AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0356890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0356890 MtrunA17_Chr3g0091371 100.000 70 0 0 1 70 1 70 9.49e-46 141
Msa0356890 MtrunA17_Chr7g0235781 97.143 70 2 0 1 70 1 70 8.16e-45 139
Msa0356890 MtrunA17_Chr3g0091381 70.732 41 12 0 32 72 4 44 4.79e-12 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0356890 AT1G48140.2 81.579 76 14 0 1 76 1 76 1.56e-41 130
Msa0356890 AT1G48140.1 77.922 77 17 0 1 77 1 77 8.74e-41 129

Find 39 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTGCCATCACTGCTTTA+TGG 0.201906 3_1:-37178128 Msa0356890:CDS
CGGCCTCCTTCTTCATCAAT+TGG 0.274386 3_1:-37181559 Msa0356890:intron
AATTGCCATCACTGCTTTAT+GGG 0.343013 3_1:-37178127 Msa0356890:CDS
TTAGACTCCGGCGGAGGTTA+CGG 0.406370 3_1:+37181590 None:intergenic
GCCATCACTGCTTTATGGGT+TGG 0.406869 3_1:-37178123 Msa0356890:CDS
ACCAACCAAGTATGACTTTG+AGG 0.427005 3_1:+37178078 None:intergenic
AGGATGTTACGGTCTATTGA+TGG 0.435428 3_1:-37177714 Msa0356890:CDS
GAGGCGCGGTGGTTGATATG+AGG 0.442019 3_1:+37181653 None:intergenic
TCATTCCTCAAAGTCATACT+TGG 0.460967 3_1:-37178083 Msa0356890:CDS
AGAAGCCCTGTTGTTGCAAA+AGG 0.467171 3_1:-37177654 Msa0356890:CDS
GAATGATAGAAGTTTGTAGA+AGG 0.473750 3_1:+37178100 None:intergenic
GTCGTGTCTTTAGGATGTTA+CGG 0.478343 3_1:-37177725 Msa0356890:CDS
GGTCTATTGATGGTTGGTGT+TGG 0.511980 3_1:-37177704 Msa0356890:CDS
AAAGACACGACAAAATAGAT+TGG 0.512576 3_1:+37177737 None:intergenic
AGGTTACGGTGGACTCAGAC+TGG 0.525991 3_1:+37181604 None:intergenic
AACAGCTTAGACTCCGGCGG+AGG 0.535309 3_1:+37181584 None:intergenic
TCCTCAAAGTCATACTTGGT+TGG 0.545138 3_1:-37178079 Msa0356890:intron
GAGGCATGAGATGGCGGCGA+CGG 0.546304 3_1:+37181629 None:intergenic
AGGCGCGGTGGTTGATATGA+GGG 0.548459 3_1:+37181654 None:intergenic
GCCAACCCATAAAGCAGTGA+TGG 0.562669 3_1:+37178122 None:intergenic
TATTGTAAAGATATTGTCAC+TGG 0.566011 3_1:-37178151 Msa0356890:CDS
GCCGAAAACAGCTTAGACTC+CGG 0.568722 3_1:+37181578 None:intergenic
TACACACCAATTGATGAAGA+AGG 0.573386 3_1:+37181553 None:intergenic
TGCAACAACAGGGCTTCTTG+AGG 0.575185 3_1:+37177659 None:intergenic
CGGTGGACTCAGACTGGCTG+AGG 0.575523 3_1:+37181610 None:intergenic
CTGGCTGAGGCATGAGATGG+CGG 0.580343 3_1:+37181623 None:intergenic
AGGGCTTCTTGAGGACAAGT+AGG 0.584926 3_1:+37177668 None:intergenic
GAGTCCACCGTAACCTCCGC+CGG 0.594004 3_1:-37181597 Msa0356890:five_prime_UTR
AGACTGGCTGAGGCATGAGA+TGG 0.598962 3_1:+37181620 None:intergenic
GACTCCGGCGGAGGTTACGG+TGG 0.611363 3_1:+37181593 None:intergenic
ATGGCGGCGACGGTGAGGCG+CGG 0.612006 3_1:+37181639 None:intergenic
GCGGCGACGGTGAGGCGCGG+TGG 0.612376 3_1:+37181642 None:intergenic
ATGAGATGGCGGCGACGGTG+AGG 0.620233 3_1:+37181634 None:intergenic
TGTTACGGTCTATTGATGGT+TGG 0.623593 3_1:-37177710 Msa0356890:CDS
CAATTACTAATGCTCAGAGG+TGG 0.654108 3_1:+37177625 None:intergenic
CGCGGTGGTTGATATGAGGG+CGG 0.658085 3_1:+37181657 None:intergenic
GAAAACAGCTTAGACTCCGG+CGG 0.669709 3_1:+37181581 None:intergenic
ACACCAATTGATGAAGAAGG+AGG 0.684100 3_1:+37181556 None:intergenic
ATGCAATTACTAATGCTCAG+AGG 0.724065 3_1:+37177622 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGATAAAATATTTAGAAA+CGG - chr3_1:37178461-37178480 Msa0356890:intron 10.0%
!!! TTAACAAATTTTAACTTTTA+AGG - chr3_1:37178550-37178569 Msa0356890:intron 10.0%
!!! ACACTTAATTTTAATTAAAA+AGG + chr3_1:37180575-37180594 None:intergenic 10.0%
!!! AAATATAAAAAAGCATAAAA+AGG + chr3_1:37181500-37181519 None:intergenic 10.0%
!!! CTTTTTTTTTTTTTTTTGAG+AGG + chr3_1:37178436-37178455 None:intergenic 15.0%
!!! TGTTTTCTTTTTTAGTATTT+AGG - chr3_1:37178683-37178702 Msa0356890:intron 15.0%
!!! CTTATTATTTAAAATAGTGT+TGG + chr3_1:37179336-37179355 None:intergenic 15.0%
!! ATAATAAGTTTAAACACTAA+AGG - chr3_1:37179348-37179367 Msa0356890:intron 15.0%
!! TAATAAGTTTAAACACTAAA+GGG - chr3_1:37179349-37179368 Msa0356890:intron 15.0%
!!! CTTATTATTTAAAATAGTGT+TGG + chr3_1:37179336-37179355 None:intergenic 15.0%
!!! ATGTTTGTTTTATTCATTTA+GGG - chr3_1:37179796-37179815 Msa0356890:intron 15.0%
!! CAAATTATTGTAAATATCAA+AGG + chr3_1:37179864-37179883 None:intergenic 15.0%
!!! AAATTTTTTATGCAAAATCA+GGG + chr3_1:37180301-37180320 None:intergenic 15.0%
!! TAAAAAGGAAAAAGAAATTA+TGG + chr3_1:37180560-37180579 None:intergenic 15.0%
!! AATGTATCAATTTCATTAAA+TGG + chr3_1:37180638-37180657 None:intergenic 15.0%
!! AATTAAAGTAAAACATATGA+TGG + chr3_1:37181274-37181293 None:intergenic 15.0%
!! GAAAAATGTGTAAATGAAAA+TGG + chr3_1:37177798-37177817 None:intergenic 20.0%
!!! AGTTAAAATTTGTTAACAAC+CGG + chr3_1:37178546-37178565 None:intergenic 20.0%
!! ACATAATTCAATGTAATCAT+AGG + chr3_1:37178766-37178785 None:intergenic 20.0%
!! GAAAAATAAATAGCTTAAAC+AGG + chr3_1:37179265-37179284 None:intergenic 20.0%
!!! TAGTTTACCTTTTAAGTAAA+TGG - chr3_1:37179302-37179321 Msa0356890:intron 20.0%
!! ATTAGTAATTTGGATCTATT+TGG - chr3_1:37179596-37179615 Msa0356890:intron 20.0%
!!! AATAATCATTTGCTGAAATT+AGG - chr3_1:37179732-37179751 Msa0356890:intron 20.0%
!!! GATGTTTGTTTTATTCATTT+AGG - chr3_1:37179795-37179814 Msa0356890:intron 20.0%
!!! TGTTTGTTTTATTCATTTAG+GGG - chr3_1:37179797-37179816 Msa0356890:intron 20.0%
!! TTTACATCCTTATTATTGAT+GGG - chr3_1:37180122-37180141 Msa0356890:intron 20.0%
!! CAAATAAATACTAGAACAAT+AGG + chr3_1:37180201-37180220 None:intergenic 20.0%
!!! CAAATTTTTTATGCAAAATC+AGG + chr3_1:37180302-37180321 None:intergenic 20.0%
!!! TTCTGCTATCTTATTTAATA+AGG - chr3_1:37180775-37180794 Msa0356890:intron 20.0%
!!! TTTTTTTTTTTTGTGGTCTA+TGG - chr3_1:37181299-37181318 Msa0356890:intron 20.0%
!!! TAAAAAAGCATAAAAAGGTT+TGG + chr3_1:37181495-37181514 None:intergenic 20.0%
!! TGCTTTTCATTTTATGTGAT+CGG - chr3_1:37177842-37177861 Msa0356890:intron 25.0%
!!! GTTGTTTTCAAAAACTATCT+TGG + chr3_1:37177929-37177948 None:intergenic 25.0%
! ACAAATTTCAGTGTAATCAT+AGG + chr3_1:37178161-37178180 None:intergenic 25.0%
! CAAATGCAACTAAAATGATA+AGG + chr3_1:37178492-37178511 None:intergenic 25.0%
! TTGTAAATCAATTGTATTGC+TGG + chr3_1:37178903-37178922 None:intergenic 25.0%
!!! CGAGTCTTATACTTTTTATT+AGG - chr3_1:37178994-37179013 Msa0356890:intron 25.0%
!!! ATTATACCACCATTACTTTT+AGG - chr3_1:37179133-37179152 Msa0356890:intron 25.0%
! AAATCTATGATCACAAACAA+TGG - chr3_1:37179234-37179253 Msa0356890:intron 25.0%
! TAATTTGGATCTATTTGGTT+AGG - chr3_1:37179601-37179620 Msa0356890:intron 25.0%
! GTTTACATCCTTATTATTGA+TGG - chr3_1:37180121-37180140 Msa0356890:intron 25.0%
! AGTATTTATTTGCATAACTC+TGG - chr3_1:37180209-37180228 Msa0356890:intron 25.0%
!! AATATCTGAAATGTAGTGTT+TGG + chr3_1:37180355-37180374 None:intergenic 25.0%
! TAAAATGCAGTAAAAGTTAC+TGG - chr3_1:37180498-37180517 Msa0356890:intron 25.0%
!!! ATTTTTAGTTCAGCTTCTTA+AGG - chr3_1:37180857-37180876 Msa0356890:intron 25.0%
! ATCACAAAAGTTAAGTATGT+GGG + chr3_1:37181047-37181066 None:intergenic 25.0%
! TATCACAAAAGTTAAGTATG+TGG + chr3_1:37181048-37181067 None:intergenic 25.0%
! TATTGTAAAGATATTGTCAC+TGG - chr3_1:37181165-37181184 Msa0356890:intron 25.0%
GTTATATGCTGCAAATAAGT+TGG - chr3_1:37178039-37178058 Msa0356890:intron 30.0%
TCTCAAATTATTATCCGTGT+CGG - chr3_1:37178186-37178205 Msa0356890:intron 30.0%
!! TCCATAGATTTTAGGAGATA+GGG - chr3_1:37178245-37178264 Msa0356890:intron 30.0%
!!! TCATTTTAGTTGCATTTGCA+TGG - chr3_1:37178494-37178513 Msa0356890:intron 30.0%
!!! CATTTTAGTTGCATTTGCAT+GGG - chr3_1:37178495-37178514 Msa0356890:intron 30.0%
AAACACGTTGAATTAGATCA+TGG + chr3_1:37178641-37178660 None:intergenic 30.0%
! TATTTAGGACAAATACTCCT+CGG - chr3_1:37178698-37178717 Msa0356890:intron 30.0%
TGAAGAGCCATTTACTTAAA+AGG + chr3_1:37179312-37179331 None:intergenic 30.0%
! TAAAATAGTGTTGGATGAAC+AGG + chr3_1:37179546-37179565 None:intergenic 30.0%
! AATCATTTGCTGAAATTAGG+TGG - chr3_1:37179735-37179754 Msa0356890:intron 30.0%
TTAAACTTCCAAGTGATGTT+GGG - chr3_1:37179940-37179959 Msa0356890:intron 30.0%
AATATAACTAAAAGCCCTTG+CGG + chr3_1:37179971-37179990 None:intergenic 30.0%
GAACTGTGAAATGAATTTCA+TGG - chr3_1:37179991-37180010 Msa0356890:intron 30.0%
AACTATTTACAACTTCCATC+AGG + chr3_1:37180025-37180044 None:intergenic 30.0%
!!! AATCATGGAGTGTTTTAGAA+CGG + chr3_1:37180175-37180194 None:intergenic 30.0%
TAGAACAATAGGAACAATCA+TGG + chr3_1:37180190-37180209 None:intergenic 30.0%
CACTACATTTCAGATATTGT+AGG - chr3_1:37180357-37180376 Msa0356890:intron 30.0%
GTGGTGAAATTAAAAAGTCA+TGG - chr3_1:37180405-37180424 Msa0356890:intron 30.0%
AGGAAAAAGAAATTATGGCA+AGG + chr3_1:37180555-37180574 None:intergenic 30.0%
! TTGTCATTAGTGTTTTGTGA+TGG - chr3_1:37180665-37180684 Msa0356890:intron 30.0%
CGTATTCATGGTAAAATAGA+GGG + chr3_1:37181022-37181041 None:intergenic 30.0%
! TGTTGTGTATTTTCGAAAAG+AGG + chr3_1:37181089-37181108 None:intergenic 30.0%
GAATGATAGAAGTTTGTAGA+AGG + chr3_1:37181219-37181238 None:intergenic 30.0%
! TCTATGGTACAATGATGTTT+TGG - chr3_1:37181315-37181334 Msa0356890:intron 30.0%
! CTATGGTACAATGATGTTTT+GGG - chr3_1:37181316-37181335 Msa0356890:intron 30.0%
! TATGGTACAATGATGTTTTG+GGG - chr3_1:37181317-37181336 Msa0356890:intron 30.0%
TGTATTTCATGTCATAGCTT+TGG + chr3_1:37181362-37181381 None:intergenic 30.0%
! ATAAAAAGGTTTGGTTAAGC+TGG + chr3_1:37181486-37181505 None:intergenic 30.0%
CTGCATAAAGAATAGAAGTA+TGG + chr3_1:37181556-37181575 None:intergenic 30.0%
AAAGACACGACAAAATAGAT+TGG + chr3_1:37181582-37181601 None:intergenic 30.0%
! ATCTATTTTGTCGTGTCTTT+AGG - chr3_1:37181582-37181601 Msa0356890:five_prime_UTR 30.0%
TACACACCAATTGATGAAGA+AGG + chr3_1:37177766-37177785 None:intergenic 35.0%
! TCATTTTATGTGATCGGAGA+TGG - chr3_1:37177848-37177867 Msa0356890:intron 35.0%
!! CTCCATAGATTTTAGGAGAT+AGG - chr3_1:37178244-37178263 Msa0356890:intron 35.0%
ACCCTATCTCCTAAAATCTA+TGG + chr3_1:37178249-37178268 None:intergenic 35.0%
GAAGCAAAGCCTAAAAGTAA+TGG + chr3_1:37179145-37179164 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG + chr3_1:37179449-37179468 None:intergenic 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - chr3_1:37179448-37179467 Msa0356890:intron 35.0%
CATGATGTCTGACTTATTGA+TGG - chr3_1:37179699-37179718 Msa0356890:intron 35.0%
!! AACAAGGGCATTTAGCTTAT+TGG - chr3_1:37179908-37179927 Msa0356890:intron 35.0%
!! ACAAGGGCATTTAGCTTATT+GGG - chr3_1:37179909-37179928 Msa0356890:intron 35.0%
CAACATCACTTGGAAGTTTA+AGG + chr3_1:37179941-37179960 None:intergenic 35.0%
CTTAAACTTCCAAGTGATGT+TGG - chr3_1:37179939-37179958 Msa0356890:intron 35.0%
ATTTACAACTTCCATCAGGA+GGG + chr3_1:37180021-37180040 None:intergenic 35.0%
TATTTACAACTTCCATCAGG+AGG + chr3_1:37180022-37180041 None:intergenic 35.0%
AGAAGCTCCCATCAATAATA+AGG + chr3_1:37180132-37180151 None:intergenic 35.0%
!!! TTTTAGAACGGGTTAACAAC+TGG + chr3_1:37180163-37180182 None:intergenic 35.0%
!!! ATCATGGAGTGTTTTAGAAC+GGG + chr3_1:37180174-37180193 None:intergenic 35.0%
! ATTTGCATAACTCTGGTTTG+CGG - chr3_1:37180216-37180235 Msa0356890:intron 35.0%
ATATCCACGTATAAGCTTCA+TGG - chr3_1:37180448-37180467 Msa0356890:intron 35.0%
TAAACCATGAAGCTTATACG+TGG + chr3_1:37180455-37180474 None:intergenic 35.0%
ATAAAGCAGACACGTAATTC+AGG + chr3_1:37180724-37180743 None:intergenic 35.0%
!! TGTTTTAGACGTTTAGCTCA+CGG - chr3_1:37180890-37180909 Msa0356890:intron 35.0%
GCGTATTCATGGTAAAATAG+AGG + chr3_1:37181023-37181042 None:intergenic 35.0%
TAATTGCCATCACTGCTTTA+TGG - chr3_1:37181188-37181207 Msa0356890:intron 35.0%
AATTGCCATCACTGCTTTAT+GGG - chr3_1:37181189-37181208 Msa0356890:intron 35.0%
TCATTCCTCAAAGTCATACT+TGG - chr3_1:37181233-37181252 Msa0356890:intron 35.0%
CACATTATAAGTCCTCAATG+GGG + chr3_1:37181385-37181404 None:intergenic 35.0%
GCACATTATAAGTCCTCAAT+GGG + chr3_1:37181386-37181405 None:intergenic 35.0%
TGCACATTATAAGTCCTCAA+TGG + chr3_1:37181387-37181406 None:intergenic 35.0%
! ACATACCTTTTGCAACAACA+GGG + chr3_1:37181670-37181689 None:intergenic 35.0%
! AACATACCTTTTGCAACAAC+AGG + chr3_1:37181671-37181690 None:intergenic 35.0%
ACACCAATTGATGAAGAAGG+AGG + chr3_1:37177763-37177782 None:intergenic 40.0%
! TGTAATCATAGGTGTCGTGT+CGG + chr3_1:37178150-37178169 None:intergenic 40.0%
CTCCTAAAATCTATGGAGCA+CGG + chr3_1:37178242-37178261 None:intergenic 40.0%
TGAAACTTCCAAGTGATGCT+GGG - chr3_1:37178275-37178294 Msa0356890:intron 40.0%
! AACTATTTGCCACTTCCATC+AGG + chr3_1:37178360-37178379 None:intergenic 40.0%
CTTCTGTTGTCATGCATGAT+TGG - chr3_1:37178382-37178401 Msa0356890:intron 40.0%
TGTTAACAACCGGTACATGA+TGG + chr3_1:37178536-37178555 None:intergenic 40.0%
! TGTAATCATAGGTGTCGTGT+CGG + chr3_1:37178150-37178169 None:intergenic 40.0%
TATTATCATTGTCCGCGTGT+TGG - chr3_1:37178799-37178818 Msa0356890:intron 40.0%
AGGAAGATAGCTATGAAGCA+CGG + chr3_1:37178856-37178875 None:intergenic 40.0%
TTGCTGGACCCAAAAGAAAT+GGG + chr3_1:37178887-37178906 None:intergenic 40.0%
ATTGCTGGACCCAAAAGAAA+TGG + chr3_1:37178888-37178907 None:intergenic 40.0%
GCAAAGCCTAAAAGTAATGG+TGG + chr3_1:37179142-37179161 None:intergenic 40.0%
TTAAACACTAAAGGGCAACC+CGG - chr3_1:37179357-37179376 Msa0356890:intron 40.0%
CAGCCTCTTGTGTAAAAACA+GGG + chr3_1:37179454-37179473 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG + chr3_1:37179455-37179474 None:intergenic 40.0%
GTTGTTATCATGTGACCGTA+AGG + chr3_1:37179499-37179518 None:intergenic 40.0%
TGGATGAACAGGAAAAACCT+TGG + chr3_1:37179535-37179554 None:intergenic 40.0%
! TTTTCAGACACATCTGCCTA+TGG - chr3_1:37179625-37179644 Msa0356890:intron 40.0%
! TTTGCATAACTCTGGTTTGC+GGG - chr3_1:37180217-37180236 Msa0356890:intron 40.0%
AAATGTAGTGTTTGGATCCC+TGG + chr3_1:37180347-37180366 None:intergenic 40.0%
!!! CACAGCATGTTTTGTTTGTG+TGG - chr3_1:37180386-37180405 Msa0356890:intron 40.0%
!! AACTTCGTATGTGCTGACTA+AGG - chr3_1:37180526-37180545 Msa0356890:intron 40.0%
TGTCCATGTTGTGTCTATGT+TGG - chr3_1:37180605-37180624 Msa0356890:intron 40.0%
CAACCAACATAGACACAACA+TGG + chr3_1:37180611-37180630 None:intergenic 40.0%
GCATGTGTCTGACATGAATA+TGG - chr3_1:37180696-37180715 Msa0356890:intron 40.0%
TCCTCAAAGTCATACTTGGT+TGG - chr3_1:37181237-37181256 Msa0356890:intron 40.0%
ACCAACCAAGTATGACTTTG+AGG + chr3_1:37181241-37181260 None:intergenic 40.0%
CAAAGTCATACTTGGTTGGT+AGG - chr3_1:37181241-37181260 Msa0356890:intron 40.0%
ACATGAAATACACCCCATTG+AGG - chr3_1:37181370-37181389 Msa0356890:intron 40.0%
TAGACTACCGAAGAGATTGT+TGG - chr3_1:37181413-37181432 Msa0356890:intron 40.0%
CCATCTTCCAACAATCTCTT+CGG + chr3_1:37181423-37181442 None:intergenic 40.0%
AGACTTTGCTTGTAAGGCTT+AGG + chr3_1:37181453-37181472 None:intergenic 40.0%
GATCGAAGACTTTGCTTGTA+AGG + chr3_1:37181459-37181478 None:intergenic 40.0%
!! GTCGTGTCTTTAGGATGTTA+CGG - chr3_1:37181591-37181610 Msa0356890:five_prime_UTR 40.0%
AGGATGTTACGGTCTATTGA+TGG - chr3_1:37181602-37181621 Msa0356890:five_prime_UTR 40.0%
! TGTTACGGTCTATTGATGGT+TGG - chr3_1:37181606-37181625 Msa0356890:five_prime_UTR 40.0%
ATCCAAACCAGCCCATATTC+CGG - chr3_1:37178064-37178083 Msa0356890:intron 45.0%
ACCCATGTTTGCCGGAATAT+GGG + chr3_1:37178078-37178097 None:intergenic 45.0%
AACCCATGTTTGCCGGAATA+TGG + chr3_1:37178079-37178098 None:intergenic 45.0%
! TTCCGGCAAACATGGGTTTT+AGG - chr3_1:37178081-37178100 Msa0356890:CDS 45.0%
! TTTTAGGCCATGAAGCACAG+CGG - chr3_1:37178097-37178116 Msa0356890:CDS 45.0%
! GTCCGTGCTCCATAGATTTT+AGG - chr3_1:37178237-37178256 Msa0356890:intron 45.0%
CAGCATCACTTGGAAGTTTC+AGG + chr3_1:37178276-37178295 None:intergenic 45.0%
CTGAAACTTCCAAGTGATGC+TGG - chr3_1:37178274-37178293 Msa0356890:intron 45.0%
TTCATGTTGATCCCACCTGA+TGG - chr3_1:37178342-37178361 Msa0356890:intron 45.0%
! ATTTGCCACTTCCATCAGGT+GGG + chr3_1:37178356-37178375 None:intergenic 45.0%
! TATTTGCCACTTCCATCAGG+TGG + chr3_1:37178357-37178376 None:intergenic 45.0%
AGTTGCATTTGCATGGGTAG+AGG - chr3_1:37178501-37178520 Msa0356890:intron 45.0%
GGACAAATACTCCTCGGATT+AGG - chr3_1:37178704-37178723 Msa0356890:intron 45.0%
CTTCATAGCTATCTTCCTGC+TGG - chr3_1:37178858-37178877 Msa0356890:intron 45.0%
! AAAAGAAATGGGCTTCCAGC+AGG + chr3_1:37178876-37178895 None:intergenic 45.0%
! TGCTGGAAGCCCATTTCTTT+TGG - chr3_1:37178875-37178894 Msa0356890:intron 45.0%
! GCTGGAAGCCCATTTCTTTT+GGG - chr3_1:37178876-37178895 Msa0356890:intron 45.0%
TGCTTGTGAAGTCCATCTGA+TGG - chr3_1:37179054-37179073 Msa0356890:intron 45.0%
CGCACAATACACCAAATGGT+GGG + chr3_1:37179423-37179442 None:intergenic 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr3_1:37179459-37179478 Msa0356890:intron 45.0%
ATCATGTGACCGTAAGGTCA+CGG + chr3_1:37179493-37179512 None:intergenic 45.0%
ACACATCTGCCTATGGATGT+GGG - chr3_1:37179632-37179651 Msa0356890:intron 45.0%
TGTTCATAGCTGCCTAGTTC+TGG - chr3_1:37179884-37179903 Msa0356890:intron 45.0%
ATGTCAGACACATGCTCAAC+AGG + chr3_1:37180691-37180710 None:intergenic 45.0%
AGTATGTGGGTGCGTATTCA+TGG + chr3_1:37181034-37181053 None:intergenic 45.0%
TTGGGGTGAGAAAGCTTATC+TGG - chr3_1:37181334-37181353 Msa0356890:intron 45.0%
CCGAAGAGATTGTTGGAAGA+TGG - chr3_1:37181420-37181439 Msa0356890:intron 45.0%
! GGTCTATTGATGGTTGGTGT+TGG - chr3_1:37181612-37181631 Msa0356890:five_prime_UTR 45.0%
AGAAGCCCTGTTGTTGCAAA+AGG - chr3_1:37181662-37181681 Msa0356890:five_prime_UTR 45.0%
!! TATAAATTAAATTAGTAATT+TGG - chr3_1:37179586-37179605 Msa0356890:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+TGG - chr3_1:37181292-37181311 Msa0356890:intron 5.0%
GAAAACAGCTTAGACTCCGG+CGG + chr3_1:37177738-37177757 None:intergenic 50.0%
!! GCCGGAGTCTAAGCTGTTTT+CGG - chr3_1:37177737-37177756 Msa0356890:CDS 50.0%
GCCGAAAACAGCTTAGACTC+CGG + chr3_1:37177741-37177760 None:intergenic 50.0%
CGGCCTCCTTCTTCATCAAT+TGG - chr3_1:37177757-37177776 Msa0356890:intron 50.0%
ATGTTTGCCGGAATATGGGC+TGG + chr3_1:37178074-37178093 None:intergenic 50.0%
AGCCCATATTCCGGCAAACA+TGG - chr3_1:37178073-37178092 Msa0356890:intron 50.0%
GCCCATATTCCGGCAAACAT+GGG - chr3_1:37178074-37178093 Msa0356890:intron 50.0%
GGCCTAAAACCCATGTTTGC+CGG + chr3_1:37178086-37178105 None:intergenic 50.0%
ACCTAATCCGCTGTGCTTCA+TGG + chr3_1:37178107-37178126 None:intergenic 50.0%
ACCAGAACACGACATGGACA+CGG + chr3_1:37178217-37178236 None:intergenic 50.0%
CGCAATTTCCCAGCATCACT+TGG + chr3_1:37178286-37178305 None:intergenic 50.0%
TGATGCTGGGAAATTGCGCA+AGG - chr3_1:37178288-37178307 Msa0356890:intron 50.0%
GATGCTGGGAAATTGCGCAA+GGG - chr3_1:37178289-37178308 Msa0356890:intron 50.0%
TTGATCCCACCTGATGGAAG+TGG - chr3_1:37178348-37178367 Msa0356890:intron 50.0%
GCATTTGCATGGGTAGAGGT+TGG - chr3_1:37178505-37178524 Msa0356890:intron 50.0%
TTGGAGCTGCCATCATGTAC+CGG - chr3_1:37178524-37178543 Msa0356890:intron 50.0%
CTATGAAGCACGGACAGACA+AGG + chr3_1:37178846-37178865 None:intergenic 50.0%
TGAAGTCCATCTGATGGCAG+TGG - chr3_1:37179060-37179079 Msa0356890:intron 50.0%
TTGTTGCCACTGCCATCAGA+TGG + chr3_1:37179069-37179088 None:intergenic 50.0%
ACTGAAGCTCCTGCATATGC+AGG - chr3_1:37179383-37179402 Msa0356890:intron 50.0%
CTGAAGCTCCTGCATATGCA+GGG - chr3_1:37179384-37179403 Msa0356890:intron 50.0%
GCGCACAATACACCAAATGG+TGG + chr3_1:37179424-37179443 None:intergenic 50.0%
GCTGCGCACAATACACCAAA+TGG + chr3_1:37179427-37179446 None:intergenic 50.0%
GACTTGAACCCGTGACCTTA+CGG - chr3_1:37179481-37179500 Msa0356890:intron 50.0%
TCATGTGACCGTAAGGTCAC+GGG + chr3_1:37179492-37179511 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr3_1:37179515-37179534 Msa0356890:intron 50.0%
AGGAAAAACCTTGGCGCAAC+TGG + chr3_1:37179526-37179545 None:intergenic 50.0%
GACACATCTGCCTATGGATG+TGG - chr3_1:37179631-37179650 Msa0356890:intron 50.0%
ATCTGCCTATGGATGTGGGA+TGG - chr3_1:37179636-37179655 Msa0356890:intron 50.0%
CTCAACCATCCCACATCCAT+AGG + chr3_1:37179644-37179663 None:intergenic 50.0%
!! CTGCCTAGTTCTGGCAACAA+GGG - chr3_1:37179893-37179912 Msa0356890:intron 50.0%
ATGCCCTTGTTGCCAGAACT+AGG + chr3_1:37179899-37179918 None:intergenic 50.0%
CGGAGTTTCCCAACATCACT+TGG + chr3_1:37179951-37179970 None:intergenic 50.0%
TGATGTTGGGAAACTCCGCA+AGG - chr3_1:37179953-37179972 Msa0356890:intron 50.0%
GATGTTGGGAAACTCCGCAA+GGG - chr3_1:37179954-37179973 Msa0356890:intron 50.0%
TTCATGGTGATCCCTCCTGA+TGG - chr3_1:37180007-37180026 Msa0356890:intron 50.0%
TTCCATTGTGAAGCACGACC+AGG - chr3_1:37180326-37180345 Msa0356890:intron 50.0%
TCCATTGTGAAGCACGACCA+GGG - chr3_1:37180327-37180346 Msa0356890:intron 50.0%
GCCATCACTGCTTTATGGGT+TGG - chr3_1:37181193-37181212 Msa0356890:intron 50.0%
GCCAACCCATAAAGCAGTGA+TGG + chr3_1:37181197-37181216 None:intergenic 50.0%
AGGGCTTCTTGAGGACAAGT+AGG + chr3_1:37181651-37181670 None:intergenic 50.0%
TGCAACAACAGGGCTTCTTG+AGG + chr3_1:37181660-37181679 None:intergenic 50.0%
! AGGCGCGGTGGTTGATATGA+GGG + chr3_1:37177665-37177684 None:intergenic 55.0%
! AGACTGGCTGAGGCATGAGA+TGG + chr3_1:37177699-37177718 None:intergenic 55.0%
! AGGTTACGGTGGACTCAGAC+TGG + chr3_1:37177715-37177734 None:intergenic 55.0%
TTAGACTCCGGCGGAGGTTA+CGG + chr3_1:37177729-37177748 None:intergenic 55.0%
!! TGCCGGAATATGGGCTGGTT+TGG + chr3_1:37178069-37178088 None:intergenic 55.0%
! GCCATGAAGCACAGCGGATT+AGG - chr3_1:37178103-37178122 Msa0356890:CDS 55.0%
! CATAGGTGTCGTGTCGGAGT+CGG + chr3_1:37178144-37178163 None:intergenic 55.0%
TCCGTGTCCATGTCGTGTTC+TGG - chr3_1:37178213-37178232 Msa0356890:intron 55.0%
ACGGACACCAGAACACGACA+TGG + chr3_1:37178223-37178242 None:intergenic 55.0%
AAGGACACCGGACACAACAC+GGG + chr3_1:37178827-37178846 None:intergenic 55.0%
CAAGGACACCGGACACAACA+CGG + chr3_1:37178828-37178847 None:intergenic 55.0%
ATGCAGGAGCTTCAGTGCAC+CGG + chr3_1:37179379-37179398 None:intergenic 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr3_1:37179480-37179499 None:intergenic 55.0%
!! GCTGCCTAGTTCTGGCAACA+AGG - chr3_1:37179892-37179911 Msa0356890:intron 55.0%
TCCCTGGTCGTGCTTCACAA+TGG + chr3_1:37180331-37180350 None:intergenic 55.0%
! CGCGGTGGTTGATATGAGGG+CGG + chr3_1:37177662-37177681 None:intergenic 60.0%
! GAGGCGCGGTGGTTGATATG+AGG + chr3_1:37177666-37177685 None:intergenic 60.0%
CTGGCTGAGGCATGAGATGG+CGG + chr3_1:37177696-37177715 None:intergenic 60.0%
AACAGCTTAGACTCCGGCGG+AGG + chr3_1:37177735-37177754 None:intergenic 60.0%
TGGACACGGACATGCCGACA+CGG + chr3_1:37178203-37178222 None:intergenic 60.0%
! TCCTCGGATTAGGCGTGTCC+CGG - chr3_1:37178714-37178733 Msa0356890:intron 60.0%
TCGGTACGCGTGTCTGACAC+CGG + chr3_1:37178736-37178755 None:intergenic 60.0%
ACAACACGGGCACCAACACG+CGG + chr3_1:37178814-37178833 None:intergenic 60.0%
! GTTGGTGCCCGTGTTGTGTC+CGG - chr3_1:37178817-37178836 Msa0356890:intron 60.0%
GCACGGACAGACAAGGACAC+CGG + chr3_1:37178839-37178858 None:intergenic 60.0%
TGCAGGAGCTTCAGTGCACC+GGG + chr3_1:37179378-37179397 None:intergenic 60.0%
GCTCCTGCATATGCAGGGTC+CGG - chr3_1:37179389-37179408 Msa0356890:intron 60.0%
CTCCTGCATATGCAGGGTCC+GGG - chr3_1:37179390-37179409 Msa0356890:intron 60.0%
TTCCCGGACCCTGCATATGC+AGG + chr3_1:37179395-37179414 None:intergenic 60.0%
TGCATATGCAGGGTCCGGGA+AGG - chr3_1:37179394-37179413 Msa0356890:intron 60.0%
GCATATGCAGGGTCCGGGAA+GGG - chr3_1:37179395-37179414 Msa0356890:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG - chr3_1:37179396-37179415 Msa0356890:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr3_1:37179411-37179430 None:intergenic 60.0%
! ATGAGATGGCGGCGACGGTG+AGG + chr3_1:37177685-37177704 None:intergenic 65.0%
! GAGGCATGAGATGGCGGCGA+CGG + chr3_1:37177690-37177709 None:intergenic 65.0%
! CGGTGGACTCAGACTGGCTG+AGG + chr3_1:37177709-37177728 None:intergenic 65.0%
GAGTCCACCGTAACCTCCGC+CGG - chr3_1:37177719-37177738 Msa0356890:CDS 65.0%
ACCGGGACACGCCTAATCCG+AGG + chr3_1:37178718-37178737 None:intergenic 65.0%
CGGTACGCGTGTCTGACACC+GGG + chr3_1:37178735-37178754 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG - chr3_1:37179409-37179428 Msa0356890:intron 65.0%
GACTCCGGCGGAGGTTACGG+TGG + chr3_1:37177726-37177745 None:intergenic 70.0%
ATGGCGGCGACGGTGAGGCG+CGG + chr3_1:37177680-37177699 None:intergenic 75.0%
! GCGGCGACGGTGAGGCGCGG+TGG + chr3_1:37177677-37177696 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 37177631 37181707 37177631 ID=Msa0356890;Name=Msa0356890
chr3_1 mRNA 37177631 37181707 37177631 ID=Msa0356890-mRNA-1;Parent=Msa0356890;Name=Msa0356890-mRNA-1;_AED=0.02;_eAED=0.02;_QI=156|1|0.66|1|0.5|0.33|3|0|77
chr3_1 exon 37177631 37177762 37177631 ID=Msa0356890-mRNA-1:exon:6735;Parent=Msa0356890-mRNA-1
chr3_1 exon 37178080 37178189 37178080 ID=Msa0356890-mRNA-1:exon:6734;Parent=Msa0356890-mRNA-1
chr3_1 exon 37181560 37181707 37181560 ID=Msa0356890-mRNA-1:exon:6733;Parent=Msa0356890-mRNA-1
chr3_1 five_prime_UTR 37181560 37181707 37181560 ID=Msa0356890-mRNA-1:five_prime_utr;Parent=Msa0356890-mRNA-1
chr3_1 five_prime_UTR 37178182 37178189 37178182 ID=Msa0356890-mRNA-1:five_prime_utr;Parent=Msa0356890-mRNA-1
chr3_1 CDS 37178080 37178181 37178080 ID=Msa0356890-mRNA-1:cds;Parent=Msa0356890-mRNA-1
chr3_1 CDS 37177631 37177762 37177631 ID=Msa0356890-mRNA-1:cds;Parent=Msa0356890-mRNA-1
Gene Sequence

>Msa0356890

ATGAAGCATATTGTAAAGATATTGTCACTGGTAATTGCCATCACTGCTTTATGGGTTGGCCTTCTACAAACTTCTATCATTCCTCAAAGTCATACTTGGTTGCTACCAATCTATTTTGTCGTGTCTTTAGGATGTTACGGTCTATTGATGGTTGGTGTTGGTCTGATGAATTTTCCTACTTGTCCTCAAGAAGCCCTGTTGTTGCAAAAGGTATGTTCCACCTCTGAGCATTAG

Protein sequence

>Msa0356890

MKHIVKILSLVIAITALWVGLLQTSIIPQSHTWLLPIYFVVSLGCYGLLMVGVGLMNFPTCPQEALLLQKVCSTSEH*