AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0680930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0680930 MtrunA17_Chr4g0027001 95.082 244 11 1 1 243 1 244 2.81e-175 481
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0680930 AT3G44620.1 63.948 233 64 3 14 237 18 239 8.47e-99 288
Msa0680930 AT3G44620.2 58.203 256 64 4 14 237 18 262 4.46e-93 274
Msa0680930 AT3G44485.1 53.333 60 22 1 178 231 5 64 5.49e-11 57.4

Find 76 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCACATTGTCATATTAT+TGG 0.172149 4_4:+40664480 None:intergenic
CGTATTTGTGACTTAATTCT+TGG 0.180479 4_4:+40664810 None:intergenic
TTTGAAGCTGACCTCATTCT+TGG 0.214058 4_4:+40666777 None:intergenic
TGGGAATATTTAACATGTTC+AGG 0.219183 4_4:-40664590 Msa0680930:three_prime_UTR
TCAAAATATCACTTGATAAT+TGG 0.220024 4_4:+40664622 None:intergenic
AATCCATGGCTTCTATATAT+TGG 0.226052 4_4:-40664853 Msa0680930:three_prime_UTR
GGATCTTCTGGCTATTAAAA+AGG 0.238113 4_4:+40664948 None:intergenic
TATATAGAAGCCATGGATTT+AGG 0.251890 4_4:+40664857 None:intergenic
GGCAAAATGGTAAATTAATA+AGG 0.261064 4_4:+40667410 None:intergenic
TTGGGTTTGGAGAGAGGAAT+TGG 0.264729 4_4:+40667380 None:intergenic
ATCATTGCTGGATAGCATTT+TGG 0.270039 4_4:-40665002 Msa0680930:CDS
AAATAAATGGAAAAGAATAA+AGG 0.303449 4_4:-40664549 Msa0680930:three_prime_UTR
ACCTGAAGATGCACACAAAA+AGG 0.322490 4_4:-40666507 Msa0680930:intron
GAATGAAGAATGGGACATTT+GGG 0.326726 4_4:+40667362 None:intergenic
AATCCCAAGATTGGATCTTC+TGG 0.327565 4_4:+40664936 None:intergenic
TGCATTGTGCCCAATCAAAT+TGG 0.335404 4_4:-40664656 Msa0680930:intron
GGAATGAAGAATGGGACATT+TGG 0.337993 4_4:+40667361 None:intergenic
ATCCATGGCTTCTATATATT+GGG 0.357423 4_4:-40664852 Msa0680930:three_prime_UTR
TTCTCCAATTCAAGCTTCAA+TGG 0.365348 4_4:-40667275 Msa0680930:CDS
TCCGTTCTCTTTGTATGTCT+TGG 0.367142 4_4:-40667214 Msa0680930:CDS
ACAAAATCAGAAGGCTTGAT+TGG 0.384101 4_4:+40666720 None:intergenic
AGGAGAGGGTCCAATTTGAT+TGG 0.385589 4_4:+40664646 None:intergenic
TTCAGATAACTTCAATTTCA+AGG 0.407069 4_4:-40666743 Msa0680930:CDS
AATAAATGGAAAAGAATAAA+GGG 0.408842 4_4:-40664548 Msa0680930:three_prime_UTR
AAGAATGGGACATTTGGGTT+TGG 0.412520 4_4:+40667367 None:intergenic
GAAGCCATTGAAGCTTGAAT+TGG 0.416893 4_4:+40667271 None:intergenic
AATTGGGAAGAGTGGCAAAA+TGG 0.422646 4_4:+40667397 None:intergenic
TATTCCTCTGCAACCAATTG+AGG 0.423028 4_4:+40667466 None:intergenic
AGATGCTTGTGAATCATTGC+TGG 0.423871 4_4:-40665014 Msa0680930:CDS
TGCTGAGTCTCAGTATTCAA+TGG 0.429947 4_4:+40664749 None:intergenic
TTGTGTGCATCTTCAGGTAA+AGG 0.430130 4_4:+40666512 None:intergenic
GTGAAAACACCTTCAGCAGC+TGG 0.442462 4_4:+40667175 None:intergenic
TGGGTTTGGAGAGAGGAATT+GGG 0.442893 4_4:+40667381 None:intergenic
GTTTGATCTTATTCTTGCTA+TGG 0.444378 4_4:-40666694 Msa0680930:CDS
TGGGATTAAGCTGTAGAGAT+TGG 0.445393 4_4:-40664920 Msa0680930:three_prime_UTR
CTACAGCTTAATCCCAAGAT+TGG 0.448897 4_4:+40664927 None:intergenic
ATAGCCAGAAGATCCAATCT+TGG 0.451431 4_4:-40664940 Msa0680930:three_prime_UTR
GTTTCATTGTCCTAAATCCA+TGG 0.454744 4_4:-40664867 Msa0680930:three_prime_UTR
GGACATTTGGGTTTGGAGAG+AGG 0.457071 4_4:+40667374 None:intergenic
ATTGATTCTGCTGGTACAAT+CGG 0.457565 4_4:-40667112 Msa0680930:CDS
ATCTAGTGGAGCTCCTCAAT+TGG 0.463965 4_4:-40667479 Msa0680930:five_prime_UTR
TTGTGACTTAATTCTTGGAT+AGG 0.464447 4_4:+40664815 None:intergenic
TAGCCAGAAGATCCAATCTT+GGG 0.466253 4_4:-40664939 Msa0680930:three_prime_UTR
GAAGTCCCGGATCCTTACTA+TGG 0.472238 4_4:-40666054 Msa0680930:CDS
GGGAATATTTAACATGTTCA+GGG 0.474221 4_4:-40664589 Msa0680930:three_prime_UTR
AAGTTCAGAATTGATTCTGC+TGG 0.475953 4_4:-40667121 Msa0680930:CDS
GAGAGAGGAATTGGGAAGAG+TGG 0.481414 4_4:+40667389 None:intergenic
GGTCCACCATAGTAAGGATC+CGG 0.483919 4_4:+40666048 None:intergenic
CCTTGAGGTCCACCATAGTA+AGG 0.486542 4_4:+40666042 None:intergenic
CCTTACTATGGTGGACCTCA+AGG 0.500453 4_4:-40666042 Msa0680930:CDS
GCTGAGTCTCAGTATTCAAT+GGG 0.515383 4_4:+40664750 None:intergenic
CACTTGATAATTGGAAGGAG+AGG 0.527441 4_4:+40664631 None:intergenic
GCATGATGAAACCGAAGTCC+CGG 0.534176 4_4:-40666067 Msa0680930:CDS
GATTAAGCTGTAGAGATTGG+CGG 0.539780 4_4:-40664917 Msa0680930:three_prime_UTR
CATACAAAGAGAACGGAGAA+TGG 0.541536 4_4:+40667220 None:intergenic
TTCCCAATATATAGAAGCCA+TGG 0.544506 4_4:+40664850 None:intergenic
TGTGTGGAAGGAATGAAGAA+TGG 0.545384 4_4:+40667352 None:intergenic
GTGTGGAAGGAATGAAGAAT+GGG 0.560389 4_4:+40667353 None:intergenic
AATATCACTTGATAATTGGA+AGG 0.564784 4_4:+40664626 None:intergenic
AGCTCCTCAATTGGTTGCAG+AGG 0.565264 4_4:-40667470 Msa0680930:five_prime_UTR
TGTAGAAGCCCAGCTGCTGA+AGG 0.566668 4_4:-40667184 Msa0680930:CDS
ACTTAATTCTTGGATAGGCA+TGG 0.571692 4_4:+40664820 None:intergenic
TGAAAACACCTTCAGCAGCT+GGG 0.579306 4_4:+40667176 None:intergenic
ATAGTAAGGATCCGGGACTT+CGG 0.579621 4_4:+40666056 None:intergenic
ACTTGATAATTGGAAGGAGA+GGG 0.580230 4_4:+40664632 None:intergenic
GTCCACCATAGTAAGGATCC+GGG 0.586473 4_4:+40666049 None:intergenic
TTGAATGTAAAGTTATCTAG+TGG 0.587388 4_4:-40667493 Msa0680930:five_prime_UTR
TCAAACTCAACAAAATCAGA+AGG 0.591117 4_4:+40666711 None:intergenic
ATGAAGCTGATCCAAGAATG+AGG 0.615117 4_4:-40666788 Msa0680930:CDS
GTCCCGGATCCTTACTATGG+TGG 0.618032 4_4:-40666051 Msa0680930:CDS
ACTCAGCAGATTATATAGCA+TGG 0.620807 4_4:-40664734 Msa0680930:three_prime_UTR
GCCAAGACATACAAAGAGAA+CGG 0.626597 4_4:+40667213 None:intergenic
ATGAAGACACTATACACTGA+CGG 0.640732 4_4:-40667439 Msa0680930:CDS
GCTATGGACAAGCAAAACAA+AGG 0.649274 4_4:-40666678 Msa0680930:intron
TATACCTTCTCAAAACCTTG+AGG 0.655564 4_4:+40666027 None:intergenic
TTTAGGACAATGAAACAACA+AGG 0.714835 4_4:+40664874 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTGTTTATTTTTTTAAATTT+CGG - chr4_4:40664989-40665008 Msa0680930:CDS 10.0%
!!! TATGAAAAAATTTGTTTTTT+TGG - chr4_4:40665094-40665113 Msa0680930:intron 10.0%
!!! ATGAAAAAATTTGTTTTTTT+GGG - chr4_4:40665095-40665114 Msa0680930:intron 10.0%
!!! AAAAAGTTGATTTTTTATGA+TGG - chr4_4:40664941-40664960 Msa0680930:three_prime_UTR 15.0%
!!! AAAAGTTGATTTTTTATGAT+GGG - chr4_4:40664942-40664961 Msa0680930:three_prime_UTR 15.0%
!!! AAAGTTGATATTTTTTTTGA+AGG - chr4_4:40665152-40665171 Msa0680930:intron 15.0%
!!! AAGTTGATATTTTTTTTGAA+GGG - chr4_4:40665153-40665172 Msa0680930:intron 15.0%
!!! CTCTTTTTATTAAATTGTAA+TGG - chr4_4:40665364-40665383 Msa0680930:intron 15.0%
!! AAAACAAAAAAAAAACAACA+AGG + chr4_4:40665391-40665410 None:intergenic 15.0%
!!! TTGTTTTTTTTTTGTTTTAG+AGG - chr4_4:40665393-40665412 Msa0680930:intron 15.0%
!!! ATAAAATTTTCATTTTTCCT+TGG + chr4_4:40665678-40665697 None:intergenic 15.0%
!! AAATAAATGGAAAAGAATAA+AGG - chr4_4:40667417-40667436 Msa0680930:CDS 15.0%
!! AATAAATGGAAAAGAATAAA+GGG - chr4_4:40667418-40667437 Msa0680930:CDS 15.0%
!! ATTTGATATAGAGATGTTTA+AGG + chr4_4:40664900-40664919 None:intergenic 20.0%
!!! AGTTTTTTTTTTTCTCTTTC+TGG - chr4_4:40665712-40665731 Msa0680930:intron 20.0%
!! TATTCTTTATGATAGGTTAT+TGG - chr4_4:40665960-40665979 Msa0680930:intron 20.0%
!!! ATGATAATATTTTCTGTCAT+TGG - chr4_4:40666369-40666388 Msa0680930:intron 20.0%
!! ATTGCATATATTCTAATATG+AGG - chr4_4:40666392-40666411 Msa0680930:intron 20.0%
!!! CTTCTAAAGACATTTTAAAT+TGG - chr4_4:40666644-40666663 Msa0680930:intron 20.0%
!!! AGAATCAAAAAACTACATTT+TGG - chr4_4:40666717-40666736 Msa0680930:CDS 20.0%
!!! TGTTTTCAAATGATAATATG+TGG + chr4_4:40666845-40666864 None:intergenic 20.0%
!!! TCAAAATATCACTTGATAAT+TGG + chr4_4:40667347-40667366 None:intergenic 20.0%
!!! GTATGAGAGTTTTAAATAAA+TGG - chr4_4:40667404-40667423 Msa0680930:CDS 20.0%
!!! ACTTTTTTTATTGTAACTAG+AGG - chr4_4:40667441-40667460 Msa0680930:CDS 20.0%
!! AATTCACATTGTCATATTAT+TGG + chr4_4:40667489-40667508 None:intergenic 20.0%
! TTGAATGTAAAGTTATCTAG+TGG - chr4_4:40664473-40664492 Msa0680930:three_prime_UTR 25.0%
! GGCAAAATGGTAAATTAATA+AGG + chr4_4:40664559-40664578 None:intergenic 25.0%
!!! AGATTTTGCTGTTAATTTTC+TGG + chr4_4:40664642-40664661 None:intergenic 25.0%
!! AATTTCGGAATTGATTCTAT+TGG - chr4_4:40665004-40665023 Msa0680930:CDS 25.0%
! TACAATCAATTATCATGAAG+TGG - chr4_4:40665027-40665046 Msa0680930:CDS 25.0%
! ACAATCAATTATCATGAAGT+GGG - chr4_4:40665028-40665047 Msa0680930:CDS 25.0%
!!! TTTTTGGGTTGTTTTTATGA+TGG - chr4_4:40665110-40665129 Msa0680930:intron 25.0%
!!! TTTTGGGTTGTTTTTATGAT+GGG - chr4_4:40665111-40665130 Msa0680930:intron 25.0%
! TTCAGATAACTTCAATTTCA+AGG - chr4_4:40665223-40665242 Msa0680930:intron 25.0%
! GAGATGTTATAATCTGAATT+TGG - chr4_4:40665319-40665338 Msa0680930:intron 25.0%
! AATCTGAATTTGGTTGTTTA+TGG - chr4_4:40665329-40665348 Msa0680930:intron 25.0%
!!! TTTTGTTTTAGAGGACATAT+TGG - chr4_4:40665402-40665421 Msa0680930:intron 25.0%
!! TTGTTCTAAATCGTATATTG+TGG - chr4_4:40665602-40665621 Msa0680930:intron 25.0%
!!! TTTTTTTTTCTCTTTCTGGT+AGG - chr4_4:40665716-40665735 Msa0680930:intron 25.0%
! TTGTTAGACAACCTAAATTA+AGG - chr4_4:40665753-40665772 Msa0680930:intron 25.0%
!! GAAGGTATATTCTTTATGAT+AGG - chr4_4:40665953-40665972 Msa0680930:intron 25.0%
! AGAAGTTGAATATCATTTAC+CGG - chr4_4:40666009-40666028 Msa0680930:intron 25.0%
!! ATGATTAGTTGATTTCAGTT+AGG + chr4_4:40666335-40666354 None:intergenic 25.0%
! TGAAATCAACTAATCATAGT+TGG - chr4_4:40666338-40666357 Msa0680930:intron 25.0%
! ATTCTAATATGAGGAATACT+AGG - chr4_4:40666401-40666420 Msa0680930:intron 25.0%
! ATATTGAGTGAAATTCATGT+AGG - chr4_4:40666448-40666467 Msa0680930:intron 25.0%
!!! CTAACACTCACTTTTTTATT+GGG + chr4_4:40666528-40666547 None:intergenic 25.0%
!!! TCTAACACTCACTTTTTTAT+TGG + chr4_4:40666529-40666548 None:intergenic 25.0%
!!! AATTTTGCTTTTGCATTTCT+TGG - chr4_4:40666668-40666687 Msa0680930:intron 25.0%
!!! ATTTTGCTTTTGCATTTCTT+GGG - chr4_4:40666669-40666688 Msa0680930:intron 25.0%
!! TGATTTGTCATATTGTACAT+CGG - chr4_4:40666792-40666811 Msa0680930:CDS 25.0%
! ACATTAGAAGAATGATTACA+AGG - chr4_4:40667284-40667303 Msa0680930:CDS 25.0%
!! AATATCACTTGATAATTGGA+AGG + chr4_4:40667343-40667362 None:intergenic 25.0%
!!! TTATCAAGTGATATTTTGAC+TGG - chr4_4:40667348-40667367 Msa0680930:CDS 25.0%
!!! TGATATTTTGACTGGTAAAT+TGG - chr4_4:40667356-40667375 Msa0680930:CDS 25.0%
!!! GATATTTTGACTGGTAAATT+GGG - chr4_4:40667357-40667376 Msa0680930:CDS 25.0%
!! TGTTAATTTTCTGGTATGTG+TGG + chr4_4:40664633-40664652 None:intergenic 30.0%
! AGAAAAGAGAGAGTTTTTGA+AGG + chr4_4:40664675-40664694 None:intergenic 30.0%
TCAAACTCAACAAAATCAGA+AGG + chr4_4:40665258-40665277 None:intergenic 30.0%
GTTTGATCTTATTCTTGCTA+TGG - chr4_4:40665272-40665291 Msa0680930:intron 30.0%
! TATTGGAAGCTTTTAGTAGA+TGG - chr4_4:40665419-40665438 Msa0680930:intron 30.0%
CGTATATTGTGGAACAATTA+TGG - chr4_4:40665613-40665632 Msa0680930:intron 30.0%
TTTGACAACATTGAATTCCA+AGG - chr4_4:40665658-40665677 Msa0680930:intron 30.0%
! GTCTAACAAAAACTTGCTTT+AGG + chr4_4:40665742-40665761 None:intergenic 30.0%
!! AATATGTTTTTCAACCCTGA+TGG - chr4_4:40665828-40665847 Msa0680930:intron 30.0%
TGGATCTGACTACTTTATAT+GGG + chr4_4:40666494-40666513 None:intergenic 30.0%
TTTATTGGGTGATATTCATG+TGG + chr4_4:40666514-40666533 None:intergenic 30.0%
GATTTGTCATATTGTACATC+GGG - chr4_4:40666793-40666812 Msa0680930:CDS 30.0%
!! CTGGCTATTAAAAAGGTATT+AGG + chr4_4:40667014-40667033 None:intergenic 30.0%
! TTTAGGACAATGAAACAACA+AGG + chr4_4:40667095-40667114 None:intergenic 30.0%
TATATAGAAGCCATGGATTT+AGG + chr4_4:40667112-40667131 None:intergenic 30.0%
AATCCATGGCTTCTATATAT+TGG - chr4_4:40667113-40667132 Msa0680930:CDS 30.0%
ATCCATGGCTTCTATATATT+GGG - chr4_4:40667114-40667133 Msa0680930:CDS 30.0%
TTGTGACTTAATTCTTGGAT+AGG + chr4_4:40667154-40667173 None:intergenic 30.0%
CGTATTTGTGACTTAATTCT+TGG + chr4_4:40667159-40667178 None:intergenic 30.0%
TGGGAATATTTAACATGTTC+AGG - chr4_4:40667376-40667395 Msa0680930:CDS 30.0%
GGGAATATTTAACATGTTCA+GGG - chr4_4:40667377-40667396 Msa0680930:CDS 30.0%
ATGAAGACACTATACACTGA+CGG - chr4_4:40664527-40664546 Msa0680930:three_prime_UTR 35.0%
GAATGAAGAATGGGACATTT+GGG + chr4_4:40664607-40664626 None:intergenic 35.0%
!! AATTTTCTGGTATGTGTGGA+AGG + chr4_4:40664629-40664648 None:intergenic 35.0%
!! GAGAGAGTTTTTGAAGGAAA+TGG + chr4_4:40664669-40664688 None:intergenic 35.0%
TTCTCCAATTCAAGCTTCAA+TGG - chr4_4:40664691-40664710 Msa0680930:three_prime_UTR 35.0%
!! ACAGACTTGGTGAAAAAAAG+AGG - chr4_4:40664812-40664831 Msa0680930:three_prime_UTR 35.0%
! AAGTTCAGAATTGATTCTGC+TGG - chr4_4:40664845-40664864 Msa0680930:three_prime_UTR 35.0%
! ATTGATTCTGCTGGTACAAT+CGG - chr4_4:40664854-40664873 Msa0680930:three_prime_UTR 35.0%
TACAATCGGTTATCATGAAG+TGG - chr4_4:40664868-40664887 Msa0680930:three_prime_UTR 35.0%
ACAATCGGTTATCATGAAGT+GGG - chr4_4:40664869-40664888 Msa0680930:three_prime_UTR 35.0%
ACAAAATCAGAAGGCTTGAT+TGG + chr4_4:40665249-40665268 None:intergenic 35.0%
ATATAAGGCGGCCTTAATTT+AGG + chr4_4:40665767-40665786 None:intergenic 35.0%
TCACGGTCAACACAAATATA+AGG + chr4_4:40665782-40665801 None:intergenic 35.0%
AGCAACAAAAGTTCTACTCA+CGG + chr4_4:40665799-40665818 None:intergenic 35.0%
TATACCTTCTCAAAACCTTG+AGG + chr4_4:40665942-40665961 None:intergenic 35.0%
ATTCAAGACTATCTTTGCAC+CGG + chr4_4:40666031-40666050 None:intergenic 35.0%
CTAGTGAAATAGTTGAGTGT+TGG - chr4_4:40666264-40666283 Msa0680930:intron 35.0%
!!! TGGGATCCATTTTAAAGTGT+GGG + chr4_4:40666475-40666494 None:intergenic 35.0%
!!! ATGGGATCCATTTTAAAGTG+TGG + chr4_4:40666476-40666495 None:intergenic 35.0%
GTGGATCTGACTACTTTATA+TGG + chr4_4:40666495-40666514 None:intergenic 35.0%
! ATCATTGCTGGATAGCATTT+TGG - chr4_4:40666964-40666983 Msa0680930:intron 35.0%
! GGATCTTCTGGCTATTAAAA+AGG + chr4_4:40667021-40667040 None:intergenic 35.0%
GTTTCATTGTCCTAAATCCA+TGG - chr4_4:40667099-40667118 Msa0680930:intron 35.0%
TTCCCAATATATAGAAGCCA+TGG + chr4_4:40667119-40667138 None:intergenic 35.0%
ACTTAATTCTTGGATAGGCA+TGG + chr4_4:40667149-40667168 None:intergenic 35.0%
ACTCAGCAGATTATATAGCA+TGG - chr4_4:40667232-40667251 Msa0680930:CDS 35.0%
! ACTTGATAATTGGAAGGAGA+GGG + chr4_4:40667337-40667356 None:intergenic 35.0%
TATTCCTCTGCAACCAATTG+AGG + chr4_4:40664503-40664522 None:intergenic 40.0%
AATTGGGAAGAGTGGCAAAA+TGG + chr4_4:40664572-40664591 None:intergenic 40.0%
! AAGAATGGGACATTTGGGTT+TGG + chr4_4:40664602-40664621 None:intergenic 40.0%
GGAATGAAGAATGGGACATT+TGG + chr4_4:40664608-40664627 None:intergenic 40.0%
GTGTGGAAGGAATGAAGAAT+GGG + chr4_4:40664616-40664635 None:intergenic 40.0%
TGTGTGGAAGGAATGAAGAA+TGG + chr4_4:40664617-40664636 None:intergenic 40.0%
GAAGCCATTGAAGCTTGAAT+TGG + chr4_4:40664698-40664717 None:intergenic 40.0%
CATACAAAGAGAACGGAGAA+TGG + chr4_4:40664749-40664768 None:intergenic 40.0%
TCCGTTCTCTTTGTATGTCT+TGG - chr4_4:40664752-40664771 Msa0680930:three_prime_UTR 40.0%
GCCAAGACATACAAAGAGAA+CGG + chr4_4:40664756-40664775 None:intergenic 40.0%
!!! TGAAGGTGTTTTCACAGACT+TGG - chr4_4:40664799-40664818 Msa0680930:three_prime_UTR 40.0%
ATGAAGCTGATCCAAGAATG+AGG - chr4_4:40665178-40665197 Msa0680930:intron 40.0%
! TTTGAAGCTGACCTCATTCT+TGG + chr4_4:40665192-40665211 None:intergenic 40.0%
GCTATGGACAAGCAAAACAA+AGG - chr4_4:40665288-40665307 Msa0680930:intron 40.0%
TGGACAAGCAAAACAAAGGT+AGG - chr4_4:40665292-40665311 Msa0680930:intron 40.0%
GGACAAGCAAAACAAAGGTA+GGG - chr4_4:40665293-40665312 Msa0680930:intron 40.0%
GACAAGCAAAACAAAGGTAG+GGG - chr4_4:40665294-40665313 Msa0680930:intron 40.0%
TTGTGTGCATCTTCAGGTAA+AGG + chr4_4:40665457-40665476 None:intergenic 40.0%
ACCTGAAGATGCACACAAAA+AGG - chr4_4:40665459-40665478 Msa0680930:intron 40.0%
! ACCTTTTTGTGTGCATCTTC+AGG + chr4_4:40665463-40665482 None:intergenic 40.0%
AAATCGAACCCCTTTATCCA+AGG - chr4_4:40665499-40665518 Msa0680930:intron 40.0%
ACAACACTGCCTTGGATAAA+GGG + chr4_4:40665511-40665530 None:intergenic 40.0%
TTGTCAATTGCGGACAATAG+CGG - chr4_4:40665527-40665546 Msa0680930:intron 40.0%
GCTACAACATTCTAGCGTAT+CGG + chr4_4:40665565-40665584 None:intergenic 40.0%
CGGTCAACACAAATATAAGG+CGG + chr4_4:40665779-40665798 None:intergenic 40.0%
!! ATAGGTTATTGGTTCACCCT+TGG - chr4_4:40665971-40665990 Msa0680930:intron 40.0%
ACCCTTGGTTCATCTTTGTA+GGG - chr4_4:40665986-40666005 Msa0680930:intron 40.0%
TCCCTACAAAGATGAACCAA+GGG + chr4_4:40665990-40666009 None:intergenic 40.0%
TAGCACGATACTGACATACA+CGG - chr4_4:40666144-40666163 Msa0680930:intron 40.0%
! GTAGGTCCCACACTTTAAAA+TGG - chr4_4:40666466-40666485 Msa0680930:intron 40.0%
AGATGCTTGTGAATCATTGC+TGG - chr4_4:40666952-40666971 Msa0680930:intron 40.0%
ATAGCCAGAAGATCCAATCT+TGG - chr4_4:40667026-40667045 Msa0680930:intron 40.0%
TAGCCAGAAGATCCAATCTT+GGG - chr4_4:40667027-40667046 Msa0680930:intron 40.0%
AATCCCAAGATTGGATCTTC+TGG + chr4_4:40667033-40667052 None:intergenic 40.0%
CTACAGCTTAATCCCAAGAT+TGG + chr4_4:40667042-40667061 None:intergenic 40.0%
TGGGATTAAGCTGTAGAGAT+TGG - chr4_4:40667046-40667065 Msa0680930:intron 40.0%
GATTAAGCTGTAGAGATTGG+CGG - chr4_4:40667049-40667068 Msa0680930:intron 40.0%
GCTGAGTCTCAGTATTCAAT+GGG + chr4_4:40667219-40667238 None:intergenic 40.0%
TGCTGAGTCTCAGTATTCAA+TGG + chr4_4:40667220-40667239 None:intergenic 40.0%
TGCATTGTGCCCAATCAAAT+TGG - chr4_4:40667310-40667329 Msa0680930:CDS 40.0%
! CACTTGATAATTGGAAGGAG+AGG + chr4_4:40667338-40667357 None:intergenic 40.0%
ATCTAGTGGAGCTCCTCAAT+TGG - chr4_4:40664487-40664506 Msa0680930:three_prime_UTR 45.0%
TGGGTTTGGAGAGAGGAATT+GGG + chr4_4:40664588-40664607 None:intergenic 45.0%
TTGGGTTTGGAGAGAGGAAT+TGG + chr4_4:40664589-40664608 None:intergenic 45.0%
TGAAAACACCTTCAGCAGCT+GGG + chr4_4:40664793-40664812 None:intergenic 45.0%
AGGTCAGCTTCAAAAAGACG+TGG - chr4_4:40665198-40665217 Msa0680930:intron 45.0%
GGTCAGCTTCAAAAAGACGT+GGG - chr4_4:40665199-40665218 Msa0680930:intron 45.0%
CAACACTGCCTTGGATAAAG+GGG + chr4_4:40665510-40665529 None:intergenic 45.0%
GACAACACTGCCTTGGATAA+AGG + chr4_4:40665512-40665531 None:intergenic 45.0%
CAAGGCAGTGTTGTCAATTG+CGG - chr4_4:40665517-40665536 Msa0680930:intron 45.0%
ATAGTAAGGATCCGGGACTT+CGG + chr4_4:40665913-40665932 None:intergenic 45.0%
!!! TGGACCTCAAGGTTTTGAGA+AGG - chr4_4:40665935-40665954 Msa0680930:intron 45.0%
CACCCTTGGTTCATCTTTGT+AGG - chr4_4:40665985-40666004 Msa0680930:intron 45.0%
CTCCCTACAAAGATGAACCA+AGG + chr4_4:40665991-40666010 None:intergenic 45.0%
! ACGCCTTTCATGAGAAGTGT+CGG + chr4_4:40666103-40666122 None:intergenic 45.0%
! ATGTGTCACTGTCGTGTCTA+GGG - chr4_4:40666213-40666232 Msa0680930:intron 45.0%
CAAGCAATGAAAGACCGACA+CGG + chr4_4:40666239-40666258 None:intergenic 45.0%
GTTCTTTGCACTCGCAATTC+TGG - chr4_4:40666567-40666586 Msa0680930:intron 45.0%
GCAATTCTGGTGCACATACT+TGG - chr4_4:40666580-40666599 Msa0680930:intron 45.0%
TGGTGCACATACTTGGTACT+TGG - chr4_4:40666587-40666606 Msa0680930:intron 45.0%
CAAGCATATCTAACACCTGC+AGG + chr4_4:40666931-40666950 None:intergenic 45.0%
! GTAGAGATTGGCGGTTTTCA+TGG - chr4_4:40667058-40667077 Msa0680930:intron 45.0%
GGAGAGGGTCCAATTTGATT+GGG + chr4_4:40667322-40667341 None:intergenic 45.0%
AGGAGAGGGTCCAATTTGAT+TGG + chr4_4:40667323-40667342 None:intergenic 45.0%
AGCTCCTCAATTGGTTGCAG+AGG - chr4_4:40664496-40664515 Msa0680930:three_prime_UTR 50.0%
GAGAGAGGAATTGGGAAGAG+TGG + chr4_4:40664580-40664599 None:intergenic 50.0%
! GGACATTTGGGTTTGGAGAG+AGG + chr4_4:40664595-40664614 None:intergenic 50.0%
GTGAAAACACCTTCAGCAGC+TGG + chr4_4:40664794-40664813 None:intergenic 50.0%
CGCAATTGACAACACTGCCT+TGG + chr4_4:40665519-40665538 None:intergenic 50.0%
TTCAACCCTGATGGAGAGTC+TGG - chr4_4:40665837-40665856 Msa0680930:intron 50.0%
TCAACCCTGATGGAGAGTCT+GGG - chr4_4:40665838-40665857 Msa0680930:intron 50.0%
GCATGATGAAACCGAAGTCC+CGG - chr4_4:40665899-40665918 Msa0680930:intron 50.0%
GAAGTCCCGGATCCTTACTA+TGG - chr4_4:40665912-40665931 Msa0680930:intron 50.0%
GTCCACCATAGTAAGGATCC+GGG + chr4_4:40665920-40665939 None:intergenic 50.0%
GGTCCACCATAGTAAGGATC+CGG + chr4_4:40665921-40665940 None:intergenic 50.0%
CCTTGAGGTCCACCATAGTA+AGG + chr4_4:40665927-40665946 None:intergenic 50.0%
!! CCTTACTATGGTGGACCTCA+AGG - chr4_4:40665924-40665943 Msa0680930:intron 50.0%
! GCACCGACACTTCTCATGAA+AGG - chr4_4:40666097-40666116 Msa0680930:CDS 50.0%
CAGTGACACATCAACGACAC+TGG + chr4_4:40666204-40666223 None:intergenic 50.0%
! GATGTGTCACTGTCGTGTCT+AGG - chr4_4:40666212-40666231 Msa0680930:intron 50.0%
GATCATCATGTTGCACCTGC+AGG - chr4_4:40666913-40666932 Msa0680930:intron 50.0%
TGTAGAAGCCCAGCTGCTGA+AGG - chr4_4:40664782-40664801 Msa0680930:three_prime_UTR 55.0%
CCATCCCAGACTCTCCATCA+GGG + chr4_4:40665845-40665864 None:intergenic 55.0%
ACCATCCCAGACTCTCCATC+AGG + chr4_4:40665846-40665865 None:intergenic 55.0%
GTCCCGGATCCTTACTATGG+TGG - chr4_4:40665915-40665934 Msa0680930:intron 55.0%
GTATCGTGCTAGTGTCGTGC+TGG + chr4_4:40666135-40666154 None:intergenic 55.0%
CCCTGATGGAGAGTCTGGGA+TGG - chr4_4:40665842-40665861 Msa0680930:intron 60.0%
! TGGAGAGTCTGGGATGGTGC+AGG - chr4_4:40665848-40665867 Msa0680930:intron 60.0%
GCTAGTGTCGTGCTGGAGGT+TGG + chr4_4:40666128-40666147 None:intergenic 60.0%
TCGTGCTAGTGTCGTGCTGG+AGG + chr4_4:40666132-40666151 None:intergenic 60.0%
! TGTCGTGTCTAGGGCCGTGT+CGG - chr4_4:40666222-40666241 Msa0680930:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 40664465 40667523 40664465 ID=Msa0680930;Name=Msa0680930
chr4_4 mRNA 40664465 40667523 40664465 ID=Msa0680930-mRNA-1;Parent=Msa0680930;Name=Msa0680930-mRNA-1;_AED=0.06;_eAED=0.06;_QI=62|1|1|1|0.8|0.66|6|484|243
chr4_4 exon 40664465 40664665 40664465 ID=Msa0680930-mRNA-1:exon:9618;Parent=Msa0680930-mRNA-1
chr4_4 exon 40664690 40665053 40664690 ID=Msa0680930-mRNA-1:exon:9617;Parent=Msa0680930-mRNA-1
chr4_4 exon 40666032 40666118 40666032 ID=Msa0680930-mRNA-1:exon:9616;Parent=Msa0680930-mRNA-1
chr4_4 exon 40666508 40666575 40666508 ID=Msa0680930-mRNA-1:exon:9615;Parent=Msa0680930-mRNA-1
chr4_4 exon 40666679 40666814 40666679 ID=Msa0680930-mRNA-1:exon:9614;Parent=Msa0680930-mRNA-1
chr4_4 exon 40667102 40667523 40667102 ID=Msa0680930-mRNA-1:exon:9613;Parent=Msa0680930-mRNA-1
chr4_4 five_prime_UTR 40667462 40667523 40667462 ID=Msa0680930-mRNA-1:five_prime_utr;Parent=Msa0680930-mRNA-1
chr4_4 CDS 40667102 40667461 40667102 ID=Msa0680930-mRNA-1:cds;Parent=Msa0680930-mRNA-1
chr4_4 CDS 40666679 40666814 40666679 ID=Msa0680930-mRNA-1:cds;Parent=Msa0680930-mRNA-1
chr4_4 CDS 40666508 40666575 40666508 ID=Msa0680930-mRNA-1:cds;Parent=Msa0680930-mRNA-1
chr4_4 CDS 40666032 40666118 40666032 ID=Msa0680930-mRNA-1:cds;Parent=Msa0680930-mRNA-1
chr4_4 CDS 40664973 40665053 40664973 ID=Msa0680930-mRNA-1:cds;Parent=Msa0680930-mRNA-1
chr4_4 three_prime_UTR 40664690 40664972 40664690 ID=Msa0680930-mRNA-1:three_prime_utr;Parent=Msa0680930-mRNA-1
chr4_4 three_prime_UTR 40664465 40664665 40664465 ID=Msa0680930-mRNA-1:three_prime_utr;Parent=Msa0680930-mRNA-1
Gene Sequence

>Msa0680930

ATGAAGACACTATACACTGACGGAACAAACCTTATTAATTTACCATTTTGCCACTCTTCCCAATTCCTCTCTCCAAACCCAAATGTCCCATTCTTCATTCCTTCCACACATACCAGAAAATTAACAGCAAAATCTTCTTCCATTTCCTTCAAAAACTCTCTCTTTTCTCCAATTCAAGCTTCAATGGCTTCATCAACAGTCACAGAAGACACAAACAAACCATTCTCCGTTCTCTTTGTATGTCTTGGCAACATCTGTAGAAGCCCAGCTGCTGAAGGTGTTTTCACAGACTTGGTGAAAAAAAGAGGTTTTGATTCAAAGTTCAGAATTGATTCTGCTGGTACAATCGGTTATCATGAAGGTAATGAAGCTGATCCAAGAATGAGGTCAGCTTCAAAAAGACGTGGGATTCAGATAACTTCAATTTCAAGGCCAATCAAGCCTTCTGATTTTGTTGAGTTTGATCTTATTCTTGCTATGGACAAGCAAAACAAAGAGGACATATTGGAAGCTTTTAGTAGATGGAAGTTTAGAGATCCTTTACCTGAAGATGCACACAAAAAGGTTAAGTTGATGTGCTCATATTGTAAGAAGCATGATGAAACCGAAGTCCCGGATCCTTACTATGGTGGACCTCAAGGTTTTGAGAAGGTGTTAGATATGCTTGAAGATGCTTGTGAATCATTGCTGGATAGCATTTTGGCAGAAAATAAACATATACAAGAATCCTAA

Protein sequence

>Msa0680930

MKTLYTDGTNLINLPFCHSSQFLSPNPNVPFFIPSTHTRKLTAKSSSISFKNSLFSPIQASMASSTVTEDTNKPFSVLFVCLGNICRSPAAEGVFTDLVKKRGFDSKFRIDSAGTIGYHEGNEADPRMRSASKRRGIQITSISRPIKPSDFVEFDLILAMDKQNKEDILEAFSRWKFRDPLPEDAHKKVKLMCSYCKKHDETEVPDPYYGGPQGFEKVLDMLEDACESLLDSILAENKHIQES*