AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1372570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1372570 MtrunA17_Chr8g0392631 88.889 243 13 4 1 240 1 232 1.89e-154 428
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1372570 AT1G18060.1 70.051 197 58 1 43 238 28 224 9.02e-100 290

Find 63 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATCATTCAGAGATATT+TGG 0.159294 tig0019280:+60894 None:intergenic
TCTCTGAGTTTCTGACTTAT+TGG 0.171564 tig0019280:-61386 Msa1372570:three_prime_UTR
GAAAGAAATATTCACATATA+TGG 0.257473 tig0019280:-61364 Msa1372570:three_prime_UTR
TGATAAATTGTTAGGCAAAA+AGG 0.263160 tig0019280:-61735 Msa1372570:intron
ATCGAAAACGGTGTATTTCT+TGG 0.273425 tig0019280:-61712 Msa1372570:CDS
TGTTGAATAATAACACATTA+TGG 0.301842 tig0019280:+60981 None:intergenic
GAAACAGTTGAAGTTCATTC+AGG 0.309771 tig0019280:-61338 Msa1372570:intron
AATAGCAGCATATACCCTTT+TGG 0.310130 tig0019280:+62932 None:intergenic
ACATATTGAGTACTAGGTTT+TGG 0.317968 tig0019280:-61089 Msa1372570:three_prime_UTR
CCGGCCATTTGTGAGAAAAT+AGG 0.320453 tig0019280:-61173 Msa1372570:three_prime_UTR
GTTGTTCTGAGAGGCTTTGA+TGG 0.339405 tig0019280:+63053 None:intergenic
ATGCCCCTGCTGTAGAAATT+CGG 0.341608 tig0019280:-61198 Msa1372570:intron
AAACAACCCACTTGTTGTTC+AGG 0.352992 tig0019280:-62964 Msa1372570:CDS
GGAATGCATTTCGTCTATAA+TGG 0.355470 tig0019280:-60792 Msa1372570:three_prime_UTR
GGATTTGTTGCTGGCTGAAA+TGG 0.375364 tig0019280:-61068 Msa1372570:three_prime_UTR
TGCCCCTGCTGTAGAAATTC+GGG 0.391526 tig0019280:-61197 Msa1372570:intron
GAAGTGGAGGCACTGCATTT+TGG 0.392068 tig0019280:-61483 Msa1372570:CDS
TTTGTGGAGGCACTGCATTT+TGG 0.399647 tig0019280:-61421 Msa1372570:three_prime_UTR
GAGACGTACAACACATGAAT+TGG 0.417843 tig0019280:+63086 None:intergenic
GAGAACCTTCGAATAAAAGT+TGG 0.424151 tig0019280:-61622 Msa1372570:CDS
ACAAATCAGCCTTGGACAAA+AGG 0.429622 tig0019280:-61584 Msa1372570:CDS
TTAGTTACATATTGAGTACT+AGG 0.432461 tig0019280:-61095 Msa1372570:three_prime_UTR
AGCACTCACACTTGCAAGAT+AGG 0.432634 tig0019280:+60729 None:intergenic
GCCTTGGACAAAAGGAAGAC+AGG 0.435622 tig0019280:-61576 Msa1372570:CDS
AGGATTCCCCTGGGAGAACC+TGG 0.442328 tig0019280:-62540 Msa1372570:CDS
ATCGGACAATTAACATTTGA+AGG 0.443887 tig0019280:-61685 Msa1372570:CDS
CAAAAGGAAGACAGGGAACC+AGG 0.469312 tig0019280:-61568 Msa1372570:CDS
TCTTGACACCCTTGGAGGAA+AGG 0.485221 tig0019280:-62560 Msa1372570:CDS
CAGGGGAATCCTTTCCTCCA+AGG 0.495511 tig0019280:+62551 None:intergenic
CAGCTAGCTACATTTGCAAA+TGG 0.499233 tig0019280:-63135 Msa1372570:exon
AAACCTCTACAAATCAGCCT+TGG 0.505462 tig0019280:-61592 Msa1372570:CDS
GAAAAGAAAGTCATAAGTAT+TGG 0.511297 tig0019280:+60827 None:intergenic
GCAGCTAACTTCACCTAATG+AGG 0.512472 tig0019280:+61019 None:intergenic
TTCAGGACGACAATCCCAAA+AGG 0.518826 tig0019280:-62947 Msa1372570:CDS
CTTGGAGGAAAGGATTCCCC+TGG 0.519361 tig0019280:-62550 Msa1372570:CDS
TGTCCAAGGCTGATTTGTAG+AGG 0.525164 tig0019280:+61589 None:intergenic
GGTGTATTTCTTGGACCTAT+CGG 0.527087 tig0019280:-61703 Msa1372570:CDS
AGGGGAATCCTTTCCTCCAA+GGG 0.528136 tig0019280:+62552 None:intergenic
ATAAGCATCCAGGTTCTCCC+AGG 0.529448 tig0019280:+62532 None:intergenic
TCAAATGTTAATTGTCCGAT+AGG 0.532866 tig0019280:+61688 None:intergenic
GCTGAAAGAATCTCTTCTGC+TGG 0.545166 tig0019280:+62625 None:intergenic
ATGTAACTAACTGAATCTGA+TGG 0.559804 tig0019280:+61108 None:intergenic
TATCTTTACGTAGGAAGTAG+AGG 0.562498 tig0019280:-62692 Msa1372570:intron
GTTGCTCGAGGCCGAAGTGG+AGG 0.570500 tig0019280:-61496 Msa1372570:CDS
AAATGCAGCTAAGACAAGAA+AGG 0.570671 tig0019280:-62650 Msa1372570:CDS
CTGCTGTAGAAATTCGGGCC+CGG 0.582483 tig0019280:-61192 Msa1372570:intron
TTGTCGTCCTGAACAACAAG+TGG 0.583884 tig0019280:+62957 None:intergenic
AATCTCTGAACAGCTGTGAG+AGG 0.593439 tig0019280:+62379 None:intergenic
CCTTGGACAAAAGGAAGACA+GGG 0.594579 tig0019280:-61575 Msa1372570:CDS
TAAAATGGTTGAGAAGTGAA+AGG 0.596929 tig0019280:-63179 Msa1372570:five_prime_UTR
TCAGGACGACAATCCCAAAA+GGG 0.608447 tig0019280:-62946 Msa1372570:intron
TAAGCATCCAGGTTCTCCCA+GGG 0.619857 tig0019280:+62533 None:intergenic
GCTGTTGCTCGAGGCCGAAG+TGG 0.620105 tig0019280:-61499 Msa1372570:CDS
AGGGTGTCAAGAAAAGAAGA+AGG 0.621327 tig0019280:+62571 None:intergenic
AGACAGGGAACCAGGTACAA+AGG 0.628697 tig0019280:-61560 Msa1372570:CDS
CATTTGAAGGCAGACTGTCG+TGG 0.634559 tig0019280:-61672 Msa1372570:CDS
TTGGAGGAAAGGATTCCCCT+GGG 0.641606 tig0019280:-62549 Msa1372570:CDS
AATGCATTCCAACAAATGTG+TGG 0.652324 tig0019280:+60805 None:intergenic
AAAATGCAGTGCCTCCACTT+CGG 0.663787 tig0019280:+61485 None:intergenic
GAGGAAATAGCTGTTGCTCG+AGG 0.672148 tig0019280:-61508 Msa1372570:CDS
TGTCGTCCTGAACAACAAGT+GGG 0.688830 tig0019280:+62958 None:intergenic
ATGTCGTAACATCTTTACTG+TGG 0.709946 tig0019280:-60958 Msa1372570:three_prime_UTR
AAGCATCCAGGTTCTCCCAG+GGG 0.717216 tig0019280:+62534 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAGTAAAGTAAAA+TGG - tig0019280:60760-60779 Msa1372570:three_prime_UTR 10.0%
!!! AAATTAAATTAAGTCGTTTT+TGG + tig0019280:61234-61253 None:intergenic 15.0%
!!! GAATTTTAGAAAAAATTAGA+TGG - tig0019280:61539-61558 Msa1372570:CDS 15.0%
!!! ATTAATTTTTCCACTATAAA+TGG + tig0019280:61664-61683 None:intergenic 15.0%
!!! TTTTAGAAAAAATTAGATGG+TGG - tig0019280:61542-61561 Msa1372570:CDS 20.0%
!!! TATCTAGAATGAAATATAGA+TGG + tig0019280:61632-61651 None:intergenic 20.0%
!!! GTTTTTATCTATGAGTTATA+AGG - tig0019280:62005-62024 Msa1372570:intron 20.0%
!!! TCTTTAGAAGAAAAAAAACT+AGG - tig0019280:62152-62171 Msa1372570:intron 20.0%
!!! CTTTAGAAGAAAAAAAACTA+GGG - tig0019280:62153-62172 Msa1372570:intron 20.0%
!!! TGTTATGTTGATAAATTGTT+AGG - tig0019280:62211-62230 Msa1372570:intron 20.0%
!! ACATAAAACCAGATAAAAAA+TGG + tig0019280:62422-62441 None:intergenic 20.0%
!! GAAAGAAATATTCACATATA+TGG - tig0019280:62590-62609 Msa1372570:CDS 20.0%
!! TGTTGAATAATAACACATTA+TGG + tig0019280:62976-62995 None:intergenic 20.0%
! AATATATATCGAAGAGCTTA+TGG + tig0019280:61109-61128 None:intergenic 25.0%
! AAGCTCTTCGATATATATTA+TGG - tig0019280:61110-61129 Msa1372570:three_prime_UTR 25.0%
!! TTTAACTTCTATCTTTACGT+AGG - tig0019280:61253-61272 Msa1372570:intron 25.0%
! CTTCTAATTATGCAAATGAA+GGG + tig0019280:61691-61710 None:intergenic 25.0%
! TCAAAACACAAACACATAAA+AGG + tig0019280:61720-61739 None:intergenic 25.0%
! TATTAAGGACAATTCTACAT+TGG - tig0019280:61801-61820 Msa1372570:intron 25.0%
! TGGTAAATCACAATGTTATT+TGG - tig0019280:61965-61984 Msa1372570:intron 25.0%
!! AATCACAATGTTATTTGGAA+TGG - tig0019280:61970-61989 Msa1372570:intron 25.0%
!! CAATGAAGAATCTTTTATAG+AGG + tig0019280:62031-62050 None:intergenic 25.0%
! TGATAAATTGTTAGGCAAAA+AGG - tig0019280:62219-62238 Msa1372570:intron 25.0%
!! TTGATTCTTTTGCATTTTTG+TGG - tig0019280:62517-62536 Msa1372570:intron 25.0%
! TCTATATACATTTCAGTTTC+TGG + tig0019280:62692-62711 None:intergenic 25.0%
! TTAGTTACATATTGAGTACT+AGG - tig0019280:62859-62878 Msa1372570:intron 25.0%
! TCAAATCATTCAGAGATATT+TGG + tig0019280:63063-63082 None:intergenic 25.0%
! GAAAAGAAAGTCATAAGTAT+TGG + tig0019280:63130-63149 None:intergenic 25.0%
TAAAATGGTTGAGAAGTGAA+AGG - tig0019280:60775-60794 Msa1372570:three_prime_UTR 30.0%
!!! GTTGTTTTGAATGTCATCAA+GGG + tig0019280:60977-60996 None:intergenic 30.0%
! ATGTTCTTTTCCTTTCCATT+TGG - tig0019280:61054-61073 Msa1372570:three_prime_UTR 30.0%
! TGTTCTTTTCCTTTCCATTT+GGG - tig0019280:61055-61074 Msa1372570:three_prime_UTR 30.0%
!!! GATGCTTATTTTTACTGCTA+AGG - tig0019280:61436-61455 Msa1372570:three_prime_UTR 30.0%
! TCTCTTATTTCGTATGATTC+TGG - tig0019280:61471-61490 Msa1372570:CDS 30.0%
ACATAAGAGTCCATTTATAG+TGG - tig0019280:61651-61670 Msa1372570:CDS 30.0%
GCTTCTAATTATGCAAATGA+AGG + tig0019280:61692-61711 None:intergenic 30.0%
!! TGTGTTTTGAACTACATTCT+CGG - tig0019280:61730-61749 Msa1372570:intron 30.0%
TTCTACATTGGATATTGTGA+TGG - tig0019280:61813-61832 Msa1372570:intron 30.0%
ATAACATTGTGATTTACCAC+CGG + tig0019280:61964-61983 None:intergenic 30.0%
TTGCATAAGAAGAGTTAAGA+AGG + tig0019280:62054-62073 None:intergenic 30.0%
TATGCCAAATCATCAAACTA+TGG - tig0019280:62121-62140 Msa1372570:intron 30.0%
! TTAGCCATAGTTTGATGATT+TGG + tig0019280:62128-62147 None:intergenic 30.0%
TCAAATGTTAATTGTCCGAT+AGG + tig0019280:62269-62288 None:intergenic 30.0%
ATCGGACAATTAACATTTGA+AGG - tig0019280:62269-62288 Msa1372570:intron 30.0%
!! CTGATTTGTAGAGGTTTTAA+AGG + tig0019280:62359-62378 None:intergenic 30.0%
!!! CAAAGGATCCATTTTTTATC+TGG - tig0019280:62411-62430 Msa1372570:intron 30.0%
!!! TATCTGGTTTTATGTTGATG+AGG - tig0019280:62427-62446 Msa1372570:intron 30.0%
! ATTCTTTTGCATTTTTGTGG+AGG - tig0019280:62520-62539 Msa1372570:CDS 30.0%
! GAATCCTATTTTCTCACAAA+TGG + tig0019280:62788-62807 None:intergenic 30.0%
ATGTAACTAACTGAATCTGA+TGG + tig0019280:62849-62868 None:intergenic 30.0%
! ACATATTGAGTACTAGGTTT+TGG - tig0019280:62865-62884 Msa1372570:intron 30.0%
ACCTAATGAGGAAAAAAGTT+TGG + tig0019280:62926-62945 None:intergenic 30.0%
GAGTAGATAAAAAAGGAAGA+CGG + tig0019280:63102-63121 None:intergenic 30.0%
GGTAAGAGAGTAGATAAAAA+AGG + tig0019280:63109-63128 None:intergenic 30.0%
! TTTCTTTTCCACACATTTGT+TGG - tig0019280:63141-63160 Msa1372570:five_prime_UTR 30.0%
!!! GGTTGTTTTGAATGTCATCA+AGG + tig0019280:60978-60997 None:intergenic 35.0%
! ATAGCAGCATATACCCTTTT+GGG + tig0019280:61024-61043 None:intergenic 35.0%
! AATAGCAGCATATACCCTTT+TGG + tig0019280:61025-61044 None:intergenic 35.0%
! GTTCTTTTCCTTTCCATTTG+GGG - tig0019280:61056-61075 Msa1372570:three_prime_UTR 35.0%
CTTATGGACATGGTATAAGT+TGG + tig0019280:61093-61112 None:intergenic 35.0%
TATCTTTACGTAGGAAGTAG+AGG - tig0019280:61262-61281 Msa1372570:intron 35.0%
AAATGCAGCTAAGACAAGAA+AGG - tig0019280:61304-61323 Msa1372570:intron 35.0%
AGCAGTAAAAATAAGCATCC+AGG + tig0019280:61435-61454 None:intergenic 35.0%
CTTAGCCACTTACATGAAAT+CGG - tig0019280:61882-61901 Msa1372570:intron 35.0%
TTAGCCACTTACATGAAATC+GGG - tig0019280:61883-61902 Msa1372570:intron 35.0%
TAACATTGTGATTTACCACC+GGG + tig0019280:61963-61982 None:intergenic 35.0%
TGGCATATGCAACATTTACA+AGG + tig0019280:62108-62127 None:intergenic 35.0%
TAGGCAAAAAGGATCGAAAA+CGG - tig0019280:62230-62249 Msa1372570:intron 35.0%
ATCGAAAACGGTGTATTTCT+TGG - tig0019280:62242-62261 Msa1372570:intron 35.0%
GAGAACCTTCGAATAAAAGT+TGG - tig0019280:62332-62351 Msa1372570:intron 35.0%
! AAGGTCCAACTTTTATTCGA+AGG + tig0019280:62340-62359 None:intergenic 35.0%
AAAAATGGATCCTTTGTACC+TGG + tig0019280:62407-62426 None:intergenic 35.0%
TCTCTGAGTTTCTGACTTAT+TGG - tig0019280:62568-62587 Msa1372570:CDS 35.0%
GAAACAGTTGAAGTTCATTC+AGG - tig0019280:62616-62635 Msa1372570:CDS 35.0%
!!! GCCAAACTTTTTTCCTCATT+AGG - tig0019280:62922-62941 Msa1372570:intron 35.0%
ATGTCGTAACATCTTTACTG+TGG - tig0019280:62996-63015 Msa1372570:CDS 35.0%
AATGCATTCCAACAAATGTG+TGG + tig0019280:63152-63171 None:intergenic 35.0%
GGAATGCATTTCGTCTATAA+TGG - tig0019280:63162-63181 Msa1372570:five_prime_UTR 35.0%
CAGCTAGCTACATTTGCAAA+TGG - tig0019280:60819-60838 Msa1372570:three_prime_UTR 40.0%
GAGACGTACAACACATGAAT+TGG + tig0019280:60871-60890 None:intergenic 40.0%
! GTTGTTGTTGTTGTTCTGAG+AGG + tig0019280:60913-60932 None:intergenic 40.0%
!! AAACAACCCACTTGTTGTTC+AGG - tig0019280:60990-61009 Msa1372570:three_prime_UTR 40.0%
TATCGAAGAGCTTATGGACA+TGG + tig0019280:61103-61122 None:intergenic 40.0%
! AGGGTGTCAAGAAAAGAAGA+AGG + tig0019280:61386-61405 None:intergenic 40.0%
! TCTTCTTTTCTTGACACCCT+TGG - tig0019280:61386-61405 Msa1372570:three_prime_UTR 40.0%
! TACGAGGTTGTGAGGATTTT+AGG - tig0019280:61845-61864 Msa1372570:intron 40.0%
TAGCCACTTACATGAAATCG+GGG - tig0019280:61884-61903 Msa1372570:intron 40.0%
TAACCCCGATTTCATGTAAG+TGG + tig0019280:61890-61909 None:intergenic 40.0%
AACATTGTGATTTACCACCG+GGG + tig0019280:61962-61981 None:intergenic 40.0%
! GTTATTTGGAATGGCTCTTG+TGG - tig0019280:61979-61998 Msa1372570:intron 40.0%
GGTGTATTTCTTGGACCTAT+CGG - tig0019280:62251-62270 Msa1372570:intron 40.0%
AAACCTCTACAAATCAGCCT+TGG - tig0019280:62362-62381 Msa1372570:intron 40.0%
ACAAATCAGCCTTGGACAAA+AGG - tig0019280:62370-62389 Msa1372570:CDS 40.0%
! CTATTTTCTCACAAATGGCC+GGG + tig0019280:62783-62802 None:intergenic 40.0%
! CCTATTTTCTCACAAATGGC+CGG + tig0019280:62784-62803 None:intergenic 40.0%
!!! CTAGGTTTTGGATTTGTTGC+TGG - tig0019280:62877-62896 Msa1372570:intron 40.0%
!! GTTGTTCTGAGAGGCTTTGA+TGG + tig0019280:60904-60923 None:intergenic 45.0%
TGTCGTCCTGAACAACAAGT+GGG + tig0019280:60999-61018 None:intergenic 45.0%
TTGTCGTCCTGAACAACAAG+TGG + tig0019280:61000-61019 None:intergenic 45.0%
TTCAGGACGACAATCCCAAA+AGG - tig0019280:61007-61026 Msa1372570:three_prime_UTR 45.0%
TCAGGACGACAATCCCAAAA+GGG - tig0019280:61008-61027 Msa1372570:three_prime_UTR 45.0%
CATAAGCTCCCCAAATGGAA+AGG + tig0019280:61067-61086 None:intergenic 45.0%
CTTTCCATTTGGGGAGCTTA+TGG - tig0019280:61065-61084 Msa1372570:three_prime_UTR 45.0%
GCTGAAAGAATCTCTTCTGC+TGG + tig0019280:61332-61351 None:intergenic 45.0%
! TCTTTTCTTGACACCCTTGG+AGG - tig0019280:61389-61408 Msa1372570:three_prime_UTR 45.0%
AATCTCTGAACAGCTGTGAG+AGG + tig0019280:61578-61597 None:intergenic 45.0%
!! GTGATGGTACCACTTTTACG+AGG - tig0019280:61829-61848 Msa1372570:intron 45.0%
!! ACCACTTTTACGAGGTTGTG+AGG - tig0019280:61837-61856 Msa1372570:intron 45.0%
TCCTCACAACCTCGTAAAAG+TGG + tig0019280:61841-61860 None:intergenic 45.0%
!! TGTCCAAGGCTGATTTGTAG+AGG + tig0019280:62368-62387 None:intergenic 45.0%
CCTTGGACAAAAGGAAGACA+GGG - tig0019280:62379-62398 Msa1372570:CDS 45.0%
AAAATGCAGTGCCTCCACTT+CGG + tig0019280:62472-62491 None:intergenic 45.0%
!!! TTTGTGGAGGCACTGCATTT+TGG - tig0019280:62533-62552 Msa1372570:CDS 45.0%
ATGCCCCTGCTGTAGAAATT+CGG - tig0019280:62756-62775 Msa1372570:intron 45.0%
CCGGCCATTTGTGAGAAAAT+AGG - tig0019280:62781-62800 Msa1372570:intron 45.0%
!! GGATTTGTTGCTGGCTGAAA+TGG - tig0019280:62886-62905 Msa1372570:intron 45.0%
GCAGCTAACTTCACCTAATG+AGG + tig0019280:62938-62957 None:intergenic 45.0%
!!! TATAATTTTTACTTATATTA+AGG - tig0019280:61786-61805 Msa1372570:intron 5.0%
GGTTCCATAAGCTCCCCAAA+TGG + tig0019280:61072-61091 None:intergenic 50.0%
TCTTGACACCCTTGGAGGAA+AGG - tig0019280:61394-61413 Msa1372570:three_prime_UTR 50.0%
AGGGGAATCCTTTCCTCCAA+GGG + tig0019280:61405-61424 None:intergenic 50.0%
TTGGAGGAAAGGATTCCCCT+GGG - tig0019280:61405-61424 Msa1372570:three_prime_UTR 50.0%
TAAGCATCCAGGTTCTCCCA+GGG + tig0019280:61424-61443 None:intergenic 50.0%
ATAAGCATCCAGGTTCTCCC+AGG + tig0019280:61425-61444 None:intergenic 50.0%
CATTTGAAGGCAGACTGTCG+TGG - tig0019280:62282-62301 Msa1372570:intron 50.0%
GCCTTGGACAAAAGGAAGAC+AGG - tig0019280:62378-62397 Msa1372570:CDS 50.0%
! CCCTGTCTTCCTTTTGTCCA+AGG + tig0019280:62382-62401 None:intergenic 50.0%
CAAAAGGAAGACAGGGAACC+AGG - tig0019280:62386-62405 Msa1372570:CDS 50.0%
AGACAGGGAACCAGGTACAA+AGG - tig0019280:62394-62413 Msa1372570:CDS 50.0%
GAGGAAATAGCTGTTGCTCG+AGG - tig0019280:62446-62465 Msa1372570:intron 50.0%
!!! GAAGTGGAGGCACTGCATTT+TGG - tig0019280:62471-62490 Msa1372570:intron 50.0%
!!! GAGGCACTGCATTTTGGTGT+CGG - tig0019280:62477-62496 Msa1372570:intron 50.0%
!!! ATTTTGGTGTCGGTGTCGTC+AGG - tig0019280:62487-62506 Msa1372570:intron 50.0%
!!! GAGGCACTGCATTTTGGTGT+CGG - tig0019280:62477-62496 Msa1372570:intron 50.0%
TGCCCCTGCTGTAGAAATTC+GGG - tig0019280:62757-62776 Msa1372570:intron 50.0%
CAGGGGAATCCTTTCCTCCA+AGG + tig0019280:61406-61425 None:intergenic 55.0%
CTTGGAGGAAAGGATTCCCC+TGG - tig0019280:61404-61423 Msa1372570:three_prime_UTR 55.0%
AAGCATCCAGGTTCTCCCAG+GGG + tig0019280:61423-61442 None:intergenic 55.0%
GGTTTAGCACAAGTGGTCGG+TGG + tig0019280:61941-61960 None:intergenic 55.0%
CGGGGTTTAGCACAAGTGGT+CGG + tig0019280:61944-61963 None:intergenic 55.0%
CGACCACTTGTGCTAAACCC+CGG - tig0019280:61942-61961 Msa1372570:intron 55.0%
GGCCCGAATTTCTACAGCAG+GGG + tig0019280:62762-62781 None:intergenic 55.0%
GGGCCCGAATTTCTACAGCA+GGG + tig0019280:62763-62782 None:intergenic 55.0%
CTGCTGTAGAAATTCGGGCC+CGG - tig0019280:62762-62781 Msa1372570:intron 55.0%
AGGATTCCCCTGGGAGAACC+TGG - tig0019280:61414-61433 Msa1372570:three_prime_UTR 60.0%
AGCACAAGTGGTCGGTGGCT+CGG + tig0019280:61936-61955 None:intergenic 60.0%
CCACCGGGGTTTAGCACAAG+TGG + tig0019280:61948-61967 None:intergenic 60.0%
CCACTTGTGCTAAACCCCGG+TGG - tig0019280:61945-61964 Msa1372570:intron 60.0%
CGGGCCCGAATTTCTACAGC+AGG + tig0019280:62764-62783 None:intergenic 60.0%
!! GCTCGGTGTGCAGGGTGTGT+GGG + tig0019280:61919-61938 None:intergenic 65.0%
GCTGTTGCTCGAGGCCGAAG+TGG - tig0019280:62455-62474 Msa1372570:intron 65.0%
GTTGCTCGAGGCCGAAGTGG+AGG - tig0019280:62458-62477 Msa1372570:intron 65.0%
!! GGCTCGGTGTGCAGGGTGTG+TGG + tig0019280:61920-61939 None:intergenic 70.0%
!! GGTCGGTGGCTCGGTGTGCA+GGG + tig0019280:61927-61946 None:intergenic 70.0%
!! TGGTCGGTGGCTCGGTGTGC+AGG + tig0019280:61928-61947 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0019280 gene 60738 63238 60738 ID=Msa1372570;Name=Msa1372570
tig0019280 mRNA 60738 63238 60738 ID=Msa1372570-mRNA-1;Parent=Msa1372570;Name=Msa1372570-mRNA-1;_AED=0.17;_eAED=0.17;_QI=100|1|1|1|0.75|0.6|5|585|240
tig0019280 exon 60738 61205 60738 ID=Msa1372570-mRNA-1:exon:2823;Parent=Msa1372570-mRNA-1
tig0019280 exon 61339 61743 61339 ID=Msa1372570-mRNA-1:exon:2822;Parent=Msa1372570-mRNA-1
tig0019280 exon 62369 62428 62369 ID=Msa1372570-mRNA-1:exon:2821;Parent=Msa1372570-mRNA-1
tig0019280 exon 62519 62701 62519 ID=Msa1372570-mRNA-1:exon:2820;Parent=Msa1372570-mRNA-1
tig0019280 exon 62947 63238 62947 ID=Msa1372570-mRNA-1:exon:2819;Parent=Msa1372570-mRNA-1
tig0019280 five_prime_UTR 63139 63238 63139 ID=Msa1372570-mRNA-1:five_prime_utr;Parent=Msa1372570-mRNA-1
tig0019280 CDS 62947 63138 62947 ID=Msa1372570-mRNA-1:cds;Parent=Msa1372570-mRNA-1
tig0019280 CDS 62519 62701 62519 ID=Msa1372570-mRNA-1:cds;Parent=Msa1372570-mRNA-1
tig0019280 CDS 62369 62428 62369 ID=Msa1372570-mRNA-1:cds;Parent=Msa1372570-mRNA-1
tig0019280 CDS 61456 61743 61456 ID=Msa1372570-mRNA-1:cds;Parent=Msa1372570-mRNA-1
tig0019280 three_prime_UTR 61339 61455 61339 ID=Msa1372570-mRNA-1:three_prime_utr;Parent=Msa1372570-mRNA-1
tig0019280 three_prime_UTR 60738 61205 60738 ID=Msa1372570-mRNA-1:three_prime_utr;Parent=Msa1372570-mRNA-1
Gene Sequence

>Msa1372570

ATGGCAATGAACTACTGTATACACACATCACCAATTCATGTGTTGTACGTCTCATCTTTTAAACCATCAAAGCCTCTCAGAACAACAACAACAACAAAACATCATCATCATGTTCAAAGAACAAGAATAAGAGCAACCCTTGATGACATTCAAAACAACCCACTTGTTGTTCAGGACGACAATCCCAAAAGGGAAGTAGAGGAATGTGTGAAACTGCTTAAAAATGCAGCTAAGACAAGAAAGGTACCAGCAGAAGAGATTCTTTCAGCACTGTCTCTCATTGAGAAAGCAAAAATTGATCCTTCTTCTTTTCTTGACACCCTTGGAGGAAAGGATTCCCCTGGGAGAACCTGGATGCTTATTTTTACTGCTAAGAAAAAATTAGATGGTGGTGTATATTTTCCTCTCACAGCTGTTCAGAGATTTGATGCTGCTGCAAAAAGGATCGAAAACGGTGTATTTCTTGGACCTATCGGACAATTAACATTTGAAGGCAGACTGTCGTGGAAAAACAGAATATTGTCTTTCATTTTTGAGAACCTTCGAATAAAAGTTGGACCTTTAAAACCTCTACAAATCAGCCTTGGACAAAAGGAAGACAGGGAACCAGGTACAAAGGATCCATTTTTTATCTGGTTTTATGTTGATGAGGAAATAGCTGTTGCTCGAGGCCGAAGTGGAGGCACTGCATTTTGGTGTCGGTGTCGTCAGGTTGATATTTGA

Protein sequence

>Msa1372570

MAMNYCIHTSPIHVLYVSSFKPSKPLRTTTTTKHHHHVQRTRIRATLDDIQNNPLVVQDDNPKREVEECVKLLKNAAKTRKVPAEEILSALSLIEKAKIDPSSFLDTLGGKDSPGRTWMLIFTAKKKLDGGVYFPLTAVQRFDAAAKRIENGVFLGPIGQLTFEGRLSWKNRILSFIFENLRIKVGPLKPLQISLGQKEDREPGTKDPFFIWFYVDEEIAVARGRSGGTAFWCRCRQVDI*