AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0004920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0004920 MtrunA17_Chr1g0153141 82.558 172 13 4 401 555 118 289 1.51e-83 264
Msa0004920 MtrunA17_Chr1g0151261 40.278 216 102 9 396 588 126 337 5.77e-28 115
Msa0004920 MtrunA17_Chr7g0233401 56.250 80 35 0 256 335 20 99 5.96e-22 92.0
Msa0004920 MtrunA17_Chr1g0156631 34.559 136 61 2 64 172 40 174 1.93e-15 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0004920 AT5G52010.1 37.870 169 81 7 400 547 150 315 9.43e-21 95.1

Find 202 sgRNAs with CRISPR-Local

Find 635 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTATTGGGGTAGGGATTT+GGG 0.147483 1_1:+7373414 Msa0004920:CDS
AACAACATCAACAGCCTTTA+TGG 0.151097 1_1:+7372978 Msa0004920:CDS
GGATTATTGGGGTAGGGATT+TGG 0.178313 1_1:+7373413 Msa0004920:CDS
TTGTTGTTGTTGGGGATTAT+TGG 0.205625 1_1:+7373400 Msa0004920:CDS
TTCTGTACTGCTGAAGTTTC+CGG 0.209430 1_1:+7374020 Msa0004920:three_prime_UTR
ATGATGTTAACCGGATAATT+TGG 0.215343 1_1:+7376732 Msa0004920:three_prime_UTR
ATGCTGATTTGTGGCTTCTT+TGG 0.222848 1_1:+7373442 Msa0004920:CDS
TCAATAGGACACACTAAAAT+TGG 0.239885 1_1:-7368807 None:intergenic
AGAAAATGTTGTAGAAAGTT+AGG 0.240520 1_1:+7373361 Msa0004920:intron
TGGGGTTGATTCATTGGTTT+TGG 0.248478 1_1:+7373317 Msa0004920:CDS
GCTGGATTTGGAATGGCTTC+GGG 0.261557 1_1:+7373201 Msa0004920:CDS
TGTTGTTGTTGGGGATTATT+GGG 0.261710 1_1:+7373401 Msa0004920:CDS
TATTAAATTGAAACGTTCTA+AGG 0.265804 1_1:+7373120 Msa0004920:CDS
ACACGGCAGAGAAAGGAATT+AGG 0.272033 1_1:-7373010 None:intergenic
CAGTTCCAACGACAAGAAAA+AGG 0.278063 1_1:-7372953 None:intergenic
GAGTGGTGGGGTTGATTCAT+TGG 0.283377 1_1:+7373311 Msa0004920:CDS
CGAAGAAATCACTATTGTTA+TGG 0.284732 1_1:+7373688 Msa0004920:three_prime_UTR
GCTCCACTTAAGGCTGGATT+TGG 0.286717 1_1:+7373189 Msa0004920:CDS
AGGAACAGTGGAAGAGGATT+TGG 0.291982 1_1:+7373503 Msa0004920:CDS
TTCCAACGGCAAGAAGAAAA+AGG 0.297160 1_1:+7370224 Msa0004920:CDS
GGCTGGATTTGGAATGGCTT+CGG 0.304498 1_1:+7373200 Msa0004920:CDS
AGAATAATTCTCATCTCATT+AGG 0.304943 1_1:-7370252 None:intergenic
ACACAACAAATCTAGCAAAT+TGG 0.306026 1_1:+7371123 Msa0004920:CDS
AGCTCAATGGCGCTATAAAC+AGG 0.307628 1_1:-7376524 None:intergenic
GTGATCTCTTTGAGCTTTAC+CGG 0.311285 1_1:-7376829 None:intergenic
ATTGAAGATTATTATTTCAT+AGG 0.322017 1_1:+7376624 Msa0004920:three_prime_UTR
TTGCTACAAGCATTTGTCTT+TGG 0.323587 1_1:-7371313 None:intergenic
AAACGAAGCTAGACTGAATT+GGG 0.325669 1_1:+7373832 Msa0004920:three_prime_UTR
TAAACGAAGCTAGACTGAAT+TGG 0.332936 1_1:+7373831 Msa0004920:three_prime_UTR
GAAGAAATCACTATTGTTAT+GGG 0.334101 1_1:+7373689 Msa0004920:three_prime_UTR
CTTTGGATTCTTGTTGTGAA+TGG 0.342263 1_1:+7373459 Msa0004920:CDS
CAGAGAAAGGAATTAGGGTT+AGG 0.348098 1_1:-7373004 None:intergenic
GAGAGAACTTGAGGCGAGAT+TGG 0.349966 1_1:+7369016 Msa0004920:CDS
ATTATTGGGGTAGGGATTTG+GGG 0.351048 1_1:+7373415 Msa0004920:CDS
TGTTAGAACACTTCCAAGAT+TGG 0.354033 1_1:+7368767 Msa0004920:CDS
TGAAGATATGGGTGATAATC+AGG 0.355872 1_1:+7371196 Msa0004920:CDS
GTGTCAGTTCCCAAGGGATT+TGG 0.362335 1_1:-7371104 None:intergenic
AGAGGATTTGGATGATGAAT+TGG 0.363809 1_1:+7373515 Msa0004920:CDS
GCCTGCGCAAGATGAAGATA+TGG 0.364425 1_1:+7371184 Msa0004920:CDS
TTATAAGAAATTGTTTGCTT+TGG 0.364950 1_1:+7369319 Msa0004920:CDS
TCCCGATTCACGTGCTTTAG+AGG 0.367323 1_1:-7372836 None:intergenic
AAAGTAGAAATTGTTGTTGT+TGG 0.377692 1_1:+7373390 Msa0004920:CDS
TGCCTCTAAAGCACGTGAAC+CGG 0.378423 1_1:-7370343 None:intergenic
GATTGTAAGTTGATGGATCT+TGG 0.388820 1_1:+7368624 None:intergenic
TCCCGGTTCACGTGCTTTAG+AGG 0.396139 1_1:+7370341 Msa0004920:CDS
CTCAAAATTACCAAATTATC+CGG 0.400802 1_1:-7376742 None:intergenic
AAATGATTATATTGTTAAGT+TGG 0.403372 1_1:+7369394 Msa0004920:CDS
TTGGAATGGCTTCGGGGTTG+CGG 0.403725 1_1:+7373208 Msa0004920:CDS
TCATCTTGCATTCCTCCTAT+AGG 0.406756 1_1:-7371230 None:intergenic
CTGCAATAATGCTCCACTTA+AGG 0.407663 1_1:+7373179 Msa0004920:CDS
AATGATTATATTGTTAAGTT+GGG 0.411499 1_1:+7369395 Msa0004920:CDS
TGCCTCTAAAGCACGTGAAT+CGG 0.412355 1_1:+7372834 Msa0004920:CDS
ATTGTAAGTTGATGGATCTT+GGG 0.414903 1_1:+7368625 None:intergenic
ACAGAGGAATTTCACTGAAT+AGG 0.418923 1_1:-7372861 None:intergenic
TTGTTATGGGATGCGCTATA+TGG 0.419334 1_1:+7373702 Msa0004920:three_prime_UTR
GTGAAGATTGTGACGGTTCA+TGG 0.424458 1_1:+7373246 Msa0004920:CDS
AAGTAGAAATTGTTGTTGTT+GGG 0.425403 1_1:+7373391 Msa0004920:CDS
TCACGTGCTTTAGAGGCATT+AGG 0.428847 1_1:+7370348 Msa0004920:CDS
TCACGTGCTTTAGAGGCATT+AGG 0.430867 1_1:-7372829 None:intergenic
GCCTCTAAAGCACGTGAATC+GGG 0.432430 1_1:+7372835 Msa0004920:CDS
TGGAGAATGGTCAATGTGTT+TGG 0.433091 1_1:+7369339 Msa0004920:CDS
AAATTGTTTGCTTTGGAGAA+TGG 0.437293 1_1:+7369326 Msa0004920:CDS
CTGTTGGTTCAAAATTTACT+TGG 0.437545 1_1:+7368649 Msa0004920:CDS
GCCAACGTGCACGAGACCTT+TGG 0.440234 1_1:-7369154 None:intergenic
CACGGCAGAGAAAGGAATTA+GGG 0.442544 1_1:-7373009 None:intergenic
ATTTCATTCGAAGGAATCAT+AGG 0.443246 1_1:+7373146 Msa0004920:CDS
GAAAATGTTGTAGAAAGTTA+GGG 0.445508 1_1:+7373362 Msa0004920:intron
GAATGCAAGATGACGATGAT+TGG 0.446928 1_1:+7371240 Msa0004920:CDS
TTGTTGGGGATTATTGGGGT+AGG 0.453010 1_1:+7373406 Msa0004920:CDS
ACAGTGGAATTTCACTGTAT+AGG 0.455928 1_1:+7370316 Msa0004920:CDS
ATATAATCATTTGCCAACTC+AGG 0.456175 1_1:-7369383 None:intergenic
ATTGGCAGATAGGCGATTAG+AGG 0.456696 1_1:+7376340 Msa0004920:intron
GAGCATTGAGTAATGATTTG+TGG 0.457853 1_1:+7368721 Msa0004920:CDS
TGGGGAGGAATGCTGATTTG+TGG 0.458714 1_1:+7373433 Msa0004920:CDS
ATAACATGCAAAGCTTCAAT+AGG 0.460398 1_1:-7368822 None:intergenic
GATGGGAGGAACAGTGGAAG+AGG 0.460550 1_1:+7373497 Msa0004920:CDS
TGGTTCAAAATTTACTTGGC+GGG 0.463912 1_1:+7368653 Msa0004920:CDS
AGAGAACTTGAGGCGAGATT+GGG 0.465763 1_1:+7369017 Msa0004920:CDS
AGAATGGATTATCGAAATTG+AGG 0.466477 1_1:+7373863 Msa0004920:three_prime_UTR
CAATGCGACATGATGTTAAC+CGG 0.468038 1_1:+7376723 Msa0004920:three_prime_UTR
GACAATGTTATGGCACTACT+TGG 0.468181 1_1:-7372799 None:intergenic
GATGATGGGTATATAATAGA+TGG 0.469192 1_1:+7373561 Msa0004920:CDS
TTAGGGTTAGGGTTCCATAA+AGG 0.469727 1_1:-7372992 None:intergenic
CTGAAGTTTCCGGCTTATGA+TGG 0.470810 1_1:+7374030 Msa0004920:three_prime_UTR
GCGTGGAACGTTGGAGGCTA+AGG 0.472074 1_1:+7371262 Msa0004920:CDS
TTGATGGATCTTGGGGCTGT+TGG 0.474819 1_1:+7368633 None:intergenic
GTTGTGTAGCGGTAACTTCA+AGG 0.475420 1_1:+7373940 Msa0004920:three_prime_UTR
TGTTGGGGATTATTGGGGTA+GGG 0.476786 1_1:+7373407 Msa0004920:CDS
TGGAAATGTTGAATATTTGA+TGG 0.476818 1_1:+7373479 Msa0004920:CDS
TGGCGGGGTCCTCTGTATCA+TGG 0.477046 1_1:+7368669 Msa0004920:CDS
TTGGTTCAAAATTTACTTGG+CGG 0.477244 1_1:+7368652 Msa0004920:CDS
CAGGAGGAACAACAACCTAT+AGG 0.482504 1_1:+7371215 Msa0004920:CDS
GATGGAGAACAAGATGAAGA+TGG 0.483387 1_1:+7373579 Msa0004920:CDS
AGTGGGAGATGAGGAGTGGT+GGG 0.484755 1_1:+7373298 Msa0004920:CDS
GGAAAGGCTGTTGATGTTGT+TGG 0.485710 1_1:+7370198 Msa0004920:CDS
ATAAAGGCTGTTGATGTTGT+TGG 0.486970 1_1:-7372976 None:intergenic
AGTTGAGTTATGTTGAATTG+AGG 0.487258 1_1:+7373889 Msa0004920:three_prime_UTR
ATTCCAAATCCAGCCTTAAG+TGG 0.497244 1_1:-7373192 None:intergenic
AAGTGGGAGATGAGGAGTGG+TGG 0.497507 1_1:+7373297 Msa0004920:CDS
AGTGTTCTAACAAGACCATC+AGG 0.498207 1_1:-7368756 None:intergenic
AGCAACACCGATGAACATAA+TGG 0.502343 1_1:+7376769 Msa0004920:three_prime_UTR
AGAGAAAGGAATTAGGGTTA+GGG 0.502994 1_1:-7373003 None:intergenic
ATTTGTTGTGTCAGTTCCCA+AGG 0.506460 1_1:-7371111 None:intergenic
AGGTATAAAAGACAATGTTA+TGG 0.509953 1_1:-7372809 None:intergenic
CTAAGGTTAATTTCATTCGA+AGG 0.511091 1_1:+7373137 Msa0004920:CDS
TGCTGATTCGTCGTTGAAGT+GGG 0.511671 1_1:+7373281 Msa0004920:CDS
GCCTCTAAAGCACGTGAACC+GGG 0.511788 1_1:-7370342 None:intergenic
TATGATGATTATGATGATGA+TGG 0.514858 1_1:+7373546 Msa0004920:CDS
ACCACAGACACGGCAGAGAA+AGG 0.521644 1_1:-7373017 None:intergenic
TCCTTTCTCTGCCGTGTCTG+TGG 0.525164 1_1:+7373016 Msa0004920:CDS
TCTTGCGCAGGCTGCTCTTG+AGG 0.528212 1_1:-7371173 None:intergenic
ACTTAAGGCTGGATTTGGAA+TGG 0.529534 1_1:+7373194 Msa0004920:CDS
ATGGAGAACAAGATGAAGAT+GGG 0.532185 1_1:+7373580 Msa0004920:CDS
GTTGTTGTTGGGGATTATTG+GGG 0.532767 1_1:+7373402 Msa0004920:CDS
AAGTAGACTCGAGCAAGAAT+CGG 0.534729 1_1:-7376429 None:intergenic
ATTGGGGTAGGGATTTGGGG+AGG 0.535150 1_1:+7373418 Msa0004920:CDS
GGTTCAAAATTTACTTGGCG+GGG 0.535264 1_1:+7368654 Msa0004920:CDS
CCCATATCTTCATCTTGCGC+AGG 0.536558 1_1:-7371185 None:intergenic
ATTTCACTGTATAGGTATCC+CGG 0.539186 1_1:+7370324 Msa0004920:CDS
CCTGCGCAAGATGAAGATAT+GGG 0.541191 1_1:+7371185 Msa0004920:CDS
CTGCTGATTCGTCGTTGAAG+TGG 0.542933 1_1:+7373280 Msa0004920:CDS
AGAAGTAACCTTCCCTGAGT+TGG 0.543616 1_1:+7369370 Msa0004920:CDS
GCTTCGGGGTTGCGGCGAGG+TGG 0.549029 1_1:+7373216 Msa0004920:CDS
TGGTCTGAGAAATCCAATCT+TGG 0.550686 1_1:-7368780 None:intergenic
TTGTGTAGCGGTAACTTCAA+GGG 0.551607 1_1:+7373941 Msa0004920:three_prime_UTR
GGTTTCATTGTGGTTATCTG+AGG 0.554704 1_1:+7373962 Msa0004920:three_prime_UTR
CGGCAATCCATTATGTTCAT+CGG 0.555524 1_1:-7376776 None:intergenic
ACATGATTTCACAAGCTCAA+TGG 0.556304 1_1:-7376537 None:intergenic
TAGAGATGCAGCTGGACAAT+GGG 0.561288 1_1:+7369256 Msa0004920:intron
CGTCGTTGAAGTGGGAGATG+AGG 0.561588 1_1:+7373289 Msa0004920:CDS
GGCTGCTCTTGAGGTACATG+TGG 0.562387 1_1:-7371164 None:intergenic
CTGGATTTGGAATGGCTTCG+GGG 0.563030 1_1:+7373202 Msa0004920:CDS
AGTAGAAATTGTTGTTGTTG+GGG 0.564552 1_1:+7373392 Msa0004920:CDS
TGGCGTGTGGAGTTTCCTGA+TGG 0.566722 1_1:+7368741 Msa0004920:CDS
TTGAACGAGGTATCAAGAGC+TGG 0.567734 1_1:+7368958 Msa0004920:CDS
GGAAATGTTGAATATTTGAT+GGG 0.569673 1_1:+7373480 Msa0004920:CDS
ATACAGCGGCGGATACATCT+TGG 0.570335 1_1:+7369044 Msa0004920:CDS
GATTGTGACGGTTCATGGTA+AGG 0.571325 1_1:+7373251 Msa0004920:CDS
AATAATGCTCCACTTAAGGC+TGG 0.571589 1_1:+7373183 Msa0004920:CDS
TTTCAGTATTGTCAAAATAG+CGG 0.574669 1_1:+7373630 Msa0004920:three_prime_UTR
ATCATTTGCCAACTCAGGGA+AGG 0.574996 1_1:-7369378 None:intergenic
TGATTGGCGTGGAACGTTGG+AGG 0.575574 1_1:+7371256 Msa0004920:CDS
ATGGCACTACTTGGTAACAT+AGG 0.579546 1_1:-7372790 None:intergenic
TATAATCATTTGCCAACTCA+GGG 0.580205 1_1:-7369382 None:intergenic
ATATTTGATGGGAGGAACAG+TGG 0.582987 1_1:+7373491 Msa0004920:CDS
TTTGTTGTGTCAGTTCCCAA+GGG 0.584927 1_1:-7371110 None:intergenic
GATGTTGTTGGCAGTTCCAA+CGG 0.586138 1_1:+7370210 Msa0004920:CDS
TGCTGATCACGTGAAACTCA+TGG 0.588244 1_1:+7369286 Msa0004920:CDS
GTCTACTTAATATAGTATGT+AGG 0.589902 1_1:+7376444 Msa0004920:three_prime_UTR
GAACTTGAGGCGAGATTGGG+TGG 0.591202 1_1:+7369020 Msa0004920:CDS
CGATGATTGGCGTGGAACGT+TGG 0.592476 1_1:+7371253 Msa0004920:CDS
TAGGACACACTAAAATTGGA+TGG 0.593933 1_1:-7368803 None:intergenic
ATGGCTTCGGGGTTGCGGCG+AGG 0.597398 1_1:+7373213 Msa0004920:CDS
CGTGCACGTTGGCTTACAGA+TGG 0.598462 1_1:+7369164 Msa0004920:CDS
AAGAGTTGATGTGGTTCCAA+AGG 0.599981 1_1:+7369138 Msa0004920:CDS
TTGGCAGATAGGCGATTAGA+GGG 0.601372 1_1:+7376341 Msa0004920:intron
ACTTCACATCTGAAAAGAAG+AGG 0.601375 1_1:+7370277 Msa0004920:CDS
AGATGCAGCTGGACAATGGG+TGG 0.601832 1_1:+7369259 Msa0004920:intron
CAAAACATACCATCATAAGC+CGG 0.603774 1_1:-7374039 None:intergenic
GGGGTCCTCTGTATCATGGA+GGG 0.604069 1_1:+7368673 Msa0004920:CDS
GAAACTTCAGCAGTACAGAA+TGG 0.604469 1_1:-7374017 None:intergenic
CGGTTAACATCATGTCGCAT+TGG 0.606219 1_1:-7376722 None:intergenic
ATGATGATTATGATGATGAT+GGG 0.607293 1_1:+7373547 Msa0004920:CDS
TTGATTATAATGTTGTGTAG+CGG 0.608015 1_1:+7373929 Msa0004920:three_prime_UTR
TAAGGTTGACAAGATTAATG+AGG 0.608406 1_1:+7371280 Msa0004920:CDS
GCTCAATGGCGCTATAAACA+GGG 0.612239 1_1:-7376523 None:intergenic
TAACTTCAAGGGTTTCATTG+TGG 0.617421 1_1:+7373952 Msa0004920:three_prime_UTR
TTAGAGATGCAGCTGGACAA+TGG 0.620149 1_1:+7369255 Msa0004920:intron
AATGTTGTAGAAAGTTAGGG+AGG 0.621987 1_1:+7373365 Msa0004920:intron
AACGAAGCTAGACTGAATTG+GGG 0.626874 1_1:+7373833 Msa0004920:three_prime_UTR
AGCTAAGTAGATCTAGACAA+TGG 0.627099 1_1:+7376492 Msa0004920:three_prime_UTR
TGCATTCGTAACCACAGACA+CGG 0.628222 1_1:-7373027 None:intergenic
TGCAGCTGGACAATGGGTGG+AGG 0.628904 1_1:+7369262 Msa0004920:intron
AATGTTGAATATTTGATGGG+AGG 0.632949 1_1:+7373483 Msa0004920:CDS
TCCAAAGGTCTCGTGCACGT+TGG 0.637641 1_1:+7369153 Msa0004920:CDS
GAGGAACAACAACCTATAGG+AGG 0.638621 1_1:+7371218 Msa0004920:CDS
GTATTTCCAATTGTGTATCG+CGG 0.639993 1_1:-7373803 None:intergenic
CGGGGTCCTCTGTATCATGG+AGG 0.640269 1_1:+7368672 Msa0004920:CDS
TAAAGCTCAAAGAGATCACA+AGG 0.640822 1_1:+7376833 Msa0004920:three_prime_UTR
GACGGTTCATGGTAAGGTGA+AGG 0.641007 1_1:+7373257 Msa0004920:CDS
GTGGGAGATGAGGAGTGGTG+GGG 0.643449 1_1:+7373299 Msa0004920:CDS
GAGTAATGATTTGTGGCGTG+TGG 0.646865 1_1:+7368728 Msa0004920:CDS
TTGTAAGTTGATGGATCTTG+GGG 0.649750 1_1:+7368626 None:intergenic
GAAGCTAGACTGAATTGGGG+GGG 0.650361 1_1:+7373836 Msa0004920:three_prime_UTR
ATAGGCGATTAGAGGGCATG+TGG 0.657982 1_1:+7376348 Msa0004920:three_prime_UTR
TGCATAATCTTCCATCGACT+AGG 0.659164 1_1:-7376378 None:intergenic
CATCTTGGCAGTCATTCGAG+AGG 0.661396 1_1:+7369059 Msa0004920:CDS
CGAAGCTAGACTGAATTGGG+GGG 0.663694 1_1:+7373835 Msa0004920:three_prime_UTR
ACGAAGCTAGACTGAATTGG+GGG 0.667187 1_1:+7373834 Msa0004920:three_prime_UTR
TTGAAGTGGGAGATGAGGAG+TGG 0.667462 1_1:+7373294 Msa0004920:CDS
CAAGATGACGATGATTGGCG+TGG 0.680070 1_1:+7371245 Msa0004920:CDS
CTTGAAGTGAATGTTGACAT+CGG 0.681461 1_1:-7373059 None:intergenic
TCCATGTTAGAAAAGCTCAC+CGG 0.683304 1_1:+7376810 Msa0004920:three_prime_UTR
GACACACTAAAATTGGATGG+TGG 0.693818 1_1:-7368800 None:intergenic
AGATATGGGTGATAATCAGG+AGG 0.694136 1_1:+7371199 Msa0004920:CDS
TGTTGCCCTCCATGATACAG+AGG 0.694440 1_1:-7368678 None:intergenic
AGTGCTATTACAGCTGAACG+AGG 0.699281 1_1:+7376401 Msa0004920:three_prime_UTR
ACATCACATCTGAAAAGACG+AGG 0.703168 1_1:-7372900 None:intergenic
AATTTGAAGAGTGTTGAACG+AGG 0.705402 1_1:+7368945 Msa0004920:intron
CGAGATTGGGTGGTATACAG+CGG 0.720893 1_1:+7369030 Msa0004920:CDS
GTGCTATTACAGCTGAACGA+GGG 0.725386 1_1:+7376402 Msa0004920:three_prime_UTR
GATTGGGTGGTATACAGCGG+CGG 0.731929 1_1:+7369033 Msa0004920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTATTTTAATTTTAG+AGG + chr1_1:7369785-7369804 Msa0004920:intron 10.0%
!!! TATTTTGGATTTTTTTTATT+TGG + chr1_1:7369810-7369829 Msa0004920:intron 10.0%
!! CAAATAAAGAAAAAAAATAT+AGG - chr1_1:7375031-7375050 None:intergenic 10.0%
!!! AACTATTTTTTTTTTTGAAA+CGG - chr1_1:7375253-7375272 None:intergenic 10.0%
!! TTTGAAAAAAAAAAATTAGA+AGG + chr1_1:7376161-7376180 Msa0004920:intron 10.0%
!!! ATTGAACATTATTTTGAAAA+AGG + chr1_1:7369115-7369134 Msa0004920:CDS 15.0%
!! AAATGATTATATTGTTAAGT+TGG + chr1_1:7369394-7369413 Msa0004920:CDS 15.0%
!! AATGATTATATTGTTAAGTT+GGG + chr1_1:7369395-7369414 Msa0004920:CDS 15.0%
!! TTATATAAATATGTATATGC+AGG - chr1_1:7369571-7369590 None:intergenic 15.0%
!!! TTAATTTTAGAGGAATATTT+TGG + chr1_1:7369795-7369814 Msa0004920:intron 15.0%
!!! TTGTTTTATTTCAATTGTAA+TGG + chr1_1:7369888-7369907 Msa0004920:intron 15.0%
!!! ATTTAAGATTGATTTATAAC+TGG + chr1_1:7370119-7370138 Msa0004920:intron 15.0%
!! AATATCAACAATTGAAAATT+CGG - chr1_1:7372121-7372140 Msa0004930:CDS 15.0%
!! ACAAAACATTAAAGTAAAAT+AGG - chr1_1:7371396-7371415 None:intergenic 15.0%
!!! TTTACTTTAATGTTTTGTTT+TGG + chr1_1:7371398-7371417 Msa0004920:intron 15.0%
!! AATTACAACATAATTAAACA+TGG + chr1_1:7371696-7371715 Msa0004920:intron 15.0%
!! TCAATAGTAATAATATTGTT+AGG + chr1_1:7374320-7374339 Msa0004920:intron 15.0%
!!! ATTTTTCTATATATGCATTT+CGG + chr1_1:7374579-7374598 Msa0004920:intron 15.0%
!!! TCTGAATCATTTTAAAAATT+GGG + chr1_1:7374922-7374941 Msa0004920:intron 15.0%
!!! TTAATGAATTTTGATTCATT+TGG + chr1_1:7376568-7376587 Msa0004920:three_prime_UTR 15.0%
!! ATTGAAGATTATTATTTCAT+AGG + chr1_1:7376624-7376643 Msa0004920:three_prime_UTR 15.0%
!! TTATAAGAAATTGTTTGCTT+TGG + chr1_1:7369319-7369338 Msa0004920:CDS 20.0%
!! NNNNNNNNNNCTATACTACC+CGG + chr1_1:7369537-7369556 Msa0004920:intron 20.0%
!! GCTAAATCTAAAAACTAATA+CGG + chr1_1:7369657-7369676 Msa0004920:intron 20.0%
!!! GAGTTGCTTTAAAAAAAAAT+TGG + chr1_1:7369861-7369880 Msa0004920:intron 20.0%
!!! GTCTTTTTATAATTAAAGTG+CGG + chr1_1:7369920-7369939 Msa0004920:intron 20.0%
!!! TCTTTTTATAATTAAAGTGC+GGG + chr1_1:7369921-7369940 Msa0004920:intron 20.0%
!!! TTTTTTTTTTTTTTTGCGAC+AGG + chr1_1:7370146-7370165 Msa0004920:intron 20.0%
!!! AGTTTTAGTTACAAATAAGT+GGG + chr1_1:7370661-7370680 Msa0004920:intron 20.0%
!!! TTTTTGTAAACAGATTCATA+TGG + chr1_1:7371013-7371032 Msa0004920:intron 20.0%
!!! TTTACTTTAATGCTTTGTTT+TGG - chr1_1:7371785-7371804 None:intergenic 20.0%
!!! TTTTTGTAAACAGATTCATA+TGG - chr1_1:7371013-7371032 None:intergenic 20.0%
!! TTTACAAAAATCAAGATCAA+TGG + chr1_1:7372180-7372199 Msa0004920:intron 20.0%
!! AATCATAAATTCAAGTGTAA+AGG + chr1_1:7372726-7372745 Msa0004920:intron 20.0%
!! TATTAAATTGAAACGTTCTA+AGG + chr1_1:7373120-7373139 Msa0004920:CDS 20.0%
!! ATCTATTTATCCATTAATCA+TGG - chr1_1:7374149-7374168 None:intergenic 20.0%
!!! TTATATGTCAATTTTGTTGT+TGG + chr1_1:7374204-7374223 Msa0004920:intron 20.0%
!! ATATGATTCTTTAGTTATGA+AGG + chr1_1:7374294-7374313 Msa0004920:intron 20.0%
!!! TTTTTCTATATATGCATTTC+GGG + chr1_1:7374580-7374599 Msa0004920:intron 20.0%
!!! TTTTCTTCATATATGCTTTT+CGG + chr1_1:7374628-7374647 Msa0004920:intron 20.0%
!!! GTCTGAATCATTTTAAAAAT+TGG + chr1_1:7374921-7374940 Msa0004920:intron 20.0%
!!! CTGAATCATTTTAAAAATTG+GGG + chr1_1:7374923-7374942 Msa0004920:intron 20.0%
!!! TGAATCATTTTAAAAATTGG+GGG + chr1_1:7374924-7374943 Msa0004920:intron 20.0%
!!! TAAATTGTAGCTTTAGAAAT+AGG + chr1_1:7374954-7374973 Msa0004920:intron 20.0%
!!! AAATTGTAGCTTTAGAAATA+GGG + chr1_1:7374955-7374974 Msa0004920:intron 20.0%
!!! TATAGGCTTAAATGTTATTT+TGG - chr1_1:7375014-7375033 None:intergenic 20.0%
!! AATATATGATAAGGCATATT+TGG + chr1_1:7375320-7375339 Msa0004920:intron 20.0%
!! AATACCAAGATAAAAAGATA+AGG - chr1_1:7375495-7375514 None:intergenic 20.0%
!!! TTATCTTTTTATCTTGGTAT+TGG + chr1_1:7375494-7375513 Msa0004920:intron 20.0%
!! TAATTGTAAATGAAAGTTGT+GGG - chr1_1:7375616-7375635 None:intergenic 20.0%
!!! ATCTCAATGTCATTTTATAT+GGG - chr1_1:7375722-7375741 None:intergenic 20.0%
!!! TATCTCAATGTCATTTTATA+TGG - chr1_1:7375723-7375742 None:intergenic 20.0%
!! TATAAAATGACATTGAGATA+TGG + chr1_1:7375723-7375742 Msa0004920:intron 20.0%
!! ATAAAATGACATTGAGATAT+GGG + chr1_1:7375724-7375743 Msa0004920:intron 20.0%
!! TATAAAGCAGTTAATCATAA+AGG - chr1_1:7376136-7376155 None:intergenic 20.0%
!!! ATTATCCTATTTTCTGAAAT+TGG + chr1_1:7376322-7376341 Msa0004920:intron 20.0%
!!! ATTTTGACAAATTGCTTCTA+AGG + chr1_1:7370176-7370195 Msa0004920:intron 25.0%
!! TTTTGACAAATTGCTTCTAA+GGG + chr1_1:7370177-7370196 Msa0004920:intron 25.0%
! AGAATAATTCTCATCTCATT+AGG - chr1_1:7370255-7370274 None:intergenic 25.0%
! ACTCATAAATTCAAGTGTAA+AGG - chr1_1:7370454-7370473 None:intergenic 25.0%
!!! GAGTTTTAGTTACAAATAAG+TGG + chr1_1:7370660-7370679 Msa0004920:intron 25.0%
!! TGGCAGATTTAGAATTATAA+TGG - chr1_1:7370692-7370711 None:intergenic 25.0%
!! TGATAAGCTATTCATTTTGT+GGG + chr1_1:7370806-7370825 Msa0004920:intron 25.0%
! TAAACAGATTCATATGGTTA+GGG + chr1_1:7371019-7371038 Msa0004920:intron 25.0%
!! AAAAGTGCATAACATATTCT+AGG - chr1_1:7371651-7371670 None:intergenic 25.0%
! TACAAGTTCTTCAACTTAAT+AGG - chr1_1:7371576-7371595 None:intergenic 25.0%
!! AAAAGTGCATAACATATTCT+AGG + chr1_1:7371651-7371670 Msa0004920:intron 25.0%
! TATGTGTAACATGATTATTC+TGG + chr1_1:7371806-7371825 Msa0004920:intron 25.0%
! TAAACAGATTCATATGGTTT+GGG - chr1_1:7372164-7372183 Msa0004930:CDS 25.0%
!! TGATGAGCTATTCATATTTT+GGG - chr1_1:7372376-7372395 None:intergenic 25.0%
! TTATGAATCTAAATCTGTCA+AGG - chr1_1:7372490-7372509 None:intergenic 25.0%
! TGACAGATTTAGATTCATAA+TGG + chr1_1:7372490-7372509 Msa0004920:intron 25.0%
!!! AGTTTTGGTTACAAATAAGT+GGG - chr1_1:7372521-7372540 None:intergenic 25.0%
!! ACTGAATTTTGTGACAAAAT+GGG - chr1_1:7372613-7372632 None:intergenic 25.0%
!! TACTGAATTTTGTGACAAAA+TGG - chr1_1:7372614-7372633 None:intergenic 25.0%
!! CACATTGTTTCATTTAGTTT+GGG - chr1_1:7372661-7372680 None:intergenic 25.0%
! ACACATTGTTTCATTTAGTT+TGG - chr1_1:7372662-7372681 None:intergenic 25.0%
!! CTAAATGAAACAATGTGTTT+TGG + chr1_1:7372664-7372683 Msa0004920:intron 25.0%
! AGGTATAAAAGACAATGTTA+TGG - chr1_1:7372812-7372831 None:intergenic 25.0%
! AGAAAATGTTGTAGAAAGTT+AGG + chr1_1:7373361-7373380 Msa0004920:intron 25.0%
! GAAAATGTTGTAGAAAGTTA+GGG + chr1_1:7373362-7373381 Msa0004920:intron 25.0%
!! AAAGTAGAAATTGTTGTTGT+TGG + chr1_1:7373390-7373409 Msa0004920:CDS 25.0%
!! AAGTAGAAATTGTTGTTGTT+GGG + chr1_1:7373391-7373410 Msa0004920:CDS 25.0%
! TGGAAATGTTGAATATTTGA+TGG + chr1_1:7373479-7373498 Msa0004920:CDS 25.0%
! GGAAATGTTGAATATTTGAT+GGG + chr1_1:7373480-7373499 Msa0004920:CDS 25.0%
!! TATGATGATTATGATGATGA+TGG + chr1_1:7373546-7373565 Msa0004920:CDS 25.0%
!! ATGATGATTATGATGATGAT+GGG + chr1_1:7373547-7373566 Msa0004920:CDS 25.0%
! GAAGAAATCACTATTGTTAT+GGG + chr1_1:7373689-7373708 Msa0004920:three_prime_UTR 25.0%
! TTGATTATAATGTTGTGTAG+CGG + chr1_1:7373929-7373948 Msa0004920:three_prime_UTR 25.0%
! AGAAGAAAAACAAAACGAAA+AGG - chr1_1:7374086-7374105 None:intergenic 25.0%
! AAATAGATTGTAGTTTGAGA+TGG + chr1_1:7374161-7374180 Msa0004920:intron 25.0%
!! TTTTGCCTCATTTACAATTT+TGG + chr1_1:7374501-7374520 Msa0004920:intron 25.0%
! CAAATTCGTGGATTTAAAAA+TGG - chr1_1:7374532-7374551 None:intergenic 25.0%
!! ATGTTGAACATTTTCAAAAC+TGG - chr1_1:7374561-7374580 None:intergenic 25.0%
!! TTTCTTCATATATGCTTTTC+GGG + chr1_1:7374629-7374648 Msa0004920:intron 25.0%
! GATGTAAAATATTGTCTATG+TGG - chr1_1:7374736-7374755 None:intergenic 25.0%
! ATTCAACCTCAAAATGTATA+TGG + chr1_1:7374890-7374909 Msa0004920:intron 25.0%
! TTCAACCTCAAAATGTATAT+GGG + chr1_1:7374891-7374910 Msa0004920:intron 25.0%
!!! GAATCATTTTAAAAATTGGG+GGG + chr1_1:7374925-7374944 Msa0004920:intron 25.0%
!!! AATCATTTTAAAAATTGGGG+GGG + chr1_1:7374926-7374945 Msa0004920:intron 25.0%
! TAGTGAATGAGACAAAATAA+AGG + chr1_1:7374986-7375005 Msa0004920:intron 25.0%
! AGTGAATGAGACAAAATAAA+GGG + chr1_1:7374987-7375006 Msa0004920:intron 25.0%
!! TAGGCTTAAATGTAATTTTC+AGG - chr1_1:7375085-7375104 None:intergenic 25.0%
! GTTAACTAATAAAATCCACT+AGG - chr1_1:7375131-7375150 None:intergenic 25.0%
! GATATTAATACAAGTCTACA+AGG - chr1_1:7375213-7375232 None:intergenic 25.0%
! ACCCTTGAAAATATATGATA+AGG + chr1_1:7375311-7375330 Msa0004920:intron 25.0%
!! GCCTTATCATATATTTTCAA+GGG - chr1_1:7375315-7375334 None:intergenic 25.0%
!! TGCCTTATCATATATTTTCA+AGG - chr1_1:7375316-7375335 None:intergenic 25.0%
! ACAACTAGTGTGAAAATTAA+AGG + chr1_1:7375421-7375440 Msa0004920:intron 25.0%
! TCATGTAGATAAATCATATG+TGG - chr1_1:7375451-7375470 None:intergenic 25.0%
! CTAATTGTAAATGAAAGTTG+TGG - chr1_1:7375617-7375636 None:intergenic 25.0%
!!! ACATGAAATGTAAGTTTTGT+AGG + chr1_1:7375650-7375669 Msa0004920:intron 25.0%
! TAAAATGACATTGAGATATG+GGG + chr1_1:7375725-7375744 Msa0004920:intron 25.0%
!!! TGATTTTTTGTTATCATGAG+TGG + chr1_1:7375791-7375810 Msa0004920:intron 25.0%
!!! GATTTTTTGTTATCATGAGT+GGG + chr1_1:7375792-7375811 Msa0004920:intron 25.0%
! TTAATTATGAATTTCACCTG+TGG + chr1_1:7375888-7375907 Msa0004920:intron 25.0%
! AAAAATACAACTCAAAGAAC+CGG - chr1_1:7375979-7375998 None:intergenic 25.0%
! TAACAATACAATTCATATCG+TGG - chr1_1:7376257-7376276 None:intergenic 25.0%
! GTCTACTTAATATAGTATGT+AGG + chr1_1:7376444-7376463 Msa0004920:three_prime_UTR 25.0%
! CTCAAAATTACCAAATTATC+CGG - chr1_1:7376745-7376764 None:intergenic 25.0%
!! CTGTTGGTTCAAAATTTACT+TGG + chr1_1:7368649-7368668 Msa0004920:CDS 30.0%
TTGGTTCAAAATTTACTTGG+CGG + chr1_1:7368652-7368671 Msa0004920:CDS 30.0%
TCAATAGGACACACTAAAAT+TGG - chr1_1:7368810-7368829 None:intergenic 30.0%
ATAACATGCAAAGCTTCAAT+AGG - chr1_1:7368825-7368844 None:intergenic 30.0%
TATTGAAGCTTTGCATGTTA+TGG + chr1_1:7368824-7368843 Msa0004920:intron 30.0%
! CTCTCAAAACGAAATTGTTT+TGG - chr1_1:7368852-7368871 None:intergenic 30.0%
ATGACATGTTGAAAGATAGT+TGG + chr1_1:7368898-7368917 Msa0004920:intron 30.0%
TGACATGTTGAAAGATAGTT+GGG + chr1_1:7368899-7368918 Msa0004920:intron 30.0%
AAAGATAGTTGGGAAACTAA+TGG + chr1_1:7368909-7368928 Msa0004920:intron 30.0%
TCATAAAAAGAGAGAACTTG+AGG + chr1_1:7369007-7369026 Msa0004920:CDS 30.0%
ATGTGAAAACAATTGCTAGA+AGG + chr1_1:7369210-7369229 Msa0004920:intron 30.0%
!! AAATTGTTTGCTTTGGAGAA+TGG + chr1_1:7369326-7369345 Msa0004920:CDS 30.0%
TATAATCATTTGCCAACTCA+GGG - chr1_1:7369385-7369404 None:intergenic 30.0%
ATATAATCATTTGCCAACTC+AGG - chr1_1:7369386-7369405 None:intergenic 30.0%
TTAATCTCTTCATCACTAAC+AGG - chr1_1:7369425-7369444 None:intergenic 30.0%
AAATATGTATATGCAGGTTG+CGG - chr1_1:7369565-7369584 None:intergenic 30.0%
TATAATTAAAGTGCGGGTAA+TGG + chr1_1:7369927-7369946 Msa0004920:intron 30.0%
ATAATTAAAGTGCGGGTAAT+GGG + chr1_1:7369928-7369947 Msa0004920:intron 30.0%
! TATGGGCATTTTTACAAACA+CGG + chr1_1:7370029-7370048 Msa0004920:intron 30.0%
! ATTTTTACAAACACGGGTAT+GGG + chr1_1:7370036-7370055 Msa0004920:intron 30.0%
GACAATATTATGACACTACT+TGG + chr1_1:7370378-7370397 Msa0004920:intron 30.0%
GTTACCCAAACTAAATGAAA+CGG - chr1_1:7372654-7372673 None:intergenic 30.0%
TACTGAATTCTGTGACAAAA+TGG + chr1_1:7370566-7370585 Msa0004920:intron 30.0%
ACTGAATTCTGTGACAAAAT+GGG + chr1_1:7370567-7370586 Msa0004920:intron 30.0%
!!! TAATTTTGAGGCCTAGTATA+CGG - chr1_1:7370630-7370649 None:intergenic 30.0%
! TCCTGTTGATCATAATTTTG+AGG - chr1_1:7370642-7370661 None:intergenic 30.0%
TTTAGTTACAAATAAGTGGG+CGG + chr1_1:7370664-7370683 Msa0004920:intron 30.0%
! GTTATGTATCATACTAGCTT+TGG - chr1_1:7370712-7370731 None:intergenic 30.0%
! GTGATAAGCTATTCATTTTG+TGG + chr1_1:7370805-7370824 Msa0004920:intron 30.0%
!! GATTGATTAGTTTCATTGCT+TGG + chr1_1:7370925-7370944 Msa0004920:intron 30.0%
GTAAACAGATTCATATGGTT+AGG + chr1_1:7371018-7371037 Msa0004920:intron 30.0%
ATATGGTTAGGGATATAGAT+GGG + chr1_1:7371030-7371049 Msa0004920:intron 30.0%
ACACAACAAATCTAGCAAAT+TGG + chr1_1:7371123-7371142 Msa0004920:CDS 30.0%
TAAGGTTGACAAGATTAATG+AGG + chr1_1:7371280-7371299 Msa0004920:CDS 30.0%
TAGGTGTAACATGATTATTC+TGG - chr1_1:7371377-7371396 None:intergenic 30.0%
! ATTTGAAACAAGACCTTGTT+AGG + chr1_1:7371450-7371469 Msa0004920:intron 30.0%
TTAGGATATGCTATGAACAA+TGG + chr1_1:7371468-7371487 Msa0004920:intron 30.0%
! TCAACTTAATAGGTATCGTA+TGG - chr1_1:7371566-7371585 None:intergenic 30.0%
GTTCATAGCATATCTTAACA+AGG + chr1_1:7371722-7371741 Msa0004920:intron 30.0%
TTATCTTGATTTAGATCCAC+AGG - chr1_1:7371148-7371167 None:intergenic 30.0%
ACACAACAAATCTAGCAAAT+TGG - chr1_1:7371123-7371142 None:intergenic 30.0%
! ATATGGTTTGGGATATAGAT+GGG - chr1_1:7372153-7372172 Msa0004930:CDS 30.0%
GTAAACAGATTCATATGGTT+TGG - chr1_1:7371018-7371037 None:intergenic 30.0%
!! GATTGATTAGTTTCATTGCT+TGG - chr1_1:7370925-7370944 None:intergenic 30.0%
!! CTACTTACTTTTAAGCCATT+TGG - chr1_1:7372322-7372341 None:intergenic 30.0%
! GTGATGAGCTATTCATATTT+TGG - chr1_1:7372377-7372396 None:intergenic 30.0%
!!! GAGTTTTGGTTACAAATAAG+TGG - chr1_1:7372522-7372541 None:intergenic 30.0%
!!! TAATTTTGAGGCCTAATATC+CGG + chr1_1:7372552-7372571 Msa0004920:intron 30.0%
AGAATAATTCCCATCTCATT+AGG + chr1_1:7372925-7372944 Msa0004920:intron 30.0%
CTAAGGTTAATTTCATTCGA+AGG + chr1_1:7373137-7373156 Msa0004920:CDS 30.0%
ATTTCATTCGAAGGAATCAT+AGG + chr1_1:7373146-7373165 Msa0004920:CDS 30.0%
!! TGTTTTTGTGAAGATTGTGA+CGG + chr1_1:7373239-7373258 Msa0004920:CDS 30.0%
!!! TGATTCATTGGTTTTGGTTT+CGG + chr1_1:7373323-7373342 Msa0004920:CDS 30.0%
! CTACAACATTTTCTCAAACA+CGG - chr1_1:7373355-7373374 None:intergenic 30.0%
! AGTAGAAATTGTTGTTGTTG+GGG + chr1_1:7373392-7373411 Msa0004920:CDS 30.0%
AATGTTGAATATTTGATGGG+AGG + chr1_1:7373483-7373502 Msa0004920:CDS 30.0%
!! GATGATGGGTATATAATAGA+TGG + chr1_1:7373561-7373580 Msa0004920:CDS 30.0%
CGAAGAAATCACTATTGTTA+TGG + chr1_1:7373688-7373707 Msa0004920:three_prime_UTR 30.0%
!! AGAATGGATTATCGAAATTG+AGG + chr1_1:7373863-7373882 Msa0004920:three_prime_UTR 30.0%
AGTTGAGTTATGTTGAATTG+AGG + chr1_1:7373889-7373908 Msa0004920:three_prime_UTR 30.0%
! TTATGATGGTATGTTTTGCA+TGG + chr1_1:7374044-7374063 Msa0004920:three_prime_UTR 30.0%
GAAGTTATTTGTCTTGACTT+TGG + chr1_1:7374356-7374375 Msa0004920:intron 30.0%
!!! TGTTGTTTTGTTGATTTGAG+TGG + chr1_1:7374412-7374431 Msa0004920:intron 30.0%
!!! TTTTGTTGATTTGAGTGGAT+TGG + chr1_1:7374417-7374436 Msa0004920:intron 30.0%
ATTGGAGTTTACTTGGAAAT+CGG + chr1_1:7374435-7374454 Msa0004920:intron 30.0%
GTAAATGAGGCAAAAATAGA+GGG - chr1_1:7374496-7374515 None:intergenic 30.0%
TGTAAATGAGGCAAAAATAG+AGG - chr1_1:7374497-7374516 None:intergenic 30.0%
AGGAACCAAAATTGTAAATG+AGG - chr1_1:7374509-7374528 None:intergenic 30.0%
ATTCGTGGATTTAAAAATGG+AGG - chr1_1:7374529-7374548 None:intergenic 30.0%
!!! CGGGTTGATTTTTTATGATT+TGG + chr1_1:7374648-7374667 Msa0004920:intron 30.0%
TGAAAACGAGTTATTAAGAG+AGG + chr1_1:7374708-7374727 Msa0004920:intron 30.0%
TCAACCTCAAAATGTATATG+GGG + chr1_1:7374892-7374911 Msa0004920:intron 30.0%
!! ATCATTTTAAAAATTGGGGG+GGG + chr1_1:7374927-7374946 Msa0004920:intron 30.0%
TGGATTGAGTGTTTAAGTAT+AGG - chr1_1:7375104-7375123 None:intergenic 30.0%
AATAAAATCCACTAGGACAT+TGG - chr1_1:7375124-7375143 None:intergenic 30.0%
CAAGGATATTAAGACAAGTT+TGG - chr1_1:7375195-7375214 None:intergenic 30.0%
ATATGATAAGGCATATTTGG+TGG + chr1_1:7375323-7375342 Msa0004920:intron 30.0%
!! TACTTTTGAGAGTTGTGATT+TGG - chr1_1:7375698-7375717 None:intergenic 30.0%
TAAAGCTTCTATTGTCAAGT+TGG + chr1_1:7375841-7375860 Msa0004920:intron 30.0%
!! AAGTTGGATTAAGTTGAAGA+TGG + chr1_1:7375857-7375876 Msa0004920:intron 30.0%
!!! TTGAGTCAGAGTTTTAAAAC+TGG + chr1_1:7376024-7376043 Msa0004920:intron 30.0%
!!! GAGTTTTAAACAAAGAGACA+AGG - chr1_1:7376283-7376302 None:intergenic 30.0%
ATCTGCCAATTTCAGAAAAT+AGG - chr1_1:7376330-7376349 None:intergenic 30.0%
!!! ATTTTCTGAAATTGGCAGAT+AGG + chr1_1:7376330-7376349 Msa0004920:intron 30.0%
ATGATGTTAACCGGATAATT+TGG + chr1_1:7376732-7376751 Msa0004920:three_prime_UTR 30.0%
!! CGGATAATTTGGTAATTTTG+AGG + chr1_1:7376743-7376762 Msa0004920:three_prime_UTR 30.0%
! TAACATGGAACATTTTCAGT+CGG - chr1_1:7376799-7376818 None:intergenic 30.0%
TGGTTCAAAATTTACTTGGC+GGG + chr1_1:7368653-7368672 Msa0004920:CDS 35.0%
!! GAGCATTGAGTAATGATTTG+TGG + chr1_1:7368721-7368740 Msa0004920:CDS 35.0%
TGTTAGAACACTTCCAAGAT+TGG + chr1_1:7368767-7368786 Msa0004920:CDS 35.0%
TAGGACACACTAAAATTGGA+TGG - chr1_1:7368806-7368825 None:intergenic 35.0%
!!! AATTTCGTTTTGAGAGTGCT+TGG + chr1_1:7368856-7368875 Msa0004920:intron 35.0%
!! AATTTGAAGAGTGTTGAACG+AGG + chr1_1:7368945-7368964 Msa0004920:intron 35.0%
!! TGAAAAAGGAAGAGTTGATG+TGG + chr1_1:7369129-7369148 Msa0004920:CDS 35.0%
TGAAAACAATTGCTAGAAGG+AGG + chr1_1:7369213-7369232 Msa0004920:intron 35.0%
AATATGTATATGCAGGTTGC+GGG - chr1_1:7369564-7369583 None:intergenic 35.0%
CTCGTGAGCTTATGAATATA+AGG - chr1_1:7369695-7369714 None:intergenic 35.0%
! ATGGGCATTTTTACAAACAC+GGG + chr1_1:7370030-7370049 Msa0004920:intron 35.0%
! CATTTTTACAAACACGGGTA+TGG + chr1_1:7370035-7370054 Msa0004920:intron 35.0%
TACTATAGTAACCTACCCAT+TGG + chr1_1:7370065-7370084 Msa0004920:intron 35.0%
ACTATAGTAACCTACCCATT+GGG + chr1_1:7370066-7370085 Msa0004920:intron 35.0%
TTAAATGCCACTCACATGTA+GGG - chr1_1:7370105-7370124 None:intergenic 35.0%
! ACAAATTGCTTCTAAGGGAA+AGG + chr1_1:7370182-7370201 Msa0004920:intron 35.0%
ACTTCACATCTGAAAAGAAG+AGG + chr1_1:7370277-7370296 Msa0004920:CDS 35.0%
! TACAACAAGCTTTTGAACAG+TGG + chr1_1:7370300-7370319 Msa0004920:CDS 35.0%
ACAGTGGAATTTCACTGTAT+AGG + chr1_1:7370316-7370335 Msa0004920:CDS 35.0%
ATTTCACTGTATAGGTATCC+CGG + chr1_1:7370324-7370343 Msa0004920:CDS 35.0%
! ATGACACTACTTGGTAACAT+AGG + chr1_1:7370387-7370406 Msa0004920:intron 35.0%
! ATAGGCTGGAATGATTTTGT+AGG + chr1_1:7370405-7370424 Msa0004920:intron 35.0%
TTCAAGTGTAAAGGTTTCGA+AGG - chr1_1:7372735-7372754 None:intergenic 35.0%
TAAATGAAACGGTGTGTTTC+GGG - chr1_1:7370515-7370534 None:intergenic 35.0%
CTAAATGAAACGGTGTGTTT+CGG - chr1_1:7370516-7370535 None:intergenic 35.0%
ACACACCGTTTCATTTAGTT+TGG + chr1_1:7370518-7370537 Msa0004920:intron 35.0%
! CACACCGTTTCATTTAGTTT+GGG + chr1_1:7370519-7370538 Msa0004920:intron 35.0%
!!! AATTTTGAGGCCTAGTATAC+GGG - chr1_1:7370629-7370648 None:intergenic 35.0%
GCCTCAAAATTATGATCAAC+AGG + chr1_1:7370638-7370657 Msa0004920:intron 35.0%
TTAGTTACAAATAAGTGGGC+GGG + chr1_1:7370665-7370684 Msa0004920:intron 35.0%
! TATGTATGTAGCGGAAAACA+GGG - chr1_1:7372448-7372467 None:intergenic 35.0%
! ACATAGCTCTATGTATGTAG+CGG - chr1_1:7372439-7372458 None:intergenic 35.0%
! CTACTACCTTTTAAGCCATT+TGG + chr1_1:7370860-7370879 Msa0004920:intron 35.0%
! TTTTAAGCCATTTGGCATCT+GGG + chr1_1:7370868-7370887 Msa0004920:intron 35.0%
TAGTTTCATTGCTTGGAAGA+TGG + chr1_1:7370932-7370951 Msa0004920:intron 35.0%
AGTTTCATTGCTTGGAAGAT+GGG + chr1_1:7370933-7370952 Msa0004920:intron 35.0%
CTGAAGAAAATCACATTGAG+AGG + chr1_1:7370970-7370989 Msa0004920:intron 35.0%
CATATGGTTAGGGATATAGA+TGG + chr1_1:7371029-7371048 Msa0004920:intron 35.0%
! AATTTTGTTGCCAAATCCCT+TGG + chr1_1:7371094-7371113 Msa0004920:CDS 35.0%
! ATTTTGTTGCCAAATCCCTT+GGG + chr1_1:7371095-7371114 Msa0004920:CDS 35.0%
TGAAGATATGGGTGATAATC+AGG + chr1_1:7371196-7371215 Msa0004920:CDS 35.0%
TTGCTACAAGCATTTGTCTT+TGG - chr1_1:7371316-7371335 None:intergenic 35.0%
TAACATGATTATTCTGGACC+GGG - chr1_1:7371812-7371831 None:intergenic 35.0%
GTAACATGATTATTCTGGAC+CGG - chr1_1:7371811-7371830 None:intergenic 35.0%
GTTCATAGCATATCCTAACA+AGG - chr1_1:7371466-7371485 None:intergenic 35.0%
! TTGCTACAAGCATTTGACTT+TGG + chr1_1:7371867-7371886 Msa0004920:intron 35.0%
TATGGTTGACAAGATGAATG+AGG - chr1_1:7371903-7371922 None:intergenic 35.0%
TGAAGATATGGGTGATAATC+AGG - chr1_1:7371196-7371215 None:intergenic 35.0%
! TTTGTTGTGTCAGTTCTCAA+TGG + chr1_1:7372070-7372089 Msa0004920:intron 35.0%
! CATATGGTTTGGGATATAGA+TGG - chr1_1:7372154-7372173 Msa0004930:CDS 35.0%
! CCTCTCAATGTGATTTTCTT+CGG + chr1_1:7372210-7372229 Msa0004920:intron 35.0%
AGTTTCATTGCTTGGAAGAT+GGG - chr1_1:7370933-7370952 None:intergenic 35.0%
TAGTTTCATTGCTTGGAAGA+TGG - chr1_1:7370932-7370951 None:intergenic 35.0%
!! GCTATTCATATTTTGGGCTA+TGG - chr1_1:7372370-7372389 None:intergenic 35.0%
! ACATAGCTCTATGTATGTAG+CGG + chr1_1:7372439-7372458 Msa0004920:intron 35.0%
! TATGTATGTAGCGGAAAACA+GGG + chr1_1:7372448-7372467 Msa0004920:intron 35.0%
TTTGGTTACAAATAAGTGGG+CGG - chr1_1:7372518-7372537 None:intergenic 35.0%
TTTGTAACCAAAACTCCTGT+TGG + chr1_1:7372526-7372545 Msa0004920:intron 35.0%
! ATTATGACCAACAGGAGTTT+TGG - chr1_1:7372536-7372555 None:intergenic 35.0%
! TCCTGTTGGTCATAATTTTG+AGG + chr1_1:7372540-7372559 Msa0004920:intron 35.0%
!!! AATTTTGAGGCCTAATATCC+GGG + chr1_1:7372553-7372572 Msa0004920:intron 35.0%
TCTATCCTGAACAAAACAGA+TGG + chr1_1:7372702-7372721 Msa0004920:intron 35.0%
!! GATTACCATCTGTTTTGTTC+AGG - chr1_1:7372710-7372729 None:intergenic 35.0%
TTCAAGTGTAAAGGTTTCGA+AGG + chr1_1:7372735-7372754 Msa0004920:intron 35.0%
ATAGGCTGGAATGATTATGT+AGG - chr1_1:7372775-7372794 None:intergenic 35.0%
ACAGAGGAATTTCACTGAAT+AGG - chr1_1:7372864-7372883 None:intergenic 35.0%
! AACAACAAGCTTTTGAACAG+AGG - chr1_1:7372880-7372899 None:intergenic 35.0%
AAGGGTAAACCTAATGAGAT+GGG - chr1_1:7370243-7370262 None:intergenic 35.0%
AAAGGGTAAACCTAATGAGA+TGG - chr1_1:7370242-7370261 None:intergenic 35.0%
! TTTACCCTTTTTCTTGTCGT+TGG + chr1_1:7372948-7372967 Msa0004920:CDS 35.0%
AGTTCCAACGACAAGAAAAA+GGG - chr1_1:7372955-7372974 None:intergenic 35.0%
ATAAAGGCTGTTGATGTTGT+TGG - chr1_1:7372979-7372998 None:intergenic 35.0%
AACAACATCAACAGCCTTTA+TGG + chr1_1:7372978-7372997 Msa0004920:CDS 35.0%
AGAGAAAGGAATTAGGGTTA+GGG - chr1_1:7373006-7373025 None:intergenic 35.0%
CTTGAAGTGAATGTTGACAT+CGG - chr1_1:7373062-7373081 None:intergenic 35.0%
AATGTTGTAGAAAGTTAGGG+AGG + chr1_1:7373365-7373384 Msa0004920:intron 35.0%
! TTGTTGTTGTTGGGGATTAT+TGG + chr1_1:7373400-7373419 Msa0004920:CDS 35.0%
! TGTTGTTGTTGGGGATTATT+GGG + chr1_1:7373401-7373420 Msa0004920:CDS 35.0%
! CTTTGGATTCTTGTTGTGAA+TGG + chr1_1:7373459-7373478 Msa0004920:CDS 35.0%
AGAGGATTTGGATGATGAAT+TGG + chr1_1:7373515-7373534 Msa0004920:CDS 35.0%
ATGGAGAACAAGATGAAGAT+GGG + chr1_1:7373580-7373599 Msa0004920:CDS 35.0%
! TTGTCAAATAGCGACTTTTG+CGG + chr1_1:7373734-7373753 Msa0004920:three_prime_UTR 35.0%
!!! TTTTTTCCGCGATACACAAT+TGG + chr1_1:7373797-7373816 Msa0004920:three_prime_UTR 35.0%
GTATTTCCAATTGTGTATCG+CGG - chr1_1:7373806-7373825 None:intergenic 35.0%
TAAACGAAGCTAGACTGAAT+TGG + chr1_1:7373831-7373850 Msa0004920:three_prime_UTR 35.0%
AAACGAAGCTAGACTGAATT+GGG + chr1_1:7373832-7373851 Msa0004920:three_prime_UTR 35.0%
TAACTTCAAGGGTTTCATTG+TGG + chr1_1:7373952-7373971 Msa0004920:three_prime_UTR 35.0%
CAAAACATACCATCATAAGC+CGG - chr1_1:7374042-7374061 None:intergenic 35.0%
TAGATTGCAGCCATGATTAA+TGG + chr1_1:7374136-7374155 Msa0004920:intron 35.0%
! TGCTATGTTCGTAGTTTTTG+TGG + chr1_1:7374238-7374257 Msa0004920:intron 35.0%
! GCTATGTTCGTAGTTTTTGT+GGG + chr1_1:7374239-7374258 Msa0004920:intron 35.0%
! CTATGTTCGTAGTTTTTGTG+GGG + chr1_1:7374240-7374259 Msa0004920:intron 35.0%
GGGAGCAAATTCATAGTTTA+TGG + chr1_1:7374260-7374279 Msa0004920:intron 35.0%
! TGAACATTTTCAAAACTGGC+AGG - chr1_1:7374557-7374576 None:intergenic 35.0%
TGACAAATGAGATGCTTATG+TGG - chr1_1:7374860-7374879 None:intergenic 35.0%
CAACCTCAAAATGTATATGG+GGG + chr1_1:7374893-7374912 Msa0004920:intron 35.0%
AACCTCAAAATGTATATGGG+GGG + chr1_1:7374894-7374913 Msa0004920:intron 35.0%
!! TCATTTTAAAAATTGGGGGG+GGG + chr1_1:7374928-7374947 Msa0004920:intron 35.0%
ATTAGTTAACCTACCACCTA+CGG + chr1_1:7375141-7375160 Msa0004920:intron 35.0%
ATTAAGACAAGTTTGGTCCA+TGG - chr1_1:7375188-7375207 None:intergenic 35.0%
! ATATTTGGTGGTATACTGGA+AGG + chr1_1:7375335-7375354 Msa0004920:intron 35.0%
AATGTGCTCATGTGTTTGAT+TGG - chr1_1:7375401-7375420 None:intergenic 35.0%
GATTACATACATGTACATCG+AGG + chr1_1:7375469-7375488 Msa0004920:intron 35.0%
!! GAGGCCTTATCTTTTTATCT+TGG + chr1_1:7375488-7375507 Msa0004920:intron 35.0%
ATTGAGATATGGGGATGTTA+CGG + chr1_1:7375734-7375753 Msa0004920:intron 35.0%
!! TGGATTAAGTTGAAGATGGA+AGG + chr1_1:7375861-7375880 Msa0004920:intron 35.0%
!!! TTGTTGACTTGAGTTTTCCA+TGG + chr1_1:7375934-7375953 Msa0004920:intron 35.0%
! ACTTGAGTTTTCCATGGATA+TGG + chr1_1:7375940-7375959 Msa0004920:intron 35.0%
!!! TCAGAGTTTTAAAACTGGAC+TGG + chr1_1:7376029-7376048 Msa0004920:intron 35.0%
!!! ACCGTTTTAAAACTCAGAAC+TGG + chr1_1:7376052-7376071 Msa0004920:intron 35.0%
!!! CCCAGTTCTGAGTTTTAAAA+CGG - chr1_1:7376056-7376075 None:intergenic 35.0%
!!! CCGTTTTAAAACTCAGAACT+GGG + chr1_1:7376053-7376072 Msa0004920:intron 35.0%
!!! TTTTAAAACTCAGAACTGGG+AGG + chr1_1:7376056-7376075 Msa0004920:intron 35.0%
! ACTGGACAGTTTTTCTAAAC+CGG + chr1_1:7376095-7376114 Msa0004920:intron 35.0%
CATAAAGGAAAAGTTAAGCC+CGG - chr1_1:7376121-7376140 None:intergenic 35.0%
AGCTAAGTAGATCTAGACAA+TGG + chr1_1:7376492-7376511 Msa0004920:three_prime_UTR 35.0%
ACATGATTTCACAAGCTCAA+TGG - chr1_1:7376540-7376559 None:intergenic 35.0%
GGTTCAAAATTTACTTGGCG+GGG + chr1_1:7368654-7368673 Msa0004920:CDS 40.0%
AGTGTTCTAACAAGACCATC+AGG - chr1_1:7368759-7368778 None:intergenic 40.0%
TGGTCTGAGAAATCCAATCT+TGG - chr1_1:7368783-7368802 None:intergenic 40.0%
GACACACTAAAATTGGATGG+TGG - chr1_1:7368803-7368822 None:intergenic 40.0%
!!! TTTTGAGAGTGCTTGGCTTA+TGG + chr1_1:7368863-7368882 Msa0004920:intron 40.0%
!! AAGAGTTGATGTGGTTCCAA+AGG + chr1_1:7369138-7369157 Msa0004920:CDS 40.0%
ATAATGCTTAGAGATGCAGC+TGG + chr1_1:7369248-7369267 Msa0004920:intron 40.0%
TGGAGAATGGTCAATGTGTT+TGG + chr1_1:7369339-7369358 Msa0004920:CDS 40.0%
ATATGTATATGCAGGTTGCG+GGG - chr1_1:7369563-7369582 None:intergenic 40.0%
CTTAAATGCCACTCACATGT+AGG - chr1_1:7370106-7370125 None:intergenic 40.0%
TTCCAACGGCAAGAAGAAAA+AGG + chr1_1:7370224-7370243 Msa0004920:CDS 40.0%
TCCAACGGCAAGAAGAAAAA+GGG + chr1_1:7370225-7370244 Msa0004920:CDS 40.0%
! CTATGTATGTAGCGGAAAAC+AGG - chr1_1:7372447-7372466 None:intergenic 40.0%
!! GCTATTCATTTTGTGGGCTA+TGG + chr1_1:7370812-7370831 Msa0004920:intron 40.0%
AACAAATGTGCTGTAAACGC+TGG + chr1_1:7370837-7370856 Msa0004920:intron 40.0%
CAGATGCCAAATGGCTTAAA+AGG - chr1_1:7372313-7372332 None:intergenic 40.0%
! CTTTTAAGCCATTTGGCATC+TGG + chr1_1:7370867-7370886 Msa0004920:intron 40.0%
TTTAAGCCATTTGGCATCTG+GGG + chr1_1:7370869-7370888 Msa0004920:intron 40.0%
! TTTGTTGTGTCAGTTCCCAA+GGG - chr1_1:7371113-7371132 None:intergenic 40.0%
!! ATTTGTTGTGTCAGTTCCCA+AGG - chr1_1:7371114-7371133 None:intergenic 40.0%
AGATATGGGTGATAATCAGG+AGG + chr1_1:7371199-7371218 Msa0004920:CDS 40.0%
TCATCTTGCATTCCTCCTAT+AGG - chr1_1:7371950-7371969 Msa0004930:CDS 40.0%
GAATGCAAGATGACGATGAT+TGG + chr1_1:7371240-7371259 Msa0004920:CDS 40.0%
GTAGAGGATATTCGATGTTG+AGG - chr1_1:7371349-7371368 None:intergenic 40.0%
AACATCGAATATCCTCTACC+CGG + chr1_1:7371350-7371369 Msa0004920:intron 40.0%
! ACAACTTAGCAGGTATCGTA+TGG + chr1_1:7371600-7371619 Msa0004920:intron 40.0%
TCATCTTGCATTCCTCCTAT+AGG + chr1_1:7371950-7371969 Msa0004920:intron 40.0%
AGATATGGGTGATAATCAGG+AGG - chr1_1:7371199-7371218 None:intergenic 40.0%
TCTGCGCAAGATGAAGATAT+GGG - chr1_1:7371998-7372017 Msa0004930:CDS 40.0%
! GTGTCAGTTCTCAATGGATT+TGG + chr1_1:7372076-7372095 Msa0004920:intron 40.0%
CCGAAGAAAATCACATTGAG+AGG - chr1_1:7372213-7372232 Msa0004930:CDS 40.0%
TTTAAGCCATTTGGCATCTG+TGG - chr1_1:7370869-7370888 None:intergenic 40.0%
AACAAATGTGCTGTAAACGC+TGG - chr1_1:7370837-7370856 None:intergenic 40.0%
! GCTATGTCATGCACCATTTT+CGG - chr1_1:7372426-7372445 None:intergenic 40.0%
! CTATGTATGTAGCGGAAAAC+AGG + chr1_1:7372447-7372466 Msa0004920:intron 40.0%
TTGGTTACAAATAAGTGGGC+GGG - chr1_1:7372517-7372536 None:intergenic 40.0%
GCCTCAAAATTATGACCAAC+AGG - chr1_1:7372544-7372563 None:intergenic 40.0%
! ATGGCACTACTTGGTAACAT+AGG - chr1_1:7372793-7372812 None:intergenic 40.0%
GACAATGTTATGGCACTACT+TGG - chr1_1:7372802-7372821 None:intergenic 40.0%
ACATCACATCTGAAAAGACG+AGG - chr1_1:7372903-7372922 None:intergenic 40.0%
CAGTTCCAACGACAAGAAAA+AGG - chr1_1:7372956-7372975 None:intergenic 40.0%
TTAGGGTTAGGGTTCCATAA+AGG - chr1_1:7372995-7373014 None:intergenic 40.0%
CAGAGAAAGGAATTAGGGTT+AGG - chr1_1:7373007-7373026 None:intergenic 40.0%
CTGCAATAATGCTCCACTTA+AGG + chr1_1:7373179-7373198 Msa0004920:CDS 40.0%
AATAATGCTCCACTTAAGGC+TGG + chr1_1:7373183-7373202 Msa0004920:CDS 40.0%
ATTCCAAATCCAGCCTTAAG+TGG - chr1_1:7373195-7373214 None:intergenic 40.0%
ACTTAAGGCTGGATTTGGAA+TGG + chr1_1:7373194-7373213 Msa0004920:CDS 40.0%
!!! TGGGGTTGATTCATTGGTTT+TGG + chr1_1:7373317-7373336 Msa0004920:CDS 40.0%
! GTTGTTGTTGGGGATTATTG+GGG + chr1_1:7373402-7373421 Msa0004920:CDS 40.0%
GATTATTGGGGTAGGGATTT+GGG + chr1_1:7373414-7373433 Msa0004920:CDS 40.0%
ATTATTGGGGTAGGGATTTG+GGG + chr1_1:7373415-7373434 Msa0004920:CDS 40.0%
!! ATGCTGATTTGTGGCTTCTT+TGG + chr1_1:7373442-7373461 Msa0004920:CDS 40.0%
ATATTTGATGGGAGGAACAG+TGG + chr1_1:7373491-7373510 Msa0004920:CDS 40.0%
GATGGAGAACAAGATGAAGA+TGG + chr1_1:7373579-7373598 Msa0004920:CDS 40.0%
TTGTTATGGGATGCGCTATA+TGG + chr1_1:7373702-7373721 Msa0004920:three_prime_UTR 40.0%
AACGAAGCTAGACTGAATTG+GGG + chr1_1:7373833-7373852 Msa0004920:three_prime_UTR 40.0%
TTGTGTAGCGGTAACTTCAA+GGG + chr1_1:7373941-7373960 Msa0004920:three_prime_UTR 40.0%
GGTTTCATTGTGGTTATCTG+AGG + chr1_1:7373962-7373981 Msa0004920:three_prime_UTR 40.0%
GAAACTTCAGCAGTACAGAA+TGG - chr1_1:7374020-7374039 None:intergenic 40.0%
TTCTGTACTGCTGAAGTTTC+CGG + chr1_1:7374020-7374039 Msa0004920:three_prime_UTR 40.0%
!! TGAGTGGATTGGAGTTTACT+TGG + chr1_1:7374428-7374447 Msa0004920:intron 40.0%
ATGACACGACACTATCTAAG+TGG - chr1_1:7374826-7374845 None:intergenic 40.0%
ACCTCAAAATGTATATGGGG+GGG + chr1_1:7374895-7374914 Msa0004920:intron 40.0%
!! CATTTTAAAAATTGGGGGGG+GGG + chr1_1:7374929-7374948 Msa0004920:intron 40.0%
!! ATTTTAAAAATTGGGGGGGG+GGG + chr1_1:7374930-7374949 Msa0004920:intron 40.0%
TTAGTTAACCTACCACCTAC+GGG + chr1_1:7375142-7375161 Msa0004920:intron 40.0%
AATAGTTACCCCCTGAAGAT+AGG + chr1_1:7375266-7375285 Msa0004920:intron 40.0%
AGGGTCTATATTGTAGTCAG+AGG - chr1_1:7375296-7375315 None:intergenic 40.0%
! AGGCATATTTGGTGGTATAC+TGG + chr1_1:7375331-7375350 Msa0004920:intron 40.0%
! GGTATTGGATGTGTTCATTG+AGG + chr1_1:7375509-7375528 Msa0004920:intron 40.0%
TTGAGATATGGGGATGTTAC+GGG + chr1_1:7375735-7375754 Msa0004920:intron 40.0%
! TTACGGGGTCATTTAGAACA+CGG + chr1_1:7375751-7375770 Msa0004920:intron 40.0%
! TTTAGAACACGGTGTAGTGT+AGG + chr1_1:7375762-7375781 Msa0004920:intron 40.0%
! AGTTTTCCATGGATATGGTG+TGG + chr1_1:7375945-7375964 Msa0004920:intron 40.0%
! GTTTTCCATGGATATGGTGT+GGG + chr1_1:7375946-7375965 Msa0004920:intron 40.0%
ATACAACTCAAAGAACCGGT+CGG - chr1_1:7375975-7375994 None:intergenic 40.0%
GAGAAATTGAAGTCGCATGT+CGG + chr1_1:7376211-7376230 Msa0004920:intron 40.0%
ACAATTCATATCGTGGTGCA+GGG - chr1_1:7376250-7376269 None:intergenic 40.0%
TACAATTCATATCGTGGTGC+AGG - chr1_1:7376251-7376270 None:intergenic 40.0%
! TGCATAATCTTCCATCGACT+AGG - chr1_1:7376381-7376400 None:intergenic 40.0%
AAGTAGACTCGAGCAAGAAT+CGG - chr1_1:7376432-7376451 None:intergenic 40.0%
CAATGCGACATGATGTTAAC+CGG + chr1_1:7376723-7376742 Msa0004920:three_prime_UTR 40.0%
AGCAACACCGATGAACATAA+TGG + chr1_1:7376769-7376788 Msa0004920:three_prime_UTR 40.0%
CGGCAATCCATTATGTTCAT+CGG - chr1_1:7376779-7376798 None:intergenic 40.0%
TCCATGTTAGAAAAGCTCAC+CGG + chr1_1:7376810-7376829 Msa0004920:three_prime_UTR 40.0%
GTGATCTCTTTGAGCTTTAC+CGG - chr1_1:7376832-7376851 None:intergenic 40.0%
! GAGTAATGATTTGTGGCGTG+TGG + chr1_1:7368728-7368747 Msa0004920:CDS 45.0%
! TTGAACGAGGTATCAAGAGC+TGG + chr1_1:7368958-7368977 Msa0004920:CDS 45.0%
AGAGAACTTGAGGCGAGATT+GGG + chr1_1:7369017-7369036 Msa0004920:CDS 45.0%
TTAGAGATGCAGCTGGACAA+TGG + chr1_1:7369255-7369274 Msa0004920:intron 45.0%
TAGAGATGCAGCTGGACAAT+GGG + chr1_1:7369256-7369275 Msa0004920:intron 45.0%
TGCTGATCACGTGAAACTCA+TGG + chr1_1:7369286-7369305 Msa0004920:CDS 45.0%
AGAAGTAACCTTCCCTGAGT+TGG + chr1_1:7369370-7369389 Msa0004920:CDS 45.0%
ATCATTTGCCAACTCAGGGA+AGG - chr1_1:7369381-7369400 None:intergenic 45.0%
!! TAAAGTGCGGGTAATGGGTA+CGG + chr1_1:7369933-7369952 Msa0004920:intron 45.0%
ACTAATGTTGTCACCCACGA+GGG + chr1_1:7369995-7370014 Msa0004920:intron 45.0%
TACAAACACGGGTATGGGAA+AGG + chr1_1:7370041-7370060 Msa0004920:intron 45.0%
ACAAACACGGGTATGGGAAA+GGG + chr1_1:7370042-7370061 Msa0004920:intron 45.0%
TCACATGTAGGGAACGCAAT+GGG - chr1_1:7370094-7370113 None:intergenic 45.0%
GGAAAGGCTGTTGATGTTGT+TGG + chr1_1:7370198-7370217 Msa0004920:CDS 45.0%
GATGTTGTTGGCAGTTCCAA+CGG + chr1_1:7370210-7370229 Msa0004920:CDS 45.0%
! ACCCTTTTTCTTCTTGCCGT+TGG - chr1_1:7370229-7370248 None:intergenic 45.0%
!! TCACGTGCTTTAGAGGCATT+AGG + chr1_1:7370348-7370367 Msa0004920:CDS 45.0%
! CACTACTTGGTAACATAGGC+TGG + chr1_1:7370391-7370410 Msa0004920:intron 45.0%
TCTCTCGTAACCCGTATACT+AGG + chr1_1:7370616-7370635 Msa0004920:intron 45.0%
! GCTATGTCCTGCACCATTTT+CGG + chr1_1:7370756-7370775 Msa0004920:intron 45.0%
TCAACCCAAAGGCAAGATAG+TGG + chr1_1:7370896-7370915 Msa0004920:intron 45.0%
CCTGCGCAAGATGAAGATAT+GGG + chr1_1:7371185-7371204 Msa0004920:CDS 45.0%
CAGGAGGAACAACAACCTAT+AGG + chr1_1:7371215-7371234 Msa0004920:CDS 45.0%
GAGGAACAACAACCTATAGG+AGG + chr1_1:7371218-7371237 Msa0004920:CDS 45.0%
CTTGTATCGCACAACTTAGC+AGG + chr1_1:7371590-7371609 Msa0004920:intron 45.0%
ATCGTATGGTGCGAGATTTC+AGG + chr1_1:7371614-7371633 Msa0004920:intron 45.0%
GATTATTCTGGACCGAGTAG+AGG + chr1_1:7371818-7371837 Msa0004920:intron 45.0%
AACACCGAGTATCCTCTACT+CGG - chr1_1:7371833-7371852 None:intergenic 45.0%
ATGACGATGATTGACGTGGA+AGG - chr1_1:7371934-7371953 None:intergenic 45.0%
CAAGATGACGATGATTGACG+TGG - chr1_1:7371938-7371957 None:intergenic 45.0%
GAGGAACAACAACCTATAGG+AGG - chr1_1:7371218-7371237 None:intergenic 45.0%
CAGGAGGAACAACAACCTAT+AGG - chr1_1:7371215-7371234 None:intergenic 45.0%
GTCTGCGCAAGATGAAGATA+TGG - chr1_1:7371999-7372018 Msa0004930:CDS 45.0%
GACTGCTCTTGAAATACCTG+TGG + chr1_1:7372016-7372035 Msa0004920:intron 45.0%
TCAACCCAAAGGCAAGATAG+TGG - chr1_1:7370896-7370915 None:intergenic 45.0%
! ATTTTCGGTAGGGCGGAAAT+GGG - chr1_1:7372411-7372430 None:intergenic 45.0%
! GTCATGCACCATTTTCGGTA+GGG - chr1_1:7372421-7372440 None:intergenic 45.0%
! TGTCATGCACCATTTTCGGT+AGG - chr1_1:7372422-7372441 None:intergenic 45.0%
TCTCTCGTAACCCGGATATT+AGG - chr1_1:7372566-7372585 None:intergenic 45.0%
!! AAAATGGGTTTTGCAAGCGC+GGG - chr1_1:7372598-7372617 None:intergenic 45.0%
!! CAAAATGGGTTTTGCAAGCG+CGG - chr1_1:7372599-7372618 None:intergenic 45.0%
! CACTACTTGGTAACATAGGC+TGG - chr1_1:7370391-7370410 None:intergenic 45.0%
!! TCACGTGCTTTAGAGGCATT+AGG - chr1_1:7370348-7370367 None:intergenic 45.0%
!! TGCCTCTAAAGCACGTGAAT+CGG + chr1_1:7372834-7372853 Msa0004920:CDS 45.0%
CACGGCAGAGAAAGGAATTA+GGG - chr1_1:7373012-7373031 None:intergenic 45.0%
ACACGGCAGAGAAAGGAATT+AGG - chr1_1:7373013-7373032 None:intergenic 45.0%
TGCATTCGTAACCACAGACA+CGG - chr1_1:7373030-7373049 None:intergenic 45.0%
GTGAAGATTGTGACGGTTCA+TGG + chr1_1:7373246-7373265 Msa0004920:CDS 45.0%
GATTGTGACGGTTCATGGTA+AGG + chr1_1:7373251-7373270 Msa0004920:CDS 45.0%
!! TGCTGATTCGTCGTTGAAGT+GGG + chr1_1:7373281-7373300 Msa0004920:CDS 45.0%
TTGTTGGGGATTATTGGGGT+AGG + chr1_1:7373406-7373425 Msa0004920:CDS 45.0%
TGTTGGGGATTATTGGGGTA+GGG + chr1_1:7373407-7373426 Msa0004920:CDS 45.0%
GGATTATTGGGGTAGGGATT+TGG + chr1_1:7373413-7373432 Msa0004920:CDS 45.0%
AGGAACAGTGGAAGAGGATT+TGG + chr1_1:7373503-7373522 Msa0004920:CDS 45.0%
ACGAAGCTAGACTGAATTGG+GGG + chr1_1:7373834-7373853 Msa0004920:three_prime_UTR 45.0%
GTTGTGTAGCGGTAACTTCA+AGG + chr1_1:7373940-7373959 Msa0004920:three_prime_UTR 45.0%
CTGAAGTTTCCGGCTTATGA+TGG + chr1_1:7374030-7374049 Msa0004920:three_prime_UTR 45.0%
AACTGGCAGGATCAAATTCG+TGG - chr1_1:7374544-7374563 None:intergenic 45.0%
CCTCAAAATGTATATGGGGG+GGG + chr1_1:7374896-7374915 Msa0004920:intron 45.0%
CACTCAATCCAATGTCCTAG+TGG + chr1_1:7375113-7375132 Msa0004920:intron 45.0%
TAGTTAACCTACCACCTACG+GGG + chr1_1:7375143-7375162 Msa0004920:intron 45.0%
AGAGGACTTCCTATCTTCAG+GGG - chr1_1:7375278-7375297 None:intergenic 45.0%
CAGAGGACTTCCTATCTTCA+GGG - chr1_1:7375279-7375298 None:intergenic 45.0%
TCAGAGGACTTCCTATCTTC+AGG - chr1_1:7375280-7375299 None:intergenic 45.0%
TGAGATATGGGGATGTTACG+GGG + chr1_1:7375736-7375755 Msa0004920:intron 45.0%
! GACAGTTTTTCTAAACCGGC+CGG + chr1_1:7376099-7376118 Msa0004920:intron 45.0%
! ACAGTTTTTCTAAACCGGCC+GGG + chr1_1:7376100-7376119 Msa0004920:intron 45.0%
CAATTCATATCGTGGTGCAG+GGG - chr1_1:7376249-7376268 None:intergenic 45.0%
ATTGGCAGATAGGCGATTAG+AGG + chr1_1:7376340-7376359 Msa0004920:intron 45.0%
TTGGCAGATAGGCGATTAGA+GGG + chr1_1:7376341-7376360 Msa0004920:intron 45.0%
! GTGGTTTTCATCCTAGTCGA+TGG + chr1_1:7376367-7376386 Msa0004920:three_prime_UTR 45.0%
! AGTGCTATTACAGCTGAACG+AGG + chr1_1:7376401-7376420 Msa0004920:three_prime_UTR 45.0%
! GTGCTATTACAGCTGAACGA+GGG + chr1_1:7376402-7376421 Msa0004920:three_prime_UTR 45.0%
GCTCAATGGCGCTATAAACA+GGG - chr1_1:7376526-7376545 None:intergenic 45.0%
AGCTCAATGGCGCTATAAAC+AGG - chr1_1:7376527-7376546 None:intergenic 45.0%
CGGTTAACATCATGTCGCAT+TGG - chr1_1:7376725-7376744 None:intergenic 45.0%
! ACCGGTGAGCTTTTCTAACA+TGG - chr1_1:7376814-7376833 None:intergenic 45.0%
!!! ATAAATATTGTATTTAATTT+TGG + chr1_1:7369595-7369614 Msa0004920:intron 5.0%
TGTTGCCCTCCATGATACAG+AGG - chr1_1:7368681-7368700 None:intergenic 50.0%
GAGAGAACTTGAGGCGAGAT+TGG + chr1_1:7369016-7369035 Msa0004920:CDS 50.0%
CGAGATTGGGTGGTATACAG+CGG + chr1_1:7369030-7369049 Msa0004920:CDS 50.0%
ATACAGCGGCGGATACATCT+TGG + chr1_1:7369044-7369063 Msa0004920:CDS 50.0%
CATCTTGGCAGTCATTCGAG+AGG + chr1_1:7369059-7369078 Msa0004920:CDS 50.0%
!! AAAGTGCGGGTAATGGGTAC+GGG + chr1_1:7369934-7369953 Msa0004920:intron 50.0%
ATGGGTACTTAGGTGCCCAT+AGG + chr1_1:7369958-7369977 Msa0004920:intron 50.0%
TGGGTACTTAGGTGCCCATA+GGG + chr1_1:7369959-7369978 Msa0004920:intron 50.0%
ACTTAGGTGCCCATAGGGTA+TGG + chr1_1:7369964-7369983 Msa0004920:intron 50.0%
CTTAGGTGCCCATAGGGTAT+GGG + chr1_1:7369965-7369984 Msa0004920:intron 50.0%
TTAGGTGCCCATAGGGTATG+GGG + chr1_1:7369966-7369985 Msa0004920:intron 50.0%
CACTAATGTTGTCACCCACG+AGG + chr1_1:7369994-7370013 Msa0004920:intron 50.0%
GAACGCAATGGGTACCCAAT+GGG - chr1_1:7370083-7370102 None:intergenic 50.0%
CTCACATGTAGGGAACGCAA+TGG - chr1_1:7370095-7370114 None:intergenic 50.0%
TTGCGTTCCCTACATGTGAG+TGG + chr1_1:7370095-7370114 Msa0004920:intron 50.0%
!! TGCCTCTAAAGCACGTGAAC+CGG - chr1_1:7370346-7370365 None:intergenic 50.0%
! TGAAACGGTGTGTTTCGGGT+CGG - chr1_1:7370511-7370530 None:intergenic 50.0%
! CAAAATGGGTTTCGCAAGCG+CGG + chr1_1:7370581-7370600 Msa0004920:intron 50.0%
! AAAATGGGTTTCGCAAGCGC+GGG + chr1_1:7370582-7370601 Msa0004920:intron 50.0%
! TGTCCTGCACCATTTTCGGT+AGG + chr1_1:7370760-7370779 Msa0004920:intron 50.0%
! GTCCTGCACCATTTTCGGTA+GGG + chr1_1:7370761-7370780 Msa0004920:intron 50.0%
! CATTTTCGGTAGGGCGGAAA+CGG + chr1_1:7370770-7370789 Msa0004920:intron 50.0%
! ATTTTCGGTAGGGCGGAAAC+GGG + chr1_1:7370771-7370790 Msa0004920:intron 50.0%
! ACCCAAAGGCAAGATAGTGG+TGG + chr1_1:7370899-7370918 Msa0004920:intron 50.0%
CCCACCACTATCTTGCCTTT+GGG - chr1_1:7372279-7372298 None:intergenic 50.0%
! CCCAAAGGCAAGATAGTGGT+GGG + chr1_1:7370900-7370919 Msa0004920:intron 50.0%
! CCAAAGGCAAGATAGTGGTG+GGG + chr1_1:7370901-7370920 Msa0004920:intron 50.0%
! CAAAGGCAAGATAGTGGTGG+GGG + chr1_1:7370902-7370921 Msa0004920:intron 50.0%
! AAAGGCAAGATAGTGGTGGG+GGG + chr1_1:7370903-7370922 Msa0004920:intron 50.0%
CATTGCTTGGAAGATGGGAG+CGG + chr1_1:7370938-7370957 Msa0004920:intron 50.0%
GTGTCAGTTCCCAAGGGATT+TGG - chr1_1:7371107-7371126 None:intergenic 50.0%
GCCTGCGCAAGATGAAGATA+TGG + chr1_1:7371184-7371203 Msa0004920:CDS 50.0%
CCCATATCTTCATCTTGCGC+AGG - chr1_1:7371995-7372014 Msa0004930:CDS 50.0%
CAAGATGACGATGATTGGCG+TGG + chr1_1:7371245-7371264 Msa0004920:CDS 50.0%
GATTATTCTGGACCGGGTAG+AGG - chr1_1:7371365-7371384 None:intergenic 50.0%
TGGACCGAGTAGAGGATACT+CGG + chr1_1:7371826-7371845 Msa0004920:intron 50.0%
!! GTAGAGGATACTCGGTGTTG+AGG + chr1_1:7371834-7371853 Msa0004920:intron 50.0%
TGATTGACGTGGAAGGTTGG+AGG - chr1_1:7371927-7371946 None:intergenic 50.0%
CGATGATTGACGTGGAAGGT+TGG - chr1_1:7371930-7371949 None:intergenic 50.0%
! CAAAGGCAAGATAGTGGTGG+GGG - chr1_1:7370902-7370921 None:intergenic 50.0%
! CCAAAGGCAAGATAGTGGTG+GGG - chr1_1:7370901-7370920 None:intergenic 50.0%
! CCCAAAGGCAAGATAGTGGT+GGG - chr1_1:7370900-7370919 None:intergenic 50.0%
CCCACCACTATCTTGCCTTT+GGG + chr1_1:7372279-7372298 Msa0004920:intron 50.0%
! ACCCAAAGGCAAGATAGTGG+TGG - chr1_1:7370899-7370918 None:intergenic 50.0%
AAGCCATTTGGCATCTGTGG+CGG - chr1_1:7372310-7372329 None:intergenic 50.0%
! CATTTTCGGTAGGGCGGAAA+TGG - chr1_1:7370770-7370789 None:intergenic 50.0%
CATTTCCGCCCTACCGAAAA+TGG + chr1_1:7372410-7372429 Msa0004920:intron 50.0%
! ATGCACCATTTTCGGTAGGG+CGG - chr1_1:7372418-7372437 None:intergenic 50.0%
CTCATTCGTCTCTCGTAACC+CGG - chr1_1:7372574-7372593 None:intergenic 50.0%
!! AAATGGGTTTTGCAAGCGCG+GGG - chr1_1:7372597-7372616 None:intergenic 50.0%
!! GCCTCTAAAGCACGTGAATC+GGG + chr1_1:7372835-7372854 Msa0004920:CDS 50.0%
TCCCGATTCACGTGCTTTAG+AGG - chr1_1:7372839-7372858 None:intergenic 50.0%
GCTCCACTTAAGGCTGGATT+TGG + chr1_1:7373189-7373208 Msa0004920:CDS 50.0%
! GGCTGGATTTGGAATGGCTT+CGG + chr1_1:7373200-7373219 Msa0004920:CDS 50.0%
! GCTGGATTTGGAATGGCTTC+GGG + chr1_1:7373201-7373220 Msa0004920:CDS 50.0%
! CTGGATTTGGAATGGCTTCG+GGG + chr1_1:7373202-7373221 Msa0004920:CDS 50.0%
GACGGTTCATGGTAAGGTGA+AGG + chr1_1:7373257-7373276 Msa0004920:CDS 50.0%
!! CTGCTGATTCGTCGTTGAAG+TGG + chr1_1:7373280-7373299 Msa0004920:CDS 50.0%
TTGAAGTGGGAGATGAGGAG+TGG + chr1_1:7373294-7373313 Msa0004920:CDS 50.0%
! GAGTGGTGGGGTTGATTCAT+TGG + chr1_1:7373311-7373330 Msa0004920:CDS 50.0%
!! TGGGGAGGAATGCTGATTTG+TGG + chr1_1:7373433-7373452 Msa0004920:CDS 50.0%
CGAAGCTAGACTGAATTGGG+GGG + chr1_1:7373835-7373854 Msa0004920:three_prime_UTR 50.0%
GAAGCTAGACTGAATTGGGG+GGG + chr1_1:7373836-7373855 Msa0004920:three_prime_UTR 50.0%
GTGTCGTGTCATCAACTGAG+TGG + chr1_1:7374834-7374853 Msa0004920:intron 50.0%
! CCCCCCCCATATACATTTTG+AGG - chr1_1:7374899-7374918 None:intergenic 50.0%
GAGGATCTGGGTTCAAACCA+TGG + chr1_1:7375168-7375187 Msa0004920:intron 50.0%
GAGGACTTCCTATCTTCAGG+GGG - chr1_1:7375277-7375296 None:intergenic 50.0%
GGTGGTATACTGGAAGGTTG+TGG + chr1_1:7375341-7375360 Msa0004920:intron 50.0%
! TGGGAGGTGACTGGTTATAG+TGG + chr1_1:7376072-7376091 Msa0004920:intron 50.0%
!! GGTGACTGGTTATAGTGGAC+TGG + chr1_1:7376077-7376096 Msa0004920:intron 50.0%
AAGGAAAAGTTAAGCCCGGC+CGG - chr1_1:7376117-7376136 None:intergenic 50.0%
! ATAGGCGATTAGAGGGCATG+TGG + chr1_1:7376348-7376367 Msa0004920:three_prime_UTR 50.0%
GGGGTCCTCTGTATCATGGA+GGG + chr1_1:7368673-7368692 Msa0004920:CDS 55.0%
TGGCGTGTGGAGTTTCCTGA+TGG + chr1_1:7368741-7368760 Msa0004920:CDS 55.0%
GAACTTGAGGCGAGATTGGG+TGG + chr1_1:7369020-7369039 Msa0004920:CDS 55.0%
GATTGGGTGGTATACAGCGG+CGG + chr1_1:7369033-7369052 Msa0004920:CDS 55.0%
TCCAAAGGTCTCGTGCACGT+TGG + chr1_1:7369153-7369172 Msa0004920:CDS 55.0%
!! CGTGCACGTTGGCTTACAGA+TGG + chr1_1:7369164-7369183 Msa0004920:CDS 55.0%
AGATGCAGCTGGACAATGGG+TGG + chr1_1:7369259-7369278 Msa0004920:intron 55.0%
!! CGGGTAATGGGTACGGGTAT+GGG + chr1_1:7369940-7369959 Msa0004920:intron 55.0%
GGGTACGGGTATGGGTACTT+AGG + chr1_1:7369948-7369967 Msa0004920:intron 55.0%
TGCCCATAGGGTATGGGGAA+GGG + chr1_1:7369971-7369990 Msa0004920:intron 55.0%
TGCCCTTCCCCATACCCTAT+GGG - chr1_1:7369976-7369995 None:intergenic 55.0%
TGTTGTCACCCACGAGGGTA+CGG + chr1_1:7370000-7370019 Msa0004920:intron 55.0%
GCAATGGGTACCCAATGGGT+AGG - chr1_1:7370079-7370098 None:intergenic 55.0%
GGAACGCAATGGGTACCCAA+TGG - chr1_1:7370084-7370103 None:intergenic 55.0%
TCCCGGTTCACGTGCTTTAG+AGG + chr1_1:7370341-7370360 Msa0004920:CDS 55.0%
!! GCCTCTAAAGCACGTGAACC+GGG - chr1_1:7370345-7370364 None:intergenic 55.0%
! AAATGGGTTTCGCAAGCGCG+GGG + chr1_1:7370583-7370602 Msa0004920:intron 55.0%
! CTGCACCATTTTCGGTAGGG+CGG + chr1_1:7370764-7370783 Msa0004920:intron 55.0%
CGTTTCCGCCCTACCGAAAA+TGG - chr1_1:7370772-7370791 None:intergenic 55.0%
AAGCCATTTGGCATCTGGGG+CGG + chr1_1:7370872-7370891 Msa0004920:intron 55.0%
CCCCACCACTATCTTGCCTT+TGG - chr1_1:7372278-7372297 None:intergenic 55.0%
GGCTGCTCTTGAGGTACATG+TGG - chr1_1:7371167-7371186 None:intergenic 55.0%
CGATGATTGGCGTGGAACGT+TGG + chr1_1:7371253-7371272 Msa0004920:CDS 55.0%
TGATTGGCGTGGAACGTTGG+AGG + chr1_1:7371256-7371275 Msa0004920:CDS 55.0%
ACGTGGAAGGTTGGAGGCTA+TGG - chr1_1:7371921-7371940 None:intergenic 55.0%
CCCCACCACTATCTTGCCTT+TGG + chr1_1:7372278-7372297 Msa0004920:intron 55.0%
TCCTTTCTCTGCCGTGTCTG+TGG + chr1_1:7373016-7373035 Msa0004920:CDS 55.0%
ACCACAGACACGGCAGAGAA+AGG - chr1_1:7373020-7373039 None:intergenic 55.0%
TTGGAATGGCTTCGGGGTTG+CGG + chr1_1:7373208-7373227 Msa0004920:CDS 55.0%
CGTCGTTGAAGTGGGAGATG+AGG + chr1_1:7373289-7373308 Msa0004920:CDS 55.0%
AAGTGGGAGATGAGGAGTGG+TGG + chr1_1:7373297-7373316 Msa0004920:CDS 55.0%
AGTGGGAGATGAGGAGTGGT+GGG + chr1_1:7373298-7373317 Msa0004920:CDS 55.0%
ATTGGGGTAGGGATTTGGGG+AGG + chr1_1:7373418-7373437 Msa0004920:CDS 55.0%
GATGGGAGGAACAGTGGAAG+AGG + chr1_1:7373497-7373516 Msa0004920:CDS 55.0%
! GAATTGGGGGGGTGCAAGAA+TGG + chr1_1:7373847-7373866 Msa0004920:three_prime_UTR 55.0%
ACCTACGGGGTAGAGGATCT+GGG + chr1_1:7375156-7375175 Msa0004920:intron 55.0%
ACACACGAGGTTGCAACCAC+AGG - chr1_1:7375907-7375926 None:intergenic 55.0%
GGTTGCAACCTCGTGTGTGT+AGG + chr1_1:7375909-7375928 Msa0004920:intron 55.0%
CAACAACGCCTACACACACG+AGG - chr1_1:7375920-7375939 None:intergenic 55.0%
GGTTGCCCACACCATATCCA+TGG - chr1_1:7375954-7375973 None:intergenic 55.0%
ATATGGTGTGGGCAACCGAC+CGG + chr1_1:7375957-7375976 Msa0004920:intron 55.0%
ACTCAGAACTGGGAGGTGAC+TGG + chr1_1:7376063-7376082 Msa0004920:intron 55.0%
TGGCGGGGTCCTCTGTATCA+TGG + chr1_1:7368669-7368688 Msa0004920:CDS 60.0%
CGGGGTCCTCTGTATCATGG+AGG + chr1_1:7368672-7368691 Msa0004920:CDS 60.0%
GCCAACGTGCACGAGACCTT+TGG - chr1_1:7369157-7369176 None:intergenic 60.0%
TGCAGCTGGACAATGGGTGG+AGG + chr1_1:7369262-7369281 Msa0004920:intron 60.0%
TATATGCAGGTTGCGGGGCC+GGG - chr1_1:7369558-7369577 None:intergenic 60.0%
GTATATGCAGGTTGCGGGGC+CGG - chr1_1:7369559-7369578 None:intergenic 60.0%
!! GCGGGTAATGGGTACGGGTA+TGG + chr1_1:7369939-7369958 Msa0004920:intron 60.0%
GTGCCCATAGGGTATGGGGA+AGG + chr1_1:7369970-7369989 Msa0004920:intron 60.0%
GTGCCCTTCCCCATACCCTA+TGG - chr1_1:7369977-7369996 None:intergenic 60.0%
CGCCCTACCGAAAATGGTGC+AGG - chr1_1:7372416-7372435 None:intergenic 60.0%
TCTTGCGCAGGCTGCTCTTG+AGG - chr1_1:7371176-7371195 None:intergenic 60.0%
GCGTGGAACGTTGGAGGCTA+AGG + chr1_1:7371262-7371281 Msa0004920:CDS 60.0%
TCTGTGGCGGCTCAACCCAA+AGG - chr1_1:7372297-7372316 None:intergenic 60.0%
GAGCCGCCACAGATGCCAAA+TGG + chr1_1:7372304-7372323 Msa0004920:intron 60.0%
CGGTAGGGCGGAAATGGGAA+CGG - chr1_1:7372406-7372425 None:intergenic 60.0%
GTGGGAGATGAGGAGTGGTG+GGG + chr1_1:7373299-7373318 Msa0004920:CDS 60.0%
ACCTACCACCTACGGGGTAG+AGG + chr1_1:7375149-7375168 Msa0004920:intron 60.0%
TCCTCTACCCCGTAGGTGGT+AGG - chr1_1:7375153-7375172 None:intergenic 60.0%
CAGATCCTCTACCCCGTAGG+TGG - chr1_1:7375157-7375176 None:intergenic 60.0%
CACCTACGGGGTAGAGGATC+TGG + chr1_1:7375155-7375174 Msa0004920:intron 60.0%
ACCCAGATCCTCTACCCCGT+AGG - chr1_1:7375160-7375179 None:intergenic 60.0%
! TCACCCACGAGGGTACGGCT+CGG + chr1_1:7370005-7370024 Msa0004920:intron 65.0%
TACCCGAGCCGTACCCTCGT+GGG - chr1_1:7370011-7370030 None:intergenic 65.0%
ATACCCGAGCCGTACCCTCG+TGG - chr1_1:7370012-7370031 None:intergenic 65.0%
! ACGAGGGTACGGCTCGGGTA+TGG + chr1_1:7370011-7370030 Msa0004920:intron 65.0%
! CGAGGGTACGGCTCGGGTAT+GGG + chr1_1:7370012-7370031 Msa0004920:intron 65.0%
GGGCGGAAACGGGAACAGTG+AGG + chr1_1:7370781-7370800 Msa0004920:intron 65.0%
GAGCCGCCCCAGATGCCAAA+TGG - chr1_1:7370878-7370897 None:intergenic 65.0%
! TCTGGGGCGGCTCAACCCAA+AGG + chr1_1:7370885-7370904 Msa0004920:intron 65.0%
GGGCGGAAATGGGAACGGTG+AGG - chr1_1:7372401-7372420 None:intergenic 65.0%
! CACCCACGAGGGTACGGCTC+GGG + chr1_1:7370006-7370025 Msa0004920:intron 70.0%
ATGGCTTCGGGGTTGCGGCG+AGG + chr1_1:7373213-7373232 Msa0004920:CDS 70.0%
GCTTCGGGGTTGCGGCGAGG+TGG + chr1_1:7373216-7373235 Msa0004920:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 7368636 7376852 7368636 ID=Msa0004920;Name=Msa0004920
chr1_1 mRNA 7368636 7376852 7368636 ID=Msa0004920-mRNA-1;Parent=Msa0004920;Name=Msa0004920-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0.11|0.1|0.6|0.11|0.1|10|953|589
chr1_1 exon 7368636 7368839 7368636 ID=Msa0004920-mRNA-1:exon:2552;Parent=Msa0004920-mRNA-1
chr1_1 exon 7368954 7369185 7368954 ID=Msa0004920-mRNA-1:exon:2553;Parent=Msa0004920-mRNA-1
chr1_1 exon 7369267 7369424 7369267 ID=Msa0004920-mRNA-1:exon:2554;Parent=Msa0004920-mRNA-1
chr1_1 exon 7370198 7370369 7370198 ID=Msa0004920-mRNA-1:exon:2555;Parent=Msa0004920-mRNA-1
chr1_1 exon 7371090 7371328 7371090 ID=Msa0004920-mRNA-1:exon:2556;Parent=Msa0004920-mRNA-1
chr1_1 exon 7372790 7372915 7372790 ID=Msa0004920-mRNA-1:exon:2557;Parent=Msa0004920-mRNA-1
chr1_1 exon 7372947 7373167 7372947 ID=Msa0004920-mRNA-1:exon:2558;Parent=Msa0004920-mRNA-1
chr1_1 exon 7373179 7373353 7373179 ID=Msa0004920-mRNA-1:exon:2559;Parent=Msa0004920-mRNA-1
chr1_1 exon 7373375 7374065 7373375 ID=Msa0004920-mRNA-1:exon:2560;Parent=Msa0004920-mRNA-1
chr1_1 exon 7376348 7376852 7376348 ID=Msa0004920-mRNA-1:exon:2561;Parent=Msa0004920-mRNA-1
chr1_1 CDS 7368636 7368839 7368636 ID=Msa0004920-mRNA-1:cds;Parent=Msa0004920-mRNA-1
chr1_1 CDS 7368954 7369185 7368954 ID=Msa0004920-mRNA-1:cds;Parent=Msa0004920-mRNA-1
chr1_1 CDS 7369267 7369424 7369267 ID=Msa0004920-mRNA-1:cds;Parent=Msa0004920-mRNA-1
chr1_1 CDS 7370198 7370369 7370198 ID=Msa0004920-mRNA-1:cds;Parent=Msa0004920-mRNA-1
chr1_1 CDS 7371090 7371328 7371090 ID=Msa0004920-mRNA-1:cds;Parent=Msa0004920-mRNA-1
chr1_1 CDS 7372790 7372915 7372790 ID=Msa0004920-mRNA-1:cds;Parent=Msa0004920-mRNA-1
chr1_1 CDS 7372947 7373167 7372947 ID=Msa0004920-mRNA-1:cds;Parent=Msa0004920-mRNA-1
chr1_1 CDS 7373179 7373353 7373179 ID=Msa0004920-mRNA-1:cds;Parent=Msa0004920-mRNA-1
chr1_1 CDS 7373375 7373617 7373375 ID=Msa0004920-mRNA-1:cds;Parent=Msa0004920-mRNA-1
chr1_1 three_prime_UTR 7373618 7374065 7373618 ID=Msa0004920-mRNA-1:three_prime_utr;Parent=Msa0004920-mRNA-1
chr1_1 three_prime_UTR 7376348 7376852 7376348 ID=Msa0004920-mRNA-1:three_prime_utr;Parent=Msa0004920-mRNA-1
Gene Sequence

>Msa0004920

ATGGATCTTGGGGCTGTTGGTTCAAAATTTACTTGGCGGGGTCCTCTGTATCATGGAGGGCAACATATTTACGAAAGACTTGATCGAGCATTGAGTAATGATTTGTGGCGTGTGGAGTTTCCTGATGGTCTTGTTAGAACACTTCCAAGATTGGATTTCTCAGACCACCATCCAATTTTAGTGTGTCCTATTGAAGCTTTGCATAGTGTTGAACGAGGTATCAAGAGCTGGAAGTTTTCACATTTTGATAAAGTTCGTCATAAAAAGAGAGAACTTGAGGCGAGATTGGGTGGTATACAGCGGCGGATACATCTTGGCAGTCATTCGAGAGGATTGATTGTGCTAGAGAAAAAGTTGCAGCATGAATTGAACATTATTTTGAAAAAGGAAGAGTTGATGTGGTTCCAAAGGTCTCGTGCACGTTGGCTTACAGATGCTGGACAATGGGTGGAGGATGCTGATCACGTGAAACTCATGGTTAATGACTTTTATAAGAAATTGTTTGCTTTGGAGAATGGTCAATGTGTTTGGCAGCAGTCAGAAGTAACCTTCCCTGAGTTGGCAAATGATTATATTGTTAAGTTGGGTGCTCCTGGAAAGGCTGTTGATGTTGTTGGCAGTTCCAACGGCAAGAAGAAAAAGGGTAAACCTAATGAGATGAGAATTATTCTGAACTTCACATCTGAAAAGAAGAGGTACAACAAGCTTTTGAACAGTGGAATTTCACTGTATAGGTATCCCGGTTCACGTGCTTTAGAGGCATTAGATTCAATTTTGTTGCCAAATCCCTTGGGAACTGACACAACAAATCTAGCAAATTGGCTTTATCTTGATTTAGATCCACATGTACCTCAAGAGCAGCCTGCGCAAGATGAAGATATGGGTGATAATCAGGAGGAACAACAACCTATAGGAGGAATGCAAGATGACGATGATTGGCGTGGAACGTTGGAGGCTAAGGTTGACAAGATTAATGAGGAGCTTTTACTCCAAAGACAAATGCTTCCTATGTTACCAAGTAGTGCCATAACATTGTCTTTTATACCTAATGCCTCTAAAGCACGTGAATCGGGATACCTATTCAGTGAAATTCCTCTGTTCAAAAGCTTGTTGTTCCTCGTCTTTTCAGATGTTTACCCTTTTTCTTGTCGTTGGAACTGCCAACAACATCAACAGCCTTTATGGAACCCTAACCCTAATTCCTTTCTCTGCCGTGTCTGTGGTTACGAATGCAAATCACTTACCGATGTCAACATTCACTTCAAGCGAGTTCATGAGTATCAGACGCTGAATCGATTGAAATCTATTAAATTGAAACGTTCTAAGGTTAATTTCATTCGAAGGAATCATAGCTGCAATAATGCTCCACTTAAGGCTGGATTTGGAATGGCTTCGGGGTTGCGGCGAGGTGGTGTTTTTGTGAAGATTGTGACGGTTCATGGTAAGGTGAAGGCTGCTGATTCGTCGTTGAAGTGGGAGATGAGGAGTGGTGGGGTTGATTCATTGGTTTTGGTTTCGGATGATTCCAAAGTTAGGGAGGTGAAAGTAGAAATTGTTGTTGTTGGGGATTATTGGGGTAGGGATTTGGGGAGGAATGCTGATTTGTGGCTTCTTTGGATTCTTGTTGTGAATGGAAATGTTGAATATTTGATGGGAGGAACAGTGGAAGAGGATTTGGATGATGAATTGGAAGAAGAATATGATGATTATGATGATGATGGGTATATAATAGATGGAGAACAAGATGAAGATGGGTTTTATGTTTATTGA
Protein sequence

>Msa0004920

MDLGAVGSKFTWRGPLYHGGQHIYERLDRALSNDLWRVEFPDGLVRTLPRLDFSDHHPILVCPIEALHSVERGIKSWKFSHFDKVRHKKRELEARLGGIQRRIHLGSHSRGLIVLEKKLQHELNIILKKEELMWFQRSRARWLTDAGQWVEDADHVKLMVNDFYKKLFALENGQCVWQQSEVTFPELANDYIVKLGAPGKAVDVVGSSNGKKKKGKPNEMRIILNFTSEKKRYNKLLNSGISLYRYPGSRALEALDSILLPNPLGTDTTNLANWLYLDLDPHVPQEQPAQDEDMGDNQEEQQPIGGMQDDDDWRGTLEAKVDKINEELLLQRQMLPMLPSSAITLSFIPNASKARESGYLFSEIPLFKSLLFLVFSDVYPFSCRWNCQQHQQPLWNPNPNSFLCRVCGYECKSLTDVNIHFKRVHEYQTLNRLKSIKLKRSKVNFIRRNHSCNNAPLKAGFGMASGLRRGGVFVKIVTVHGKVKAADSSLKWEMRSGGVDSLVLVSDDSKVREVKVEIVVVGDYWGRDLGRNADLWLLWILVVNGNVEYLMGGTVEEDLDDELEEEYDDYDDDGYIIDGEQDEDGFYVY*