AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0678350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0678350 MtrunA17_Chr4g0065961 84.318 491 43 2 1 460 179 666 0.0 851
Msa0678350 MtrunA17_Chr4g0065981 82.556 493 52 2 1 462 186 675 0.0 845
Msa0678350 MtrunA17_Chr4g0065991 79.108 493 69 2 1 462 19 508 0.0 803
Msa0678350 MtrunA17_Chr4g0023331 88.164 414 15 2 80 462 5 415 0.0 740
Msa0678350 MtrunA17_Chr1g0205571 58.452 491 169 2 2 460 184 671 0.0 603
Msa0678350 MtrunA17_Chr1g0205541 47.390 479 209 4 2 447 190 658 6.33e-162 472
Msa0678350 MtrunA17_Chr3g0119641 45.135 483 225 6 3 448 234 713 7.67e-148 439
Msa0678350 MtrunA17_Chr3g0117081 27.859 481 293 11 7 447 270 736 5.28e-57 201
Msa0678350 MtrunA17_Chr5g0412801 27.197 478 300 9 7 447 242 708 3.24e-54 193
Msa0678350 MtrunA17_Chr4g0023321 93.671 79 5 0 1 79 184 262 4.76e-45 158
Msa0678350 MtrunA17_Chr8g0368011 26.804 291 173 5 7 265 279 561 3.02e-30 124
Msa0678350 MtrunA17_Chr8g0368021 32.877 146 92 4 313 455 21 163 2.53e-18 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0678350 AT1G31690.1 50.408 490 206 4 5 460 186 672 3.62e-178 515
Msa0678350 AT1G31710.1 51.037 482 198 5 3 449 187 665 2.01e-176 510
Msa0678350 AT1G31670.1 49.693 489 195 7 5 460 266 736 4.14e-163 478
Msa0678350 AT4G14940.1 46.680 482 210 5 2 447 179 649 2.30e-161 471
Msa0678350 AT4G12290.1 43.590 507 232 8 1 460 235 734 1.12e-147 439
Msa0678350 AT3G43670.1 43.595 484 232 7 2 447 194 674 1.04e-138 414
Msa0678350 AT1G62810.1 42.339 496 245 7 3 460 214 706 3.60e-138 414
Msa0678350 AT4G12290.2 42.045 440 204 7 1 393 235 670 1.60e-118 362
Msa0678350 AT4G12280.1 47.518 282 137 3 187 460 15 293 6.29e-90 276
Msa0678350 AT2G42490.1 27.615 478 298 10 7 447 277 743 1.37e-53 192
Msa0678350 AT4G12270.1 40.385 208 102 5 3 192 240 443 2.78e-46 167

Find 132 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAACTCTTCTTTGGTTAA+AGG 0.184536 4_4:-33927874 None:intergenic
CAAGCACATTGATGAGATTA+AGG 0.230800 4_4:+33932611 Msa0678350:CDS
GGGAGAATTATATGGTAAAT+TGG 0.270462 4_4:+33932632 Msa0678350:CDS
GACAATGTTCACAAGGGATA+TGG 0.272018 4_4:+33928114 Msa0678350:five_prime_UTR
GTGCTCAATAGTGGCATTAT+TGG 0.272866 4_4:-33933298 None:intergenic
AGGATTCCTCTCAAAGAAAT+TGG 0.275065 4_4:-33933341 None:intergenic
TTGGAGAAGAAGAGAGTAAA+AGG 0.281690 4_4:+33928274 Msa0678350:five_prime_UTR
CTTGCAAGACTATGCTGTTT+TGG 0.293628 4_4:-33928490 None:intergenic
CATTTACCAATTATAATGTT+TGG 0.296138 4_4:+33932994 Msa0678350:CDS
ATCAGGTATACTGGAAATTA+AGG 0.301138 4_4:+33932578 Msa0678350:CDS
GACAGTTAGAAACTCTTCTT+TGG 0.305096 4_4:-33927881 None:intergenic
AAAGTAGCTTTCCACTATAT+TGG 0.310445 4_4:+33927943 Msa0678350:five_prime_UTR
TGTGATCCAAACATTATAAT+TGG 0.311141 4_4:-33933000 None:intergenic
CCATTCTCCATGGGATGGTT+TGG 0.335288 4_4:+33928255 Msa0678350:five_prime_UTR
TACTTACTTACCTAACACTA+TGG 0.342742 4_4:-33928549 None:intergenic
TGATCAATGGCCATAGTGTT+AGG 0.343874 4_4:+33928539 Msa0678350:CDS
GAGAAAAGAACAAGTTTCAT+AGG 0.345952 4_4:-33927784 None:intergenic
GGCTGAGAACACTGAATATA+AGG 0.350226 4_4:+33928441 Msa0678350:CDS
TTTGTTGTTGCTATCATCAA+TGG 0.364988 4_4:+33928042 Msa0678350:five_prime_UTR
AAAATTCTTCTGTTGGATCT+TGG 0.365783 4_4:-33931209 None:intergenic
AGTGAATGAGCAGGAATTGC+TGG 0.369343 4_4:-33932936 None:intergenic
ATTTGTTATGAACTAAGGTT+TGG 0.369516 4_4:-33927903 None:intergenic
ACCATTGTTAATCCACTAAT+AGG 0.372587 4_4:-33928355 None:intergenic
GATGCTGGAGAGTATGGATT+TGG 0.380275 4_4:+33931249 Msa0678350:CDS
ATGAGATAGTAATTGATATA+AGG 0.381989 4_4:+33928073 Msa0678350:five_prime_UTR
GATGTATGTTTGTGTGGAAA+TGG 0.383202 4_4:-33927718 None:intergenic
GAATCAAACGATATCCGATA+TGG 0.385965 4_4:-33932914 None:intergenic
GTGATATTTGTTATGAACTA+AGG 0.389333 4_4:-33927908 None:intergenic
TTGAATATATAATCTTTGTC+GGG 0.397198 4_4:-33927976 None:intergenic
GATAGCACTATCAGGTATAC+TGG 0.397693 4_4:+33932569 Msa0678350:intron
GTTTATTCAGTTGGGCCAAC+TGG 0.401555 4_4:+33931058 Msa0678350:intron
AATACTTACCGAGGGCTTGA+TGG 0.401597 4_4:-33931660 None:intergenic
CCTAGAGATGTTGCATGGCC+TGG 0.402113 4_4:+33933382 Msa0678350:CDS
GAGATTAAGGGAGAATTATA+TGG 0.405083 4_4:+33932624 Msa0678350:CDS
GAAAGCTACTTTGTTCTTTG+AGG 0.405262 4_4:-33927932 None:intergenic
TGCTCAATAGTGGCATTATT+GGG 0.406039 4_4:-33933297 None:intergenic
AAACAGATGACATTTATTCA+TGG 0.407339 4_4:-33933491 None:intergenic
CAAGATAGTAAATGTAGAAA+TGG 0.407399 4_4:-33932686 None:intergenic
AAAGCTACTTTGTTCTTTGA+GGG 0.409518 4_4:-33927931 None:intergenic
TCTATACAGATAGCACTATC+AGG 0.413442 4_4:+33932561 Msa0678350:intron
TTAAAGTAAAATTCTTCTGT+TGG 0.413488 4_4:-33931216 None:intergenic
GAGATGACACTTTAGCTGTT+TGG 0.415058 4_4:+33933078 Msa0678350:CDS
TCAAAACAAAGCCCACCATT+TGG 0.419693 4_4:+33928466 Msa0678350:CDS
ACATATATTCACTCTGTAGA+TGG 0.423715 4_4:+33931333 Msa0678350:CDS
TTTGAATATATAATCTTTGT+CGG 0.437747 4_4:-33927977 None:intergenic
ACTGCGGTTGGAAACCATAT+CGG 0.441895 4_4:+33932900 Msa0678350:CDS
GATTTACGATGAATTACTAT+AGG 0.442935 4_4:-33928018 None:intergenic
ATTGGGAAGTCTTCCTGTGC+TGG 0.443127 4_4:-33933280 None:intergenic
TTCGTAGAGTATTATACAAA+GGG 0.445735 4_4:+33931160 Msa0678350:CDS
TCTTCTGTTGGATCTTGGTA+TGG 0.449968 4_4:-33931204 None:intergenic
GTAAATGCACCGCGTATTTG+TGG 0.451697 4_4:-33932978 None:intergenic
TGAGCACTTCATTTGAGCTC+AGG 0.454008 4_4:+33933314 Msa0678350:CDS
ACTTCCATCTGTGATTCTTA+CGG 0.461345 4_4:-33932760 None:intergenic
GCTTTCCACTATATTGGCCT+AGG 0.464842 4_4:+33927949 Msa0678350:five_prime_UTR
CCAAACCATCCCATGGAGAA+TGG 0.469490 4_4:-33928255 None:intergenic
AGAAAAGAACAAGTTTCATA+GGG 0.477528 4_4:-33927783 None:intergenic
ATATTTCAATGGAAGCTTTG+TGG 0.478356 4_4:-33928172 None:intergenic
GGTCCTGGCTTCTTGATCAA+TGG 0.482633 4_4:+33928526 Msa0678350:CDS
AAGCACATTGATGAGATTAA+GGG 0.489295 4_4:+33932612 Msa0678350:CDS
GCCAACTGGAAGTTTCATAT+AGG 0.492654 4_4:+33931072 Msa0678350:CDS
AAGCTAGTGAAGCTAGCTAT+AGG 0.502086 4_4:+33927741 Msa0678350:five_prime_UTR
AGTCATCAACCTCATGGTCC+TGG 0.502438 4_4:+33928511 Msa0678350:CDS
ATGCAACATCTCTAGGAGAA+AGG 0.502565 4_4:-33933375 None:intergenic
TCAAATGAAGTGCTCAATAG+TGG 0.503411 4_4:-33933307 None:intergenic
TATTTGTGGATAATCATCTT+CGG 0.512811 4_4:-33932964 None:intergenic
TGCAACATCTCTAGGAGAAA+GGG 0.513197 4_4:-33933374 None:intergenic
CCAGGCCATGCAACATCTCT+AGG 0.514960 4_4:-33933382 None:intergenic
GGCCAACCAATTTCTTTGAG+AGG 0.515922 4_4:+33933335 Msa0678350:CDS
TTGGTATCAGCAAACAGCAT+TGG 0.517312 4_4:+33932651 Msa0678350:CDS
TTCCTCTCAAAGAAATTGGT+TGG 0.518503 4_4:-33933337 None:intergenic
TTATATCAATTACTATCTCA+TGG 0.520413 4_4:-33928071 None:intergenic
ATGAAAGGAGGATATTTCAA+TGG 0.522174 4_4:-33928183 None:intergenic
TTAATCACGACTAGTTCAGC+TGG 0.526814 4_4:-33932864 None:intergenic
CATAGTAATGTGGCATGTAG+TGG 0.528378 4_4:+33933243 Msa0678350:CDS
TGTGGTGGACAATCACGGTT+AGG 0.538796 4_4:-33931294 None:intergenic
CAAGTGGATGTTGATGCAAT+GGG 0.539665 4_4:-33927849 None:intergenic
AGACCACTGCTTGGAAGTAG+AGG 0.540355 4_4:-33927819 None:intergenic
GGTCACCTAGGCCAATATAG+TGG 0.544001 4_4:-33927954 None:intergenic
GTGCTCCATTCTCCATGGGA+TGG 0.547411 4_4:+33928250 Msa0678350:five_prime_UTR
TTCTTCTCCAAACCATCCCA+TGG 0.551724 4_4:-33928262 None:intergenic
CTTGCATTCATCATGCCTAT+CGG 0.556506 4_4:+33933430 Msa0678350:three_prime_UTR
AAGAACAAGTTTCATAGGGG+TGG 0.557273 4_4:-33927779 None:intergenic
TTTCGTAGAGTATTATACAA+AGG 0.560841 4_4:+33931159 Msa0678350:CDS
AGTGTGTGCTCCATTCTCCA+TGG 0.565076 4_4:+33928245 Msa0678350:five_prime_UTR
GATTGGGAGTTCAAAACAAG+TGG 0.565272 4_4:+33931635 Msa0678350:CDS
ATAGTAATGTGGCATGTAGT+GGG 0.565825 4_4:+33933244 Msa0678350:CDS
AATTCATCATGTTCCAGCAC+AGG 0.568297 4_4:+33933267 Msa0678350:CDS
CACAAATCGCATTCTTCAAG+AGG 0.573831 4_4:-33931365 None:intergenic
AGTAAATGTAGAAATGGTCA+TGG 0.576017 4_4:-33932680 None:intergenic
TTCATTGAAGCAATGAAAGG+AGG 0.576808 4_4:-33928195 None:intergenic
AGAAATTGAAGTTGTGCCTA+CGG 0.578180 4_4:+33928420 Msa0678350:CDS
GTTTGAACCGTAGTCACCGT+TGG 0.579273 4_4:+33931593 Msa0678350:intron
TCGGTTAGAAGTGAATGAGC+AGG 0.579447 4_4:-33932945 None:intergenic
TTTCTCCTAGAGATGTTGCA+TGG 0.580788 4_4:+33933377 Msa0678350:CDS
TCTTTGGTTAAAGGATCAAG+TGG 0.581061 4_4:-33927865 None:intergenic
ATAGGATTTGATGTACGAGC+TGG 0.583714 4_4:+33931090 Msa0678350:CDS
CTTGCAAGTCATCAACCTCA+TGG 0.583899 4_4:+33928505 Msa0678350:CDS
TCAAGTGGATGTTGATGCAA+TGG 0.584812 4_4:-33927850 None:intergenic
TATGTTATTTAAGGGCACTT+CGG 0.591014 4_4:+33927688 None:intergenic
AAGCTACTTTGTTCTTTGAG+GGG 0.591494 4_4:-33927930 None:intergenic
TGGCCATTGATCAAGAAGCC+AGG 0.591551 4_4:-33928529 None:intergenic
AACATTGTCATAGTTTCCAA+CGG 0.593674 4_4:-33931609 None:intergenic
GCCTATTAGTGGATTAACAA+TGG 0.596660 4_4:+33928354 Msa0678350:CDS
AAGTGGTTCCATCAAGCCCT+CGG 0.599683 4_4:+33931652 Msa0678350:CDS
TAGCTTGATGTATGTTTGTG+TGG 0.601595 4_4:-33927724 None:intergenic
GTGTGTGCTCCATTCTCCAT+GGG 0.603379 4_4:+33928246 Msa0678350:five_prime_UTR
TCCTATATGAAACTTCCAGT+TGG 0.603457 4_4:-33931073 None:intergenic
GAGCGTGTGGTGGACAATCA+CGG 0.605614 4_4:-33931299 None:intergenic
TGAATATATAATCTTTGTCG+GGG 0.606417 4_4:-33927975 None:intergenic
TGTCTCTGACAATGTTCACA+AGG 0.607100 4_4:+33928107 Msa0678350:five_prime_UTR
AATAGATCAGACCGTCCGAT+AGG 0.610096 4_4:-33933445 None:intergenic
AATCTTTGTCGGGGTCACCT+AGG 0.615313 4_4:-33927966 None:intergenic
CTCTATGTTGATCATAGTCG+CGG 0.615782 4_4:+33933056 Msa0678350:CDS
ATCGCATTCTTCAAGAGGCG+TGG 0.621173 4_4:-33931360 None:intergenic
GGGTTACAGAGACCACTGCT+TGG 0.623059 4_4:-33927828 None:intergenic
ATGTTATCTCTTGAGGAACA+AGG 0.623725 4_4:+33928144 Msa0678350:five_prime_UTR
TATTCAGTGTTCTCAGCCGT+AGG 0.626136 4_4:-33928436 None:intergenic
GAATAGAGACATTGTAAACA+AGG 0.627401 4_4:+33933219 Msa0678350:CDS
CATTCATCATGCCTATCGGA+CGG 0.631379 4_4:+33933434 Msa0678350:three_prime_UTR
TGTTCCTCAAGAGATAACAT+AGG 0.638410 4_4:-33928141 None:intergenic
GTTAGGTATCAAAGAAACAG+TGG 0.640377 4_4:-33931277 None:intergenic
AAAACCGTAAGAATCACAGA+TGG 0.640824 4_4:+33932756 Msa0678350:CDS
ATCAAGAAGCCAGGACCATG+AGG 0.651972 4_4:-33928520 None:intergenic
TAAACAAGGACATAGTAATG+TGG 0.661720 4_4:+33933233 Msa0678350:CDS
TCAATGAAATGAGCGTGTGG+TGG 0.671621 4_4:-33931309 None:intergenic
GTCTCTGACAATGTTCACAA+GGG 0.673283 4_4:+33928108 Msa0678350:five_prime_UTR
GAAAAGAACAAGTTTCATAG+GGG 0.681016 4_4:-33927782 None:intergenic
ACTCCTCTACTTCCAAGCAG+TGG 0.685590 4_4:+33927816 Msa0678350:five_prime_UTR
AAGCTAGCTATAGGTCACAA+TGG 0.697219 4_4:+33927750 Msa0678350:five_prime_UTR
GTATCAATGAAATGAGCGTG+TGG 0.729682 4_4:-33931312 None:intergenic
AAGTGGATGTTGATGCAATG+GGG 0.761788 4_4:-33927848 None:intergenic
GATGATTATCCACAAATACG+CGG 0.772031 4_4:+33932969 Msa0678350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATTTTTTTAAATATAA+TGG + chr4_4:33930769-33930788 Msa0678350:intron 0.0%
!! AAAATTTATTCACATAAAAT+TGG + chr4_4:33930074-33930093 Msa0678350:intron 10.0%
!!! ATATTTAGAGTTTTTTAAAT+TGG - chr4_4:33930121-33930140 None:intergenic 10.0%
!! GATAAAATATAATTATTGTA+TGG + chr4_4:33930256-33930275 Msa0678350:intron 10.0%
!! AAGATTAAAATAAATTACAA+CGG + chr4_4:33930466-33930485 Msa0678350:intron 10.0%
!! GATAAAATATAATTATTGTA+TGG + chr4_4:33930256-33930275 Msa0678350:intron 10.0%
!!! TTACAATTTTTTTTTTGATA+AGG - chr4_4:33932374-33932393 None:intergenic 10.0%
!!! TTCTTTATTATTATTTTCTT+TGG + chr4_4:33932426-33932445 Msa0678350:intron 10.0%
!! TTTGAATATATAATCTTTGT+CGG - chr4_4:33927980-33927999 None:intergenic 15.0%
!!! AATATACTATTTTCGTAATA+AGG - chr4_4:33928626-33928645 None:intergenic 15.0%
!!! ATGCAACAATTTTTTTTTAA+GGG + chr4_4:33929571-33929590 Msa0678350:intron 15.0%
!! CTTAAAAATAAATAAGACTA+GGG + chr4_4:33930168-33930187 Msa0678350:intron 15.0%
!! TCAAAAACAATAATCATATT+TGG - chr4_4:33930221-33930240 None:intergenic 15.0%
!! GTATATGTATCTAAATAATA+TGG - chr4_4:33930296-33930315 None:intergenic 15.0%
!! TGTATAATTCTATAATCTAT+TGG + chr4_4:33930794-33930813 Msa0678350:intron 15.0%
!! AAGTTATAAATGAAAAAAGA+TGG - chr4_4:33930958-33930977 None:intergenic 15.0%
!!! AAACTTTATGATTTAATTTC+TGG + chr4_4:33930990-33931009 Msa0678350:intron 15.0%
!! ATTATTCTTACAAATTCATT+AGG - chr4_4:33931441-33931460 None:intergenic 15.0%
!!! TTAAACAAATATCTTTTTTG+TGG + chr4_4:33931892-33931911 Msa0678350:intron 15.0%
!! AAAAATAAATTCACAAAAAG+AGG + chr4_4:33932089-33932108 Msa0678350:intron 15.0%
!! AAAATAAATTCACAAAAAGA+GGG + chr4_4:33932090-33932109 Msa0678350:intron 15.0%
!! ATATAATAGAACTGAAAAAT+GGG + chr4_4:33933025-33933044 Msa0678350:CDS 15.0%
!! TTGAATATATAATCTTTGTC+GGG - chr4_4:33927979-33927998 None:intergenic 20.0%
!! TTATATCAATTACTATCTCA+TGG - chr4_4:33928074-33928093 None:intergenic 20.0%
!! ATGAGATAGTAATTGATATA+AGG + chr4_4:33928073-33928092 Msa0678350:five_prime_UTR 20.0%
!!! CTTTTTTACTTTCCATTTTT+AGG + chr4_4:33928591-33928610 Msa0678350:intron 20.0%
!! TTACGAAAATAGTATATTGA+TGG + chr4_4:33928628-33928647 Msa0678350:intron 20.0%
!!! TAAAATCAACTCTAAAGATT+TGG - chr4_4:33929175-33929194 None:intergenic 20.0%
!! TGCCCAATATTATTTAAAAA+GGG + chr4_4:33929324-33929343 Msa0678350:intron 20.0%
!!! CTCCCTTTTTAAATAATATT+GGG - chr4_4:33929329-33929348 None:intergenic 20.0%
!!! TCTCCCTTTTTAAATAATAT+TGG - chr4_4:33929330-33929349 None:intergenic 20.0%
!! ACTTAGGAAAAACAAAAATT+AGG + chr4_4:33929446-33929465 Msa0678350:intron 20.0%
!! CTTAAAAAAAAATTGTTGCA+TGG - chr4_4:33929572-33929591 None:intergenic 20.0%
!!! CATGCAACAATTTTTTTTTA+AGG + chr4_4:33929570-33929589 Msa0678350:intron 20.0%
!! CATATATGACCATTAATATA+GGG - chr4_4:33929929-33929948 None:intergenic 20.0%
!! ACATATATGACCATTAATAT+AGG - chr4_4:33929930-33929949 None:intergenic 20.0%
!!! TTATGTGAATAAATTTTGCA+AGG - chr4_4:33930071-33930090 None:intergenic 20.0%
!!! TGGATATTTTACATATTACA+AGG - chr4_4:33930101-33930120 None:intergenic 20.0%
!!! CCTAGTCTTATTTATTTTTA+AGG - chr4_4:33930170-33930189 None:intergenic 20.0%
!! CCTTAAAAATAAATAAGACT+AGG + chr4_4:33930167-33930186 Msa0678350:intron 20.0%
!!! ATATGATTATTGTTTTTGAG+TGG + chr4_4:33930222-33930241 Msa0678350:intron 20.0%
!! ATAAATGAAAAAAGATGGAA+AGG - chr4_4:33930338-33930357 None:intergenic 20.0%
!! CCAATATAAATGAAAAAAGA+TGG - chr4_4:33930343-33930362 None:intergenic 20.0%
!!! CCATCTTTTTTCATTTATAT+TGG + chr4_4:33930340-33930359 Msa0678350:intron 20.0%
!! CTAGTAAAATATATAGTTAC+AGG + chr4_4:33930516-33930535 Msa0678350:intron 20.0%
!! TAATTCTATAATCTATTGGT+TGG + chr4_4:33930798-33930817 Msa0678350:intron 20.0%
!! GTATACGTATCTAAATAATA+TGG - chr4_4:33930911-33930930 None:intergenic 20.0%
!! ATAAATGAAAAAAGATGGAA+AGG - chr4_4:33930338-33930357 None:intergenic 20.0%
!! TTAAAGTAAAATTCTTCTGT+TGG - chr4_4:33931219-33931238 None:intergenic 20.0%
!!! ATTTGTGTTTTTGAACAATA+TGG + chr4_4:33931381-33931400 Msa0678350:CDS 20.0%
!!! TCTCTTTGTTTTATTGTTTT+TGG + chr4_4:33931534-33931553 Msa0678350:intron 20.0%
!! TTTAATTAAATACTTACCGA+GGG - chr4_4:33931671-33931690 None:intergenic 20.0%
!! ACTATTTAAACTTTCAAAAG+TGG + chr4_4:33931782-33931801 Msa0678350:intron 20.0%
!!! TAAGACATAATATCTTTTTG+TGG + chr4_4:33931864-33931883 Msa0678350:intron 20.0%
!! AAAGATTTCAAAATCTTTAG+AGG + chr4_4:33931936-33931955 Msa0678350:intron 20.0%
!! TATGTACTGTATAAATCTAA+GGG + chr4_4:33932182-33932201 Msa0678350:intron 20.0%
!! CATTTACCAATTATAATGTT+TGG + chr4_4:33932994-33933013 Msa0678350:CDS 20.0%
!!! CATTTTTCAGTTCTATTATA+TGG - chr4_4:33933026-33933045 None:intergenic 20.0%
!! CATATAATAGAACTGAAAAA+TGG + chr4_4:33933024-33933043 Msa0678350:CDS 20.0%
! AGAAAAGAACAAGTTTCATA+GGG - chr4_4:33927786-33927805 None:intergenic 25.0%
!!! ATTTGTTATGAACTAAGGTT+TGG - chr4_4:33927906-33927925 None:intergenic 25.0%
!!! GTGATATTTGTTATGAACTA+AGG - chr4_4:33927911-33927930 None:intergenic 25.0%
! TGAATATATAATCTTTGTCG+GGG - chr4_4:33927978-33927997 None:intergenic 25.0%
! GATTTACGATGAATTACTAT+AGG - chr4_4:33928021-33928040 None:intergenic 25.0%
!! TTTTTCATTGAAGCAATGAA+AGG - chr4_4:33928201-33928220 None:intergenic 25.0%
! TTAAAAATAAGGACACTCTA+AGG - chr4_4:33928820-33928839 None:intergenic 25.0%
! TGTGAGTATTAAATAACGAT+CGG - chr4_4:33928938-33928957 None:intergenic 25.0%
! ATTAGACATTTAAACTAGGT+TGG + chr4_4:33929270-33929289 Msa0678350:intron 25.0%
! CTGCCCAATATTATTTAAAA+AGG + chr4_4:33929323-33929342 Msa0678350:intron 25.0%
! GCAAAATAAAGGCAAAATAA+AGG + chr4_4:33929398-33929417 Msa0678350:intron 25.0%
!!! TTTTTGTTTTTCCTAAGTCT+TGG - chr4_4:33929444-33929463 None:intergenic 25.0%
! AAAAATTAGGAAGTCCAAAA+TGG + chr4_4:33929459-33929478 Msa0678350:intron 25.0%
!!! GTTTATTGGGATGATTTTTT+TGG - chr4_4:33929488-33929507 None:intergenic 25.0%
! AAAAATCATCCCAATAAACA+AGG + chr4_4:33929489-33929508 Msa0678350:intron 25.0%
! AAAATCATCCCAATAAACAA+GGG + chr4_4:33929490-33929509 Msa0678350:intron 25.0%
!! AAACTTTACCCTTGTTTATT+GGG - chr4_4:33929501-33929520 None:intergenic 25.0%
! ATTCTATCATTAATGTGGAT+TGG - chr4_4:33929528-33929547 None:intergenic 25.0%
!! CATATTTTTCGTGAAAGAAA+TGG - chr4_4:33929609-33929628 None:intergenic 25.0%
!! ATTTTGCAAGGACAAAAAAT+TGG - chr4_4:33930059-33930078 None:intergenic 25.0%
!!! TTTTTTCATTTATATTGGCG+TGG + chr4_4:33930345-33930364 Msa0678350:intron 25.0%
!!! TGCAATATCTATTTTAGTGA+TGG - chr4_4:33930416-33930435 None:intergenic 25.0%
!!! TAAGCATAGCACTTTTATTT+TGG - chr4_4:33930493-33930512 None:intergenic 25.0%
!!! TAAGCATAGCACTTTTATTT+TGG - chr4_4:33930493-33930512 None:intergenic 25.0%
! TCTTTATGTGTTTATTCAGT+TGG + chr4_4:33931049-33931068 Msa0678350:intron 25.0%
! CTTTATGTGTTTATTCAGTT+GGG + chr4_4:33931050-33931069 Msa0678350:intron 25.0%
!! TTTCGTAGAGTATTATACAA+AGG + chr4_4:33931159-33931178 Msa0678350:CDS 25.0%
!! TTCGTAGAGTATTATACAAA+GGG + chr4_4:33931160-33931179 Msa0678350:CDS 25.0%
! AACAATATGGTAGTATTATG+TGG + chr4_4:33931394-33931413 Msa0678350:intron 25.0%
! TCAAACAATCAAATTCACTT+CGG - chr4_4:33931579-33931598 None:intergenic 25.0%
!!! ACTATGACAATGTTTTAGAT+TGG + chr4_4:33931618-33931637 Msa0678350:CDS 25.0%
!!! CTATGACAATGTTTTAGATT+GGG + chr4_4:33931619-33931638 Msa0678350:CDS 25.0%
! GTTTAATTAAATACTTACCG+AGG - chr4_4:33931672-33931691 None:intergenic 25.0%
! AAAGTTTAAATAGTCTCCTA+AGG - chr4_4:33931776-33931795 None:intergenic 25.0%
! GTATGTACTGTATAAATCTA+AGG + chr4_4:33932181-33932200 Msa0678350:intron 25.0%
! AATTGACATTACATTAGACT+AGG + chr4_4:33932300-33932319 Msa0678350:intron 25.0%
! ATTGACATTACATTAGACTA+GGG + chr4_4:33932301-33932320 Msa0678350:intron 25.0%
!!! TATCTTGATTTTGATATCGA+CGG + chr4_4:33932702-33932721 Msa0678350:CDS 25.0%
! GTTCAAAAAGAAAGAGTTAT+TGG + chr4_4:33932781-33932800 Msa0678350:CDS 25.0%
! TAATTCGAACAAAAAAACTG+CGG + chr4_4:33932884-33932903 Msa0678350:CDS 25.0%
! TATTTGTGGATAATCATCTT+CGG - chr4_4:33932967-33932986 None:intergenic 25.0%
! TGTGATCCAAACATTATAAT+TGG - chr4_4:33933003-33933022 None:intergenic 25.0%
!!! AGCATTTTCTAGTTTTACTT+GGG - chr4_4:33933412-33933431 None:intergenic 25.0%
!!! AAGCATTTTCTAGTTTTACT+TGG - chr4_4:33933413-33933432 None:intergenic 25.0%
! AAACAGATGACATTTATTCA+TGG - chr4_4:33933494-33933513 None:intergenic 25.0%
GAAAAGAACAAGTTTCATAG+GGG - chr4_4:33927785-33927804 None:intergenic 30.0%
GAGAAAAGAACAAGTTTCAT+AGG - chr4_4:33927787-33927806 None:intergenic 30.0%
AGAAACTCTTCTTTGGTTAA+AGG - chr4_4:33927877-33927896 None:intergenic 30.0%
! AAAGCTACTTTGTTCTTTGA+GGG - chr4_4:33927934-33927953 None:intergenic 30.0%
AAAGTAGCTTTCCACTATAT+TGG + chr4_4:33927943-33927962 Msa0678350:five_prime_UTR 30.0%
!! TTTGTTGTTGCTATCATCAA+TGG + chr4_4:33928042-33928061 Msa0678350:five_prime_UTR 30.0%
! TTTTCCTATGTTATCTCTTG+AGG + chr4_4:33928137-33928156 Msa0678350:five_prime_UTR 30.0%
ATATTTCAATGGAAGCTTTG+TGG - chr4_4:33928175-33928194 None:intergenic 30.0%
ATGAAAGGAGGATATTTCAA+TGG - chr4_4:33928186-33928205 None:intergenic 30.0%
ATTGCTTCAATGAAAAAGAG+AGG + chr4_4:33928204-33928223 Msa0678350:five_prime_UTR 30.0%
!!! ACACTGTTAATTTTTTCGTG+AGG + chr4_4:33928332-33928351 Msa0678350:CDS 30.0%
ACCATTGTTAATCCACTAAT+AGG - chr4_4:33928358-33928377 None:intergenic 30.0%
TACTTACTTACCTAACACTA+TGG - chr4_4:33928552-33928571 None:intergenic 30.0%
!!! TACTTTCCATTTTTAGGTGT+CGG + chr4_4:33928597-33928616 Msa0678350:intron 30.0%
!! AAATAGTATATTGATGGCGA+TGG + chr4_4:33928634-33928653 Msa0678350:intron 30.0%
!!! TCATGGTATTTGGTTTTTGA+AGG + chr4_4:33928659-33928678 Msa0678350:intron 30.0%
!!! CATGGTATTTGGTTTTTGAA+GGG + chr4_4:33928660-33928679 Msa0678350:intron 30.0%
! GGCACTTTTAACAACTTAAA+TGG + chr4_4:33928681-33928700 Msa0678350:intron 30.0%
! ACTTAAATGGTACGTTTTGT+AGG + chr4_4:33928694-33928713 Msa0678350:intron 30.0%
GATTGTGTTGTAAGTTGTAA+TGG + chr4_4:33928903-33928922 Msa0678350:intron 30.0%
CGTTATTTAATACTCACACA+AGG + chr4_4:33928940-33928959 Msa0678350:intron 30.0%
AAGATATTTCGTAGCTTGAA+CGG - chr4_4:33929071-33929090 None:intergenic 30.0%
GAGTTAATAAGATAAGCCTT+GGG - chr4_4:33929146-33929165 None:intergenic 30.0%
TGAGTTAATAAGATAAGCCT+TGG - chr4_4:33929147-33929166 None:intergenic 30.0%
GAGGATTAGACATTTAAACT+AGG + chr4_4:33929266-33929285 Msa0678350:intron 30.0%
AGGACAAAAAGGCAAAATAA+AGG + chr4_4:33929387-33929406 Msa0678350:intron 30.0%
AAACATAACAACCAAGACTT+AGG + chr4_4:33929430-33929449 Msa0678350:intron 30.0%
!!! GATTTTTTTGGAGACCATTT+TGG - chr4_4:33929476-33929495 None:intergenic 30.0%
! GAAACTTTACCCTTGTTTAT+TGG - chr4_4:33929502-33929521 None:intergenic 30.0%
!! TATCATTAATGTGGATTGGT+GGG - chr4_4:33929524-33929543 None:intergenic 30.0%
TGAGCATTCTATCATTAATG+TGG - chr4_4:33929533-33929552 None:intergenic 30.0%
GCATAATTGTTTGCATATAG+GGG - chr4_4:33929649-33929668 None:intergenic 30.0%
GGCATAATTGTTTGCATATA+GGG - chr4_4:33929650-33929669 None:intergenic 30.0%
TGGCATAATTGTTTGCATAT+AGG - chr4_4:33929651-33929670 None:intergenic 30.0%
AATCCAAAAGGAATGATAGA+AGG + chr4_4:33929681-33929700 Msa0678350:intron 30.0%
ATCCAAAAGGAATGATAGAA+GGG + chr4_4:33929682-33929701 Msa0678350:intron 30.0%
! AACATCATTGGTTACATCTT+TGG - chr4_4:33929753-33929772 None:intergenic 30.0%
! AACATCATTGGTTACATCTT+TGG - chr4_4:33929753-33929772 None:intergenic 30.0%
GGGTTCATTTATAGAATATG+TGG - chr4_4:33929833-33929852 None:intergenic 30.0%
!!! ATCACATGGTACCTTTTTTA+GGG - chr4_4:33929906-33929925 None:intergenic 30.0%
TATGCACTACATAAAGACTA+AGG + chr4_4:33930138-33930157 Msa0678350:intron 30.0%
ATGCACTACATAAAGACTAA+GGG + chr4_4:33930139-33930158 Msa0678350:intron 30.0%
!!! TATCTATTTTAGTGATGGAG+AGG - chr4_4:33930411-33930430 None:intergenic 30.0%
! TCTATTGGTTGGATTCAATT+TGG + chr4_4:33930809-33930828 Msa0678350:intron 30.0%
GGATAATAAGTTTACTAGCT+AGG + chr4_4:33930830-33930849 Msa0678350:intron 30.0%
ATTATATCTCAAGCAATGAC+TGG - chr4_4:33931025-33931044 None:intergenic 30.0%
AAAATTCTTCTGTTGGATCT+TGG - chr4_4:33931212-33931231 None:intergenic 30.0%
!! TTTAAGACATTTTTCGATGC+TGG + chr4_4:33931234-33931253 Msa0678350:CDS 30.0%
ACATATATTCACTCTGTAGA+TGG + chr4_4:33931333-33931352 Msa0678350:CDS 30.0%
AACATTGTCATAGTTTCCAA+CGG - chr4_4:33931612-33931631 None:intergenic 30.0%
AAATGTTAACAAGTGTCCTT+AGG + chr4_4:33931757-33931776 Msa0678350:intron 30.0%
!!! ATGGAACCACTTGTTTTAAA+CGG + chr4_4:33932117-33932136 Msa0678350:intron 30.0%
!! TTTTGACCGTTTAAAACAAG+TGG - chr4_4:33932126-33932145 None:intergenic 30.0%
!! TGTTTTAAACGGTCAAAAAG+AGG + chr4_4:33932128-33932147 Msa0678350:intron 30.0%
TCAAACTTACTTAAAGTGCA+AGG - chr4_4:33932517-33932536 None:intergenic 30.0%
ATCAGGTATACTGGAAATTA+AGG + chr4_4:33932578-33932597 Msa0678350:CDS 30.0%
AAGCACATTGATGAGATTAA+GGG + chr4_4:33932612-33932631 Msa0678350:CDS 30.0%
GAGATTAAGGGAGAATTATA+TGG + chr4_4:33932624-33932643 Msa0678350:CDS 30.0%
GGGAGAATTATATGGTAAAT+TGG + chr4_4:33932632-33932651 Msa0678350:CDS 30.0%
! TGTGATTTTTGCATCTGATT+CGG - chr4_4:33932832-33932851 None:intergenic 30.0%
TCAGATGCAAAAATCACAAT+TGG + chr4_4:33932834-33932853 Msa0678350:CDS 30.0%
CAGATGCAAAAATCACAATT+GGG + chr4_4:33932835-33932854 Msa0678350:CDS 30.0%
GTATTAAAATGTACGTTTGC+AGG + chr4_4:33933197-33933216 Msa0678350:intron 30.0%
GAATAGAGACATTGTAAACA+AGG + chr4_4:33933219-33933238 Msa0678350:CDS 30.0%
TAAACAAGGACATAGTAATG+TGG + chr4_4:33933233-33933252 Msa0678350:CDS 30.0%
GATGTATGTTTGTGTGGAAA+TGG - chr4_4:33927721-33927740 None:intergenic 35.0%
TAGCTTGATGTATGTTTGTG+TGG - chr4_4:33927727-33927746 None:intergenic 35.0%
TCTTTGGTTAAAGGATCAAG+TGG - chr4_4:33927868-33927887 None:intergenic 35.0%
GACAGTTAGAAACTCTTCTT+TGG - chr4_4:33927884-33927903 None:intergenic 35.0%
! AAGCTACTTTGTTCTTTGAG+GGG - chr4_4:33927933-33927952 None:intergenic 35.0%
! GAAAGCTACTTTGTTCTTTG+AGG - chr4_4:33927935-33927954 None:intergenic 35.0%
TGTTCCTCAAGAGATAACAT+AGG - chr4_4:33928144-33928163 None:intergenic 35.0%
ATGTTATCTCTTGAGGAACA+AGG + chr4_4:33928144-33928163 Msa0678350:five_prime_UTR 35.0%
TTCATTGAAGCAATGAAAGG+AGG - chr4_4:33928198-33928217 None:intergenic 35.0%
TTGGAGAAGAAGAGAGTAAA+AGG + chr4_4:33928274-33928293 Msa0678350:five_prime_UTR 35.0%
!! GCCTATTAGTGGATTAACAA+TGG + chr4_4:33928354-33928373 Msa0678350:CDS 35.0%
AGAAATTGAAGTTGTGCCTA+CGG + chr4_4:33928420-33928439 Msa0678350:CDS 35.0%
TTGATTAGACAGTCTAGATG+TGG + chr4_4:33928878-33928897 Msa0678350:intron 35.0%
AGATATTTCGTAGCTTGAAC+GGG - chr4_4:33929070-33929089 None:intergenic 35.0%
! GAGGAAATTAAAGCATCAAG+AGG + chr4_4:33929244-33929263 Msa0678350:intron 35.0%
! GAAATTAAAGCATCAAGAGG+AGG + chr4_4:33929247-33929266 Msa0678350:intron 35.0%
TAATATTGGGCAGACAGTAA+AGG - chr4_4:33929316-33929335 None:intergenic 35.0%
AGGGAGAAAATAGTTACAAG+AGG + chr4_4:33929343-33929362 Msa0678350:intron 35.0%
GGGAGAAAATAGTTACAAGA+GGG + chr4_4:33929344-33929363 Msa0678350:intron 35.0%
GGAGAAAATAGTTACAAGAG+GGG + chr4_4:33929345-33929364 Msa0678350:intron 35.0%
!! CTATCATTAATGTGGATTGG+TGG - chr4_4:33929525-33929544 None:intergenic 35.0%
! CTATCATTCCTTTTGGATTG+AGG - chr4_4:33929680-33929699 None:intergenic 35.0%
! AACCCTTCTATCATTCCTTT+TGG - chr4_4:33929687-33929706 None:intergenic 35.0%
TGGTTACATCTTTGGATAGA+AGG - chr4_4:33929745-33929764 None:intergenic 35.0%
TGGTTACATCTTTGGATAGA+AGG - chr4_4:33929745-33929764 None:intergenic 35.0%
AATATGTGGTGCAACATCAT+TGG - chr4_4:33929819-33929838 None:intergenic 35.0%
TCTTAGAAGCAGAGTTACAA+GGG - chr4_4:33929853-33929872 None:intergenic 35.0%
!!! GATCACATGGTACCTTTTTT+AGG - chr4_4:33929907-33929926 None:intergenic 35.0%
CCATTAATATAGGGATCACA+TGG - chr4_4:33929920-33929939 None:intergenic 35.0%
CCATGTGATCCCTATATTAA+TGG + chr4_4:33929917-33929936 Msa0678350:intron 35.0%
TCCTATATGAAACTTCCAGT+TGG - chr4_4:33931076-33931095 None:intergenic 35.0%
GTTAGGTATCAAAGAAACAG+TGG - chr4_4:33931280-33931299 None:intergenic 35.0%
! AAAATCTAAAGCCTACACCA+TGG + chr4_4:33931969-33931988 Msa0678350:intron 35.0%
AGAATAGTGTCCAACTAAGT+TGG - chr4_4:33932329-33932348 None:intergenic 35.0%
TCTATACAGATAGCACTATC+AGG + chr4_4:33932561-33932580 Msa0678350:intron 35.0%
CAAGCACATTGATGAGATTA+AGG + chr4_4:33932611-33932630 Msa0678350:CDS 35.0%
AAAACCGTAAGAATCACAGA+TGG + chr4_4:33932756-33932775 Msa0678350:CDS 35.0%
ACTTCCATCTGTGATTCTTA+CGG - chr4_4:33932763-33932782 None:intergenic 35.0%
GAATCAAACGATATCCGATA+TGG - chr4_4:33932917-33932936 None:intergenic 35.0%
GATGATTATCCACAAATACG+CGG + chr4_4:33932969-33932988 Msa0678350:CDS 35.0%
AATAGAACTGAAAAATGGGC+TGG + chr4_4:33933029-33933048 Msa0678350:CDS 35.0%
ATAGTAATGTGGCATGTAGT+GGG + chr4_4:33933244-33933263 Msa0678350:CDS 35.0%
TGCTCAATAGTGGCATTATT+GGG - chr4_4:33933300-33933319 None:intergenic 35.0%
! TCAAATGAAGTGCTCAATAG+TGG - chr4_4:33933310-33933329 None:intergenic 35.0%
TTCCTCTCAAAGAAATTGGT+TGG - chr4_4:33933340-33933359 None:intergenic 35.0%
AGGATTCCTCTCAAAGAAAT+TGG - chr4_4:33933344-33933363 None:intergenic 35.0%
TGATCTATTCTCACTTCTAG+CGG + chr4_4:33933459-33933478 Msa0678350:intron 35.0%
AAGCTAGTGAAGCTAGCTAT+AGG + chr4_4:33927741-33927760 Msa0678350:five_prime_UTR 40.0%
AAGCTAGCTATAGGTCACAA+TGG + chr4_4:33927750-33927769 Msa0678350:five_prime_UTR 40.0%
AAGAACAAGTTTCATAGGGG+TGG - chr4_4:33927782-33927801 None:intergenic 40.0%
AAGTGGATGTTGATGCAATG+GGG - chr4_4:33927851-33927870 None:intergenic 40.0%
CAAGTGGATGTTGATGCAAT+GGG - chr4_4:33927852-33927871 None:intergenic 40.0%
TCAAGTGGATGTTGATGCAA+TGG - chr4_4:33927853-33927872 None:intergenic 40.0%
TGTCTCTGACAATGTTCACA+AGG + chr4_4:33928107-33928126 Msa0678350:five_prime_UTR 40.0%
GTCTCTGACAATGTTCACAA+GGG + chr4_4:33928108-33928127 Msa0678350:five_prime_UTR 40.0%
GACAATGTTCACAAGGGATA+TGG + chr4_4:33928114-33928133 Msa0678350:five_prime_UTR 40.0%
! TTTTTCGTGAGGCCTATTAG+TGG + chr4_4:33928343-33928362 Msa0678350:CDS 40.0%
GGCTGAGAACACTGAATATA+AGG + chr4_4:33928441-33928460 Msa0678350:CDS 40.0%
TCAAAACAAAGCCCACCATT+TGG + chr4_4:33928466-33928485 Msa0678350:CDS 40.0%
!!! CTATGCTGTTTTGGTCCAAA+TGG - chr4_4:33928484-33928503 None:intergenic 40.0%
!! CTTGCAAGACTATGCTGTTT+TGG - chr4_4:33928493-33928512 None:intergenic 40.0%
TGATCAATGGCCATAGTGTT+AGG + chr4_4:33928539-33928558 Msa0678350:CDS 40.0%
AGGAAACCGACACCTAAAAA+TGG - chr4_4:33928606-33928625 None:intergenic 40.0%
!! TATTGATGGCGATGGATTCA+TGG + chr4_4:33928642-33928661 Msa0678350:intron 40.0%
! CACTCTAAGGACACTCTTTA+AGG - chr4_4:33928807-33928826 None:intergenic 40.0%
ATTAGCGAAGTTTGAACCTC+TGG + chr4_4:33929119-33929138 Msa0678350:intron 40.0%
! TTTTAGATGAACCAAGAGCG+AGG + chr4_4:33929225-33929244 Msa0678350:intron 40.0%
! TGCTTTAATTTCCTCGCTCT+TGG - chr4_4:33929239-33929258 None:intergenic 40.0%
! TTGTCCTGAGAGTTTAGGTT+TGG - chr4_4:33929374-33929393 None:intergenic 40.0%
! CCTTTTTGTCCTGAGAGTTT+AGG - chr4_4:33929379-33929398 None:intergenic 40.0%
CCTAAACTCTCAGGACAAAA+AGG + chr4_4:33929376-33929395 Msa0678350:intron 40.0%
TCGTGAAAGAAATGGTTGCA+TGG - chr4_4:33929601-33929620 None:intergenic 40.0%
! CTTTTGGATTGAGGAACTGT+TGG - chr4_4:33929671-33929690 None:intergenic 40.0%
CAACAGTTCCTCAATCCAAA+AGG + chr4_4:33929669-33929688 Msa0678350:intron 40.0%
!!! CATGCGTGATTTTGGCTTTT+AGG - chr4_4:33929710-33929729 None:intergenic 40.0%
CATCTTTGGATAGAAGGAGT+CGG - chr4_4:33929739-33929758 None:intergenic 40.0%
ACAATGTGGTGCAACATCAT+TGG - chr4_4:33929765-33929784 None:intergenic 40.0%
CATCTTTGGATAGAAGGAGT+CGG - chr4_4:33929739-33929758 None:intergenic 40.0%
GTCTTAGAAGCAGAGTTACA+AGG - chr4_4:33929854-33929873 None:intergenic 40.0%
!! TGTAACTCTGCTTCTAAGAC+TGG + chr4_4:33929854-33929873 Msa0678350:intron 40.0%
!! GTAACTCTGCTTCTAAGACT+GGG + chr4_4:33929855-33929874 Msa0678350:intron 40.0%
GCCAACTGGAAGTTTCATAT+AGG + chr4_4:33931072-33931091 Msa0678350:CDS 40.0%
ATAGGATTTGATGTACGAGC+TGG + chr4_4:33931090-33931109 Msa0678350:CDS 40.0%
TCTTCTGTTGGATCTTGGTA+TGG - chr4_4:33931207-33931226 None:intergenic 40.0%
!! TTTTTCGATGCTGGAGAGTA+TGG + chr4_4:33931243-33931262 Msa0678350:CDS 40.0%
GTATCAATGAAATGAGCGTG+TGG - chr4_4:33931315-33931334 None:intergenic 40.0%
CACAAATCGCATTCTTCAAG+AGG - chr4_4:33931368-33931387 None:intergenic 40.0%
ATAGTTTCCAACGGTGACTA+CGG - chr4_4:33931603-33931622 None:intergenic 40.0%
GATTGGGAGTTCAAAACAAG+TGG + chr4_4:33931635-33931654 Msa0678350:CDS 40.0%
TTCACAAAAAGAGGGCTTGA+TGG + chr4_4:33932098-33932117 Msa0678350:intron 40.0%
TGTCCTTAGGACACAAGTTA+AGG - chr4_4:33932454-33932473 None:intergenic 40.0%
! TCATGCTAACTTGTGTCCTT+AGG - chr4_4:33932467-33932486 None:intergenic 40.0%
AGGACACAAGTTAGCATGAT+CGG + chr4_4:33932468-33932487 Msa0678350:intron 40.0%
GATAGCACTATCAGGTATAC+TGG + chr4_4:33932569-33932588 Msa0678350:intron 40.0%
TTGGTATCAGCAAACAGCAT+TGG + chr4_4:33932651-33932670 Msa0678350:CDS 40.0%
! TTAATCACGACTAGTTCAGC+TGG - chr4_4:33932867-33932886 None:intergenic 40.0%
TCGAACAAAAAAACTGCGGT+TGG + chr4_4:33932888-33932907 Msa0678350:CDS 40.0%
CTCTATGTTGATCATAGTCG+CGG + chr4_4:33933056-33933075 Msa0678350:CDS 40.0%
GAGATGACACTTTAGCTGTT+TGG + chr4_4:33933078-33933097 Msa0678350:CDS 40.0%
CATAGTAATGTGGCATGTAG+TGG + chr4_4:33933243-33933262 Msa0678350:CDS 40.0%
AATTCATCATGTTCCAGCAC+AGG + chr4_4:33933267-33933286 Msa0678350:CDS 40.0%
GTGCTCAATAGTGGCATTAT+TGG - chr4_4:33933301-33933320 None:intergenic 40.0%
!! CTCTAGGAGAAAGGGTTTTA+AGG - chr4_4:33933369-33933388 None:intergenic 40.0%
! TGCAACATCTCTAGGAGAAA+GGG - chr4_4:33933377-33933396 None:intergenic 40.0%
! ATGCAACATCTCTAGGAGAA+AGG - chr4_4:33933378-33933397 None:intergenic 40.0%
TTTCTCCTAGAGATGTTGCA+TGG + chr4_4:33933377-33933396 Msa0678350:CDS 40.0%
!! TAGTTTTACTTGGGACAACC+AGG - chr4_4:33933403-33933422 None:intergenic 40.0%
CTTGCATTCATCATGCCTAT+CGG + chr4_4:33933430-33933449 Msa0678350:three_prime_UTR 40.0%
! GCTTTCCACTATATTGGCCT+AGG + chr4_4:33927949-33927968 Msa0678350:five_prime_UTR 45.0%
TTCTTCTCCAAACCATCCCA+TGG - chr4_4:33928265-33928284 None:intergenic 45.0%
TATTCAGTGTTCTCAGCCGT+AGG - chr4_4:33928439-33928458 None:intergenic 45.0%
!!! GCTGTTTTGGTCCAAATGGT+GGG - chr4_4:33928480-33928499 None:intergenic 45.0%
!!! TGCTGTTTTGGTCCAAATGG+TGG - chr4_4:33928481-33928500 None:intergenic 45.0%
CTTGCAAGTCATCAACCTCA+TGG + chr4_4:33928505-33928524 Msa0678350:CDS 45.0%
! GGCGATGGATTCATGGTATT+TGG + chr4_4:33928649-33928668 Msa0678350:intron 45.0%
! TAAAGGATGGAGGCTGGTTA+GGG - chr4_4:33929299-33929318 None:intergenic 45.0%
ATTGGGCAGACAGTAAAGGA+TGG - chr4_4:33929312-33929331 None:intergenic 45.0%
GAGACCAAACCTAAACTCTC+AGG + chr4_4:33929367-33929386 Msa0678350:intron 45.0%
! GGACTCAACATGCGTGATTT+TGG - chr4_4:33929718-33929737 None:intergenic 45.0%
GGGTGTGTTGCAGGTAATTT+GGG - chr4_4:33929886-33929905 None:intergenic 45.0%
AGGGTGTGTTGCAGGTAATT+TGG - chr4_4:33929887-33929906 None:intergenic 45.0%
!!! CCTTTTTTAGGGTGTGTTGC+AGG - chr4_4:33929895-33929914 None:intergenic 45.0%
CCTGCAACACACCCTAAAAA+AGG + chr4_4:33929892-33929911 Msa0678350:intron 45.0%
! AGTGATGGAGAGGAATGCTT+GGG - chr4_4:33930401-33930420 None:intergenic 45.0%
! TAGTGATGGAGAGGAATGCT+TGG - chr4_4:33930402-33930421 None:intergenic 45.0%
GTTTATTCAGTTGGGCCAAC+TGG + chr4_4:33931058-33931077 Msa0678350:intron 45.0%
! GATGCTGGAGAGTATGGATT+TGG + chr4_4:33931249-33931268 Msa0678350:CDS 45.0%
TCAATGAAATGAGCGTGTGG+TGG - chr4_4:33931312-33931331 None:intergenic 45.0%
AATACTTACCGAGGGCTTGA+TGG - chr4_4:33931663-33931682 None:intergenic 45.0%
GACTAGGGTTCCAACTTAGT+TGG + chr4_4:33932316-33932335 Msa0678350:intron 45.0%
!! GCTCCTTAACTTGTGTCCTA+AGG + chr4_4:33932448-33932467 Msa0678350:intron 45.0%
AAGTGCAAGGACATGCAAGT+GGG - chr4_4:33932504-33932523 None:intergenic 45.0%
AAAGTGCAAGGACATGCAAG+TGG - chr4_4:33932505-33932524 None:intergenic 45.0%
ACTGCGGTTGGAAACCATAT+CGG + chr4_4:33932900-33932919 Msa0678350:CDS 45.0%
AGTGAATGAGCAGGAATTGC+TGG - chr4_4:33932939-33932958 None:intergenic 45.0%
TCGGTTAGAAGTGAATGAGC+AGG - chr4_4:33932948-33932967 None:intergenic 45.0%
GTAAATGCACCGCGTATTTG+TGG - chr4_4:33932981-33933000 None:intergenic 45.0%
TGAGCACTTCATTTGAGCTC+AGG + chr4_4:33933314-33933333 Msa0678350:CDS 45.0%
GGCCAACCAATTTCTTTGAG+AGG + chr4_4:33933335-33933354 Msa0678350:CDS 45.0%
!!! GGAGAAAGGGTTTTAAGGAC+AGG - chr4_4:33933364-33933383 None:intergenic 45.0%
CATTCATCATGCCTATCGGA+CGG + chr4_4:33933434-33933453 Msa0678350:three_prime_UTR 45.0%
AATAGATCAGACCGTCCGAT+AGG - chr4_4:33933448-33933467 None:intergenic 45.0%
!!! ATATTTTAAAGTTAAAAATA+AGG - chr4_4:33928831-33928850 None:intergenic 5.0%
!! AAAATTATATTTAAATCTAA+GGG - chr4_4:33929971-33929990 None:intergenic 5.0%
!! AAAAATTATATTTAAATCTA+AGG - chr4_4:33929972-33929991 None:intergenic 5.0%
!!! ACTTTTAAATATATATAAAT+AGG - chr4_4:33930561-33930580 None:intergenic 5.0%
!! AGTTTAATAAAATAAATTTA+CGG + chr4_4:33930578-33930597 Msa0678350:intron 5.0%
!!! ACTTTTAAATATATATAAAT+AGG - chr4_4:33930561-33930580 None:intergenic 5.0%
!! ATTAATTATTAAATTAAGTT+TGG - chr4_4:33931472-33931491 None:intergenic 5.0%
ACTCCTCTACTTCCAAGCAG+TGG + chr4_4:33927816-33927835 Msa0678350:five_prime_UTR 50.0%
AGACCACTGCTTGGAAGTAG+AGG - chr4_4:33927822-33927841 None:intergenic 50.0%
GGTCACCTAGGCCAATATAG+TGG - chr4_4:33927957-33927976 None:intergenic 50.0%
AATCTTTGTCGGGGTCACCT+AGG - chr4_4:33927969-33927988 None:intergenic 50.0%
AGTGTGTGCTCCATTCTCCA+TGG + chr4_4:33928245-33928264 Msa0678350:five_prime_UTR 50.0%
GTGTGTGCTCCATTCTCCAT+GGG + chr4_4:33928246-33928265 Msa0678350:five_prime_UTR 50.0%
CCAAACCATCCCATGGAGAA+TGG - chr4_4:33928258-33928277 None:intergenic 50.0%
CCATTCTCCATGGGATGGTT+TGG + chr4_4:33928255-33928274 Msa0678350:five_prime_UTR 50.0%
AGTCATCAACCTCATGGTCC+TGG + chr4_4:33928511-33928530 Msa0678350:CDS 50.0%
ATCAAGAAGCCAGGACCATG+AGG - chr4_4:33928523-33928542 None:intergenic 50.0%
GGTCCTGGCTTCTTGATCAA+TGG + chr4_4:33928526-33928545 Msa0678350:CDS 50.0%
TGGCCATTGATCAAGAAGCC+AGG - chr4_4:33928532-33928551 None:intergenic 50.0%
AGTTTGAACCTCTGGTCCCA+AGG + chr4_4:33929127-33929146 Msa0678350:intron 50.0%
AAGATAAGCCTTGGGACCAG+AGG - chr4_4:33929138-33929157 None:intergenic 50.0%
! GTAAAGGATGGAGGCTGGTT+AGG - chr4_4:33929300-33929319 None:intergenic 50.0%
AGACAGTAAAGGATGGAGGC+TGG - chr4_4:33929305-33929324 None:intergenic 50.0%
AGGAGTCGGACTCAACAATG+TGG - chr4_4:33929779-33929798 None:intergenic 50.0%
!! CTCTGCTTCTAAGACTGGGA+AGG + chr4_4:33929859-33929878 Msa0678350:intron 50.0%
!! TGTGGTGGACAATCACGGTT+AGG - chr4_4:33931297-33931316 None:intergenic 50.0%
ATCGCATTCTTCAAGAGGCG+TGG - chr4_4:33931363-33931382 None:intergenic 50.0%
GTTTGAACCGTAGTCACCGT+TGG + chr4_4:33931593-33931612 Msa0678350:intron 50.0%
AAGTGGTTCCATCAAGCCCT+CGG + chr4_4:33931652-33931671 Msa0678350:CDS 50.0%
TACACCATGGCAATTCGCGT+GGG + chr4_4:33931982-33932001 Msa0678350:intron 50.0%
TTAACCCACGCGAATTGCCA+TGG - chr4_4:33931989-33932008 None:intergenic 50.0%
CATACGTAACGACACGACAG+AGG - chr4_4:33932166-33932185 None:intergenic 50.0%
ATTGGGAAGTCTTCCTGTGC+TGG - chr4_4:33933283-33933302 None:intergenic 50.0%
GGGTTACAGAGACCACTGCT+TGG - chr4_4:33927831-33927850 None:intergenic 55.0%
GTGCTCCATTCTCCATGGGA+TGG + chr4_4:33928250-33928269 Msa0678350:five_prime_UTR 55.0%
GGGCAGACAGTAAAGGATGG+AGG - chr4_4:33929309-33929328 None:intergenic 55.0%
!! GAGCGTGTGGTGGACAATCA+CGG - chr4_4:33931302-33931321 None:intergenic 55.0%
CACGCGAATTGCCATGGTGT+AGG - chr4_4:33931983-33932002 None:intergenic 55.0%
CTACACCATGGCAATTCGCG+TGG + chr4_4:33931981-33932000 Msa0678350:intron 55.0%
CCAGGCCATGCAACATCTCT+AGG - chr4_4:33933385-33933404 None:intergenic 55.0%
CCTAGAGATGTTGCATGGCC+TGG + chr4_4:33933382-33933401 Msa0678350:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 33927701 33933513 33927701 ID=Msa0678350;Name=Msa0678350
chr4_4 mRNA 33927701 33933513 33927701 ID=Msa0678350-mRNA-1;Parent=Msa0678350;Name=Msa0678350-mRNA-1;_AED=0.15;_eAED=0.15;_QI=621|0.6|0.5|1|0.8|0.66|6|66|462
chr4_4 exon 33927701 33928560 33927701 ID=Msa0678350-mRNA-1:exon:8178;Parent=Msa0678350-mRNA-1
chr4_4 exon 33931068 33931402 33931068 ID=Msa0678350-mRNA-1:exon:8179;Parent=Msa0678350-mRNA-1
chr4_4 exon 33931606 33931673 33931606 ID=Msa0678350-mRNA-1:exon:8180;Parent=Msa0678350-mRNA-1
chr4_4 exon 33932570 33933117 33932570 ID=Msa0678350-mRNA-1:exon:8181;Parent=Msa0678350-mRNA-1
chr4_4 exon 33933219 33933455 33933219 ID=Msa0678350-mRNA-1:exon:8182;Parent=Msa0678350-mRNA-1
chr4_4 exon 33933486 33933513 33933486 ID=Msa0678350-mRNA-1:exon:8183;Parent=Msa0678350-mRNA-1
chr4_4 five_prime_UTR 33927701 33928321 33927701 ID=Msa0678350-mRNA-1:five_prime_utr;Parent=Msa0678350-mRNA-1
chr4_4 CDS 33928322 33928560 33928322 ID=Msa0678350-mRNA-1:cds;Parent=Msa0678350-mRNA-1
chr4_4 CDS 33931068 33931402 33931068 ID=Msa0678350-mRNA-1:cds;Parent=Msa0678350-mRNA-1
chr4_4 CDS 33931606 33931673 33931606 ID=Msa0678350-mRNA-1:cds;Parent=Msa0678350-mRNA-1
chr4_4 CDS 33932570 33933117 33932570 ID=Msa0678350-mRNA-1:cds;Parent=Msa0678350-mRNA-1
chr4_4 CDS 33933219 33933417 33933219 ID=Msa0678350-mRNA-1:cds;Parent=Msa0678350-mRNA-1
chr4_4 three_prime_UTR 33933418 33933455 33933418 ID=Msa0678350-mRNA-1:three_prime_utr;Parent=Msa0678350-mRNA-1
chr4_4 three_prime_UTR 33933486 33933513 33933486 ID=Msa0678350-mRNA-1:three_prime_utr;Parent=Msa0678350-mRNA-1
Gene Sequence

>Msa0678350

ATGAAAGAAAACACTGTTAATTTTTTCGTGAGGCCTATTAGTGGATTAACAATGGTTGCTGATCTTGAACTCATGAAAATTGTTAAATATCATGATAGAGAAATTGAAGTTGTGCCTACGGCTGAGAACACTGAATATAAGGCTTCAAAACAAAGCCCACCATTTGGACCAAAACAGCATAGTCTTGCAAGTCATCAACCTCATGGTCCTGGCTTCTTGATCAATGGCCATAGTGTTAGTTGGGCCAACTGGAAGTTTCATATAGGATTTGATGTACGAGCTGGCATTGTAATATCACTTGCATCTATTTATGATCTTGAAAAGCACAAATTTCGTAGAGTATTATACAAAGGGTATATTTCTGAGATTTTTGTGCCATACCAAGATCCAACAGAAGAATTTTACTTTAAGACATTTTTCGATGCTGGAGAGTATGGATTTGGTCGATCCACTGTTTCTTTGATACCTAACCGTGATTGTCCACCACACGCTCATTTCATTGATACATATATTCACTCTGTAGATGGTACACCACGCCTCTTGAAGAATGCGATTTGTGTTTTTGAACAATATGTCACCGTTGGAAACTATGACAATGTTTTAGATTGGGAGTTCAAAACAAGTGGTTCCATCAAGCCCTCGATAGCACTATCAGGTATACTGGAAATTAAGGCAACAAACATCAAGCACATTGATGAGATTAAGGGAGAATTATATGGTAAATTGGTATCAGCAAACAGCATTGGAATTTACCATGACCATTTCTACATTTACTATCTTGATTTTGATATCGACGGTGCAGAAAACTCGTTTGAGAAAACAAGTTTAAAAACCGTAAGAATCACAGATGGAAGTTCAAAAAGAAAGAGTTATTGGACAACTGAGACTCAAACTGCTAAGACCGAATCAGATGCAAAAATCACAATTGGGTCTGCTCCAGCTGAACTAGTCGTGATTAATTCGAACAAAAAAACTGCGGTTGGAAACCATATCGGATATCGTTTGATTCCAGCAATTCCTGCTCATTCACTTCTAACCGAAGATGATTATCCACAAATACGCGGTGCATTTACCAATTATAATGTTTGGATCACACCATATAATAGAACTGAAAAATGGGCTGGTGAACTCTATGTTGATCATAGTCGCGGAGATGACACTTTAGCTGTTTGGACAAACAGTAAGATGAAGAATAGAGACATTGTAAACAAGGACATAGTAATGTGGCATGTAGTGGGAATTCATCATGTTCCAGCACAGGAAGACTTCCCAATAATGCCACTATTGAGCACTTCATTTGAGCTCAGGCCAACCAATTTCTTTGAGAGGAATCCTGTCCTTAAAACCCTTTCTCCTAGAGATGTTGCATGGCCTGGTTGTCCCAAGTAA
Protein sequence

>Msa0678350

MKENTVNFFVRPISGLTMVADLELMKIVKYHDREIEVVPTAENTEYKASKQSPPFGPKQHSLASHQPHGPGFLINGHSVSWANWKFHIGFDVRAGIVISLASIYDLEKHKFRRVLYKGYISEIFVPYQDPTEEFYFKTFFDAGEYGFGRSTVSLIPNRDCPPHAHFIDTYIHSVDGTPRLLKNAICVFEQYVTVGNYDNVLDWEFKTSGSIKPSIALSGILEIKATNIKHIDEIKGELYGKLVSANSIGIYHDHFYIYYLDFDIDGAENSFEKTSLKTVRITDGSSKRKSYWTTETQTAKTESDAKITIGSAPAELVVINSNKKTAVGNHIGYRLIPAIPAHSLLTEDDYPQIRGAFTNYNVWITPYNRTEKWAGELYVDHSRGDDTLAVWTNSKMKNRDIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRDVAWPGCPK*