AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1269370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1269370 MtrunA17_Chr4g0000321 89.247 279 22 3 1 278 1 272 3.19e-178 491
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1269370 AT2G46910.1 70.356 253 68 3 32 277 30 282 3.36e-123 353

Find 82 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATATTATCTGAGTTATT+TGG 0.204203 8_3:+2527253 Msa1269370:CDS
TTTGGATGATAATATGCTTT+TGG 0.254717 8_3:+2527271 Msa1269370:CDS
TCCAACTTGTTAAAATCAAT+TGG 0.289643 8_3:-2524648 None:intergenic
GGAATTACCTCAAACAAATT+AGG 0.299344 8_3:-2524938 None:intergenic
ATAATGTGTTCTTTAATTGC+TGG 0.306537 8_3:-2527653 None:intergenic
GAAACTGAAGGTAAATATTT+CGG 0.318032 8_3:-2526316 None:intergenic
ATAAGCCGTGGTTGAGGAAT+TGG 0.329110 8_3:+2527412 Msa1269370:three_prime_UTR
GGAATTCTCATCATTGTATA+AGG 0.343085 8_3:+2527479 Msa1269370:three_prime_UTR
TCTACAGTTACAATGTTAAT+AGG 0.350096 8_3:+2524248 Msa1269370:CDS
AGAGTCCTCTTTGTGTGTCT+TGG 0.357425 8_3:-2524465 None:intergenic
AAAGATCGTGGTAGTATTGC+TGG 0.362518 8_3:-2526826 None:intergenic
CAATTTCCCGTGAGGGATCC+TGG 0.375960 8_3:+2527129 Msa1269370:CDS
TTGAGTTGGAGAAATGGATT+TGG 0.379150 8_3:+2524153 Msa1269370:exon
CACCACTATGCATTAATAAT+AGG 0.383426 8_3:+2524212 Msa1269370:CDS
GGCCGTGCTGTTGGTGGAGG+AGG 0.385119 8_3:+2527293 Msa1269370:CDS
TAAGCTTCTCGTTCCTTCTC+TGG 0.389022 8_3:-2524121 None:intergenic
CATTGTAACTGTAGAGTGTA+TGG 0.400357 8_3:-2524240 None:intergenic
GAGAATTCCTTGTGGACTAT+AGG 0.403316 8_3:-2527465 None:intergenic
CCATCATATATATACCTTCC+AGG 0.410693 8_3:-2527147 None:intergenic
TTGGGCCGTGCTGTTGGTGG+AGG 0.425794 8_3:+2527290 Msa1269370:CDS
GCTTAGCTTGGCAGTTGAGT+TGG 0.428513 8_3:+2524139 Msa1269370:five_prime_UTR
GAGCATTCCTAATTTGTTTG+AGG 0.430425 8_3:+2524931 Msa1269370:CDS
TGGAAGAGAATGAGAACATC+AGG 0.437458 8_3:-2524702 None:intergenic
TGGCAGTTGAGTTGGAGAAA+TGG 0.444921 8_3:+2524147 Msa1269370:exon
TCTTCAACGTTCTTCTATTG+AGG 0.448829 8_3:+2524498 Msa1269370:CDS
CCAACTTGTTAAAATCAATT+GGG 0.453481 8_3:-2524647 None:intergenic
TTAACAAGTTGGATGGAACT+TGG 0.462758 8_3:+2524658 Msa1269370:CDS
ATAAGGCAATAATATGCTAT+TGG 0.468591 8_3:+2527496 Msa1269370:three_prime_UTR
CTCCTATTATTAATGCATAG+TGG 0.475506 8_3:-2524214 None:intergenic
GACCGATACAAGAGTGAACT+TGG 0.486559 8_3:-2526294 None:intergenic
CACTCGATAAGCCGTGGTTG+AGG 0.492755 8_3:+2527406 Msa1269370:three_prime_UTR
GGATACAGTACTTGAAAGAA+AGG 0.499312 8_3:-2524741 None:intergenic
AGATTGCATAGCCATGGAAA+TGG 0.503286 8_3:-2524284 None:intergenic
CAAAGAACGCCGCGAGCGTA+AGG 0.505693 8_3:+2524092 Msa1269370:five_prime_UTR
TGGTTGAGGAATTGGACATA+TGG 0.507094 8_3:+2527420 Msa1269370:three_prime_UTR
TTATTCGCAATGTTGTCCGC+TGG 0.516151 8_3:+2524909 Msa1269370:CDS
CAAAGCTCAATTTCCCGTGA+GGG 0.519679 8_3:+2527122 Msa1269370:CDS
AAATATTAGTGAACAACTGC+AGG 0.525549 8_3:+2526792 Msa1269370:CDS
TATGCAATCTGCTGTTACCC+AGG 0.526237 8_3:+2524297 Msa1269370:CDS
ATTGCGAATAACACCTCCAT+TGG 0.531951 8_3:-2524897 None:intergenic
AAGGAAGATTAGCAGCAGCT+TGG 0.532811 8_3:-2524722 None:intergenic
CACCTCCATTGGAGCTATCA+CGG 0.533190 8_3:-2524886 None:intergenic
TGCCAAGTTCACTCTTGTAT+CGG 0.542599 8_3:+2526292 Msa1269370:CDS
ATGGAGAGGAAGAAATAGAC+TGG 0.545081 8_3:+2527439 Msa1269370:three_prime_UTR
GGAACAAGAAGGTGCTACAT+TGG 0.551537 8_3:+2526262 Msa1269370:intron
GAAATCAAAATCCATTTCCA+TGG 0.552738 8_3:+2524273 Msa1269370:CDS
AACAGCAGATTGCATAGCCA+TGG 0.553271 8_3:-2524290 None:intergenic
CGTAAGGAGTGTACCAGAGA+AGG 0.555677 8_3:+2524108 Msa1269370:five_prime_UTR
TCATCAATGTCAGGTGAATG+TGG 0.559421 8_3:+2524605 Msa1269370:intron
TACCTTCCAGGATCCCTCAC+GGG 0.569268 8_3:-2527135 None:intergenic
TTGGATTGTAGGGAATCAGT+AGG 0.573551 8_3:+2527227 Msa1269370:intron
GATTGTAGGGAATCAGTAGG+AGG 0.575346 8_3:+2527230 Msa1269370:intron
CAATGTCAGGTGAATGTGGA+AGG 0.576041 8_3:+2524609 Msa1269370:intron
GAATGCCGTGATAGCTCCAA+TGG 0.576112 8_3:+2524881 Msa1269370:CDS
GTCAGGTGAATGTGGAAGGA+AGG 0.576429 8_3:+2524613 Msa1269370:intron
AAGGAACGAGAAGCTTAGCT+TGG 0.578059 8_3:+2524127 Msa1269370:five_prime_UTR
ACAGTTACAATGTTAATAGG+AGG 0.583678 8_3:+2524251 Msa1269370:CDS
GAAATTGAGCTTTGAAAGCA+CGG 0.585966 8_3:-2527113 None:intergenic
GAATGTGGAAGGAAGGAACA+TGG 0.586118 8_3:+2524620 Msa1269370:CDS
TCAATAGAAGAACGTTGAAG+AGG 0.588804 8_3:-2524496 None:intergenic
TGATTACCTCTTGAAACTGA+AGG 0.594547 8_3:-2526328 None:intergenic
TATTTACCTTCAGTTTCAAG+AGG 0.595839 8_3:+2526322 Msa1269370:CDS
ATTATTTGAGCTGTGAATTG+TGG 0.600446 8_3:+2527671 Msa1269370:three_prime_UTR
TTCCCGTGAGGGATCCTGGA+AGG 0.606634 8_3:+2527133 Msa1269370:CDS
CTGGAGGCCTATAGTCCACA+AGG 0.607285 8_3:+2527458 Msa1269370:three_prime_UTR
ATACCTTCCAGGATCCCTCA+CGG 0.609419 8_3:-2527136 None:intergenic
TTATTAATGCATAGTGGTGG+TGG 0.610336 8_3:-2524208 None:intergenic
ACAAATTAGGAATGCTCCAG+CGG 0.613575 8_3:-2524925 None:intergenic
TCTCTCCAAGACACACAAAG+AGG 0.636026 8_3:+2524460 Msa1269370:CDS
TGCAAACTTATAAAAGATCG+TGG 0.636201 8_3:-2526838 None:intergenic
TCAAAGCTCAATTTCCCGTG+AGG 0.649088 8_3:+2527121 Msa1269370:CDS
TGGTACACTCCTTACGCTCG+CGG 0.649440 8_3:-2524101 None:intergenic
GAGGAATTGGACATATGGAG+AGG 0.653797 8_3:+2527425 Msa1269370:three_prime_UTR
CTATTATTAATGCATAGTGG+TGG 0.657145 8_3:-2524211 None:intergenic
AATGTGGAAGGAAGGAACAT+GGG 0.663999 8_3:+2524621 Msa1269370:CDS
CTCCTCCTCCACCAACAGCA+CGG 0.664017 8_3:-2527295 None:intergenic
CAGTAACACTCGATAAGCCG+TGG 0.675508 8_3:+2527400 Msa1269370:three_prime_UTR
TATGTCCAATTCCTCAACCA+CGG 0.683624 8_3:-2527417 None:intergenic
ACATTGGTGCAGGAACAAGA+AGG 0.688213 8_3:+2526251 Msa1269370:intron
ACAATGATGAGAATTCCTTG+TGG 0.696408 8_3:-2527473 None:intergenic
GAGAGGAAGAAATAGACTGG+AGG 0.707122 8_3:+2527442 Msa1269370:three_prime_UTR
TGCCGTGATAGCTCCAATGG+AGG 0.729113 8_3:+2524884 Msa1269370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAACATGTAAAAAAA+TGG + chr8_3:2526038-2526057 Msa1269370:intron 10.0%
!! ATATAATAAAATATGGAAAT+GGG - chr8_3:2526530-2526549 None:intergenic 10.0%
!! AAGAAAGTGAAAAATAAAAA+TGG - chr8_3:2524818-2524837 None:intergenic 15.0%
!! AATTATATGTTGCAAAATAT+CGG - chr8_3:2526413-2526432 None:intergenic 15.0%
!!! TTCTCTTGTTATTAATTAAA+AGG + chr8_3:2526437-2526456 Msa1269370:intron 15.0%
!! TATAATAAAATATGGAAATG+GGG - chr8_3:2526529-2526548 None:intergenic 15.0%
!! CATATAATAAAATATGGAAA+TGG - chr8_3:2526531-2526550 None:intergenic 15.0%
!!! CATTTCCATATTTTATTATA+TGG + chr8_3:2526529-2526548 Msa1269370:intron 15.0%
!! GTAAACCATATAATAAAATA+TGG - chr8_3:2526537-2526556 None:intergenic 15.0%
!! ATTATATTATCTGAGTTATT+TGG + chr8_3:2527253-2527272 Msa1269370:CDS 15.0%
!! AATAAATAAAAACTGTGTGA+TGG + chr8_3:2524069-2524088 Msa1269370:five_prime_UTR 20.0%
!! GTATGTATGTATAATTAGAA+TGG - chr8_3:2524336-2524355 None:intergenic 20.0%
!! AGTAAGAAAGTAAAAAGTAA+AGG - chr8_3:2524962-2524981 None:intergenic 20.0%
!!! TTTCACAGTTTTTATCTTAA+AGG + chr8_3:2525391-2525410 Msa1269370:intron 20.0%
!!! TTCACAGTTTTTATCTTAAA+GGG + chr8_3:2525392-2525411 Msa1269370:intron 20.0%
!! AAATAGTATCATTACTCAAA+AGG + chr8_3:2525439-2525458 Msa1269370:intron 20.0%
!!! CTTGTTATTAATTAAAAGGT+TGG + chr8_3:2526441-2526460 Msa1269370:intron 20.0%
!!! TTTTCTTAATCTTAATGATG+GGG - chr8_3:2526656-2526675 None:intergenic 20.0%
!!! CTTTTCTTAATCTTAATGAT+GGG - chr8_3:2526657-2526676 None:intergenic 20.0%
!! GAATTAATTAGTGTCTTTAT+TGG + chr8_3:2527181-2527200 Msa1269370:intron 20.0%
!!! AATTCATTTTATTTGAAGCT+TGG + chr8_3:2527719-2527738 Msa1269370:three_prime_UTR 20.0%
! TCTACAGTTACAATGTTAAT+AGG + chr8_3:2524248-2524267 Msa1269370:CDS 25.0%
! ACATACATACATAGATAGAT+TGG + chr8_3:2524350-2524369 Msa1269370:intron 25.0%
! CATACATACATAGATAGATT+GGG + chr8_3:2524351-2524370 Msa1269370:intron 25.0%
!!! CATTCATCATTTGATTTTGA+AGG + chr8_3:2524393-2524412 Msa1269370:intron 25.0%
!!! CCAACTTGTTAAAATCAATT+GGG - chr8_3:2524650-2524669 None:intergenic 25.0%
!!! TCCAACTTGTTAAAATCAAT+TGG - chr8_3:2524651-2524670 None:intergenic 25.0%
!!! ATTGATTTTAACAAGTTGGA+TGG + chr8_3:2524651-2524670 Msa1269370:CDS 25.0%
! AAATGGTAAGAAAGAAAAGA+GGG - chr8_3:2524801-2524820 None:intergenic 25.0%
! AAAATGGTAAGAAAGAAAAG+AGG - chr8_3:2524802-2524821 None:intergenic 25.0%
! AAGAATGATCATAGTTATCT+GGG - chr8_3:2525023-2525042 None:intergenic 25.0%
! TAAGAATGATCATAGTTATC+TGG - chr8_3:2525024-2525043 None:intergenic 25.0%
! GAATAATCAAGTATGAATAG+AGG - chr8_3:2525107-2525126 None:intergenic 25.0%
! TATATAAGTATACTTCATCC+TGG + chr8_3:2525254-2525273 Msa1269370:intron 25.0%
!!! AATCTAGTTCCTTTTATTCT+AGG + chr8_3:2525474-2525493 Msa1269370:intron 25.0%
! AATAATATTCCACTTCTCAA+AGG - chr8_3:2525600-2525619 None:intergenic 25.0%
! GAATATTATTAAGCACTAGA+GGG + chr8_3:2525610-2525629 Msa1269370:intron 25.0%
! TTAGCTCATTAATATCTTCT+AGG + chr8_3:2525770-2525789 Msa1269370:intron 25.0%
!! TAATATCTTCTAGGAGAATT+CGG + chr8_3:2525779-2525798 Msa1269370:intron 25.0%
! ATATCTAAATGTTCTCAAGA+TGG - chr8_3:2525987-2526006 None:intergenic 25.0%
! ACTTAAGCTTAATTAGTTCA+GGG - chr8_3:2526187-2526206 None:intergenic 25.0%
! GAAACTGAAGGTAAATATTT+CGG - chr8_3:2526319-2526338 None:intergenic 25.0%
!! GCATGAACATTTTATTACTT+TGG + chr8_3:2526360-2526379 Msa1269370:intron 25.0%
!! AATCTGATTTGTCATTATGA+TGG + chr8_3:2526610-2526629 Msa1269370:intron 25.0%
!! CCTTTTCTTAATCTTAATGA+TGG - chr8_3:2526658-2526677 None:intergenic 25.0%
! CCATCATTAAGATTAAGAAA+AGG + chr8_3:2526655-2526674 Msa1269370:intron 25.0%
! ACAAATGAGCAATTTATAAC+TGG + chr8_3:2526749-2526768 Msa1269370:intron 25.0%
! AAATGCAACAGATTAAACTA+CGG - chr8_3:2526874-2526893 None:intergenic 25.0%
! TCATAAGTTATTAGTGTCAA+TGG - chr8_3:2526939-2526958 None:intergenic 25.0%
!! TTTGGTGATATATTTGTGAA+CGG + chr8_3:2526984-2527003 Msa1269370:intron 25.0%
!! TTTGGATGATAATATGCTTT+TGG + chr8_3:2527271-2527290 Msa1269370:CDS 25.0%
!! TTGGATGATAATATGCTTTT+GGG + chr8_3:2527272-2527291 Msa1269370:CDS 25.0%
! ATAAGGCAATAATATGCTAT+TGG + chr8_3:2527496-2527515 Msa1269370:three_prime_UTR 25.0%
!!! TATTTGAACTTGCTACTTTT+TGG + chr8_3:2527527-2527546 Msa1269370:three_prime_UTR 25.0%
! ATAATGTGTTCTTTAATTGC+TGG - chr8_3:2527656-2527675 None:intergenic 25.0%
CTATTATTAATGCATAGTGG+TGG - chr8_3:2524214-2524233 None:intergenic 30.0%
CACCACTATGCATTAATAAT+AGG + chr8_3:2524212-2524231 Msa1269370:CDS 30.0%
CTCCTATTATTAATGCATAG+TGG - chr8_3:2524217-2524236 None:intergenic 30.0%
ACAGTTACAATGTTAATAGG+AGG + chr8_3:2524251-2524270 Msa1269370:CDS 30.0%
GAAATCAAAATCCATTTCCA+TGG + chr8_3:2524273-2524292 Msa1269370:CDS 30.0%
ATCAATCAATCATCAATGTC+AGG + chr8_3:2524596-2524615 Msa1269370:intron 30.0%
!! CCCAATTGATTTTAACAAGT+TGG + chr8_3:2524647-2524666 Msa1269370:CDS 30.0%
AAAGAAAAGAGGGAAAATGA+TGG - chr8_3:2524791-2524810 None:intergenic 30.0%
GGAATTACCTCAAACAAATT+AGG - chr8_3:2524941-2524960 None:intergenic 30.0%
AGAATGATCATAGTTATCTG+GGG - chr8_3:2525022-2525041 None:intergenic 30.0%
ATAATATTGCGGAAATTGAG+GGG - chr8_3:2525068-2525087 None:intergenic 30.0%
CATAATATTGCGGAAATTGA+GGG - chr8_3:2525069-2525088 None:intergenic 30.0%
CTAAACTGTGCATAATATTG+CGG - chr8_3:2525079-2525098 None:intergenic 30.0%
!!! TTGCTAGGATTTGGTTTTTT+AGG + chr8_3:2525213-2525232 Msa1269370:intron 30.0%
AGTTGTGTAAATTAAAGACC+CGG + chr8_3:2525346-2525365 Msa1269370:intron 30.0%
!! TTAGTTTTTCCAACCATCTA+AGG - chr8_3:2525538-2525557 None:intergenic 30.0%
GATGGTTGGAAAAACTAAAT+TGG + chr8_3:2525540-2525559 Msa1269370:intron 30.0%
GGATGAAATACTTATTCTTG+AGG + chr8_3:2525561-2525580 Msa1269370:intron 30.0%
GGAATATTATTAAGCACTAG+AGG + chr8_3:2525609-2525628 Msa1269370:intron 30.0%
TCTTTGCTCGTAACTTATAT+TGG - chr8_3:2525652-2525671 None:intergenic 30.0%
TAAGTTACGAGCAAAGAAAA+CGG + chr8_3:2525655-2525674 Msa1269370:intron 30.0%
TGACCATATAGAAAACAACT+AGG + chr8_3:2525832-2525851 Msa1269370:intron 30.0%
GACCATATAGAAAACAACTA+GGG + chr8_3:2525833-2525852 Msa1269370:intron 30.0%
!! GGAATTTTGAGAAATCACAA+TGG - chr8_3:2525876-2525895 None:intergenic 30.0%
!! CAGCTTTTAGAAATCAGAAA+GGG - chr8_3:2526109-2526128 None:intergenic 30.0%
!! ACAGCTTTTAGAAATCAGAA+AGG - chr8_3:2526110-2526129 None:intergenic 30.0%
CTTAAGCTTAATTAGTTCAG+GGG - chr8_3:2526186-2526205 None:intergenic 30.0%
CACTTAAGCTTAATTAGTTC+AGG - chr8_3:2526188-2526207 None:intergenic 30.0%
TTCTTTGGTTGAGATAACAT+TGG + chr8_3:2526235-2526254 Msa1269370:intron 30.0%
TATTTACCTTCAGTTTCAAG+AGG + chr8_3:2526322-2526341 Msa1269370:CDS 30.0%
TATCAAAAGCAAATTGAACG+TGG - chr8_3:2526476-2526495 None:intergenic 30.0%
TATTACTCCTCAAGAAATGT+TGG + chr8_3:2526557-2526576 Msa1269370:intron 30.0%
GAGCATAAAACATATATGCT+AGG + chr8_3:2526579-2526598 Msa1269370:intron 30.0%
AAATATTAGTGAACAACTGC+AGG + chr8_3:2526792-2526811 Msa1269370:CDS 30.0%
TGCAAACTTATAAAAGATCG+TGG - chr8_3:2526841-2526860 None:intergenic 30.0%
! ACGATCTTTTATAAGTTTGC+AGG + chr8_3:2526840-2526859 Msa1269370:CDS 30.0%
TCTGCATCAAATCAAAACTT+TGG + chr8_3:2526966-2526985 Msa1269370:intron 30.0%
CATGCAGATATATTACCATT+AGG - chr8_3:2527010-2527029 None:intergenic 30.0%
AATGGTAATATATCTGCATG+AGG + chr8_3:2527010-2527029 Msa1269370:intron 30.0%
! CTGGAAGGTATATATATGAT+GGG + chr8_3:2527148-2527167 Msa1269370:intron 30.0%
! TTACGAGTATAATGCTCTTT+TGG + chr8_3:2527208-2527227 Msa1269370:intron 30.0%
! ATAATGCTCTTTTGGATTGT+AGG + chr8_3:2527216-2527235 Msa1269370:intron 30.0%
! TAATGCTCTTTTGGATTGTA+GGG + chr8_3:2527217-2527236 Msa1269370:intron 30.0%
GGAATTCTCATCATTGTATA+AGG + chr8_3:2527479-2527498 Msa1269370:three_prime_UTR 30.0%
ATTATTTGAGCTGTGAATTG+TGG + chr8_3:2527671-2527690 Msa1269370:three_prime_UTR 30.0%
!! TTGAGTTGGAGAAATGGATT+TGG + chr8_3:2524153-2524172 Msa1269370:exon 35.0%
TTATTAATGCATAGTGGTGG+TGG - chr8_3:2524211-2524230 None:intergenic 35.0%
CATTGTAACTGTAGAGTGTA+TGG - chr8_3:2524243-2524262 None:intergenic 35.0%
TCAATAGAAGAACGTTGAAG+AGG - chr8_3:2524499-2524518 None:intergenic 35.0%
TCTTCAACGTTCTTCTATTG+AGG + chr8_3:2524498-2524517 Msa1269370:CDS 35.0%
! TTAACAAGTTGGATGGAACT+TGG + chr8_3:2524658-2524677 Msa1269370:CDS 35.0%
GGATACAGTACTTGAAAGAA+AGG - chr8_3:2524744-2524763 None:intergenic 35.0%
AAAATGATGGTAAGGAAGGA+AGG - chr8_3:2524778-2524797 None:intergenic 35.0%
AAAGAGGGAAAATGATGGTA+AGG - chr8_3:2524786-2524805 None:intergenic 35.0%
!! GAGCATTCCTAATTTGTTTG+AGG + chr8_3:2524931-2524950 Msa1269370:CDS 35.0%
TATCTGGGGAAATCAAAAGT+AGG - chr8_3:2525008-2525027 None:intergenic 35.0%
TAATATTGCGGAAATTGAGG+GGG - chr8_3:2525067-2525086 None:intergenic 35.0%
GCATAATATTGCGGAAATTG+AGG - chr8_3:2525070-2525089 None:intergenic 35.0%
! TTCTTTCTTTGAGTTCAAGC+TGG + chr8_3:2525124-2525143 Msa1269370:intron 35.0%
GTTGTGTAAATTAAAGACCC+GGG + chr8_3:2525347-2525366 Msa1269370:intron 35.0%
!! TTTTCCAACCATCTAAGGTT+AGG - chr8_3:2525533-2525552 None:intergenic 35.0%
ATTATTAAGCACTAGAGGGT+TGG + chr8_3:2525614-2525633 Msa1269370:intron 35.0%
AAGTTACGAGCAAAGAAAAC+GGG + chr8_3:2525656-2525675 Msa1269370:intron 35.0%
TCACGCTTATTTGATTCTCA+AGG + chr8_3:2525709-2525728 Msa1269370:intron 35.0%
TATTTGATTCTCAAGGAGCA+TGG + chr8_3:2525716-2525735 Msa1269370:intron 35.0%
AGCTAATGTACTTTCCAAAC+TGG - chr8_3:2525756-2525775 None:intergenic 35.0%
!! CTCCCTAGTTGTTTTCTATA+TGG - chr8_3:2525838-2525857 None:intergenic 35.0%
AAATGTTCTCAAGATGGATG+TGG - chr8_3:2525981-2526000 None:intergenic 35.0%
! CTATATCAAGTTAGCCTCAA+CGG + chr8_3:2526070-2526089 Msa1269370:intron 35.0%
GATTTAAAGATGAACCGTTG+AGG - chr8_3:2526087-2526106 None:intergenic 35.0%
! CAGCTTGAACATGTTTTCTT+TGG + chr8_3:2526220-2526239 Msa1269370:intron 35.0%
TGATTACCTCTTGAAACTGA+AGG - chr8_3:2526331-2526350 None:intergenic 35.0%
TAAAATATGGAAATGGGGCA+TGG - chr8_3:2526524-2526543 None:intergenic 35.0%
TTATGCTCCAACATTTCTTG+AGG - chr8_3:2526567-2526586 None:intergenic 35.0%
TATATTTGTGAACGGCCTAA+TGG + chr8_3:2526992-2527011 Msa1269370:intron 35.0%
!! GAAATTGAGCTTTGAAAGCA+CGG - chr8_3:2527116-2527135 None:intergenic 35.0%
CCATCATATATATACCTTCC+AGG - chr8_3:2527150-2527169 None:intergenic 35.0%
! CCTGGAAGGTATATATATGA+TGG + chr8_3:2527147-2527166 Msa1269370:intron 35.0%
ACAATGATGAGAATTCCTTG+TGG - chr8_3:2527476-2527495 None:intergenic 35.0%
!!! ACTTGCTACTTTTTGGTTGA+AGG + chr8_3:2527534-2527553 Msa1269370:three_prime_UTR 35.0%
!!! CTTGCTACTTTTTGGTTGAA+GGG + chr8_3:2527535-2527554 Msa1269370:three_prime_UTR 35.0%
!!! TTGCTACTTTTTGGTTGAAG+GGG + chr8_3:2527536-2527555 Msa1269370:three_prime_UTR 35.0%
AGATTGCATAGCCATGGAAA+TGG - chr8_3:2524287-2524306 None:intergenic 40.0%
ATGGAAACCTTACCTTACCT+GGG - chr8_3:2524317-2524336 None:intergenic 40.0%
AATGGAAACCTTACCTTACC+TGG - chr8_3:2524318-2524337 None:intergenic 40.0%
TCATCAATGTCAGGTGAATG+TGG + chr8_3:2524605-2524624 Msa1269370:intron 40.0%
AATGTGGAAGGAAGGAACAT+GGG + chr8_3:2524621-2524640 Msa1269370:CDS 40.0%
TGGAAGAGAATGAGAACATC+AGG - chr8_3:2524705-2524724 None:intergenic 40.0%
GGAAGGAAGGAAGAAATAGA+TGG - chr8_3:2524765-2524784 None:intergenic 40.0%
AGGGAAAATGATGGTAAGGA+AGG - chr8_3:2524782-2524801 None:intergenic 40.0%
CTTTCCTTCTGTCATGAGAT+AGG + chr8_3:2524835-2524854 Msa1269370:intron 40.0%
ATTGCGAATAACACCTCCAT+TGG - chr8_3:2524900-2524919 None:intergenic 40.0%
ACAAATTAGGAATGCTCCAG+CGG - chr8_3:2524928-2524947 None:intergenic 40.0%
!! GGAACAAGTTGATTGCAAGA+AGG - chr8_3:2524987-2525006 None:intergenic 40.0%
GAAACTGCATATGCATTGCT+AGG + chr8_3:2525198-2525217 Msa1269370:intron 40.0%
GCATATGCATTGCTAGGATT+TGG + chr8_3:2525204-2525223 Msa1269370:intron 40.0%
AGTATACTTCATCCTGGACT+AGG + chr8_3:2525260-2525279 Msa1269370:intron 40.0%
ACGTTATTAGTTCCTAGTCC+AGG - chr8_3:2525275-2525294 None:intergenic 40.0%
AGTTACGAGCAAAGAAAACG+GGG + chr8_3:2525657-2525676 Msa1269370:intron 40.0%
CAGAGAATAACTGTCCAGTT+TGG + chr8_3:2525739-2525758 Msa1269370:intron 40.0%
TCTCAAAATTCCTCCACAAG+AGG + chr8_3:2525884-2525903 Msa1269370:intron 40.0%
TGGATGGATCTCATTCTACT+AGG - chr8_3:2525961-2525980 None:intergenic 40.0%
AAACATGTTCAAGCTGACGA+AGG - chr8_3:2526216-2526235 None:intergenic 40.0%
TGCCAAGTTCACTCTTGTAT+CGG + chr8_3:2526292-2526311 Msa1269370:CDS 40.0%
GATGGGGAAGTGAAATTTCA+GGG - chr8_3:2526640-2526659 None:intergenic 40.0%
TGATGGGGAAGTGAAATTTC+AGG - chr8_3:2526641-2526660 None:intergenic 40.0%
AGCATCATACCAACCAAAGA+AGG - chr8_3:2526723-2526742 None:intergenic 40.0%
AAAGATCGTGGTAGTATTGC+TGG - chr8_3:2526829-2526848 None:intergenic 40.0%
TTGGATTGTAGGGAATCAGT+AGG + chr8_3:2527227-2527246 Msa1269370:intron 40.0%
TATGTCCAATTCCTCAACCA+CGG - chr8_3:2527420-2527439 None:intergenic 40.0%
TGGTTGAGGAATTGGACATA+TGG + chr8_3:2527420-2527439 Msa1269370:three_prime_UTR 40.0%
ATGGAGAGGAAGAAATAGAC+TGG + chr8_3:2527439-2527458 Msa1269370:three_prime_UTR 40.0%
! GAGAATTCCTTGTGGACTAT+AGG - chr8_3:2527468-2527487 None:intergenic 40.0%
!!! TACTTTTTGGTTGAAGGGGA+GGG + chr8_3:2527540-2527559 Msa1269370:three_prime_UTR 40.0%
TAAGCTTCTCGTTCCTTCTC+TGG - chr8_3:2524124-2524143 None:intergenic 45.0%
AAGGAACGAGAAGCTTAGCT+TGG + chr8_3:2524127-2524146 Msa1269370:five_prime_UTR 45.0%
!! TGGCAGTTGAGTTGGAGAAA+TGG + chr8_3:2524147-2524166 Msa1269370:exon 45.0%
AACAGCAGATTGCATAGCCA+TGG - chr8_3:2524293-2524312 None:intergenic 45.0%
TATGCAATCTGCTGTTACCC+AGG + chr8_3:2524297-2524316 Msa1269370:CDS 45.0%
AATCTGCTGTTACCCAGGTA+AGG + chr8_3:2524302-2524321 Msa1269370:intron 45.0%
TCTCTCCAAGACACACAAAG+AGG + chr8_3:2524460-2524479 Msa1269370:CDS 45.0%
AGAGTCCTCTTTGTGTGTCT+TGG - chr8_3:2524468-2524487 None:intergenic 45.0%
CAATGTCAGGTGAATGTGGA+AGG + chr8_3:2524609-2524628 Msa1269370:intron 45.0%
GAATGTGGAAGGAAGGAACA+TGG + chr8_3:2524620-2524639 Msa1269370:CDS 45.0%
AAGGAAGATTAGCAGCAGCT+TGG - chr8_3:2524725-2524744 None:intergenic 45.0%
CCTTCTGTCATGAGATAGGT+CGG + chr8_3:2524839-2524858 Msa1269370:intron 45.0%
TTATTCGCAATGTTGTCCGC+TGG + chr8_3:2524909-2524928 Msa1269370:CDS 45.0%
CAACTTGTCTACTGCGATGA+AGG - chr8_3:2525331-2525350 None:intergenic 45.0%
TTAGCTAGCATACGCAATCC+CGG - chr8_3:2525368-2525387 None:intergenic 45.0%
CGTGCGACTCCTAGAATAAA+AGG - chr8_3:2525486-2525505 None:intergenic 45.0%
ACACCTAGCCTAACCTTAGA+TGG + chr8_3:2525522-2525541 Msa1269370:intron 45.0%
! CAACCATCTAAGGTTAGGCT+AGG - chr8_3:2525528-2525547 None:intergenic 45.0%
CTAGCCTAACCTTAGATGGT+TGG + chr8_3:2525526-2525545 Msa1269370:intron 45.0%
! TTGCTCTCACCTTTGAGAAG+TGG + chr8_3:2525588-2525607 Msa1269370:intron 45.0%
ACCACTTCTTTGCTCAACTC+GGG - chr8_3:2525690-2525709 None:intergenic 45.0%
GACCACTTCTTTGCTCAACT+CGG - chr8_3:2525691-2525710 None:intergenic 45.0%
CACAATGGCCACTTCATCAA+CGG - chr8_3:2525861-2525880 None:intergenic 45.0%
GTAGGGGATCTCATTCTACT+AGG - chr8_3:2525920-2525939 None:intergenic 45.0%
AATGAGATCCCCTACACAAG+AGG + chr8_3:2525925-2525944 Msa1269370:intron 45.0%
GTTCTCAAGATGGATGTGGA+TGG - chr8_3:2525977-2525996 None:intergenic 45.0%
ATGTTCAAGCTGACGAAGGA+AGG - chr8_3:2526212-2526231 None:intergenic 45.0%
GGTTGAGATAACATTGGTGC+AGG + chr8_3:2526241-2526260 Msa1269370:intron 45.0%
ACATTGGTGCAGGAACAAGA+AGG + chr8_3:2526251-2526270 Msa1269370:intron 45.0%
!! GGAACAAGAAGGTGCTACAT+TGG + chr8_3:2526262-2526281 Msa1269370:intron 45.0%
GACCGATACAAGAGTGAACT+TGG - chr8_3:2526297-2526316 None:intergenic 45.0%
GAATGCGACATTGCCTTCTT+TGG + chr8_3:2526707-2526726 Msa1269370:intron 45.0%
ATTTGTGTGCACTGTCGTAC+TGG + chr8_3:2526897-2526916 Msa1269370:intron 45.0%
TCAAAGCTCAATTTCCCGTG+AGG + chr8_3:2527121-2527140 Msa1269370:CDS 45.0%
CAAAGCTCAATTTCCCGTGA+GGG + chr8_3:2527122-2527141 Msa1269370:CDS 45.0%
GATTGTAGGGAATCAGTAGG+AGG + chr8_3:2527230-2527249 Msa1269370:intron 45.0%
ATAAGCCGTGGTTGAGGAAT+TGG + chr8_3:2527412-2527431 Msa1269370:three_prime_UTR 45.0%
GAGGAATTGGACATATGGAG+AGG + chr8_3:2527425-2527444 Msa1269370:three_prime_UTR 45.0%
GAGAGGAAGAAATAGACTGG+AGG + chr8_3:2527442-2527461 Msa1269370:three_prime_UTR 45.0%
!!! CTACTTTTTGGTTGAAGGGG+AGG + chr8_3:2527539-2527558 Msa1269370:three_prime_UTR 45.0%
! CGTAAGGAGTGTACCAGAGA+AGG + chr8_3:2524108-2524127 Msa1269370:five_prime_UTR 50.0%
! GCTTAGCTTGGCAGTTGAGT+TGG + chr8_3:2524139-2524158 Msa1269370:five_prime_UTR 50.0%
GCTGTTACCCAGGTAAGGTA+AGG + chr8_3:2524307-2524326 Msa1269370:intron 50.0%
GTCAGGTGAATGTGGAAGGA+AGG + chr8_3:2524613-2524632 Msa1269370:intron 50.0%
CCGACCTATCTCATGACAGA+AGG - chr8_3:2524842-2524861 None:intergenic 50.0%
GAATGCCGTGATAGCTCCAA+TGG + chr8_3:2524881-2524900 Msa1269370:CDS 50.0%
CACCTCCATTGGAGCTATCA+CGG - chr8_3:2524889-2524908 None:intergenic 50.0%
TAGCTAGCATACGCAATCCC+GGG - chr8_3:2525367-2525386 None:intergenic 50.0%
CGACACTTCCTCTTGTGTAG+GGG - chr8_3:2525936-2525955 None:intergenic 50.0%
GCGACACTTCCTCTTGTGTA+GGG - chr8_3:2525937-2525956 None:intergenic 50.0%
AGCGACACTTCCTCTTGTGT+AGG - chr8_3:2525938-2525957 None:intergenic 50.0%
GCGACATTGCCTTCTTTGGT+TGG + chr8_3:2526711-2526730 Msa1269370:intron 50.0%
ATACCTTCCAGGATCCCTCA+CGG - chr8_3:2527139-2527158 None:intergenic 50.0%
CAGTAACACTCGATAAGCCG+TGG + chr8_3:2527400-2527419 Msa1269370:three_prime_UTR 50.0%
TGGTACACTCCTTACGCTCG+CGG - chr8_3:2524104-2524123 None:intergenic 55.0%
TGCCGTGATAGCTCCAATGG+AGG + chr8_3:2524884-2524903 Msa1269370:CDS 55.0%
! GCCCGAGTTGAGCAAAGAAG+TGG + chr8_3:2525686-2525705 Msa1269370:intron 55.0%
! CTAGGGAGCCGTTGATGAAG+TGG + chr8_3:2525850-2525869 Msa1269370:intron 55.0%
AGCGACACTTCCTCTTGTGG+AGG - chr8_3:2525897-2525916 None:intergenic 55.0%
AGGAGCGACACTTCCTCTTG+TGG - chr8_3:2525900-2525919 None:intergenic 55.0%
CAATTTCCCGTGAGGGATCC+TGG + chr8_3:2527129-2527148 Msa1269370:CDS 55.0%
TACCTTCCAGGATCCCTCAC+GGG - chr8_3:2527138-2527157 None:intergenic 55.0%
! ATGCTTTTGGGCCGTGCTGT+TGG + chr8_3:2527284-2527303 Msa1269370:CDS 55.0%
CACTCGATAAGCCGTGGTTG+AGG + chr8_3:2527406-2527425 Msa1269370:three_prime_UTR 55.0%
CTGGAGGCCTATAGTCCACA+AGG + chr8_3:2527458-2527477 Msa1269370:three_prime_UTR 55.0%
CAAAGAACGCCGCGAGCGTA+AGG + chr8_3:2524092-2524111 Msa1269370:five_prime_UTR 60.0%
TTCCCGTGAGGGATCCTGGA+AGG + chr8_3:2527133-2527152 Msa1269370:CDS 60.0%
!! CTTTTGGGCCGTGCTGTTGG+TGG + chr8_3:2527287-2527306 Msa1269370:CDS 60.0%
CTCCTCCTCCACCAACAGCA+CGG - chr8_3:2527298-2527317 None:intergenic 60.0%
! TTGGGCCGTGCTGTTGGTGG+AGG + chr8_3:2527290-2527309 Msa1269370:CDS 65.0%
! GGCCGTGCTGTTGGTGGAGG+AGG + chr8_3:2527293-2527312 Msa1269370:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 2524060 2527748 2524060 ID=Msa1269370;Name=Msa1269370
chr8_3 mRNA 2524060 2527748 2524060 ID=Msa1269370-mRNA-1;Parent=Msa1269370;Name=Msa1269370-mRNA-1;_AED=0.33;_eAED=0.33;_QI=106|1|1|1|1|1|8|396|278
chr8_3 exon 2524060 2524318 2524060 ID=Msa1269370-mRNA-1:exon:798;Parent=Msa1269370-mRNA-1
chr8_3 exon 2524415 2524528 2524415 ID=Msa1269370-mRNA-1:exon:799;Parent=Msa1269370-mRNA-1
chr8_3 exon 2524618 2524752 2524618 ID=Msa1269370-mRNA-1:exon:800;Parent=Msa1269370-mRNA-1
chr8_3 exon 2524857 2524952 2524857 ID=Msa1269370-mRNA-1:exon:801;Parent=Msa1269370-mRNA-1
chr8_3 exon 2526263 2526343 2526263 ID=Msa1269370-mRNA-1:exon:802;Parent=Msa1269370-mRNA-1
chr8_3 exon 2526775 2526861 2526775 ID=Msa1269370-mRNA-1:exon:803;Parent=Msa1269370-mRNA-1
chr8_3 exon 2527099 2527154 2527099 ID=Msa1269370-mRNA-1:exon:804;Parent=Msa1269370-mRNA-1
chr8_3 exon 2527238 2527748 2527238 ID=Msa1269370-mRNA-1:exon:805;Parent=Msa1269370-mRNA-1
chr8_3 five_prime_UTR 2524060 2524165 2524060 ID=Msa1269370-mRNA-1:five_prime_utr;Parent=Msa1269370-mRNA-1
chr8_3 CDS 2524166 2524318 2524166 ID=Msa1269370-mRNA-1:cds;Parent=Msa1269370-mRNA-1
chr8_3 CDS 2524415 2524528 2524415 ID=Msa1269370-mRNA-1:cds;Parent=Msa1269370-mRNA-1
chr8_3 CDS 2524618 2524752 2524618 ID=Msa1269370-mRNA-1:cds;Parent=Msa1269370-mRNA-1
chr8_3 CDS 2524857 2524952 2524857 ID=Msa1269370-mRNA-1:cds;Parent=Msa1269370-mRNA-1
chr8_3 CDS 2526263 2526343 2526263 ID=Msa1269370-mRNA-1:cds;Parent=Msa1269370-mRNA-1
chr8_3 CDS 2526775 2526861 2526775 ID=Msa1269370-mRNA-1:cds;Parent=Msa1269370-mRNA-1
chr8_3 CDS 2527099 2527154 2527099 ID=Msa1269370-mRNA-1:cds;Parent=Msa1269370-mRNA-1
chr8_3 CDS 2527238 2527352 2527238 ID=Msa1269370-mRNA-1:cds;Parent=Msa1269370-mRNA-1
chr8_3 three_prime_UTR 2527353 2527748 2527353 ID=Msa1269370-mRNA-1:three_prime_utr;Parent=Msa1269370-mRNA-1
Gene Sequence

>Msa1269370

ATGGATTTGGCTCTCAATTTCAATTTTAGTTTCAGTTCATCACCACCACCACTATGCATTAATAATAGGAGAAGCCATACACTCTACAGTTACAATGTTAATAGGAGGAAATCAAAATCCATTTCCATGGCTATGCAATCTGCTGTTACCCAGGCATATGATTCTGAGTTAGAAAACAAGAAGCATGAGCTTTTAACATCTCTCCAAGACACACAAAGAGGACTCTTAACAACTCCTCTTCAACGTTCTTCTATTGAGGAAGCTCTTGTGAATGTGGAAGGAAGGAACATGGGTCACCCAATTGATTTTAACAAGTTGGATGGAACTTGGCGCTTGCAATATACTTCTGCTCCTGATGTTCTCATTCTCTTCCAAGCTGCTGCTAATCTTCCTTTCTTTCAAGTCGGACAAATATTTCAGAAATTTGAATGCCGTGATAGCTCCAATGGAGGTGTTATTCGCAATGTTGTCCGCTGGAGCATTCCTAATTTGTTTGAGGAACAAGAAGGTGCTACATTGGTTGTATCTGCCAAGTTCACTCTTGTATCGGTCCGAAATATTTACCTTCAGTTTCAAGAGATCTCAGTTCAAGATATAAATATTAGTGAACAACTGCAGGCTCTAATATCTCCAGCAATACTACCACGATCTTTTATAAGTTTGCAGATATTGCAATATCTCCGTGCTTTCAAAGCTCAATTTCCCGTGAGGGATCCTGGAAGGGAATCAGTAGGAGGATTATATTATCTGAGTTATTTGGATGATAATATGCTTTTGGGCCGTGCTGTTGGTGGAGGAGGAGTATTTGTGTTTACGAGAGCTCAATCACTTTACTGA

Protein sequence

>Msa1269370

MDLALNFNFSFSSSPPPLCINNRRSHTLYSYNVNRRKSKSISMAMQSAVTQAYDSELENKKHELLTSLQDTQRGLLTTPLQRSSIEEALVNVEGRNMGHPIDFNKLDGTWRLQYTSAPDVLILFQAAANLPFFQVGQIFQKFECRDSSNGGVIRNVVRWSIPNLFEEQEGATLVVSAKFTLVSVRNIYLQFQEISVQDINISEQLQALISPAILPRSFISLQILQYLRAFKAQFPVRDPGRESVGGLYYLSYLDDNMLLGRAVGGGGVFVFTRAQSLY*