AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0937350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0937350 MtrunA17_Chr6g0453341 94.672 244 0 2 1 231 11 254 3.48e-167 461
Msa0937350 MtrunA17_Chr7g0217661 81.148 244 31 3 1 231 1 242 3.80e-141 394
Msa0937350 MtrunA17_Chr5g0417701 70.000 250 51 5 1 229 1 247 2.44e-120 342
Msa0937350 MtrunA17_Chr4g0042521 70.120 251 51 5 1 230 1 248 1.39e-118 338
Msa0937350 MtrunA17_Chr3g0128801 73.661 224 38 3 27 229 30 253 7.42e-116 331
Msa0937350 MtrunA17_Chr3g0092071 71.179 229 45 3 22 229 19 247 5.27e-115 328
Msa0937350 MtrunA17_Chr3g0128791 73.214 224 39 3 27 229 30 253 7.55e-115 328
Msa0937350 MtrunA17_Chr5g0432611 64.634 246 63 5 8 229 6 251 8.48e-112 320
Msa0937350 MtrunA17_Chr3g0107311 65.714 245 60 4 6 229 13 254 9.12e-110 315
Msa0937350 MtrunA17_Chr3g0107291 64.898 245 62 4 6 229 19 260 1.45e-108 313
Msa0937350 MtrunA17_Chr7g0238681 64.000 225 58 4 28 229 32 256 4.71e-99 288
Msa0937350 MtrunA17_Chr5g0435311 59.438 249 77 5 4 229 59 306 1.74e-98 289
Msa0937350 MtrunA17_Chr4g0031621 57.937 252 83 4 1 229 5 256 1.01e-95 280
Msa0937350 MtrunA17_Chr2g0328261 62.222 225 62 4 28 229 34 258 4.68e-95 278
Msa0937350 MtrunA17_Chr1g0193631 60.000 225 65 6 28 227 30 254 5.86e-92 270
Msa0937350 MtrunA17_Chr7g0271001 55.020 249 86 7 1 224 1 248 2.26e-88 261
Msa0937350 MtrunA17_Chr1g0157061 56.585 205 72 4 40 227 34 238 2.15e-82 246
Msa0937350 MtrunA17_Chr7g0218741 50.800 250 100 6 1 228 3 251 2.49e-80 241
Msa0937350 MtrunA17_Chr7g0218751 56.109 221 76 4 28 227 28 248 3.46e-80 240
Msa0937350 MtrunA17_Chr8g0360041 55.455 220 77 4 28 226 31 250 6.42e-79 237
Msa0937350 MtrunA17_Chr4g0069711 52.252 222 84 6 28 227 61 282 1.32e-77 235
Msa0937350 MtrunA17_Chr7g0218761 56.373 204 75 3 38 227 6 209 7.16e-77 231
Msa0937350 MtrunA17_Chr4g0021561 46.275 255 110 6 1 229 3 256 2.21e-76 231
Msa0937350 MtrunA17_Chr5g0433841 50.442 226 90 4 28 231 41 266 1.05e-74 227
Msa0937350 MtrunA17_Chr8g0360721 55.224 201 76 3 38 224 15 215 4.93e-73 221
Msa0937350 MtrunA17_Chr3g0109801 47.845 232 91 5 28 229 53 284 6.03e-69 213
Msa0937350 MtrunA17_Chr5g0398271 50.000 224 87 6 28 227 37 259 3.27e-68 210
Msa0937350 MtrunA17_Chr4g0057091 46.748 246 105 6 6 225 11 256 3.55e-67 207
Msa0937350 MtrunA17_Chr4g0022841 50.862 116 57 0 111 226 1 116 1.82e-37 127
Msa0937350 MtrunA17_Chr2g0324181 53.465 101 47 0 129 229 17 117 2.64e-33 116
Msa0937350 MtrunA17_Chr2g0324191 42.177 147 60 6 6 129 8 152 6.08e-29 106
Msa0937350 MtrunA17_Chr4g0022851 50.000 124 39 6 1 101 1 124 6.80e-29 105
Msa0937350 MtrunA17_Chr8g0359981 62.500 80 23 4 57 129 2 81 2.65e-26 98.6
Msa0937350 MtrunA17_Chr2g0324221 32.889 225 122 8 28 227 35 255 5.15e-24 96.7
Msa0937350 MtrunA17_Chr2g0324201 31.746 252 143 9 1 227 6 253 1.65e-22 92.4
Msa0937350 MtrunA17_Chr4g0012801 32.599 227 119 9 25 224 39 258 2.36e-22 92.0
Msa0937350 MtrunA17_Chr4g0021641 31.878 229 127 9 28 231 41 265 7.93e-22 90.9
Msa0937350 MtrunA17_Chr8g0359971 50.649 77 37 1 150 225 1 77 3.11e-19 79.0
Msa0937350 MtrunA17_Chr7g0231221 29.952 207 119 9 40 224 67 269 3.61e-18 80.9
Msa0937350 MtrunA17_Chr7g0231211 30.973 226 119 11 28 224 47 264 4.44e-18 80.9
Msa0937350 MtrunA17_Chr1g0193571 59.259 54 22 0 174 227 4 57 3.40e-16 70.5
Msa0937350 MtrunA17_Chr4g0055601 29.148 223 133 10 28 227 28 248 9.29e-16 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0937350 AT2G03090.1 71.032 252 48 5 1 229 3 252 2.19e-123 350
Msa0937350 AT3G29030.1 77.982 218 34 3 28 231 38 255 3.88e-123 350
Msa0937350 AT1G26770.2 72.000 250 47 4 1 229 11 258 4.15e-121 345
Msa0937350 AT1G69530.2 70.800 250 51 4 1 229 1 249 4.86e-121 344
Msa0937350 AT1G69530.1 70.800 250 51 4 1 229 1 249 4.86e-121 344
Msa0937350 AT1G26770.1 72.000 250 47 4 1 229 1 248 5.24e-121 344
Msa0937350 AT1G69530.3 71.138 246 49 4 1 225 1 245 1.00e-119 342
Msa0937350 AT5G56320.1 63.347 251 70 4 1 229 1 251 1.71e-113 325
Msa0937350 AT5G56320.2 63.347 251 70 4 1 229 1 251 1.71e-113 325
Msa0937350 AT5G56320.3 63.347 251 70 4 1 229 1 251 3.81e-113 326
Msa0937350 AT2G40610.1 63.600 250 68 5 2 229 5 253 2.79e-109 315
Msa0937350 AT5G02260.1 65.333 225 55 4 28 229 32 256 1.28e-101 295
Msa0937350 AT5G05290.1 58.800 250 80 5 2 229 7 255 2.13e-101 295
Msa0937350 AT2G39700.1 61.317 243 70 5 11 229 13 255 8.56e-101 293
Msa0937350 AT1G69530.4 62.400 250 42 5 1 229 1 219 1.30e-100 291
Msa0937350 AT1G69530.5 65.652 230 55 5 1 209 1 227 9.49e-100 290
Msa0937350 AT2G37640.1 64.889 225 56 4 28 229 36 260 2.97e-99 290
Msa0937350 AT2G28950.1 59.766 256 75 6 1 229 1 255 4.05e-97 284
Msa0937350 AT3G55500.1 58.704 247 76 5 6 229 15 258 1.21e-96 283
Msa0937350 AT2G37640.2 65.534 206 55 3 40 229 30 235 2.20e-93 274
Msa0937350 AT4G01630.1 53.815 249 90 6 1 224 1 249 1.03e-90 268
Msa0937350 AT1G20190.1 58.850 226 69 5 24 225 22 247 4.37e-88 261
Msa0937350 AT5G39280.1 52.679 224 87 3 23 227 49 272 1.55e-81 245
Msa0937350 AT5G39300.1 52.679 224 87 3 23 227 50 273 5.43e-81 244
Msa0937350 AT5G39270.1 53.881 219 82 3 28 227 58 276 1.24e-80 243
Msa0937350 AT5G39290.1 52.968 219 84 3 28 227 58 276 1.04e-79 240
Msa0937350 AT1G20190.2 60.753 186 62 3 51 225 3 188 6.40e-79 235
Msa0937350 AT5G39260.1 48.780 246 102 4 6 227 14 259 3.23e-75 228
Msa0937350 AT5G39310.1 52.941 221 84 4 27 227 89 309 5.56e-75 229
Msa0937350 AT1G12560.1 50.413 242 97 5 6 224 14 255 7.23e-75 228
Msa0937350 AT3G15370.1 49.407 253 104 9 1 230 1 252 2.72e-73 223
Msa0937350 AT1G62980.1 51.786 224 83 6 28 227 31 253 1.16e-70 217
Msa0937350 AT4G38210.1 51.942 206 83 3 40 229 49 254 8.17e-70 214
Msa0937350 AT3G03220.1 47.768 224 95 4 28 229 40 263 1.82e-69 214
Msa0937350 AT3G15370.2 44.170 283 104 9 1 230 1 282 2.31e-68 212
Msa0937350 AT4G28250.1 33.603 247 134 10 7 227 15 257 2.47e-26 103
Msa0937350 AT2G20750.1 32.301 226 126 8 28 227 40 264 3.75e-25 100
Msa0937350 AT4G28250.2 32.520 246 132 10 7 227 15 251 4.65e-23 94.4
Msa0937350 AT1G65680.1 31.111 225 123 9 28 224 47 267 5.91e-22 91.7
Msa0937350 AT2G45110.1 31.707 205 117 8 40 224 52 253 1.58e-19 84.7
Msa0937350 AT1G65681.1 32.512 203 116 10 40 224 17 216 3.00e-19 83.2
Msa0937350 AT2G20750.2 33.939 165 84 6 28 168 40 203 8.75e-18 79.3
Msa0937350 AT4G28250.4 33.158 190 95 8 7 173 15 195 3.11e-16 75.1
Msa0937350 AT4G28250.3 35.329 167 76 8 25 168 33 190 5.64e-16 74.3
Msa0937350 AT4G17030.1 29.333 225 135 10 28 230 27 249 8.39e-15 71.6
Msa0937350 AT3G60570.1 26.423 246 149 8 6 224 11 251 1.25e-13 68.6
Msa0937350 AT3G45970.2 27.700 213 122 10 38 226 13 217 5.17e-13 66.6

Find 89 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCATATATGTTGAAATT+TGG 0.159759 6_3:+8609832 Msa0937350:three_prime_UTR
CTATTTACTCAAATGATTAA+TGG 0.166386 6_3:+8609757 Msa0937350:three_prime_UTR
TCCATGGCTATGGTAGAAAT+TGG 0.198703 6_3:+8607928 Msa0937350:CDS
TATATGCAAGATGCATTTAA+AGG 0.216975 6_3:-8609488 None:intergenic
CTAAACTAAGTCATAGTTAA+AGG 0.241625 6_3:+8609523 Msa0937350:three_prime_UTR
GAGCCATGGAGACACCATTT+TGG 0.252914 6_3:-8608631 None:intergenic
TTGAGACTTGACATATATTA+AGG 0.283614 6_3:-8609934 None:intergenic
AATGCACATGCAACCTTCTA+TGG 0.293252 6_3:+8607960 Msa0937350:CDS
CATCTAGGCTTTCTTGTTCT+AGG 0.294548 6_3:+8607879 Msa0937350:CDS
TCTAGTCCTTGAACCTTTGA+TGG 0.309672 6_3:-8609283 None:intergenic
ACTTAAACAATATTGTATAA+AGG 0.309997 6_3:-8610071 None:intergenic
GTAGAAGAAGAGGTGGAATA+AGG 0.318290 6_3:+8609181 Msa0937350:CDS
GCCCCACCCAGTTGGTCCTT+TGG 0.320692 6_3:+8609426 Msa0937350:CDS
GGCAAGCCATGTCAAGGAAT+TGG 0.336529 6_3:+8609307 Msa0937350:CDS
CAAGGAATTGGGGACAAAAT+TGG 0.338609 6_3:+8609319 Msa0937350:CDS
GCAAGCCATGTCAAGGAATT+GGG 0.340806 6_3:+8609308 Msa0937350:CDS
TCAGGTGGTGCATGTGGATA+TGG 0.358218 6_3:+8608499 Msa0937350:intron
TTGTTCCTGTTGTTTATAGA+AGG 0.359748 6_3:+8608770 Msa0937350:CDS
CCATGGCTATGGTAGAAATT+GGG 0.365156 6_3:+8607929 Msa0937350:CDS
AGCATCACTGCCACCATAGA+AGG 0.378869 6_3:-8607973 None:intergenic
GAGAGATCAAAATGGTGATT+AGG 0.389572 6_3:-8608706 None:intergenic
CAGAGCAACTCTTATTTGAA+TGG 0.396658 6_3:+8609342 Msa0937350:CDS
GTGACTAATGTTGGAGGTGC+TGG 0.409148 6_3:+8609243 Msa0937350:CDS
GGTTTGTCCAAAGGACCAAC+TGG 0.413288 6_3:-8609433 None:intergenic
TGAGCAATGTGTTGGAAAAC+AGG 0.417463 6_3:-8608733 None:intergenic
ATATGCAAGATGCATTTAAA+GGG 0.422567 6_3:-8609487 None:intergenic
TTAGTCCTTGTGACTAATGT+TGG 0.430036 6_3:+8609234 Msa0937350:CDS
TTTGTAGTCACCACGGGTAA+TGG 0.434090 6_3:+8609378 Msa0937350:CDS
AATTACCTTCTATAAACAAC+AGG 0.442368 6_3:-8608775 None:intergenic
TAGTATTCAACAAGTGTTAG+TGG 0.453336 6_3:+8609599 Msa0937350:three_prime_UTR
TCAAAGGTTCAAGGACTAGA+TGG 0.459280 6_3:+8609286 Msa0937350:CDS
ATCTCATATGTCCATGGCTA+TGG 0.469731 6_3:+8607918 Msa0937350:CDS
GGAATAAGGTTCACAATCAA+TGG 0.470548 6_3:+8609195 Msa0937350:CDS
CTTTATATTGAGCAATGTGT+TGG 0.478496 6_3:-8608741 None:intergenic
GCAAGATGCATTTAAAGGGT+TGG 0.482252 6_3:-8609483 None:intergenic
CTGTAGCCATCAAAGGTTCA+AGG 0.485843 6_3:+8609277 Msa0937350:CDS
TCCAAAGGACCAACTGGGTG+GGG 0.487484 6_3:-8609427 None:intergenic
TCCTTGATCTCATATGTCCA+TGG 0.488957 6_3:+8607912 Msa0937350:CDS
GTCCTTGTGACTAATGTTGG+AGG 0.495647 6_3:+8609237 Msa0937350:CDS
AATGTGCTAGTGACCCAAAA+TGG 0.497071 6_3:+8608617 Msa0937350:CDS
ACAAGTGTTAGTGGTGTGTC+TGG 0.502417 6_3:+8609608 Msa0937350:three_prime_UTR
TTAATATATGTCAAGTCTCA+AGG 0.504197 6_3:+8609936 Msa0937350:three_prime_UTR
CACATTGCTCAATATAAAGC+TGG 0.505971 6_3:+8608745 Msa0937350:CDS
AGGGTAAGGTGTAGAAGAAG+AGG 0.509744 6_3:+8609171 Msa0937350:intron
GCCACTAATTTCTGTCCACC+TGG 0.524649 6_3:+8608667 Msa0937350:CDS
GCCATGGACATATGAGATCA+AGG 0.531008 6_3:-8607913 None:intergenic
TTAATGTTGCCCCACCCAGT+TGG 0.531923 6_3:+8609418 Msa0937350:CDS
CTTTCATTTGTAGTCACCAC+GGG 0.534498 6_3:+8609372 Msa0937350:CDS
AGATCAAAATGGTGATTAGG+AGG 0.535090 6_3:-8608703 None:intergenic
TTCAACAATGGTTTGAGTTG+TGG 0.535378 6_3:+8608577 Msa0937350:CDS
CAGGTTGAGAGAGATCAAAA+TGG 0.536275 6_3:-8608714 None:intergenic
TTTAGCTGAGGATGATAAAG+GGG 0.537736 6_3:+8609970 Msa0937350:three_prime_UTR
TTTAAAGGGTTGGTTAGTAG+AGG 0.543847 6_3:-8609473 None:intergenic
ATTTCTGTCCACCTGGTGGT+TGG 0.547131 6_3:+8608674 Msa0937350:CDS
TCCTTTGGACAAACCTACAC+TGG 0.547722 6_3:+8609441 Msa0937350:CDS
GAGGAACTGCCTTCCAGTGT+AGG 0.551003 6_3:-8609454 None:intergenic
TTGTCCCCAATTCCTTGACA+TGG 0.556187 6_3:-8609313 None:intergenic
CCCAATTTCTACCATAGCCA+TGG 0.556965 6_3:-8607929 None:intergenic
GACCCAAAATGGTGTCTCCA+TGG 0.557622 6_3:+8608628 Msa0937350:CDS
GTCCAAAGGACCAACTGGGT+GGG 0.563335 6_3:-8609428 None:intergenic
GTAAGGTGTAGAAGAAGAGG+TGG 0.567385 6_3:+8609174 Msa0937350:CDS
GCTATGGTAGAAATTGGGGT+TGG 0.571222 6_3:+8607934 Msa0937350:CDS
TCCAGTGTAGGTTTGTCCAA+AGG 0.584012 6_3:-8609442 None:intergenic
TATGGAAACTTGTATAGTCA+AGG 0.585100 6_3:+8608517 Msa0937350:CDS
GTGCATTCTGTAGCCATCAA+AGG 0.587053 6_3:+8609270 Msa0937350:CDS
ACCAGGTGGACAGAAATTAG+TGG 0.590692 6_3:-8608668 None:intergenic
AGTACTGCATTATTCAACAA+TGG 0.595819 6_3:+8608565 Msa0937350:CDS
CAGTAACAACAATGGAGCCA+TGG 0.606178 6_3:-8608645 None:intergenic
GGAGGGTCACACCAACCACC+AGG 0.606947 6_3:-8608685 None:intergenic
CACCTCCAACATTAGTCACA+AGG 0.609149 6_3:-8609239 None:intergenic
TTGTATCTGATACGTGTCAG+TGG 0.609901 6_3:+8609552 Msa0937350:three_prime_UTR
AAAATTTCAGGTGGTGCATG+TGG 0.610538 6_3:+8608493 Msa0937350:intron
CTAGATGGCAAGCCATGTCA+AGG 0.612177 6_3:+8609301 Msa0937350:CDS
TGTCCAAAGGACCAACTGGG+TGG 0.615300 6_3:-8609429 None:intergenic
TAATATATGTCAAGTCTCAA+GGG 0.617040 6_3:+8609937 Msa0937350:three_prime_UTR
ACTAATTTCTGTCCACCTGG+TGG 0.617803 6_3:+8608670 Msa0937350:CDS
CAAGCCATGTCAAGGAATTG+GGG 0.622367 6_3:+8609309 Msa0937350:CDS
CATGGCTATGGTAGAAATTG+GGG 0.623894 6_3:+8607930 Msa0937350:CDS
TTGGACAAACCTACACTGGA+AGG 0.627049 6_3:+8609445 Msa0937350:CDS
TCTTTCATTTGTAGTCACCA+CGG 0.631684 6_3:+8609371 Msa0937350:CDS
ATTAGTGGCAGTAACAACAA+TGG 0.635904 6_3:-8608653 None:intergenic
GCACATGCAACCTTCTATGG+TGG 0.645972 6_3:+8607963 Msa0937350:CDS
TATATATGTCGATGTTGCGG+TGG 0.659986 6_3:-8609717 None:intergenic
AACTATATATGTCGATGTTG+CGG 0.662161 6_3:-8609720 None:intergenic
GATCAAAATGGTGATTAGGA+GGG 0.666299 6_3:-8608702 None:intergenic
GTTTGTCCAAAGGACCAACT+GGG 0.667033 6_3:-8609432 None:intergenic
GGGTCACACCAACCACCAGG+TGG 0.687412 6_3:-8608682 None:intergenic
TGTGTGTAGTATTCGACATG+TGG 0.718690 6_3:+8609654 Msa0937350:three_prime_UTR
AATACTATGACCATTACCCG+TGG 0.719067 6_3:-8609388 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATCAAATTTTAAAACTA+TGG - chr6_3:8608049-8608068 None:intergenic 10.0%
!!! TAGTTTTAAAATTTGATTAA+TGG + chr6_3:8608049-8608068 Msa0937350:intron 10.0%
!!! TTAATCAAATTTTAAAACTA+TGG - chr6_3:8608049-8608068 None:intergenic 10.0%
!!! TAGTTTTAAAATTTGATTAA+TGG + chr6_3:8608049-8608068 Msa0937350:intron 10.0%
!! AACAAAAATGTAAAAATTTC+AGG + chr6_3:8608481-8608500 Msa0937350:intron 15.0%
!!! TTAAGGAAGTAATTATTTTT+GGG - chr6_3:8609920-8609939 None:intergenic 15.0%
!!! ATTAAGGAAGTAATTATTTT+TGG - chr6_3:8609921-8609940 None:intergenic 15.0%
!! ACTTAAACAATATTGTATAA+AGG - chr6_3:8610074-8610093 None:intergenic 15.0%
!! AACAAAAATGTAAAAATTTC+AGG + chr6_3:8608481-8608500 Msa0937350:intron 15.0%
!!! TTAAGGAAGTAATTATTTTT+GGG - chr6_3:8609920-8609939 None:intergenic 15.0%
!!! ATTAAGGAAGTAATTATTTT+TGG - chr6_3:8609921-8609940 None:intergenic 15.0%
!! ACTTAAACAATATTGTATAA+AGG - chr6_3:8610074-8610093 None:intergenic 15.0%
!! AAAAATGTAAAAATTTCAGG+TGG + chr6_3:8608484-8608503 Msa0937350:intron 20.0%
!!! TGATTTTCTCAAAATATTAG+TGG - chr6_3:8608962-8608981 None:intergenic 20.0%
!!! TTAATCTTTTACTACTTGTT+TGG + chr6_3:8609104-8609123 Msa0937350:intron 20.0%
!! CTATTTACTCAAATGATTAA+TGG + chr6_3:8609757-8609776 Msa0937350:three_prime_UTR 20.0%
!!! TAAGGAAGTAATTATTTTTG+GGG - chr6_3:8609919-8609938 None:intergenic 20.0%
!! AAAAATGTAAAAATTTCAGG+TGG + chr6_3:8608484-8608503 Msa0937350:intron 20.0%
!!! TGATTTTCTCAAAATATTAG+TGG - chr6_3:8608962-8608981 None:intergenic 20.0%
!!! TTAATCTTTTACTACTTGTT+TGG + chr6_3:8609104-8609123 Msa0937350:intron 20.0%
!! CTATTTACTCAAATGATTAA+TGG + chr6_3:8609757-8609776 Msa0937350:three_prime_UTR 20.0%
!!! TAAGGAAGTAATTATTTTTG+GGG - chr6_3:8609919-8609938 None:intergenic 20.0%
!! TGTTGCAAACTTTTACATTA+TGG + chr6_3:8608075-8608094 Msa0937350:intron 25.0%
!! GTACAATATAAAGGATTTTG+AGG - chr6_3:8608142-8608161 None:intergenic 25.0%
! CAATTACGAGTACAATATAA+AGG - chr6_3:8608151-8608170 None:intergenic 25.0%
! AAAATTCTTAGCTATACTCA+TGG - chr6_3:8608197-8608216 None:intergenic 25.0%
!! AGTATAGCTAAGAATTTTGT+TGG + chr6_3:8608199-8608218 Msa0937350:intron 25.0%
! AATTACCTTCTATAAACAAC+AGG - chr6_3:8608778-8608797 None:intergenic 25.0%
! ATCCTTAACAATATGTGAAA+TGG + chr6_3:8608822-8608841 Msa0937350:intron 25.0%
! ATCCATTTCACATATTGTTA+AGG - chr6_3:8608827-8608846 None:intergenic 25.0%
! ATATGCAAGATGCATTTAAA+GGG - chr6_3:8609490-8609509 None:intergenic 25.0%
! TATATGCAAGATGCATTTAA+AGG - chr6_3:8609491-8609510 None:intergenic 25.0%
! CTAAACTAAGTCATAGTTAA+AGG + chr6_3:8609523-8609542 Msa0937350:three_prime_UTR 25.0%
! GCTTCATATATGTTGAAATT+TGG + chr6_3:8609832-8609851 Msa0937350:three_prime_UTR 25.0%
! TTGAGACTTGACATATATTA+AGG - chr6_3:8609937-8609956 None:intergenic 25.0%
! TTAATATATGTCAAGTCTCA+AGG + chr6_3:8609936-8609955 Msa0937350:three_prime_UTR 25.0%
! TAATATATGTCAAGTCTCAA+GGG + chr6_3:8609937-8609956 Msa0937350:three_prime_UTR 25.0%
!! TGTTGCAAACTTTTACATTA+TGG + chr6_3:8608075-8608094 Msa0937350:intron 25.0%
!! GTACAATATAAAGGATTTTG+AGG - chr6_3:8608142-8608161 None:intergenic 25.0%
! CAATTACGAGTACAATATAA+AGG - chr6_3:8608151-8608170 None:intergenic 25.0%
! AAAATTCTTAGCTATACTCA+TGG - chr6_3:8608197-8608216 None:intergenic 25.0%
!! AGTATAGCTAAGAATTTTGT+TGG + chr6_3:8608199-8608218 Msa0937350:intron 25.0%
! AATTACCTTCTATAAACAAC+AGG - chr6_3:8608778-8608797 None:intergenic 25.0%
! ATCCTTAACAATATGTGAAA+TGG + chr6_3:8608822-8608841 Msa0937350:intron 25.0%
! ATCCATTTCACATATTGTTA+AGG - chr6_3:8608827-8608846 None:intergenic 25.0%
! ATATGCAAGATGCATTTAAA+GGG - chr6_3:8609490-8609509 None:intergenic 25.0%
! TATATGCAAGATGCATTTAA+AGG - chr6_3:8609491-8609510 None:intergenic 25.0%
! CTAAACTAAGTCATAGTTAA+AGG + chr6_3:8609523-8609542 Msa0937350:three_prime_UTR 25.0%
! GCTTCATATATGTTGAAATT+TGG + chr6_3:8609832-8609851 Msa0937350:three_prime_UTR 25.0%
! TTGAGACTTGACATATATTA+AGG - chr6_3:8609937-8609956 None:intergenic 25.0%
! TTAATATATGTCAAGTCTCA+AGG + chr6_3:8609936-8609955 Msa0937350:three_prime_UTR 25.0%
! TAATATATGTCAAGTCTCAA+GGG + chr6_3:8609937-8609956 Msa0937350:three_prime_UTR 25.0%
TAGTTCGGCTATTAAAACAA+TGG - chr6_3:8608272-8608291 None:intergenic 30.0%
! CTAACAAATGTGTTTGCTAA+TGG + chr6_3:8608452-8608471 Msa0937350:intron 30.0%
TATGGAAACTTGTATAGTCA+AGG + chr6_3:8608517-8608536 Msa0937350:CDS 30.0%
AACTTGTATAGTCAAGGTTA+TGG + chr6_3:8608523-8608542 Msa0937350:intron 30.0%
ACTTGTATAGTCAAGGTTAT+GGG + chr6_3:8608524-8608543 Msa0937350:intron 30.0%
AGTACTGCATTATTCAACAA+TGG + chr6_3:8608565-8608584 Msa0937350:CDS 30.0%
CTTTATATTGAGCAATGTGT+TGG - chr6_3:8608744-8608763 None:intergenic 30.0%
! TTGTTCCTGTTGTTTATAGA+AGG + chr6_3:8608770-8608789 Msa0937350:CDS 30.0%
TCACATATTGTTAAGGATGA+AGG - chr6_3:8608820-8608839 None:intergenic 30.0%
CTATGTAACTATATGAAGCA+CGG + chr6_3:8608902-8608921 Msa0937350:intron 30.0%
TCTCAAAATATTAGTGGTGT+TGG - chr6_3:8608956-8608975 None:intergenic 30.0%
GTAATTATATGTGTCAGTGT+CGG + chr6_3:8608993-8609012 Msa0937350:intron 30.0%
ACTTACATATCTATGAAGCA+AGG - chr6_3:8609065-8609084 None:intergenic 30.0%
AGAAAACAAAGTTAGCATCA+TGG - chr6_3:8609130-8609149 None:intergenic 30.0%
!!! AACTTTGTTTTCTTCATGCA+TGG + chr6_3:8609137-8609156 Msa0937350:intron 30.0%
!! ATGCATGGTTTTTGATTGAA+GGG + chr6_3:8609152-8609171 Msa0937350:intron 30.0%
TAGTATTCAACAAGTGTTAG+TGG + chr6_3:8609599-8609618 Msa0937350:three_prime_UTR 30.0%
AACTATATATGTCGATGTTG+CGG - chr6_3:8609723-8609742 None:intergenic 30.0%
!!! TTTTTAGCTGAGGATGATAA+AGG + chr6_3:8609968-8609987 Msa0937350:three_prime_UTR 30.0%
!! TTTTAGCTGAGGATGATAAA+GGG + chr6_3:8609969-8609988 Msa0937350:three_prime_UTR 30.0%
TAGTTCGGCTATTAAAACAA+TGG - chr6_3:8608272-8608291 None:intergenic 30.0%
! CTAACAAATGTGTTTGCTAA+TGG + chr6_3:8608452-8608471 Msa0937350:intron 30.0%
TATGGAAACTTGTATAGTCA+AGG + chr6_3:8608517-8608536 Msa0937350:CDS 30.0%
AACTTGTATAGTCAAGGTTA+TGG + chr6_3:8608523-8608542 Msa0937350:intron 30.0%
ACTTGTATAGTCAAGGTTAT+GGG + chr6_3:8608524-8608543 Msa0937350:intron 30.0%
AGTACTGCATTATTCAACAA+TGG + chr6_3:8608565-8608584 Msa0937350:CDS 30.0%
CTTTATATTGAGCAATGTGT+TGG - chr6_3:8608744-8608763 None:intergenic 30.0%
! TTGTTCCTGTTGTTTATAGA+AGG + chr6_3:8608770-8608789 Msa0937350:CDS 30.0%
TCACATATTGTTAAGGATGA+AGG - chr6_3:8608820-8608839 None:intergenic 30.0%
CTATGTAACTATATGAAGCA+CGG + chr6_3:8608902-8608921 Msa0937350:intron 30.0%
TCTCAAAATATTAGTGGTGT+TGG - chr6_3:8608956-8608975 None:intergenic 30.0%
GTAATTATATGTGTCAGTGT+CGG + chr6_3:8608993-8609012 Msa0937350:intron 30.0%
ACTTACATATCTATGAAGCA+AGG - chr6_3:8609065-8609084 None:intergenic 30.0%
AGAAAACAAAGTTAGCATCA+TGG - chr6_3:8609130-8609149 None:intergenic 30.0%
!!! AACTTTGTTTTCTTCATGCA+TGG + chr6_3:8609137-8609156 Msa0937350:intron 30.0%
!! ATGCATGGTTTTTGATTGAA+GGG + chr6_3:8609152-8609171 Msa0937350:intron 30.0%
TAGTATTCAACAAGTGTTAG+TGG + chr6_3:8609599-8609618 Msa0937350:three_prime_UTR 30.0%
AACTATATATGTCGATGTTG+CGG - chr6_3:8609723-8609742 None:intergenic 30.0%
!!! TTTTTAGCTGAGGATGATAA+AGG + chr6_3:8609968-8609987 Msa0937350:three_prime_UTR 30.0%
!! TTTTAGCTGAGGATGATAAA+GGG + chr6_3:8609969-8609988 Msa0937350:three_prime_UTR 30.0%
TATGCTCTAGCTATACTTAG+TGG + chr6_3:8608238-8608257 Msa0937350:intron 35.0%
CCTTTACAATGACTCGATTA+GGG - chr6_3:8608362-8608381 None:intergenic 35.0%
CCTAATCGAGTCATTGTAAA+GGG + chr6_3:8608360-8608379 Msa0937350:intron 35.0%
TCATTGTAAAGGGTAGTTCA+AGG + chr6_3:8608370-8608389 Msa0937350:intron 35.0%
!! TTCAACAATGGTTTGAGTTG+TGG + chr6_3:8608577-8608596 Msa0937350:CDS 35.0%
ATTAGTGGCAGTAACAACAA+TGG - chr6_3:8608656-8608675 None:intergenic 35.0%
GATCAAAATGGTGATTAGGA+GGG - chr6_3:8608705-8608724 None:intergenic 35.0%
AGATCAAAATGGTGATTAGG+AGG - chr6_3:8608706-8608725 None:intergenic 35.0%
GAGAGATCAAAATGGTGATT+AGG - chr6_3:8608709-8608728 None:intergenic 35.0%
CACATTGCTCAATATAAAGC+TGG + chr6_3:8608745-8608764 Msa0937350:CDS 35.0%
AACTATATGAAGCACGGATA+CGG + chr6_3:8608908-8608927 Msa0937350:intron 35.0%
!! CATGCATGGTTTTTGATTGA+AGG + chr6_3:8609151-8609170 Msa0937350:intron 35.0%
!! TGGTTTTTGATTGAAGGGTA+AGG + chr6_3:8609157-8609176 Msa0937350:intron 35.0%
GGAATAAGGTTCACAATCAA+TGG + chr6_3:8609195-8609214 Msa0937350:CDS 35.0%
TTAGTCCTTGTGACTAATGT+TGG + chr6_3:8609234-8609253 Msa0937350:CDS 35.0%
! CAGAGCAACTCTTATTTGAA+TGG + chr6_3:8609342-8609361 Msa0937350:CDS 35.0%
TCTTTCATTTGTAGTCACCA+CGG + chr6_3:8609371-8609390 Msa0937350:CDS 35.0%
!! TTTAAAGGGTTGGTTAGTAG+AGG - chr6_3:8609476-8609495 None:intergenic 35.0%
!!! GGTACTTTAGTTTTTAGCTG+AGG + chr6_3:8609958-8609977 Msa0937350:three_prime_UTR 35.0%
TTTAGCTGAGGATGATAAAG+GGG + chr6_3:8609970-8609989 Msa0937350:three_prime_UTR 35.0%
TATGCTCTAGCTATACTTAG+TGG + chr6_3:8608238-8608257 Msa0937350:intron 35.0%
CCTTTACAATGACTCGATTA+GGG - chr6_3:8608362-8608381 None:intergenic 35.0%
CCTAATCGAGTCATTGTAAA+GGG + chr6_3:8608360-8608379 Msa0937350:intron 35.0%
TCATTGTAAAGGGTAGTTCA+AGG + chr6_3:8608370-8608389 Msa0937350:intron 35.0%
!! TTCAACAATGGTTTGAGTTG+TGG + chr6_3:8608577-8608596 Msa0937350:CDS 35.0%
ATTAGTGGCAGTAACAACAA+TGG - chr6_3:8608656-8608675 None:intergenic 35.0%
GATCAAAATGGTGATTAGGA+GGG - chr6_3:8608705-8608724 None:intergenic 35.0%
AGATCAAAATGGTGATTAGG+AGG - chr6_3:8608706-8608725 None:intergenic 35.0%
GAGAGATCAAAATGGTGATT+AGG - chr6_3:8608709-8608728 None:intergenic 35.0%
CACATTGCTCAATATAAAGC+TGG + chr6_3:8608745-8608764 Msa0937350:CDS 35.0%
AACTATATGAAGCACGGATA+CGG + chr6_3:8608908-8608927 Msa0937350:intron 35.0%
!! CATGCATGGTTTTTGATTGA+AGG + chr6_3:8609151-8609170 Msa0937350:intron 35.0%
!! TGGTTTTTGATTGAAGGGTA+AGG + chr6_3:8609157-8609176 Msa0937350:intron 35.0%
GGAATAAGGTTCACAATCAA+TGG + chr6_3:8609195-8609214 Msa0937350:CDS 35.0%
TTAGTCCTTGTGACTAATGT+TGG + chr6_3:8609234-8609253 Msa0937350:CDS 35.0%
! CAGAGCAACTCTTATTTGAA+TGG + chr6_3:8609342-8609361 Msa0937350:CDS 35.0%
TCTTTCATTTGTAGTCACCA+CGG + chr6_3:8609371-8609390 Msa0937350:CDS 35.0%
!! TTTAAAGGGTTGGTTAGTAG+AGG - chr6_3:8609476-8609495 None:intergenic 35.0%
!!! GGTACTTTAGTTTTTAGCTG+AGG + chr6_3:8609958-8609977 Msa0937350:three_prime_UTR 35.0%
TTTAGCTGAGGATGATAAAG+GGG + chr6_3:8609970-8609989 Msa0937350:three_prime_UTR 35.0%
CATCTAGGCTTTCTTGTTCT+AGG + chr6_3:8607879-8607898 Msa0937350:CDS 40.0%
TCCTTGATCTCATATGTCCA+TGG + chr6_3:8607912-8607931 Msa0937350:CDS 40.0%
ATCTCATATGTCCATGGCTA+TGG + chr6_3:8607918-8607937 Msa0937350:CDS 40.0%
TCCATGGCTATGGTAGAAAT+TGG + chr6_3:8607928-8607947 Msa0937350:CDS 40.0%
CCATGGCTATGGTAGAAATT+GGG + chr6_3:8607929-8607948 Msa0937350:CDS 40.0%
CATGGCTATGGTAGAAATTG+GGG + chr6_3:8607930-8607949 Msa0937350:CDS 40.0%
AATGCACATGCAACCTTCTA+TGG + chr6_3:8607960-8607979 Msa0937350:CDS 40.0%
GTTGCAGTTCGAGCAATTTA+AGG - chr6_3:8608335-8608354 None:intergenic 40.0%
CCCTAATCGAGTCATTGTAA+AGG + chr6_3:8608359-8608378 Msa0937350:intron 40.0%
CCCTTTACAATGACTCGATT+AGG - chr6_3:8608363-8608382 None:intergenic 40.0%
TTCAACTTGGTTGAACTGTC+TGG + chr6_3:8608393-8608412 Msa0937350:intron 40.0%
! AAAATTTCAGGTGGTGCATG+TGG + chr6_3:8608493-8608512 Msa0937350:intron 40.0%
AATGTGCTAGTGACCCAAAA+TGG + chr6_3:8608617-8608636 Msa0937350:CDS 40.0%
! CAGGTTGAGAGAGATCAAAA+TGG - chr6_3:8608717-8608736 None:intergenic 40.0%
TGAGCAATGTGTTGGAAAAC+AGG - chr6_3:8608736-8608755 None:intergenic 40.0%
GTAGAAGAAGAGGTGGAATA+AGG + chr6_3:8609181-8609200 Msa0937350:CDS 40.0%
TCTAGTCCTTGAACCTTTGA+TGG - chr6_3:8609286-8609305 None:intergenic 40.0%
TCAAAGGTTCAAGGACTAGA+TGG + chr6_3:8609286-8609305 Msa0937350:CDS 40.0%
CAAGGAATTGGGGACAAAAT+TGG + chr6_3:8609319-8609338 Msa0937350:CDS 40.0%
CTTTCATTTGTAGTCACCAC+GGG + chr6_3:8609372-8609391 Msa0937350:CDS 40.0%
AATACTATGACCATTACCCG+TGG - chr6_3:8609391-8609410 None:intergenic 40.0%
GCAAGATGCATTTAAAGGGT+TGG - chr6_3:8609486-8609505 None:intergenic 40.0%
TTGTATCTGATACGTGTCAG+TGG + chr6_3:8609552-8609571 Msa0937350:three_prime_UTR 40.0%
TGTGTGTAGTATTCGACATG+TGG + chr6_3:8609654-8609673 Msa0937350:three_prime_UTR 40.0%
TATATATGTCGATGTTGCGG+TGG - chr6_3:8609720-8609739 None:intergenic 40.0%
CATCTAGGCTTTCTTGTTCT+AGG + chr6_3:8607879-8607898 Msa0937350:CDS 40.0%
TCCTTGATCTCATATGTCCA+TGG + chr6_3:8607912-8607931 Msa0937350:CDS 40.0%
ATCTCATATGTCCATGGCTA+TGG + chr6_3:8607918-8607937 Msa0937350:CDS 40.0%
TCCATGGCTATGGTAGAAAT+TGG + chr6_3:8607928-8607947 Msa0937350:CDS 40.0%
CCATGGCTATGGTAGAAATT+GGG + chr6_3:8607929-8607948 Msa0937350:CDS 40.0%
CATGGCTATGGTAGAAATTG+GGG + chr6_3:8607930-8607949 Msa0937350:CDS 40.0%
AATGCACATGCAACCTTCTA+TGG + chr6_3:8607960-8607979 Msa0937350:CDS 40.0%
GTTGCAGTTCGAGCAATTTA+AGG - chr6_3:8608335-8608354 None:intergenic 40.0%
CCCTAATCGAGTCATTGTAA+AGG + chr6_3:8608359-8608378 Msa0937350:intron 40.0%
CCCTTTACAATGACTCGATT+AGG - chr6_3:8608363-8608382 None:intergenic 40.0%
TTCAACTTGGTTGAACTGTC+TGG + chr6_3:8608393-8608412 Msa0937350:intron 40.0%
! AAAATTTCAGGTGGTGCATG+TGG + chr6_3:8608493-8608512 Msa0937350:intron 40.0%
AATGTGCTAGTGACCCAAAA+TGG + chr6_3:8608617-8608636 Msa0937350:CDS 40.0%
! CAGGTTGAGAGAGATCAAAA+TGG - chr6_3:8608717-8608736 None:intergenic 40.0%
TGAGCAATGTGTTGGAAAAC+AGG - chr6_3:8608736-8608755 None:intergenic 40.0%
GTAGAAGAAGAGGTGGAATA+AGG + chr6_3:8609181-8609200 Msa0937350:CDS 40.0%
TCTAGTCCTTGAACCTTTGA+TGG - chr6_3:8609286-8609305 None:intergenic 40.0%
TCAAAGGTTCAAGGACTAGA+TGG + chr6_3:8609286-8609305 Msa0937350:CDS 40.0%
CAAGGAATTGGGGACAAAAT+TGG + chr6_3:8609319-8609338 Msa0937350:CDS 40.0%
CTTTCATTTGTAGTCACCAC+GGG + chr6_3:8609372-8609391 Msa0937350:CDS 40.0%
AATACTATGACCATTACCCG+TGG - chr6_3:8609391-8609410 None:intergenic 40.0%
GCAAGATGCATTTAAAGGGT+TGG - chr6_3:8609486-8609505 None:intergenic 40.0%
TTGTATCTGATACGTGTCAG+TGG + chr6_3:8609552-8609571 Msa0937350:three_prime_UTR 40.0%
TGTGTGTAGTATTCGACATG+TGG + chr6_3:8609654-8609673 Msa0937350:three_prime_UTR 40.0%
TATATATGTCGATGTTGCGG+TGG - chr6_3:8609720-8609739 None:intergenic 40.0%
GCCATGGACATATGAGATCA+AGG - chr6_3:8607916-8607935 None:intergenic 45.0%
CCCAATTTCTACCATAGCCA+TGG - chr6_3:8607932-8607951 None:intergenic 45.0%
GCTATGGTAGAAATTGGGGT+TGG + chr6_3:8607934-8607953 Msa0937350:CDS 45.0%
AGTGATGCTTCTGGCACAAT+GGG + chr6_3:8607987-8608006 Msa0937350:intron 45.0%
ATTGCGTTTGCATGTCGTTG+TGG + chr6_3:8608113-8608132 Msa0937350:intron 45.0%
AGCCGAACTAGACATCAAAC+CGG + chr6_3:8608282-8608301 Msa0937350:intron 45.0%
!! CACCGGTTTGATGTCTAGTT+CGG - chr6_3:8608287-8608306 None:intergenic 45.0%
AACTAGACATCAAACCGGTG+AGG + chr6_3:8608287-8608306 Msa0937350:intron 45.0%
CCATGAATAAGAAGCCTCAC+CGG - chr6_3:8608304-8608323 None:intergenic 45.0%
GGGTAGTTCAAGGTTCAACT+TGG + chr6_3:8608380-8608399 Msa0937350:intron 45.0%
! AGCCATGGAGACACCATTTT+GGG - chr6_3:8608633-8608652 None:intergenic 45.0%
CAGTAACAACAATGGAGCCA+TGG - chr6_3:8608648-8608667 None:intergenic 45.0%
ACCAGGTGGACAGAAATTAG+TGG - chr6_3:8608671-8608690 None:intergenic 45.0%
ACTAATTTCTGTCCACCTGG+TGG + chr6_3:8608670-8608689 Msa0937350:CDS 45.0%
! GATTAGTTGTGTCCTGGTGT+CGG - chr6_3:8609032-8609051 None:intergenic 45.0%
TATGAAGCAAGGACACTCCT+CGG - chr6_3:8609054-8609073 None:intergenic 45.0%
AGGGTAAGGTGTAGAAGAAG+AGG + chr6_3:8609171-8609190 Msa0937350:intron 45.0%
GTAAGGTGTAGAAGAAGAGG+TGG + chr6_3:8609174-8609193 Msa0937350:CDS 45.0%
GTCCTTGTGACTAATGTTGG+AGG + chr6_3:8609237-8609256 Msa0937350:CDS 45.0%
CACCTCCAACATTAGTCACA+AGG - chr6_3:8609242-8609261 None:intergenic 45.0%
GTGCATTCTGTAGCCATCAA+AGG + chr6_3:8609270-8609289 Msa0937350:CDS 45.0%
CTGTAGCCATCAAAGGTTCA+AGG + chr6_3:8609277-8609296 Msa0937350:CDS 45.0%
GCAAGCCATGTCAAGGAATT+GGG + chr6_3:8609308-8609327 Msa0937350:CDS 45.0%
CAAGCCATGTCAAGGAATTG+GGG + chr6_3:8609309-8609328 Msa0937350:CDS 45.0%
TTGTCCCCAATTCCTTGACA+TGG - chr6_3:8609316-8609335 None:intergenic 45.0%
TTTGTAGTCACCACGGGTAA+TGG + chr6_3:8609378-8609397 Msa0937350:CDS 45.0%
GTTTGTCCAAAGGACCAACT+GGG - chr6_3:8609435-8609454 None:intergenic 45.0%
TCCTTTGGACAAACCTACAC+TGG + chr6_3:8609441-8609460 Msa0937350:CDS 45.0%
TCCAGTGTAGGTTTGTCCAA+AGG - chr6_3:8609445-8609464 None:intergenic 45.0%
TTGGACAAACCTACACTGGA+AGG + chr6_3:8609445-8609464 Msa0937350:CDS 45.0%
ACAAGTGTTAGTGGTGTGTC+TGG + chr6_3:8609608-8609627 Msa0937350:three_prime_UTR 45.0%
GCCATGGACATATGAGATCA+AGG - chr6_3:8607916-8607935 None:intergenic 45.0%
CCCAATTTCTACCATAGCCA+TGG - chr6_3:8607932-8607951 None:intergenic 45.0%
GCTATGGTAGAAATTGGGGT+TGG + chr6_3:8607934-8607953 Msa0937350:CDS 45.0%
AGTGATGCTTCTGGCACAAT+GGG + chr6_3:8607987-8608006 Msa0937350:intron 45.0%
ATTGCGTTTGCATGTCGTTG+TGG + chr6_3:8608113-8608132 Msa0937350:intron 45.0%
AGCCGAACTAGACATCAAAC+CGG + chr6_3:8608282-8608301 Msa0937350:intron 45.0%
!! CACCGGTTTGATGTCTAGTT+CGG - chr6_3:8608287-8608306 None:intergenic 45.0%
AACTAGACATCAAACCGGTG+AGG + chr6_3:8608287-8608306 Msa0937350:intron 45.0%
CCATGAATAAGAAGCCTCAC+CGG - chr6_3:8608304-8608323 None:intergenic 45.0%
GGGTAGTTCAAGGTTCAACT+TGG + chr6_3:8608380-8608399 Msa0937350:intron 45.0%
! AGCCATGGAGACACCATTTT+GGG - chr6_3:8608633-8608652 None:intergenic 45.0%
CAGTAACAACAATGGAGCCA+TGG - chr6_3:8608648-8608667 None:intergenic 45.0%
ACCAGGTGGACAGAAATTAG+TGG - chr6_3:8608671-8608690 None:intergenic 45.0%
ACTAATTTCTGTCCACCTGG+TGG + chr6_3:8608670-8608689 Msa0937350:CDS 45.0%
! GATTAGTTGTGTCCTGGTGT+CGG - chr6_3:8609032-8609051 None:intergenic 45.0%
TATGAAGCAAGGACACTCCT+CGG - chr6_3:8609054-8609073 None:intergenic 45.0%
AGGGTAAGGTGTAGAAGAAG+AGG + chr6_3:8609171-8609190 Msa0937350:intron 45.0%
GTAAGGTGTAGAAGAAGAGG+TGG + chr6_3:8609174-8609193 Msa0937350:CDS 45.0%
GTCCTTGTGACTAATGTTGG+AGG + chr6_3:8609237-8609256 Msa0937350:CDS 45.0%
CACCTCCAACATTAGTCACA+AGG - chr6_3:8609242-8609261 None:intergenic 45.0%
GTGCATTCTGTAGCCATCAA+AGG + chr6_3:8609270-8609289 Msa0937350:CDS 45.0%
CTGTAGCCATCAAAGGTTCA+AGG + chr6_3:8609277-8609296 Msa0937350:CDS 45.0%
GCAAGCCATGTCAAGGAATT+GGG + chr6_3:8609308-8609327 Msa0937350:CDS 45.0%
CAAGCCATGTCAAGGAATTG+GGG + chr6_3:8609309-8609328 Msa0937350:CDS 45.0%
TTGTCCCCAATTCCTTGACA+TGG - chr6_3:8609316-8609335 None:intergenic 45.0%
TTTGTAGTCACCACGGGTAA+TGG + chr6_3:8609378-8609397 Msa0937350:CDS 45.0%
GTTTGTCCAAAGGACCAACT+GGG - chr6_3:8609435-8609454 None:intergenic 45.0%
TCCTTTGGACAAACCTACAC+TGG + chr6_3:8609441-8609460 Msa0937350:CDS 45.0%
TCCAGTGTAGGTTTGTCCAA+AGG - chr6_3:8609445-8609464 None:intergenic 45.0%
TTGGACAAACCTACACTGGA+AGG + chr6_3:8609445-8609464 Msa0937350:CDS 45.0%
ACAAGTGTTAGTGGTGTGTC+TGG + chr6_3:8609608-8609627 Msa0937350:three_prime_UTR 45.0%
GCACATGCAACCTTCTATGG+TGG + chr6_3:8607963-8607982 Msa0937350:CDS 50.0%
AGCATCACTGCCACCATAGA+AGG - chr6_3:8607976-8607995 None:intergenic 50.0%
TATGGTGGCAGTGATGCTTC+TGG + chr6_3:8607978-8607997 Msa0937350:intron 50.0%
CAGTGATGCTTCTGGCACAA+TGG + chr6_3:8607986-8608005 Msa0937350:intron 50.0%
CCGGTGAGGCTTCTTATTCA+TGG + chr6_3:8608301-8608320 Msa0937350:intron 50.0%
! ACTGTCTGGTTCGCTAGCTT+CGG + chr6_3:8608407-8608426 Msa0937350:intron 50.0%
TCAGGTGGTGCATGTGGATA+TGG + chr6_3:8608499-8608518 Msa0937350:intron 50.0%
GACCCAAAATGGTGTCTCCA+TGG + chr6_3:8608628-8608647 Msa0937350:CDS 50.0%
! GAGCCATGGAGACACCATTT+TGG - chr6_3:8608634-8608653 None:intergenic 50.0%
GCCACTAATTTCTGTCCACC+TGG + chr6_3:8608667-8608686 Msa0937350:CDS 50.0%
ATTTCTGTCCACCTGGTGGT+TGG + chr6_3:8608674-8608693 Msa0937350:CDS 50.0%
ACCAGGACACAACTAATCCG+AGG + chr6_3:8609034-8609053 Msa0937350:intron 50.0%
!! TCCTCGGATTAGTTGTGTCC+TGG - chr6_3:8609038-8609057 None:intergenic 50.0%
! GTGACTAATGTTGGAGGTGC+TGG + chr6_3:8609243-8609262 Msa0937350:CDS 50.0%
CTAGATGGCAAGCCATGTCA+AGG + chr6_3:8609301-8609320 Msa0937350:CDS 50.0%
GGCAAGCCATGTCAAGGAAT+TGG + chr6_3:8609307-8609326 Msa0937350:CDS 50.0%
TTAATGTTGCCCCACCCAGT+TGG + chr6_3:8609418-8609437 Msa0937350:CDS 50.0%
GGTTTGTCCAAAGGACCAAC+TGG - chr6_3:8609436-8609455 None:intergenic 50.0%
GCACATGCAACCTTCTATGG+TGG + chr6_3:8607963-8607982 Msa0937350:CDS 50.0%
AGCATCACTGCCACCATAGA+AGG - chr6_3:8607976-8607995 None:intergenic 50.0%
TATGGTGGCAGTGATGCTTC+TGG + chr6_3:8607978-8607997 Msa0937350:intron 50.0%
CAGTGATGCTTCTGGCACAA+TGG + chr6_3:8607986-8608005 Msa0937350:intron 50.0%
CCGGTGAGGCTTCTTATTCA+TGG + chr6_3:8608301-8608320 Msa0937350:intron 50.0%
! ACTGTCTGGTTCGCTAGCTT+CGG + chr6_3:8608407-8608426 Msa0937350:intron 50.0%
TCAGGTGGTGCATGTGGATA+TGG + chr6_3:8608499-8608518 Msa0937350:intron 50.0%
GACCCAAAATGGTGTCTCCA+TGG + chr6_3:8608628-8608647 Msa0937350:CDS 50.0%
! GAGCCATGGAGACACCATTT+TGG - chr6_3:8608634-8608653 None:intergenic 50.0%
GCCACTAATTTCTGTCCACC+TGG + chr6_3:8608667-8608686 Msa0937350:CDS 50.0%
ATTTCTGTCCACCTGGTGGT+TGG + chr6_3:8608674-8608693 Msa0937350:CDS 50.0%
ACCAGGACACAACTAATCCG+AGG + chr6_3:8609034-8609053 Msa0937350:intron 50.0%
!! TCCTCGGATTAGTTGTGTCC+TGG - chr6_3:8609038-8609057 None:intergenic 50.0%
! GTGACTAATGTTGGAGGTGC+TGG + chr6_3:8609243-8609262 Msa0937350:CDS 50.0%
CTAGATGGCAAGCCATGTCA+AGG + chr6_3:8609301-8609320 Msa0937350:CDS 50.0%
GGCAAGCCATGTCAAGGAAT+TGG + chr6_3:8609307-8609326 Msa0937350:CDS 50.0%
TTAATGTTGCCCCACCCAGT+TGG + chr6_3:8609418-8609437 Msa0937350:CDS 50.0%
GGTTTGTCCAAAGGACCAAC+TGG - chr6_3:8609436-8609455 None:intergenic 50.0%
GCACGGATACGGACACAACA+CGG + chr6_3:8608919-8608938 Msa0937350:intron 55.0%
TCCAAAGGACCAACTGGGTG+GGG - chr6_3:8609430-8609449 None:intergenic 55.0%
GTCCAAAGGACCAACTGGGT+GGG - chr6_3:8609431-8609450 None:intergenic 55.0%
TGTCCAAAGGACCAACTGGG+TGG - chr6_3:8609432-8609451 None:intergenic 55.0%
GAGGAACTGCCTTCCAGTGT+AGG - chr6_3:8609457-8609476 None:intergenic 55.0%
GCACGGATACGGACACAACA+CGG + chr6_3:8608919-8608938 Msa0937350:intron 55.0%
TCCAAAGGACCAACTGGGTG+GGG - chr6_3:8609430-8609449 None:intergenic 55.0%
GTCCAAAGGACCAACTGGGT+GGG - chr6_3:8609431-8609450 None:intergenic 55.0%
TGTCCAAAGGACCAACTGGG+TGG - chr6_3:8609432-8609451 None:intergenic 55.0%
GAGGAACTGCCTTCCAGTGT+AGG - chr6_3:8609457-8609476 None:intergenic 55.0%
CACGACATGTGTCCGACACC+AGG + chr6_3:8609017-8609036 Msa0937350:intron 60.0%
CACGACATGTGTCCGACACC+AGG + chr6_3:8609017-8609036 Msa0937350:intron 60.0%
GGGTCACACCAACCACCAGG+TGG - chr6_3:8608685-8608704 None:intergenic 65.0%
GGAGGGTCACACCAACCACC+AGG - chr6_3:8608688-8608707 None:intergenic 65.0%
GCCCCACCCAGTTGGTCCTT+TGG + chr6_3:8609426-8609445 Msa0937350:CDS 65.0%
GGGTCACACCAACCACCAGG+TGG - chr6_3:8608685-8608704 None:intergenic 65.0%
GGAGGGTCACACCAACCACC+AGG - chr6_3:8608688-8608707 None:intergenic 65.0%
GCCCCACCCAGTTGGTCCTT+TGG + chr6_3:8609426-8609445 Msa0937350:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 8607868 8610188 8607868 ID=Msa0937350;Name=Msa0937350
chr6_3 mRNA 8607868 8610188 8607868 ID=Msa0937350-mRNA-1;Parent=Msa0937350;Name=Msa0937350-mRNA-1;_AED=0.06;_eAED=0.07;_QI=5|0.33|0.25|1|0.33|0.25|4|706|231
chr6_3 exon 8607868 8607987 8607868 ID=Msa0937350-mRNA-1:exon:2763;Parent=Msa0937350-mRNA-1
chr6_3 exon 8608503 8608538 8608503 ID=Msa0937350-mRNA-1:exon:2764;Parent=Msa0937350-mRNA-1
chr6_3 exon 8608557 8608791 8608557 ID=Msa0937350-mRNA-1:exon:2765;Parent=Msa0937350-mRNA-1
chr6_3 exon 8609173 8610188 8609173 ID=Msa0937350-mRNA-1:exon:2766;Parent=Msa0937350-mRNA-1
chr6_3 five_prime_UTR 8607868 8607872 8607868 ID=Msa0937350-mRNA-1:five_prime_utr;Parent=Msa0937350-mRNA-1
chr6_3 CDS 8607873 8607987 8607873 ID=Msa0937350-mRNA-1:cds;Parent=Msa0937350-mRNA-1
chr6_3 CDS 8608503 8608538 8608503 ID=Msa0937350-mRNA-1:cds;Parent=Msa0937350-mRNA-1
chr6_3 CDS 8608557 8608791 8608557 ID=Msa0937350-mRNA-1:cds;Parent=Msa0937350-mRNA-1
chr6_3 CDS 8609173 8609482 8609173 ID=Msa0937350-mRNA-1:cds;Parent=Msa0937350-mRNA-1
chr6_3 three_prime_UTR 8609483 8610188 8609483 ID=Msa0937350-mRNA-1:three_prime_utr;Parent=Msa0937350-mRNA-1
Gene Sequence

>Msa0937350

ATGTCTCATCTAGGCTTTCTTGTTCTAGGAATTATTTTCTCCTTGATCTCATATGTCCATGGCTATGGTAGAAATTGGGGTTGGATTAATGCACATGCAACCTTCTATGGTGGCAGTGGTGCATGTGGATATGGAAACTTGTATAGTCAAGCAGCACTTAGTACTGCATTATTCAACAATGGTTTGAGTTGTGGTGCATGCTATGAAATTAAATGTGCTAGTGACCCAAAATGGTGTCTCCATGGCTCCATTGTTGTTACTGCCACTAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCTAATCACCATTTTGATCTCTCTCAACCTGTTTTCCAACACATTGCTCAATATAAAGCTGGTATTGTTCCTGTTGTTTATAGAAGGGTAAGGTGTAGAAGAAGAGGTGGAATAAGGTTCACAATCAATGGTCATTCTTACTTCAATTTAGTCCTTGTGACTAATGTTGGAGGTGCTGGTGATGTGCATTCTGTAGCCATCAAAGGTTCAAGGACTAGATGGCAAGCCATGTCAAGGAATTGGGGACAAAATTGGCAGAGCAACTCTTATTTGAATGGACAAAGTCTTTCATTTGTAGTCACCACGGGTAATGGTCATAGTATTGTGTCATTTAATGTTGCCCCACCCAGTTGGTCCTTTGGACAAACCTACACTGGAAGGCAGTTCCTCTACTAA
Protein sequence

>Msa0937350

MSHLGFLVLGIIFSLISYVHGYGRNWGWINAHATFYGGSGACGYGNLYSQAALSTALFNNGLSCGACYEIKCASDPKWCLHGSIVVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYKAGIVPVVYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQFLY*