TGG - chr2_4:52108694-52108713 Msa0334040:intron 10.0%
!!! ATTTTTTAAAACATGTATTA+TGG + chr2_4:52107396-52107415 None:intergenic 10.0%
!!! TACTATTTTTCTATATAAAT+AGG + chr2_4:52108058-52108077 None:intergenic 10.0%
!!! TGATAATGTTAATTTTAAAA+CGG + chr2_4:52108116-52108135 None:intergenic 10.0%
!!! CAATTAAATTTTTAATTAGT+AGG - chr2_4:52108305-52108324 Msa0334040:intron 10.0%
!! TATATGTTACATTAAAAAAT+TGG + chr2_4:52108549-52108568 None:intergenic 10.0%
!!! TAAAAATAAGAAGAAATTTT+TGG - chr2_4:52108694-52108713 Msa0334040:intron 10.0%
!! TTAATAGATATTAATCGTTA+TGG + chr2_4:52108081-52108100 None:intergenic 15.0%
!!! TTATGAAGTTAATTTTTTGT+AGG + chr2_4:52108193-52108212 None:intergenic 15.0%
!!! ATTGTAGTAATTAGTTTTTA+AGG + chr2_4:52108289-52108308 None:intergenic 15.0%
!!! GTTAATATATATTTTAGCTA+TGG - chr2_4:52108977-52108996 Msa0334040:intron 15.0%
!! TTAATAGATATTAATCGTTA+TGG + chr2_4:52108081-52108100 None:intergenic 15.0%
!!! TTATGAAGTTAATTTTTTGT+AGG + chr2_4:52108193-52108212 None:intergenic 15.0%
!!! ATTGTAGTAATTAGTTTTTA+AGG + chr2_4:52108289-52108308 None:intergenic 15.0%
!!! GTTAATATATATTTTAGCTA+TGG - chr2_4:52108977-52108996 Msa0334040:intron 15.0%
!! GCAAAAATTAAATTGTTTCA+GGG + chr2_4:52107232-52107251 None:intergenic 20.0%
!!! GTTTTAATCTTTGTTATCTA+GGG + chr2_4:52107693-52107712 None:intergenic 20.0%
!!! TGTTTTAATCTTTGTTATCT+AGG + chr2_4:52107694-52107713 None:intergenic 20.0%
!!! GTTCTTATTTTTCTATTCTT+TGG + chr2_4:52107995-52108014 None:intergenic 20.0%
!! TATACGGTACATTAAAAATT+TGG + chr2_4:52108405-52108424 None:intergenic 20.0%
!! GTATTCGATTAACATTTATA+CGG + chr2_4:52108421-52108440 None:intergenic 20.0%
!! TTGTACATAAAATACATAGT+TGG + chr2_4:52108618-52108637 None:intergenic 20.0%
!! GCAAAAATTAAATTGTTTCA+GGG + chr2_4:52107232-52107251 None:intergenic 20.0%
!!! GTTTTAATCTTTGTTATCTA+GGG + chr2_4:52107693-52107712 None:intergenic 20.0%
!!! TGTTTTAATCTTTGTTATCT+AGG + chr2_4:52107694-52107713 None:intergenic 20.0%
!!! GTTCTTATTTTTCTATTCTT+TGG + chr2_4:52107995-52108014 None:intergenic 20.0%
!! TATACGGTACATTAAAAATT+TGG + chr2_4:52108405-52108424 None:intergenic 20.0%
!! GTATTCGATTAACATTTATA+CGG + chr2_4:52108421-52108440 None:intergenic 20.0%
!! TTGTACATAAAATACATAGT+TGG + chr2_4:52108618-52108637 None:intergenic 20.0%
!! TTTGAAATTTACAGTGATGA+CGG + chr2_4:52107062-52107081 None:intergenic 25.0%
! TAACGAAACAATTACATTGA+TGG - chr2_4:52107193-52107212 Msa0334040:intron 25.0%
! GGCAAAAATTAAATTGTTTC+AGG + chr2_4:52107233-52107252 None:intergenic 25.0%
!! TTGAACTCTTTTCTATCTTT+TGG + chr2_4:52107289-52107308 None:intergenic 25.0%
!! TTGACAATTTTGAATAGGTA+TGG + chr2_4:52107349-52107368 None:intergenic 25.0%
! TACCTATTCAAAATTGTCAA+AGG - chr2_4:52107349-52107368 Msa0334040:intron 25.0%
!! AACCTTTGACAATTTTGAAT+AGG + chr2_4:52107354-52107373 None:intergenic 25.0%
!! CAAACTATCTAAAATTGCTT+TGG + chr2_4:52107504-52107523 None:intergenic 25.0%
! GTTAGTATAAAGATGACAAA+CGG - chr2_4:52108802-52108821 Msa0334040:intron 25.0%
! TTGAGTAATTTGAAGATAAG+TGG - chr2_4:52108936-52108955 Msa0334040:intron 25.0%
!! AAGTGGTTAGTTAGATTAAT+CGG + chr2_4:52109019-52109038 None:intergenic 25.0%
!! TTTGAAATTTACAGTGATGA+CGG + chr2_4:52107062-52107081 None:intergenic 25.0%
! TAACGAAACAATTACATTGA+TGG - chr2_4:52107193-52107212 Msa0334040:intron 25.0%
! GGCAAAAATTAAATTGTTTC+AGG + chr2_4:52107233-52107252 None:intergenic 25.0%
!! TTGAACTCTTTTCTATCTTT+TGG + chr2_4:52107289-52107308 None:intergenic 25.0%
!! TTGACAATTTTGAATAGGTA+TGG + chr2_4:52107349-52107368 None:intergenic 25.0%
! TACCTATTCAAAATTGTCAA+AGG - chr2_4:52107349-52107368 Msa0334040:intron 25.0%
!! AACCTTTGACAATTTTGAAT+AGG + chr2_4:52107354-52107373 None:intergenic 25.0%
!! CAAACTATCTAAAATTGCTT+TGG + chr2_4:52107504-52107523 None:intergenic 25.0%
! GTTAGTATAAAGATGACAAA+CGG - chr2_4:52108802-52108821 Msa0334040:intron 25.0%
! TTGAGTAATTTGAAGATAAG+TGG - chr2_4:52108936-52108955 Msa0334040:intron 25.0%
!! AAGTGGTTAGTTAGATTAAT+CGG + chr2_4:52109019-52109038 None:intergenic 25.0%
! TGTTGTTGTTGCTATTATGT+TGG + chr2_4:52107254-52107273 None:intergenic 30.0%
TAAGATGAATGTCATTGAAC+TGG + chr2_4:52107453-52107472 None:intergenic 30.0%
GAAAAATTAAGATGAGACAG+TGG + chr2_4:52107482-52107501 None:intergenic 30.0%
! AAAAGAACTACCATTTTCCA+TGG + chr2_4:52107809-52107828 None:intergenic 30.0%
!! ATATAAATAGGAGCGTCTTT+AGG + chr2_4:52108046-52108065 None:intergenic 30.0%
AGGTTACTGTAATAGTGTAA+CGG - chr2_4:52108325-52108344 Msa0334040:intron 30.0%
CGGTACATTAAAAATTTGGT+AGG + chr2_4:52108401-52108420 None:intergenic 30.0%
!!! TCGTTTGTAAGTTTTAGAAG+AGG - chr2_4:52108871-52108890 Msa0334040:intron 30.0%
TAATTTGAAGATAAGTGGAG+AGG - chr2_4:52108941-52108960 Msa0334040:intron 30.0%
!! TTTTAGCTATGGAAGAACTT+AGG - chr2_4:52108988-52109007 Msa0334040:intron 30.0%
ATCAAACATGGTATGTACAT+TGG + chr2_4:52109113-52109132 None:intergenic 30.0%
ATGTACATACCATGTTTGAT+AGG - chr2_4:52109113-52109132 Msa0334040:CDS 30.0%
! TGTTGTTGTTGCTATTATGT+TGG + chr2_4:52107254-52107273 None:intergenic 30.0%
TAAGATGAATGTCATTGAAC+TGG + chr2_4:52107453-52107472 None:intergenic 30.0%
GAAAAATTAAGATGAGACAG+TGG + chr2_4:52107482-52107501 None:intergenic 30.0%
! AAAAGAACTACCATTTTCCA+TGG + chr2_4:52107809-52107828 None:intergenic 30.0%
!! ATATAAATAGGAGCGTCTTT+AGG + chr2_4:52108046-52108065 None:intergenic 30.0%
AGGTTACTGTAATAGTGTAA+CGG - chr2_4:52108325-52108344 Msa0334040:intron 30.0%
CGGTACATTAAAAATTTGGT+AGG + chr2_4:52108401-52108420 None:intergenic 30.0%
!!! TCGTTTGTAAGTTTTAGAAG+AGG - chr2_4:52108871-52108890 Msa0334040:intron 30.0%
TAATTTGAAGATAAGTGGAG+AGG - chr2_4:52108941-52108960 Msa0334040:intron 30.0%
!! TTTTAGCTATGGAAGAACTT+AGG - chr2_4:52108988-52109007 Msa0334040:intron 30.0%
ATCAAACATGGTATGTACAT+TGG + chr2_4:52109113-52109132 None:intergenic 30.0%
ATGTACATACCATGTTTGAT+AGG - chr2_4:52109113-52109132 Msa0334040:CDS 30.0%
!! ATTTACAGTGATGACGGAAA+AGG + chr2_4:52107056-52107075 None:intergenic 35.0%
ATGCACAAATGAGAGTGATT+TGG + chr2_4:52107094-52107113 None:intergenic 35.0%
TCATTGAACTGGAGTCAAAT+GGG + chr2_4:52107442-52107461 None:intergenic 35.0%
AGTTTGTATTCGATGTGTGA+TGG - chr2_4:52107548-52107567 Msa0334040:intron 35.0%
AAGAAAACAATCGTGGACAT+TGG + chr2_4:52107878-52107897 None:intergenic 35.0%
! AATGTCCACGATTGTTTTCT+TGG - chr2_4:52107877-52107896 Msa0334040:intron 35.0%
!!! TTTTGGAACTAATGCCAAGT+AGG - chr2_4:52108711-52108730 Msa0334040:intron 35.0%
! AATGTTACAAACGCGGATTT+TGG + chr2_4:52108848-52108867 None:intergenic 35.0%
!! TATGTACATTGGAAGTGCTA+AGG + chr2_4:52109102-52109121 None:intergenic 35.0%
!! ATTTACAGTGATGACGGAAA+AGG + chr2_4:52107056-52107075 None:intergenic 35.0%
ATGCACAAATGAGAGTGATT+TGG + chr2_4:52107094-52107113 None:intergenic 35.0%
TCATTGAACTGGAGTCAAAT+GGG + chr2_4:52107442-52107461 None:intergenic 35.0%
AGTTTGTATTCGATGTGTGA+TGG - chr2_4:52107548-52107567 Msa0334040:intron 35.0%
AAGAAAACAATCGTGGACAT+TGG + chr2_4:52107878-52107897 None:intergenic 35.0%
! AATGTCCACGATTGTTTTCT+TGG - chr2_4:52107877-52107896 Msa0334040:intron 35.0%
!!! TTTTGGAACTAATGCCAAGT+AGG - chr2_4:52108711-52108730 Msa0334040:intron 35.0%
! AATGTTACAAACGCGGATTT+TGG + chr2_4:52108848-52108867 None:intergenic 35.0%
!! TATGTACATTGGAAGTGCTA+AGG + chr2_4:52109102-52109121 None:intergenic 35.0%
GTCATTGAACTGGAGTCAAA+TGG + chr2_4:52107443-52107462 None:intergenic 40.0%
! TTTGATGTTGCTTGCAACAG+TGG + chr2_4:52107584-52107603 None:intergenic 40.0%
GTTGCAAGCAACATCAAATG+AGG - chr2_4:52107586-52107605 Msa0334040:intron 40.0%
! GTTATCTAGGGTGATCGAAT+TGG + chr2_4:52107681-52107700 None:intergenic 40.0%
!! ATCCTTTAGAACCAACTCCA+TGG - chr2_4:52107789-52107808 Msa0334040:intron 40.0%
!! TTCCATGGAGTTGGTTCTAA+AGG + chr2_4:52107794-52107813 None:intergenic 40.0%
AGAACCAACTCCATGGAAAA+TGG - chr2_4:52107796-52107815 Msa0334040:intron 40.0%
! ACTACCATTTTCCATGGAGT+TGG + chr2_4:52107803-52107822 None:intergenic 40.0%
TTTCGCCAAGAAAACAATCG+TGG + chr2_4:52107885-52107904 None:intergenic 40.0%
! TGCCAAGTAGGATTTTGTTG+AGG - chr2_4:52108723-52108742 Msa0334040:intron 40.0%
CACCTCAACAAAATCCTACT+TGG + chr2_4:52108728-52108747 None:intergenic 40.0%
! CAAGTAGGATTTTGTTGAGG+TGG - chr2_4:52108726-52108745 Msa0334040:intron 40.0%
ACGACACAATGTTACAAACG+CGG + chr2_4:52108855-52108874 None:intergenic 40.0%
AACCACTTGATTCATGCACA+TGG - chr2_4:52109031-52109050 Msa0334040:CDS 40.0%
AACCATGTGCATGAATCAAG+TGG + chr2_4:52109036-52109055 None:intergenic 40.0%
GATTCATGCACATGGTTCAT+AGG - chr2_4:52109039-52109058 Msa0334040:CDS 40.0%
GTCATTGAACTGGAGTCAAA+TGG + chr2_4:52107443-52107462 None:intergenic 40.0%
! TTTGATGTTGCTTGCAACAG+TGG + chr2_4:52107584-52107603 None:intergenic 40.0%
GTTGCAAGCAACATCAAATG+AGG - chr2_4:52107586-52107605 Msa0334040:intron 40.0%
! GTTATCTAGGGTGATCGAAT+TGG + chr2_4:52107681-52107700 None:intergenic 40.0%
!! ATCCTTTAGAACCAACTCCA+TGG - chr2_4:52107789-52107808 Msa0334040:intron 40.0%
!! TTCCATGGAGTTGGTTCTAA+AGG + chr2_4:52107794-52107813 None:intergenic 40.0%
AGAACCAACTCCATGGAAAA+TGG - chr2_4:52107796-52107815 Msa0334040:intron 40.0%
! ACTACCATTTTCCATGGAGT+TGG + chr2_4:52107803-52107822 None:intergenic 40.0%
TTTCGCCAAGAAAACAATCG+TGG + chr2_4:52107885-52107904 None:intergenic 40.0%
! TGCCAAGTAGGATTTTGTTG+AGG - chr2_4:52108723-52108742 Msa0334040:intron 40.0%
CACCTCAACAAAATCCTACT+TGG + chr2_4:52108728-52108747 None:intergenic 40.0%
! CAAGTAGGATTTTGTTGAGG+TGG - chr2_4:52108726-52108745 Msa0334040:intron 40.0%
ACGACACAATGTTACAAACG+CGG + chr2_4:52108855-52108874 None:intergenic 40.0%
AACCACTTGATTCATGCACA+TGG - chr2_4:52109031-52109050 Msa0334040:CDS 40.0%
AACCATGTGCATGAATCAAG+TGG + chr2_4:52109036-52109055 None:intergenic 40.0%
GATTCATGCACATGGTTCAT+AGG - chr2_4:52109039-52109058 Msa0334040:CDS 40.0%
! TGAACGAGTGAAGCGGATTT+GGG + chr2_4:52106978-52106997 None:intergenic 45.0%
! ATGAACGAGTGAAGCGGATT+TGG + chr2_4:52106979-52106998 None:intergenic 45.0%
AAGGGAGGGGAATACAATAC+CGG + chr2_4:52107024-52107043 None:intergenic 45.0%
TCGTGAACATCATTCCCTCT+TGG - chr2_4:52107612-52107631 Msa0334040:intron 45.0%
TTCAAAGAGCAGCACCAAGA+GGG + chr2_4:52107629-52107648 None:intergenic 45.0%
! AATCGTGGACATTGGTTGTG+AGG + chr2_4:52107870-52107889 None:intergenic 45.0%
! AGATGACAAACGGAGAGTGT+TGG - chr2_4:52108812-52108831 Msa0334040:intron 45.0%
!!! ACGGAGAGTGTTGGATTTTG+TGG - chr2_4:52108821-52108840 Msa0334040:intron 45.0%
! TGAACGAGTGAAGCGGATTT+GGG + chr2_4:52106978-52106997 None:intergenic 45.0%
! ATGAACGAGTGAAGCGGATT+TGG + chr2_4:52106979-52106998 None:intergenic 45.0%
AAGGGAGGGGAATACAATAC+CGG + chr2_4:52107024-52107043 None:intergenic 45.0%
TCGTGAACATCATTCCCTCT+TGG - chr2_4:52107612-52107631 Msa0334040:intron 45.0%
TTCAAAGAGCAGCACCAAGA+GGG + chr2_4:52107629-52107648 None:intergenic 45.0%
! AATCGTGGACATTGGTTGTG+AGG + chr2_4:52107870-52107889 None:intergenic 45.0%
! AGATGACAAACGGAGAGTGT+TGG - chr2_4:52108812-52108831 Msa0334040:intron 45.0%
!!! ACGGAGAGTGTTGGATTTTG+TGG - chr2_4:52108821-52108840 Msa0334040:intron 45.0%
!! ATTTAATGTTAAATAAAAAA+CGG - chr2_4:52108637-52108656 Msa0334040:intron 5.0%
!! ATTTAATGTTAAATAAAAAA+CGG - chr2_4:52108637-52108656 Msa0334040:intron 5.0%
!! AAAGGCATCGAAGGAAGGGA+GGG + chr2_4:52107038-52107057 None:intergenic 50.0%
!! AAAAGGCATCGAAGGAAGGG+AGG + chr2_4:52107039-52107058 None:intergenic 50.0%
!! CGGAAAAGGCATCGAAGGAA+GGG + chr2_4:52107042-52107061 None:intergenic 50.0%
!! ACGGAAAAGGCATCGAAGGA+AGG + chr2_4:52107043-52107062 None:intergenic 50.0%
!! GATGACGGAAAAGGCATCGA+AGG + chr2_4:52107047-52107066 None:intergenic 50.0%
GTTCAAAGAGCAGCACCAAG+AGG + chr2_4:52107630-52107649 None:intergenic 50.0%
GTTGTGAGGTTGTTCGTGCT+TGG + chr2_4:52107856-52107875 None:intergenic 50.0%
!! AAAGGCATCGAAGGAAGGGA+GGG + chr2_4:52107038-52107057 None:intergenic 50.0%
!! AAAAGGCATCGAAGGAAGGG+AGG + chr2_4:52107039-52107058 None:intergenic 50.0%
!! CGGAAAAGGCATCGAAGGAA+GGG + chr2_4:52107042-52107061 None:intergenic 50.0%
!! ACGGAAAAGGCATCGAAGGA+AGG + chr2_4:52107043-52107062 None:intergenic 50.0%
!! GATGACGGAAAAGGCATCGA+AGG + chr2_4:52107047-52107066 None:intergenic 50.0%
GTTCAAAGAGCAGCACCAAG+AGG + chr2_4:52107630-52107649 None:intergenic 50.0%
GTTGTGAGGTTGTTCGTGCT+TGG + chr2_4:52107856-52107875 None:intergenic 50.0%
GCTCGGCAAGCAATGAACGT+CGG - chr2_4:52106939-52106958 Msa0334040:CDS 55.0%
! AAGCGGATTTGGGTGAGGAG+AGG + chr2_4:52106968-52106987 None:intergenic 55.0%
! GAGTGAAGCGGATTTGGGTG+AGG + chr2_4:52106973-52106992 None:intergenic 55.0%
GGAGGGGAATACAATACCGG+AGG + chr2_4:52107021-52107040 None:intergenic 55.0%
!! AAGGCATCGAAGGAAGGGAG+GGG + chr2_4:52107037-52107056 None:intergenic 55.0%
GCTCGGCAAGCAATGAACGT+CGG - chr2_4:52106939-52106958 Msa0334040:CDS 55.0%
! AAGCGGATTTGGGTGAGGAG+AGG + chr2_4:52106968-52106987 None:intergenic 55.0%
! GAGTGAAGCGGATTTGGGTG+AGG + chr2_4:52106973-52106992 None:intergenic 55.0%
GGAGGGGAATACAATACCGG+AGG + chr2_4:52107021-52107040 None:intergenic 55.0%
!! AAGGCATCGAAGGAAGGGAG+GGG + chr2_4:52107037-52107056 None:intergenic 55.0%
GCGGCGATGAACGAGTGAAG+CGG + chr2_4:52106985-52107004 None:intergenic 60.0%
GCTTCACTCGTTCATCGCCG+CGG - chr2_4:52106984-52107003 Msa0334040:intron 60.0%
GCGGCGATGAACGAGTGAAG+CGG + chr2_4:52106985-52107004 None:intergenic 60.0%
GCTTCACTCGTTCATCGCCG+CGG - chr2_4:52106984-52107003 Msa0334040:intron 60.0%
ACTCGTTCATCGCCGCGGCA+TGG - chr2_4:52106989-52107008 Msa0334040:intron 65.0%
ACTCGTTCATCGCCGCGGCA+TGG - chr2_4:52106989-52107008 Msa0334040:intron 65.0%
CGGCGTGGACAGCAGCAGCT+CGG - chr2_4:52106922-52106941 Msa0334040:CDS 70.0%
GTTCATCGCCGCGGCATGGC+TGG - chr2_4:52106993-52107012 Msa0334040:intron 70.0%
CGGAGGAACCAGCCATGCCG+CGG + chr2_4:52107004-52107023 None:intergenic 70.0%
! CGCGGCATGGCTGGTTCCTC+CGG - chr2_4:52107002-52107021 Msa0334040:intron 70.0%
CGGCGTGGACAGCAGCAGCT+CGG - chr2_4:52106922-52106941 Msa0334040:CDS 70.0%
GTTCATCGCCGCGGCATGGC+TGG - chr2_4:52106993-52107012 Msa0334040:intron 70.0%
CGGAGGAACCAGCCATGCCG+CGG + chr2_4:52107004-52107023 None:intergenic 70.0%
! CGCGGCATGGCTGGTTCCTC+CGG - chr2_4:52107002-52107021 Msa0334040:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 52106918 52109142 52106918 ID=Msa0334040;Name=Msa0334040
chr2_4 mRNA 52106918 52109142 52106918 ID=Msa0334040-mRNA-1;Parent=Msa0334040;Name=Msa0334040-mRNA-1;_AED=0.74;_eAED=0.74;_QI=0|0|0|0.5|0|0.5|2|0|77
chr2_4 exon 52108991 52109142 52108991 ID=Msa0334040-mRNA-1:exon:15706;Parent=Msa0334040-mRNA-1
chr2_4 exon 52106918 52106999 52106918 ID=Msa0334040-mRNA-1:exon:15705;Parent=Msa0334040-mRNA-1
chr2_4 CDS 52108991 52109142 52108991 ID=Msa0334040-mRNA-1:cds;Parent=Msa0334040-mRNA-1
chr2_4 CDS 52106918 52106999 52106918 ID=Msa0334040-mRNA-1:cds;Parent=Msa0334040-mRNA-1
Gene Sequence

>Msa0334040

ATGGCGGCGTGGACAGCAGCAGCTCGGCAAGCAATGAACGTCGGACGCCTCTCCTCACCCAAATCCGCTTCACTCGTTCATCGCCGCGGCATGGCTGGTTCCTCCGGTATTGTATTCCCCTCCCTTCCTTCGATGCCTTTTCCGTCATCACTGCAGTTTTTGTATCTAAAGTCTATTCAATCTACTTCATCCTTAGCACTTCCAATGTACATACCATGTTTGATAGGATTTTGA

Protein sequence

>Msa0334040

MAAWTAAARQAMNVGRLSSPKSASLVHRRGMAGSSGIVFPSLPSMPFPSSLQFLYLKSIQSTSSLALPMYIPCLIGF*