AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0533140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0533140 MtrunA17_Chr4g0006731 97.786 271 6 0 1 271 1 271 0.0 552
Msa0533140 MtrunA17_Chr7g0242451 72.656 256 67 3 1 256 1 253 6.46e-137 386
Msa0533140 MtrunA17_Chr3g0113401 66.406 256 86 0 1 256 1 256 5.29e-128 364
Msa0533140 MtrunA17_Chr7g0242401 67.729 251 79 2 5 255 32 280 4.05e-127 362
Msa0533140 MtrunA17_Chr7g0242461 64.062 256 90 1 1 256 1 254 7.97e-127 361
Msa0533140 MtrunA17_Chr7g0242431 68.000 250 78 2 6 255 32 279 2.05e-125 358
Msa0533140 MtrunA17_Chr7g0242411 65.737 251 79 4 5 255 1 244 2.69e-117 336
Msa0533140 MtrunA17_Chr7g0242391 57.422 256 104 3 5 256 1 255 7.76e-103 300
Msa0533140 MtrunA17_Chr7g0242441 47.755 245 64 4 5 249 2 182 4.01e-67 207
Msa0533140 MtrunA17_Chr2g0283411 37.712 236 135 4 6 233 4 235 1.12e-51 169
Msa0533140 MtrunA17_Chr2g0283421 39.048 210 122 3 6 209 5 214 1.85e-49 164
Msa0533140 MtrunA17_Chr4g0006701 94.828 58 3 0 221 278 1 58 2.49e-34 120
Msa0533140 MtrunA17_Chr4g0059001 34.272 213 130 4 26 232 49 257 4.62e-33 122
Msa0533140 MtrunA17_Chr2g0283391 29.609 179 99 5 41 209 1 162 3.09e-17 78.6
Msa0533140 MtrunA17_Chr4g0006711 94.595 37 2 0 102 138 1 37 2.78e-16 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0533140 AT3G11210.1 63.281 256 94 0 1 256 1 256 2.01e-123 353
Msa0533140 AT2G38180.1 60.938 256 89 4 1 254 1 247 3.15e-109 319
Msa0533140 AT5G62930.1 37.768 233 136 2 5 232 1 229 6.53e-55 178
Msa0533140 AT5G62930.2 37.768 233 136 2 5 232 27 255 1.97e-54 177
Msa0533140 AT5G45920.1 40.952 210 119 3 5 209 2 211 1.24e-53 174
Msa0533140 AT5G45920.4 40.952 210 119 3 5 209 2 211 1.24e-53 174
Msa0533140 AT5G45920.2 40.323 186 106 3 5 185 2 187 1.78e-45 152
Msa0533140 AT5G45920.3 40.323 186 106 3 5 185 2 187 1.78e-45 152
Msa0533140 AT5G62930.3 33.136 169 104 2 69 232 7 171 1.65e-29 110

Find 74 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGTATTTGAAATGATTT+TGG 0.099467 4_1:-7853034 Msa0533140:three_prime_UTR
TTTCCCATTCAAAATGTTTC+TGG 0.167567 4_1:+7853138 None:intergenic
AACACAATTTGAGGCCTTAT+TGG 0.242625 4_1:+7856260 None:intergenic
TTTAGTATTGGAAGGGAAAA+TGG 0.244883 4_1:-7856288 Msa0533140:exon
GAATTCAAGGCGTGCTGTTC+AGG 0.251854 4_1:-7855438 Msa0533140:CDS
GACTTAAAGCAGTAATATAT+TGG 0.251971 4_1:-7853731 Msa0533140:intron
CACAAATTCACGAAACATTC+AGG 0.270335 4_1:-7854470 Msa0533140:intron
GAATCTTCTGCAAACTCATT+TGG 0.330143 4_1:+7853221 None:intergenic
TGACAGCTGATTCTTCAAAT+TGG 0.333543 4_1:+7853078 None:intergenic
GAAGATTATTATCCATCTTA+AGG 0.337002 4_1:-7854623 Msa0533140:intron
ACTATATTCAGAAGCATGTT+TGG 0.339649 4_1:-7853677 Msa0533140:CDS
GATTCATTTGTCCTCTTTAG+TGG 0.350705 4_1:+7853706 None:intergenic
AGGCCTCAAATTGTGTTGTT+TGG 0.353098 4_1:-7856254 Msa0533140:CDS
TAGTTATAGTGATGAAGGTT+GGG 0.383224 4_1:-7856213 Msa0533140:CDS
AAGGCGTGCTGTTCAGGTTC+TGG 0.385053 4_1:-7855432 Msa0533140:CDS
GTGATGACCATTCGATGGTT+TGG 0.395292 4_1:+7853100 None:intergenic
TGCATGCACTTGTTATAGTC+AGG 0.397643 4_1:+7856373 None:intergenic
GGAAAATGGTAGGACCAATA+AGG 0.411315 4_1:-7856274 Msa0533140:exon
TCTATAGCAACTGGATCATA+TGG 0.419003 4_1:+7853197 None:intergenic
CAACTTAGTTATAGTGATGA+AGG 0.419570 4_1:-7856218 Msa0533140:CDS
ACTTAAAGCAGTAATATATT+GGG 0.420900 4_1:-7853730 Msa0533140:intron
CATCCACATCCATCTGGCCT+TGG 0.424382 4_1:-7854685 Msa0533140:CDS
CTATAAATTAAGAACATTTG+TGG 0.426437 4_1:-7856318 Msa0533140:five_prime_UTR
CACTTCAGCAAAGGGATGAT+TGG 0.428841 4_1:-7853609 Msa0533140:CDS
ATTGATTTCCAGTGTAGACT+TGG 0.433496 4_1:+7853245 None:intergenic
TGAATTTGTGCCTCATTGAC+TGG 0.439229 4_1:+7854483 None:intergenic
CTACTGTCAATGTCTCCAAC+TGG 0.451353 4_1:-7853166 Msa0533140:CDS
GGTTCCAGTCGGCGTCTTCG+AGG 0.470091 4_1:+7853267 None:intergenic
TTATGCGAGTCTTCTTTGAC+AGG 0.476039 4_1:+7854523 None:intergenic
ATGTTCTTAATTTATAGACT+TGG 0.481902 4_1:+7856324 None:intergenic
CTGGTCTGCACTTCAGCAAA+GGG 0.483151 4_1:-7853617 Msa0533140:CDS
GATACTGTGGTTGGAATTCA+AGG 0.484531 4_1:-7855451 Msa0533140:CDS
TGCTTCTGAATATAGTCTAC+AGG 0.490525 4_1:+7853684 None:intergenic
AGGTCCTCGAAGACGCCGAC+TGG 0.497251 4_1:-7853271 Msa0533140:CDS
TTGGTTATTGTGTACTTTGG+TGG 0.498216 4_1:-7854721 Msa0533140:CDS
TTAGTTATAGTGATGAAGGT+TGG 0.498885 4_1:-7856214 Msa0533140:CDS
ATGTCAAGGCCATTGACCTC+TGG 0.499532 4_1:-7853636 Msa0533140:CDS
TCTATTCATCCACATCCATC+TGG 0.500776 4_1:-7854691 Msa0533140:CDS
TGTGGAGTATAATTTAGTAT+TGG 0.505954 4_1:-7856300 Msa0533140:five_prime_UTR
TTGATTTCCAGTGTAGACTT+GGG 0.516004 4_1:+7853246 None:intergenic
GAGTATAATTTAGTATTGGA+AGG 0.517079 4_1:-7856296 Msa0533140:five_prime_UTR
TGTGGAATTCAACCTTAAGA+TGG 0.529846 4_1:+7854611 None:intergenic
GAACCAAACAACACAATTTG+AGG 0.531325 4_1:+7856251 None:intergenic
AGTTATAGTGATGAAGGTTG+GGG 0.537356 4_1:-7856212 Msa0533140:CDS
TCTGGTCTGCACTTCAGCAA+AGG 0.543201 4_1:-7853618 Msa0533140:CDS
AATTGGTGATGACCATTCGA+TGG 0.544305 4_1:+7853095 None:intergenic
TGCTGTTGAGCAACCATCGT+TGG 0.555054 4_1:-7854740 Msa0533140:CDS
TGGAATTCATTTGTCACATG+AGG 0.558725 4_1:-7853324 Msa0533140:CDS
AAGTGCAGACCAGAGGTCAA+TGG 0.560897 4_1:+7853627 None:intergenic
TGCATTTCCAAACCATCGAA+TGG 0.568329 4_1:-7853107 Msa0533140:CDS
TACAAACTTGTATTCTCGCA+AGG 0.568561 4_1:-7856180 Msa0533140:intron
ACATGAGGACCAAGGCCAGA+TGG 0.572819 4_1:+7854676 None:intergenic
GGACCAAGGCCAGATGGATG+TGG 0.575529 4_1:+7854682 None:intergenic
AGTTGTGAAAGAGATATTGA+AGG 0.577845 4_1:-7853291 Msa0533140:CDS
TGGCCTTGACATTCATCTCA+TGG 0.580073 4_1:+7853647 None:intergenic
AGTATAATTTAGTATTGGAA+GGG 0.581719 4_1:-7856295 Msa0533140:five_prime_UTR
ATATATTGGGACCACTAAAG+AGG 0.585513 4_1:-7853717 Msa0533140:CDS
TCGTTGGTTATTGTGTACTT+TGG 0.585768 4_1:-7854724 Msa0533140:CDS
GTATTGGAAGGGAAAATGGT+AGG 0.592463 4_1:-7856284 Msa0533140:exon
ATGTTTCTGGAAGTTCCAGT+TGG 0.594171 4_1:+7853151 None:intergenic
CAGTTCTCCTCCAGTCAATG+AGG 0.595674 4_1:-7854493 Msa0533140:CDS
ACTGGAACCCAAGTCTACAC+TGG 0.596478 4_1:-7853253 Msa0533140:CDS
TCTGGATACAATATTTCCCA+AGG 0.600454 4_1:-7855414 Msa0533140:intron
ACTATAACTAAGTTGAACAA+TGG 0.604564 4_1:+7856226 None:intergenic
GGAATTCATTTGTCACATGA+GGG 0.607224 4_1:-7853323 Msa0533140:CDS
GTGTAGACTTGGGTTCCAGT+CGG 0.629499 4_1:+7853256 None:intergenic
ACTATAACAAGTGCATGCAA+AGG 0.632866 4_1:-7856369 Msa0533140:five_prime_UTR
TATTCTTCAAGGGGTACATG+AGG 0.652455 4_1:+7854661 None:intergenic
TTTGCTGAAGTGCAGACCAG+AGG 0.667155 4_1:+7853620 None:intergenic
TACTTACGTGAAGCAAACAT+CGG 0.669235 4_1:+7853585 None:intergenic
AAGTACACAATAACCAACGA+TGG 0.696454 4_1:+7854727 None:intergenic
ATTTGTGCCTCATTGACTGG+AGG 0.707676 4_1:+7854486 None:intergenic
GTGCCATGAGATGAATGTCA+AGG 0.713777 4_1:-7853650 Msa0533140:CDS
CAAGGGGTACATGAGGACCA+AGG 0.723393 4_1:+7854668 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAAATTAATTAAATTT+TGG + chr4_1:7855807-7855826 None:intergenic 0.0%
!! AAAAATATTCAATTAATAGA+AGG - chr4_1:7850895-7850914 Msa0533140:intron 10.0%
!! TAATAAAATTATAACAGAAT+AGG - chr4_1:7852402-7852421 Msa0533140:intron 10.0%
!!! ATATACTTTTTTTTAATGAA+AGG - chr4_1:7854187-7854206 Msa0533140:intron 10.0%
!!! TATACTTTTTTTTAATGAAA+GGG - chr4_1:7854188-7854207 Msa0533140:intron 10.0%
!! AAAATTATTAGAAAAACAAT+TGG - chr4_1:7856094-7856113 Msa0533140:intron 10.0%
!!! TATTTTCTTTTTAATCCAAA+AGG + chr4_1:7850859-7850878 Msa0533150:CDS 15.0%
!!! CAATTTTTTTGTCTAATTTA+TGG + chr4_1:7850978-7850997 Msa0533150:intron 15.0%
!! CATAAATTAGACAAAAAAAT+TGG - chr4_1:7850976-7850995 Msa0533140:intron 15.0%
!! AAAATTGGAAATTTAATTGA+TGG - chr4_1:7850991-7851010 Msa0533140:intron 15.0%
!!! TTTTCATCATGATTAATTTA+TGG - chr4_1:7851422-7851441 Msa0533140:intron 15.0%
!! ATTTATATCTTTATAACCAA+CGG + chr4_1:7851801-7851820 Msa0533150:intron 15.0%
!! TAAATATTATGGTAAAAGTA+GGG + chr4_1:7851894-7851913 Msa0533150:intron 15.0%
!! CAAAATGAATCTAAATATTA+TGG + chr4_1:7851905-7851924 Msa0533150:intron 15.0%
!! AATCAAATAGCATATATAAA+AGG + chr4_1:7852344-7852363 Msa0533150:CDS 15.0%
!!! TTTTCATTTATAAACAATCT+TGG + chr4_1:7852748-7852767 None:intergenic 15.0%
!! TGTAAAAAGAAAATCAAAAT+TGG + chr4_1:7852936-7852955 None:intergenic 15.0%
!! AACTCTAATGAATAAATTAT+TGG - chr4_1:7852987-7853006 Msa0533140:intron 15.0%
!!! AAAAGTATTTGAAATGATTT+TGG - chr4_1:7853706-7853725 Msa0533140:CDS 15.0%
!!! AAAGTATTTGAAATGATTTT+GGG - chr4_1:7853707-7853726 Msa0533140:CDS 15.0%
!! ATATAAATGATATGTATATG+TGG + chr4_1:7854169-7854188 None:intergenic 15.0%
!!! AAAATTTTGAAGAAAATATG+TGG - chr4_1:7855133-7855152 Msa0533140:intron 15.0%
!! AATATTAAAATGAACCTAAT+AGG + chr4_1:7855277-7855296 None:intergenic 15.0%
!!! GAAAATATATAATGGAATAT+AGG + chr4_1:7856179-7856198 None:intergenic 15.0%
!! ATGTTCTTAATTTATAGACT+TGG + chr4_1:7850419-7850438 None:intergenic 20.0%
!! CTATAAATTAAGAACATTTG+TGG - chr4_1:7850422-7850441 Msa0533140:intron 20.0%
!!! AGTATAATTTAGTATTGGAA+GGG - chr4_1:7850445-7850464 Msa0533140:intron 20.0%
!!! AAATAAAATTTGCTCTCTTT+TGG - chr4_1:7850652-7850671 Msa0533140:intron 20.0%
!! TCATGAAAAAAAAAAACTAC+AGG + chr4_1:7850711-7850730 Msa0533150:CDS 20.0%
!!! AAAAACAACTTGTTAACAAT+TGG + chr4_1:7850738-7850757 Msa0533150:CDS 20.0%
!! TATCTGAATCTTGATAAATA+TGG - chr4_1:7851025-7851044 Msa0533140:intron 20.0%
!!! ATTTCTCTATAGCATTTTTA+TGG - chr4_1:7851209-7851228 Msa0533140:intron 20.0%
!!! AAATTTTGAATCAATACCTT+GGG + chr4_1:7851345-7851364 Msa0533150:intron 20.0%
!!! AAAATTTTGAATCAATACCT+TGG + chr4_1:7851346-7851365 Msa0533150:intron 20.0%
!! CTTATTTATATGTATGTGTA+GGG - chr4_1:7851736-7851755 Msa0533140:intron 20.0%
!! CTAAATATTATGGTAAAAGT+AGG + chr4_1:7851895-7851914 Msa0533150:intron 20.0%
!!! TGATTATTTCTCATACTTAA+AGG - chr4_1:7851941-7851960 Msa0533140:intron 20.0%
!!! GGTAAAAAAATTGTACATTT+TGG - chr4_1:7852431-7852450 Msa0533140:intron 20.0%
!! ACAAAGATGTTATAAACTAT+GGG + chr4_1:7852664-7852683 None:intergenic 20.0%
!! AACAAAGATGTTATAAACTA+TGG + chr4_1:7852665-7852684 None:intergenic 20.0%
!!! AATATATCTCATGTAACTTT+TGG + chr4_1:7852782-7852801 None:intergenic 20.0%
!! AAAAGTTACATGAGATATAT+TGG - chr4_1:7852781-7852800 Msa0533140:intron 20.0%
!! ACTTAAAGCAGTAATATATT+GGG - chr4_1:7853010-7853029 Msa0533140:three_prime_UTR 20.0%
!! AAAAATGTGGTTAAAAAATG+CGG + chr4_1:7853292-7853311 None:intergenic 20.0%
!! CTTAATACTATAGAAAAATG+TGG + chr4_1:7853305-7853324 None:intergenic 20.0%
!!! CACATTTTTCTATAGTATTA+AGG - chr4_1:7853303-7853322 Msa0533140:CDS 20.0%
!!! TTGTCTTGATACATTTTATA+GGG - chr4_1:7853392-7853411 Msa0533140:intron 20.0%
!! CTAGAAATTTGAAAACTAAA+AGG + chr4_1:7853880-7853899 None:intergenic 20.0%
!! ATGGTAAAAAAGTTCTTAAA+TGG - chr4_1:7854129-7854148 Msa0533140:intron 20.0%
!! CAAATAAATATTGGTACTTA+TGG + chr4_1:7855369-7855388 None:intergenic 20.0%
!!! ATATATAATGGAATATAGGA+CGG + chr4_1:7856175-7856194 None:intergenic 20.0%
! TGTGGAGTATAATTTAGTAT+TGG - chr4_1:7850440-7850459 Msa0533140:intron 25.0%
!! GAGTATAATTTAGTATTGGA+AGG - chr4_1:7850444-7850463 Msa0533140:intron 25.0%
!! ACTATAACTAAGTTGAACAA+TGG + chr4_1:7850517-7850536 None:intergenic 25.0%
! GATTAATTTATGGTTACTTG+TGG - chr4_1:7851432-7851451 Msa0533140:intron 25.0%
! ATTGATATCTTAACCGTTAA+CGG + chr4_1:7851634-7851653 Msa0533150:intron 25.0%
! GCTTATTTATATGTATGTGT+AGG - chr4_1:7851735-7851754 Msa0533140:intron 25.0%
! GTTTGTAAAACTGTTAGATT+TGG + chr4_1:7851832-7851851 Msa0533150:intron 25.0%
!! ATTTTCTCTGTATTCTTCAA+GGG + chr4_1:7852092-7852111 Msa0533150:CDS 25.0%
!! TATTTTCTCTGTATTCTTCA+AGG + chr4_1:7852093-7852112 Msa0533150:CDS 25.0%
! GAAGATTATTATCCATCTTA+AGG - chr4_1:7852117-7852136 Msa0533140:intron 25.0%
!! ATGAAAGAGAATATGAGTTT+TGG - chr4_1:7852375-7852394 Msa0533140:intron 25.0%
! TTATAACAGAATAGGACATA+AGG - chr4_1:7852410-7852429 Msa0533140:intron 25.0%
! GACTTAAAGCAGTAATATAT+TGG - chr4_1:7853009-7853028 Msa0533140:three_prime_UTR 25.0%
!! ATCACATGTGTCTTATTAAA+AGG - chr4_1:7853362-7853381 Msa0533140:intron 25.0%
!! CTTGTCTTGATACATTTTAT+AGG - chr4_1:7853391-7853410 Msa0533140:intron 25.0%
!!! TTTTGGGAAAAAGTTATATC+AGG - chr4_1:7853723-7853742 Msa0533140:intron 25.0%
!!! TAAGAACTTTTTTACCATTG+TGG + chr4_1:7854127-7854146 None:intergenic 25.0%
! AATTGTAGCGATAAAGAATA+GGG + chr4_1:7854909-7854928 None:intergenic 25.0%
!!! AGAGTGTTTATGTTTTTTGA+GGG + chr4_1:7854950-7854969 None:intergenic 25.0%
!!! TAGAGTGTTTATGTTTTTTG+AGG + chr4_1:7854951-7854970 None:intergenic 25.0%
!!! TCGTGAAACATGTTTTTTAA+GGG + chr4_1:7855003-7855022 None:intergenic 25.0%
! ACTTGTGGACAAATAAATAT+TGG + chr4_1:7855378-7855397 None:intergenic 25.0%
! GACACAAAAAACAAATACAA+AGG - chr4_1:7855480-7855499 Msa0533140:intron 25.0%
! ACAAAAAACAAATACAAAGG+AGG - chr4_1:7855483-7855502 Msa0533140:intron 25.0%
! AATAGAATGTTGAGAAGAAA+TGG - chr4_1:7855568-7855587 Msa0533140:intron 25.0%
!!! TATACAATGAACTTGTTAAC+CGG - chr4_1:7855669-7855688 Msa0533140:intron 25.0%
! TAATATGAATTATTGTCCGT+TGG + chr4_1:7855775-7855794 None:intergenic 25.0%
! GGACAATAATTCATATTATC+TGG - chr4_1:7855777-7855796 Msa0533140:intron 25.0%
! CAATAATTCATATTATCTGG+CGG - chr4_1:7855780-7855799 Msa0533140:intron 25.0%
! TTAAACTAAATTACATTCCG+AGG - chr4_1:7855822-7855841 Msa0533140:intron 25.0%
! TAAAGTGACTATAATTTCCA+AGG + chr4_1:7855856-7855875 None:intergenic 25.0%
!! TATATAATGGAATATAGGAC+GGG + chr4_1:7856174-7856193 None:intergenic 25.0%
! TTGAAAGAAAAGCTAGAATA+GGG + chr4_1:7856273-7856292 None:intergenic 25.0%
! TTTGAAAGAAAAGCTAGAAT+AGG + chr4_1:7856274-7856293 None:intergenic 25.0%
! AGTACTTATAAGCTAGAATA+GGG + chr4_1:7856314-7856333 None:intergenic 25.0%
! TAGTACTTATAAGCTAGAAT+AGG + chr4_1:7856315-7856334 None:intergenic 25.0%
! TTTAGTATTGGAAGGGAAAA+TGG - chr4_1:7850452-7850471 Msa0533140:intron 30.0%
CAACTTAGTTATAGTGATGA+AGG - chr4_1:7850522-7850541 Msa0533140:intron 30.0%
TTAGTTATAGTGATGAAGGT+TGG - chr4_1:7850526-7850545 Msa0533140:intron 30.0%
TAGTTATAGTGATGAAGGTT+GGG - chr4_1:7850527-7850546 Msa0533140:intron 30.0%
! GTTTTTCTCAATAGAGAACT+TGG - chr4_1:7850752-7850771 Msa0533140:intron 30.0%
GAACTTGGTATTGTGAATTA+TGG - chr4_1:7850767-7850786 Msa0533140:intron 30.0%
ATTCAATTAATAGAAGGCAG+TGG - chr4_1:7850901-7850920 Msa0533140:intron 30.0%
!! GTGTTGAGAACATTTTAAGT+AGG - chr4_1:7850929-7850948 Msa0533140:intron 30.0%
!! TTGAGAACATTTTAAGTAGG+TGG - chr4_1:7850932-7850951 Msa0533140:intron 30.0%
TTATGGTCCAGTTATATTAG+AGG + chr4_1:7850961-7850980 Msa0533150:intron 30.0%
ATAACAAAACTATAGCGTAG+TGG + chr4_1:7851165-7851184 Msa0533150:intron 30.0%
GTCACACATTAACTATACAT+AGG - chr4_1:7851248-7851267 Msa0533140:intron 30.0%
! TAGGCAGATATAATTTTGAG+AGG - chr4_1:7851267-7851286 Msa0533140:intron 30.0%
!! ATAATTTTGAGAGGATACTG+TGG - chr4_1:7851276-7851295 Msa0533140:intron 30.0%
ACTTGTGGAAGTAATTAATC+AGG - chr4_1:7851447-7851466 Msa0533140:intron 30.0%
CTTGTGGAAGTAATTAATCA+GGG - chr4_1:7851448-7851467 Msa0533140:intron 30.0%
AACAAAATCTTAGCCGTTAA+CGG - chr4_1:7851618-7851637 Msa0533140:intron 30.0%
AATAAGCGATACATAAGACT+TGG + chr4_1:7851722-7851741 Msa0533150:intron 30.0%
! TTTTCTCTGTATTCTTCAAG+GGG + chr4_1:7852091-7852110 Msa0533150:CDS 30.0%
CAATGTTTGACTAATCCTAA+TGG - chr4_1:7852185-7852204 Msa0533140:intron 30.0%
TGTTCACTCATACTTTATAG+TGG - chr4_1:7852313-7852332 Msa0533140:intron 30.0%
TTGACAAAGGACAACAAAAT+GGG + chr4_1:7852480-7852499 None:intergenic 30.0%
TTTGACAAAGGACAACAAAA+TGG + chr4_1:7852481-7852500 None:intergenic 30.0%
! AACTTTATGTGTCGACATAT+CGG + chr4_1:7852574-7852593 None:intergenic 30.0%
! ACTATATTCAGAAGCATGTT+TGG - chr4_1:7853063-7853082 Msa0533140:exon 30.0%
GCGGTAAAATAATGCTTATA+CGG + chr4_1:7853273-7853292 None:intergenic 30.0%
! CTTGATACATTTTATAGGGA+TGG - chr4_1:7853396-7853415 Msa0533140:intron 30.0%
AGTTGTGAAAGAGATATTGA+AGG - chr4_1:7853449-7853468 Msa0533140:intron 30.0%
! ACTTCCAGAAACATTTTGAA+TGG - chr4_1:7853598-7853617 Msa0533140:CDS 30.0%
! CTTCCAGAAACATTTTGAAT+GGG - chr4_1:7853599-7853618 Msa0533140:CDS 30.0%
TTTCCCATTCAAAATGTTTC+TGG + chr4_1:7853605-7853624 None:intergenic 30.0%
! TTCGACTAGTTCCAATTTAT+TGG + chr4_1:7854079-7854098 None:intergenic 30.0%
GGAATGATCGAGTATTTATT+AGG + chr4_1:7854214-7854233 None:intergenic 30.0%
!!! GTTTTTTAGAGATGTCGAAT+TGG + chr4_1:7854235-7854254 None:intergenic 30.0%
GAATGAAAAAACATCCTATG+AGG + chr4_1:7854367-7854386 None:intergenic 30.0%
ACAAATTATAACGCAGGTTT+AGG + chr4_1:7854417-7854436 None:intergenic 30.0%
!! GCATTATATTGCTAGCTTTA+AGG - chr4_1:7854442-7854461 Msa0533140:intron 30.0%
ACAAACACTACAAGAAATGA+TGG - chr4_1:7854582-7854601 Msa0533140:intron 30.0%
!!! AGGGTGTTTATGTTTTTTGA+GGG + chr4_1:7854890-7854909 None:intergenic 30.0%
!!! TAGGGTGTTTATGTTTTTTG+AGG + chr4_1:7854891-7854910 None:intergenic 30.0%
GAATTGTAGCGATAAAGAAT+AGG + chr4_1:7854910-7854929 None:intergenic 30.0%
!!! CTCGTGAAACATGTTTTTTA+AGG + chr4_1:7855004-7855023 None:intergenic 30.0%
AAAACAGGAACTTCATAATG+TGG + chr4_1:7855090-7855109 None:intergenic 30.0%
! ATTATGAAGTTCCTGTTTTG+TGG - chr4_1:7855091-7855110 Msa0533140:intron 30.0%
! TACAAAGTCTGTAATTTTCC+TGG + chr4_1:7855218-7855237 None:intergenic 30.0%
GATTTCTTAACAAGTACTTG+TGG + chr4_1:7855393-7855412 None:intergenic 30.0%
! GTACTTGTTAAGAAATCACA+AGG - chr4_1:7855396-7855415 Msa0533140:intron 30.0%
TTAAGAAATCACAAGGAGAA+AGG - chr4_1:7855403-7855422 Msa0533140:intron 30.0%
ATAACAGATCTAAGAAGTCT+AGG - chr4_1:7855542-7855561 Msa0533140:intron 30.0%
TTCAAGTAGGTGAAGAAATT+GGG - chr4_1:7855600-7855619 Msa0533140:intron 30.0%
TCATTTCCTGGAAAAATAGT+TGG + chr4_1:7855986-7856005 None:intergenic 30.0%
TTAGAAAAACAATTGGACGT+TGG - chr4_1:7856101-7856120 Msa0533140:intron 30.0%
! ATATAATGGAATATAGGACG+GGG + chr4_1:7856173-7856192 None:intergenic 30.0%
TGAAAGAAAAGCTAGAATAG+GGG + chr4_1:7856272-7856291 None:intergenic 30.0%
ACTATAACAAGTGCATGCAA+AGG - chr4_1:7850371-7850390 Msa0533140:three_prime_UTR 35.0%
! AACACAATTTGAGGCCTTAT+TGG + chr4_1:7850483-7850502 None:intergenic 35.0%
GAACCAAACAACACAATTTG+AGG + chr4_1:7850492-7850511 None:intergenic 35.0%
AGTTATAGTGATGAAGGTTG+GGG - chr4_1:7850528-7850547 Msa0533140:intron 35.0%
TACAAACTTGTATTCTCGCA+AGG - chr4_1:7850560-7850579 Msa0533140:intron 35.0%
GTGTGACAAGTTAAACTCAT+TGG + chr4_1:7851235-7851254 Msa0533150:intron 35.0%
TCTGGATACAATATTTCCCA+AGG - chr4_1:7851326-7851345 Msa0533140:intron 35.0%
AAATTGACAAGCTGATGCTA+TGG - chr4_1:7851476-7851495 Msa0533140:intron 35.0%
! AGATTTTGTTGCCGGTAATA+GGG + chr4_1:7851608-7851627 Msa0533150:intron 35.0%
! AAGATTTTGTTGCCGGTAAT+AGG + chr4_1:7851609-7851628 Msa0533150:intron 35.0%
AAGTACACAATAACCAACGA+TGG + chr4_1:7852016-7852035 Msa0533150:intron 35.0%
! TCGTTGGTTATTGTGTACTT+TGG - chr4_1:7852016-7852035 Msa0533140:intron 35.0%
TTGGTTATTGTGTACTTTGG+TGG - chr4_1:7852019-7852038 Msa0533140:intron 35.0%
TGTGGAATTCAACCTTAAGA+TGG + chr4_1:7852132-7852151 Msa0533150:CDS 35.0%
! CGAAAAAAACAGTGATAGTG+TGG + chr4_1:7852150-7852169 Msa0533150:CDS 35.0%
CACAAATTCACGAAACATTC+AGG - chr4_1:7852270-7852289 Msa0533140:intron 35.0%
CCTAAGATAGTGTTTGACAA+AGG + chr4_1:7852493-7852512 None:intergenic 35.0%
CCTTTGTCAAACACTATCTT+AGG - chr4_1:7852490-7852509 Msa0533140:intron 35.0%
GAAATATATGAGCCGTTTGT+GGG + chr4_1:7852718-7852737 None:intergenic 35.0%
TGAAATATATGAGCCGTTTG+TGG + chr4_1:7852719-7852738 None:intergenic 35.0%
! TCTCATGTAACTTTTGGTCA+TGG + chr4_1:7852776-7852795 None:intergenic 35.0%
!! TGAGATATATTGGTCTTCAG+AGG - chr4_1:7852791-7852810 Msa0533140:intron 35.0%
ATATATTGGGACCACTAAAG+AGG - chr4_1:7853023-7853042 Msa0533140:three_prime_UTR 35.0%
GATTCATTTGTCCTCTTTAG+TGG + chr4_1:7853037-7853056 None:intergenic 35.0%
TGCTTCTGAATATAGTCTAC+AGG + chr4_1:7853059-7853078 None:intergenic 35.0%
TACTTACGTGAAGCAAACAT+CGG + chr4_1:7853158-7853177 None:intergenic 35.0%
ACACAAGAACATGATATTGC+AGG + chr4_1:7853242-7853261 None:intergenic 35.0%
!! ATAGTTCTGAATCACAACTG+TGG + chr4_1:7853341-7853360 None:intergenic 35.0%
TGGAATTCATTTGTCACATG+AGG - chr4_1:7853416-7853435 Msa0533140:intron 35.0%
GGAATTCATTTGTCACATGA+GGG - chr4_1:7853417-7853436 Msa0533140:intron 35.0%
TTGATTTCCAGTGTAGACTT+GGG + chr4_1:7853497-7853516 None:intergenic 35.0%
! ATTGATTTCCAGTGTAGACT+TGG + chr4_1:7853498-7853517 None:intergenic 35.0%
GAATCTTCTGCAAACTCATT+TGG + chr4_1:7853522-7853541 None:intergenic 35.0%
TCTATAGCAACTGGATCATA+TGG + chr4_1:7853546-7853565 None:intergenic 35.0%
! GTCTTTTCATCTATAGCAAC+TGG + chr4_1:7853555-7853574 None:intergenic 35.0%
! TGACAGCTGATTCTTCAAAT+TGG + chr4_1:7853665-7853684 None:intergenic 35.0%
GAGAGAAGGAACCAATAAAT+TGG - chr4_1:7854065-7854084 Msa0533140:intron 35.0%
ACAATGGGATACATCATACA+TGG + chr4_1:7854334-7854353 None:intergenic 35.0%
AACGCAGGTTTAGGTAATTT+GGG + chr4_1:7854408-7854427 None:intergenic 35.0%
TAACGCAGGTTTAGGTAATT+TGG + chr4_1:7854409-7854428 None:intergenic 35.0%
CTTGACACAAATTATAACGC+AGG + chr4_1:7854423-7854442 None:intergenic 35.0%
GGTATTTAATCTAGAAAGGC+GGG + chr4_1:7854733-7854752 None:intergenic 35.0%
CGGTATTTAATCTAGAAAGG+CGG + chr4_1:7854734-7854753 None:intergenic 35.0%
CCTCGGTATTTAATCTAGAA+AGG + chr4_1:7854737-7854756 None:intergenic 35.0%
CCTTTCTAGATTAAATACCG+AGG - chr4_1:7854734-7854753 Msa0533140:CDS 35.0%
! AATACATAACTTGCATTCCG+AGG + chr4_1:7854768-7854787 None:intergenic 35.0%
!! CGTTTGTTATGACTTCAACT+GGG + chr4_1:7854820-7854839 None:intergenic 35.0%
GGATGATAAACAACACAAGT+AGG + chr4_1:7854869-7854888 None:intergenic 35.0%
CTTCTTTATTGATGCTGTTG+TGG + chr4_1:7855054-7855073 None:intergenic 35.0%
CACAACAGCATCAATAAAGA+AGG - chr4_1:7855052-7855071 Msa0533140:intron 35.0%
AACAGCATCAATAAAGAAGG+AGG - chr4_1:7855055-7855074 Msa0533140:intron 35.0%
! ATTTTCCTGGAAAAGATGCA+GGG + chr4_1:7855205-7855224 None:intergenic 35.0%
! AATTTTCCTGGAAAAGATGC+AGG + chr4_1:7855206-7855225 None:intergenic 35.0%
!! TCTCAGTCATTTTGCCTATT+AGG - chr4_1:7855260-7855279 Msa0533140:intron 35.0%
TATTGGTACTTATGGACAAG+TGG + chr4_1:7855361-7855380 None:intergenic 35.0%
AAAACAAATACAAAGGAGGC+TGG - chr4_1:7855487-7855506 Msa0533140:intron 35.0%
AGAATGTTGAGAAGAAATGG+TGG - chr4_1:7855571-7855590 Msa0533140:intron 35.0%
GTTCAAGTAGGTGAAGAAAT+TGG - chr4_1:7855599-7855618 Msa0533140:intron 35.0%
! TGATAACGTTTCTGATTCAG+TGG - chr4_1:7855735-7855754 Msa0533140:intron 35.0%
GGAAACAGATAATGAACCAA+CGG - chr4_1:7855756-7855775 Msa0533140:intron 35.0%
!! TTGCAACCAACTATTTTTCC+AGG - chr4_1:7855977-7855996 Msa0533140:intron 35.0%
AAGAAATCACTGAAATTCCG+AGG + chr4_1:7856068-7856087 None:intergenic 35.0%
!! TGCATGCACTTGTTATAGTC+AGG + chr4_1:7850370-7850389 None:intergenic 40.0%
GTATTGGAAGGGAAAATGGT+AGG - chr4_1:7850456-7850475 Msa0533140:intron 40.0%
GGAAAATGGTAGGACCAATA+AGG - chr4_1:7850466-7850485 Msa0533140:intron 40.0%
! AGGCCTCAAATTGTGTTGTT+TGG - chr4_1:7850486-7850505 Msa0533140:intron 40.0%
AAGAACAGTACTGCATGCAA+TGG - chr4_1:7850826-7850845 Msa0533140:intron 40.0%
! TGCAATGGAACAGTTCCTTT+TGG - chr4_1:7850841-7850860 Msa0533140:intron 40.0%
GTGGTGTCCTCTAATATAAC+TGG - chr4_1:7850951-7850970 Msa0533140:intron 40.0%
!! TTTTGAGAGGATACTGTGGT+TGG - chr4_1:7851280-7851299 Msa0533140:intron 40.0%
GATACTGTGGTTGGAATTCA+AGG - chr4_1:7851289-7851308 Msa0533140:intron 40.0%
TGGAAGTAATTAATCAGGGC+TGG - chr4_1:7851452-7851471 Msa0533140:intron 40.0%
TATGTATGTGACTGACCAGT+TGG - chr4_1:7851570-7851589 Msa0533140:intron 40.0%
! GATTTTGTTGCCGGTAATAG+GGG + chr4_1:7851607-7851626 Msa0533150:intron 40.0%
! AACGGCTAAGATTTTGTTGC+CGG + chr4_1:7851616-7851635 Msa0533150:intron 40.0%
GATCACCTATAGTCATTGTG+TGG - chr4_1:7851758-7851777 Msa0533140:intron 40.0%
ATGCACCACACAATGACTAT+AGG + chr4_1:7851766-7851785 Msa0533150:intron 40.0%
ATAGTCATTGTGTGGTGCAT+TGG - chr4_1:7851766-7851785 Msa0533140:intron 40.0%
TCTATTCATCCACATCCATC+TGG - chr4_1:7852049-7852068 Msa0533140:intron 40.0%
! TATTCTTCAAGGGGTACATG+AGG + chr4_1:7852082-7852101 Msa0533150:CDS 40.0%
TTATGCGAGTCTTCTTTGAC+AGG + chr4_1:7852220-7852239 Msa0533150:intron 40.0%
TGAATTTGTGCCTCATTGAC+TGG + chr4_1:7852260-7852279 Msa0533150:intron 40.0%
!! ATGGGCATTGACACATTCAT+TGG + chr4_1:7852646-7852665 None:intergenic 40.0%
! TGATTTTGCAGACACAATCG+CGG + chr4_1:7852838-7852857 None:intergenic 40.0%
CGATTGTGTCTGCAAAATCA+AGG - chr4_1:7852838-7852857 Msa0533140:intron 40.0%
! AAAATCAAGGTTTTCGCCTC+TGG - chr4_1:7852851-7852870 Msa0533140:intron 40.0%
! AAATCAAGGTTTTCGCCTCT+GGG - chr4_1:7852852-7852871 Msa0533140:intron 40.0%
!! ATGTTTCTGGAAGTTCCAGT+TGG + chr4_1:7853592-7853611 None:intergenic 40.0%
TGCATTTCCAAACCATCGAA+TGG - chr4_1:7853633-7853652 Msa0533140:CDS 40.0%
!! AATTGGTGATGACCATTCGA+TGG + chr4_1:7853648-7853667 None:intergenic 40.0%
!! TATGCTAAGAGCATCCACAA+TGG - chr4_1:7854110-7854129 Msa0533140:intron 40.0%
AGAGAATAGAGATGTCGCAT+TGG + chr4_1:7854279-7854298 None:intergenic 40.0%
! TGAGGAGTACAAGGTACAAT+GGG + chr4_1:7854349-7854368 None:intergenic 40.0%
! ATGAGGAGTACAAGGTACAA+TGG + chr4_1:7854350-7854369 None:intergenic 40.0%
TTGTACCTTGTACTCCTCAT+AGG - chr4_1:7854350-7854369 Msa0533140:intron 40.0%
! AACATCCTATGAGGAGTACA+AGG + chr4_1:7854358-7854377 None:intergenic 40.0%
!! GTTGTACACACGCCATTTTA+TGG - chr4_1:7854464-7854483 Msa0533140:intron 40.0%
GCAGTACTGTCACCATAAAA+TGG + chr4_1:7854479-7854498 None:intergenic 40.0%
GCACTATAGAGTGAAATGAG+TGG + chr4_1:7854559-7854578 None:intergenic 40.0%
CTCATTTCACTCTATAGTGC+AGG - chr4_1:7854559-7854578 Msa0533140:intron 40.0%
ATTCCGACCAAAAAATTCCG+AGG - chr4_1:7854607-7854626 Msa0533140:intron 40.0%
!!! GTTCCTCGGAATTTTTTGGT+CGG + chr4_1:7854613-7854632 None:intergenic 40.0%
!!! GATGGTTCCTCGGAATTTTT+TGG + chr4_1:7854617-7854636 None:intergenic 40.0%
CTCTATTTAGCGAGAAACGA+TGG + chr4_1:7854635-7854654 None:intergenic 40.0%
CATCGTTTCTCGCTAAATAG+AGG - chr4_1:7854633-7854652 Msa0533140:CDS 40.0%
GCTAAATAGAGGTAATTCCG+AGG - chr4_1:7854644-7854663 Msa0533140:CDS 40.0%
!! ATTCCGAGGAACTTTTTCCT+CGG - chr4_1:7854658-7854677 Msa0533140:CDS 40.0%
ATACCGAGGAAAAAGTTCCT+CGG + chr4_1:7854748-7854767 None:intergenic 40.0%
! GGTCATACTGATTATGCAGT+GGG + chr4_1:7854712-7854731 None:intergenic 40.0%
ATACCGAGGAAAAAGTTCCT+CGG - chr4_1:7854748-7854767 Msa0533140:intron 40.0%
!! ATTCCGAGGAACTTTTTCCT+CGG + chr4_1:7854658-7854677 None:intergenic 40.0%
TTAGCACGCTTTGTCAGTAT+TGG - chr4_1:7854790-7854809 Msa0533140:intron 40.0%
!! GCGTTTGTTATGACTTCAAC+TGG + chr4_1:7854821-7854840 None:intergenic 40.0%
TTCACGAGAGAAAGATAGAG+AGG - chr4_1:7855016-7855035 Msa0533140:intron 40.0%
CTAAACTCTTGCCACAAAAC+AGG + chr4_1:7855105-7855124 None:intergenic 40.0%
! CTGTTTTGTGGCAAGAGTTT+AGG - chr4_1:7855103-7855122 Msa0533140:intron 40.0%
! TTTTCCTGGAAAAGATGCAG+GGG + chr4_1:7855204-7855223 None:intergenic 40.0%
CTTAGTCATCAACTCATCAG+TGG + chr4_1:7855303-7855322 None:intergenic 40.0%
ATCACAAGGAGAAAGGAAAG+AGG - chr4_1:7855410-7855429 Msa0533140:intron 40.0%
AGGCTGGATTTACATCAAAC+AGG - chr4_1:7855503-7855522 Msa0533140:intron 40.0%
GGCTGGATTTACATCAAACA+GGG - chr4_1:7855504-7855523 Msa0533140:intron 40.0%
! ATGGTGGAAGTTGTTCAAGT+AGG - chr4_1:7855587-7855606 Msa0533140:intron 40.0%
! TGAGGTTGCTGTTAGACAAA+TGG - chr4_1:7855623-7855642 Msa0533140:intron 40.0%
CAGCGTTTCTGATTCTTCTA+TGG - chr4_1:7855646-7855665 Msa0533140:intron 40.0%
!! ACAATGAACTTGTTAACCGG+AGG - chr4_1:7855672-7855691 Msa0533140:intron 40.0%
TTTCCAAGGAACTTTGTCCT+CGG + chr4_1:7855842-7855861 None:intergenic 40.0%
GCTGTCAAATCAATATTCCG+AGG - chr4_1:7855903-7855922 Msa0533140:intron 40.0%
AAGTTCCTCGGAAATTTCCT+CGG - chr4_1:7855946-7855965 Msa0533140:intron 40.0%
TCGGAAATTTCCTCGGTAAT+GGG - chr4_1:7855953-7855972 Msa0533140:intron 40.0%
TTTCCAGGAAATGAGTTCCT+CGG - chr4_1:7855992-7856011 Msa0533140:intron 40.0%
! GGTAATCGTCTATTTCTCCT+CGG + chr4_1:7856032-7856051 None:intergenic 40.0%
TATGCCAGTGTTGTCAATCG+CGG - chr4_1:7851110-7851129 Msa0533140:intron 45.0%
TCATCCAAAGCCCCTATTAC+CGG - chr4_1:7851594-7851613 Msa0533140:intron 45.0%
GGTAAAAGTAGGGAGCGATT+TGG + chr4_1:7851884-7851903 Msa0533150:intron 45.0%
! ATTTGTGCCTCATTGACTGG+AGG + chr4_1:7852257-7852276 Msa0533150:intron 45.0%
! GCACCTTTGATCTGAAGTGT+CGG + chr4_1:7852543-7852562 None:intergenic 45.0%
! TGTGTCGACATATCGGTATC+AGG + chr4_1:7852567-7852586 None:intergenic 45.0%
! AATCAAGGTTTTCGCCTCTG+GGG - chr4_1:7852853-7852872 Msa0533140:intron 45.0%
GTGCCATGAGATGAATGTCA+AGG - chr4_1:7853090-7853109 Msa0533140:CDS 45.0%
! TGGCCTTGACATTCATCTCA+TGG + chr4_1:7853096-7853115 None:intergenic 45.0%
CACTTCAGCAAAGGGATGAT+TGG - chr4_1:7853131-7853150 Msa0533140:CDS 45.0%
CTACTGTCAATGTCTCCAAC+TGG - chr4_1:7853574-7853593 Msa0533140:intron 45.0%
GTGATGACCATTCGATGGTT+TGG + chr4_1:7853643-7853662 None:intergenic 45.0%
AAATGTTAACGAGTGCCCCT+GGG + chr4_1:7853802-7853821 None:intergenic 45.0%
AAAATGTTAACGAGTGCCCC+TGG + chr4_1:7853803-7853822 None:intergenic 45.0%
TACTTTACGAGAGCGAGAGA+AGG - chr4_1:7854051-7854070 Msa0533140:intron 45.0%
GTTCTTAAATGGATCACGCG+TGG - chr4_1:7854140-7854159 Msa0533140:intron 45.0%
CTCTTGTAGCTCTTCCAATG+TGG - chr4_1:7854262-7854281 Msa0533140:intron 45.0%
CTTCCAATGTGGAAACACTC+TGG - chr4_1:7854306-7854325 Msa0533140:intron 45.0%
ATGAGTGGATGAGATTCCAC+TGG + chr4_1:7854544-7854563 None:intergenic 45.0%
! GGGTCATACTGATTATGCAG+TGG + chr4_1:7854713-7854732 None:intergenic 45.0%
! GATGCTGTTGTGGTGTGTTT+TGG + chr4_1:7855044-7855063 None:intergenic 45.0%
TTTCCTGGAAAAGATGCAGG+GGG + chr4_1:7855203-7855222 None:intergenic 45.0%
GTAGGTGAAGAAATTGGGTG+AGG - chr4_1:7855605-7855624 Msa0533140:intron 45.0%
! TTGTTAACCGGAGGTGTGTA+TGG - chr4_1:7855681-7855700 Msa0533140:intron 45.0%
! TGTTAACCGGAGGTGTGTAT+GGG - chr4_1:7855682-7855701 Msa0533140:intron 45.0%
ATTCCGAGGACAAAGTTCCT+TGG - chr4_1:7855836-7855855 Msa0533140:intron 45.0%
ATTCCGAGGACATTCTTCCT+CGG - chr4_1:7855917-7855936 Msa0533140:intron 45.0%
TTTCCGAGGAAGAATGTCCT+CGG + chr4_1:7855923-7855942 None:intergenic 45.0%
CCTCGGAAACAAAAGTTCCT+CGG - chr4_1:7855934-7855953 Msa0533140:intron 45.0%
CATTACCGAGGAAATTTCCG+AGG + chr4_1:7855954-7855973 None:intergenic 45.0%
CTCGGAAATTTCCTCGGTAA+TGG - chr4_1:7855952-7855971 Msa0533140:intron 45.0%
TTTCCGAGGAACTCATTTCC+TGG + chr4_1:7855998-7856017 None:intergenic 45.0%
GGAGAAATAGACGATTACCC+AGG - chr4_1:7856033-7856052 Msa0533140:intron 45.0%
TTTCACTGGACATGGTGAAG+TGG + chr4_1:7856133-7856152 None:intergenic 45.0%
CTTCACCATGTCCAGTGAAA+AGG - chr4_1:7856133-7856152 Msa0533140:intron 45.0%
CATGTCCAGTGAAAAGGACA+CGG - chr4_1:7856139-7856158 Msa0533140:intron 45.0%
ATGTCCAGTGAAAAGGACAC+GGG - chr4_1:7856140-7856159 Msa0533140:intron 45.0%
!!! TTATTTTGATAATAAATAAA+AGG + chr4_1:7853826-7853845 None:intergenic 5.0%
!! AATAATTTGAAAATATATAA+TGG + chr4_1:7856187-7856206 None:intergenic 5.0%
CTATCCGCGATTGACAACAC+TGG + chr4_1:7851117-7851136 Msa0533150:intron 50.0%
! GAATTCAAGGCGTGCTGTTC+AGG - chr4_1:7851302-7851321 Msa0533140:intron 50.0%
AACTGTTGCGCGATACTGCA+CGG - chr4_1:7851674-7851693 Msa0533140:intron 50.0%
!! GCATTGGCTTGTAGTTCCGT+TGG - chr4_1:7851782-7851801 Msa0533140:intron 50.0%
CACCATACAGAAGCCGAAGA+GGG - chr4_1:7851857-7851876 Msa0533140:intron 50.0%
TGCTGTTGAGCAACCATCGT+TGG - chr4_1:7852000-7852019 Msa0533140:intron 50.0%
!! GACAGGCTCTGGAAACCATT+AGG + chr4_1:7852203-7852222 Msa0533150:intron 50.0%
GAGTCTTCTTTGACAGGCTC+TGG + chr4_1:7852214-7852233 Msa0533150:intron 50.0%
CAGTTCTCCTCCAGTCAATG+AGG - chr4_1:7852247-7852266 Msa0533140:intron 50.0%
!! GAAGTGTCGGTGCTACGTAT+AGG + chr4_1:7852530-7852549 None:intergenic 50.0%
! GCACCGACACTTCAGATCAA+AGG - chr4_1:7852537-7852556 Msa0533140:intron 50.0%
TGCAGACACAATCGCGGTTA+TGG + chr4_1:7852832-7852851 None:intergenic 50.0%
ATGTCAAGGCCATTGACCTC+TGG - chr4_1:7853104-7853123 Msa0533140:CDS 50.0%
AAGTGCAGACCAGAGGTCAA+TGG + chr4_1:7853116-7853135 None:intergenic 50.0%
TTTGCTGAAGTGCAGACCAG+AGG + chr4_1:7853123-7853142 None:intergenic 50.0%
TCTGGTCTGCACTTCAGCAA+AGG - chr4_1:7853122-7853141 Msa0533140:CDS 50.0%
CTGGTCTGCACTTCAGCAAA+GGG - chr4_1:7853123-7853142 Msa0533140:CDS 50.0%
GTGTAGACTTGGGTTCCAGT+CGG + chr4_1:7853487-7853506 None:intergenic 50.0%
ACTGGAACCCAAGTCTACAC+TGG - chr4_1:7853487-7853506 Msa0533140:intron 50.0%
AATGTTAACGAGTGCCCCTG+GGG + chr4_1:7853801-7853820 None:intergenic 50.0%
! GCACCAGAGTGTTTCCACAT+TGG + chr4_1:7854312-7854331 None:intergenic 50.0%
TGGACTCTCCAGTCATTGGA+GGG + chr4_1:7854524-7854543 None:intergenic 50.0%
AGCGAGAAACGATGGTTCCT+CGG + chr4_1:7854627-7854646 None:intergenic 50.0%
TTCCTCGGTATGCACATGTC+AGG - chr4_1:7854673-7854692 Msa0533140:CDS 50.0%
TTCCTGACATGTGCATACCG+AGG + chr4_1:7854678-7854697 None:intergenic 50.0%
! GTTAACCGGAGGTGTGTATG+GGG - chr4_1:7855683-7855702 Msa0533140:intron 50.0%
!! CCGAGGAACTTTTGTTTCCG+AGG + chr4_1:7855937-7855956 None:intergenic 50.0%
TGGTTGCAATCCCATTACCG+AGG + chr4_1:7855966-7855985 None:intergenic 50.0%
!!! CGGAATGTCGCTTTTTTCCG+AGG + chr4_1:7856012-7856031 None:intergenic 50.0%
CGGAAAAAAGCGACATTCCG+AGG - chr4_1:7856012-7856031 Msa0533140:intron 50.0%
!! TACCCAGGAGTTTTGTGCCT+CGG - chr4_1:7856048-7856067 Msa0533140:intron 50.0%
TTCCGAGGCACAAAACTCCT+GGG + chr4_1:7856053-7856072 None:intergenic 50.0%
ATTCCGAGGCACAAAACTCC+TGG + chr4_1:7856054-7856073 None:intergenic 50.0%
! CGTGTCCTTTTCACTGGACA+TGG + chr4_1:7856141-7856160 None:intergenic 50.0%
! AAGGCGTGCTGTTCAGGTTC+TGG - chr4_1:7851308-7851327 Msa0533140:intron 55.0%
!! GGGGCTTTGGATGATCCAAC+TGG + chr4_1:7851588-7851607 Msa0533150:intron 55.0%
GTTGCCGGTAATAGGGGCTT+TGG + chr4_1:7851601-7851620 Msa0533150:intron 55.0%
GTGCAGTATCGCGCAACAGT+TGG + chr4_1:7851675-7851694 Msa0533150:CDS 55.0%
ACTGTTGCGCGATACTGCAC+GGG - chr4_1:7851675-7851694 Msa0533140:intron 55.0%
GCACCATACAGAAGCCGAAG+AGG - chr4_1:7851856-7851875 Msa0533140:intron 55.0%
GACCCTCTTCGGCTTCTGTA+TGG + chr4_1:7851862-7851881 Msa0533150:intron 55.0%
! GGAGCGATTTGGACCCTCTT+CGG + chr4_1:7851873-7851892 Msa0533150:intron 55.0%
CATCCACATCCATCTGGCCT+TGG - chr4_1:7852055-7852074 Msa0533140:intron 55.0%
ACATGAGGACCAAGGCCAGA+TGG + chr4_1:7852067-7852086 Msa0533150:CDS 55.0%
! CAAGGGGTACATGAGGACCA+AGG + chr4_1:7852075-7852094 Msa0533150:CDS 55.0%
TGAGCCGTTTGTGGGTGTGT+GGG + chr4_1:7852710-7852729 None:intergenic 55.0%
ATGAGCCGTTTGTGGGTGTG+TGG + chr4_1:7852711-7852730 None:intergenic 55.0%
!!! TTTCGCCTCTGGGGCTTTTG+TGG - chr4_1:7852862-7852881 Msa0533140:intron 55.0%
ACTCTCCAGTCATTGGAGGG+GGG + chr4_1:7854521-7854540 None:intergenic 55.0%
GACTCTCCAGTCATTGGAGG+GGG + chr4_1:7854522-7854541 None:intergenic 55.0%
GGACTCTCCAGTCATTGGAG+GGG + chr4_1:7854523-7854542 None:intergenic 55.0%
CTGGACTCTCCAGTCATTGG+AGG + chr4_1:7854525-7854544 None:intergenic 55.0%
CCACTGGACTCTCCAGTCAT+TGG + chr4_1:7854528-7854547 None:intergenic 55.0%
CCAATGACTGGAGAGTCCAG+TGG - chr4_1:7854525-7854544 Msa0533140:CDS 55.0%
! TCTCCCCCTGCATCTTTTCC+AGG - chr4_1:7855197-7855216 Msa0533140:intron 55.0%
GTGTCAGTCGCATCAGTCTG+TGG - chr4_1:7855876-7855895 Msa0533140:intron 55.0%
! CTCTCCCGTGTCCTTTTCAC+TGG + chr4_1:7856147-7856166 None:intergenic 55.0%
TTGCGCGATACTGCACGGGA+TGG - chr4_1:7851679-7851698 Msa0533140:intron 60.0%
GGACCAAGGCCAGATGGATG+TGG + chr4_1:7852061-7852080 Msa0533150:CDS 60.0%
AGCCGTTTGTGGGTGTGTGG+GGG + chr4_1:7852708-7852727 None:intergenic 60.0%
GAGCCGTTTGTGGGTGTGTG+GGG + chr4_1:7852709-7852728 None:intergenic 60.0%
TTTAACGAGTGCCCCTCCCC+AGG - chr4_1:7853782-7853801 Msa0533140:intron 60.0%
TTAACGAGTGCCCCTCCCCA+GGG - chr4_1:7853783-7853802 Msa0533140:intron 60.0%
TTAACGAGTGCCCCTGGGGA+GGG + chr4_1:7853797-7853816 None:intergenic 60.0%
TTGGAGGGGGGTCTGTTTGC+TGG + chr4_1:7854509-7854528 None:intergenic 60.0%
ACAGACCCCCCTCCAATGAC+TGG - chr4_1:7854513-7854532 Msa0533140:CDS 60.0%
CACGACCCCATACACACCTC+CGG + chr4_1:7855691-7855710 None:intergenic 60.0%
GGTGTGTATGGGGTCGTGAG+AGG - chr4_1:7855693-7855712 Msa0533140:intron 60.0%
GTGTATGGGGTCGTGAGAGG+CGG - chr4_1:7855696-7855715 Msa0533140:intron 60.0%
CGCGATACTGCACGGGATGG+AGG - chr4_1:7851682-7851701 Msa0533140:intron 65.0%
TTTGTGGGTGTGTGGGGGGG+GGG + chr4_1:7852703-7852722 None:intergenic 65.0%
GTTTGTGGGTGTGTGGGGGG+GGG + chr4_1:7852704-7852723 None:intergenic 65.0%
CGTTTGTGGGTGTGTGGGGG+GGG + chr4_1:7852705-7852724 None:intergenic 65.0%
CCGTTTGTGGGTGTGTGGGG+GGG + chr4_1:7852706-7852725 None:intergenic 65.0%
CCCCCCCACACACCCACAAA+CGG - chr4_1:7852703-7852722 Msa0533140:intron 65.0%
GCCGTTTGTGGGTGTGTGGG+GGG + chr4_1:7852707-7852726 None:intergenic 65.0%
CGACGCCACAAAAGCCCCAG+AGG + chr4_1:7852870-7852889 None:intergenic 65.0%
AGGTCCTCGAAGACGCCGAC+TGG - chr4_1:7853469-7853488 Msa0533140:intron 65.0%
GGTTCCAGTCGGCGTCTTCG+AGG + chr4_1:7853476-7853495 None:intergenic 65.0%
TAACGAGTGCCCCTCCCCAG+GGG - chr4_1:7853784-7853803 Msa0533140:intron 65.0%
TAACGAGTGCCCCTGGGGAG+GGG + chr4_1:7853796-7853815 None:intergenic 65.0%
GTTAACGAGTGCCCCTGGGG+AGG + chr4_1:7853798-7853817 None:intergenic 65.0%
TTGTGGGTGTGTGGGGGGGG+GGG + chr4_1:7852702-7852721 None:intergenic 70.0%
TGTGGGTGTGTGGGGGGGGG+GGG + chr4_1:7852701-7852720 None:intergenic 75.0%
! TGGGTGTGTGGGGGGGGGGG+GGG + chr4_1:7852699-7852718 None:intergenic 80.0%
! GTGGGTGTGTGGGGGGGGGG+GGG + chr4_1:7852700-7852719 None:intergenic 80.0%
! TGTGTGGGGGGGGGGGGGGG+GGG + chr4_1:7852695-7852714 None:intergenic 85.0%
! GTGTGTGGGGGGGGGGGGGG+GGG + chr4_1:7852696-7852715 None:intergenic 85.0%
! GGTGTGTGGGGGGGGGGGGG+GGG + chr4_1:7852697-7852716 None:intergenic 85.0%
! GGGTGTGTGGGGGGGGGGGG+GGG + chr4_1:7852698-7852717 None:intergenic 85.0%
! TGTGGGGGGGGGGGGGGGGG+GGG + chr4_1:7852693-7852712 None:intergenic 90.0%
! GTGTGGGGGGGGGGGGGGGG+GGG + chr4_1:7852694-7852713 None:intergenic 90.0%
! GTGGGGGGGGGGGGGGGGGG+GGG + chr4_1:7852692-7852711 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 7850344 7856418 7850344 ID=Msa0533140;Name=Msa0533140
chr4_1 mRNA 7850344 7856418 7850344 ID=Msa0533140-mRNA-1;Parent=Msa0533140;Name=Msa0533140-mRNA-1;_AED=0.34;_eAED=0.34;_QI=127|1|1|1|0.83|0.71|7|153|280
chr4_1 exon 7850344 7850440 7850344 ID=Msa0533140-mRNA-1:exon:2725;Parent=Msa0533140-mRNA-1
chr4_1 exon 7853008 7853349 7853008 ID=Msa0533140-mRNA-1:exon:2724;Parent=Msa0533140-mRNA-1
chr4_1 exon 7853592 7853741 7853592 ID=Msa0533140-mRNA-1:exon:2723;Parent=Msa0533140-mRNA-1
chr4_1 exon 7854471 7854547 7854471 ID=Msa0533140-mRNA-1:exon:2722;Parent=Msa0533140-mRNA-1
chr4_1 exon 7854624 7854764 7854624 ID=Msa0533140-mRNA-1:exon:2721;Parent=Msa0533140-mRNA-1
chr4_1 exon 7855415 7855492 7855415 ID=Msa0533140-mRNA-1:exon:2720;Parent=Msa0533140-mRNA-1
chr4_1 exon 7856181 7856418 7856181 ID=Msa0533140-mRNA-1:exon:2719;Parent=Msa0533140-mRNA-1
chr4_1 five_prime_UTR 7856292 7856418 7856292 ID=Msa0533140-mRNA-1:five_prime_utr;Parent=Msa0533140-mRNA-1
chr4_1 CDS 7856181 7856291 7856181 ID=Msa0533140-mRNA-1:cds;Parent=Msa0533140-mRNA-1
chr4_1 CDS 7855415 7855492 7855415 ID=Msa0533140-mRNA-1:cds;Parent=Msa0533140-mRNA-1
chr4_1 CDS 7854624 7854764 7854624 ID=Msa0533140-mRNA-1:cds;Parent=Msa0533140-mRNA-1
chr4_1 CDS 7854471 7854547 7854471 ID=Msa0533140-mRNA-1:cds;Parent=Msa0533140-mRNA-1
chr4_1 CDS 7853592 7853741 7853592 ID=Msa0533140-mRNA-1:cds;Parent=Msa0533140-mRNA-1
chr4_1 CDS 7853064 7853349 7853064 ID=Msa0533140-mRNA-1:cds;Parent=Msa0533140-mRNA-1
chr4_1 three_prime_UTR 7853008 7853063 7853008 ID=Msa0533140-mRNA-1:three_prime_utr;Parent=Msa0533140-mRNA-1
chr4_1 three_prime_UTR 7850344 7850440 7850344 ID=Msa0533140-mRNA-1:three_prime_utr;Parent=Msa0533140-mRNA-1
Gene Sequence

>Msa0533140

ATGGTAGGACCAATAAGGCCTCAAATTGTGTTGTTTGGTTCTTCCATTGTTCAACTTAGTTATAGTGATGAAGGTTGGGGATCTATTCTTACAAACTTGTATTCTCGCAAGGCAGATATAATTTTGAGAGGATACTGTGGTTGGAATTCAAGGCGTGCTGTTCAGGTTCTGGATACAATATTTCCCAAGAATGCTGTTGAGCAACCATCGTTGGTTATTGTGTACTTTGGTGGCAATGATTCTATTCATCCACATCCATCTGGCCTTGGTCCTCATGTACCCCTTGAAGAATACAGAGAAAATATGAAGAAGATTATTATCCATCTTAAGAGCCTGTCAAAGAAGACTCGCATAATATTGCTCAGTTCTCCTCCAGTCAATGAGGCACAAATTCACGAAACATTCAGTAATATATTGGGACCACTAAAGAGGACAAATGAATCCTGTAGACTATATTCAGAAGCATGTTTGGACTTGTGCCATGAGATGAATGTCAAGGCCATTGACCTCTGGTCTGCACTTCAGCAAAGGGATGATTGGTCCGATGTTTGCTTCACGGATGGAATTCATTTGTCACATGAGGGTAGCAAGATAGTTGTGAAAGAGATATTGAAGGTCCTCGAAGACGCCGACTGGAACCCAAGTCTACACTGGAAATCAATGCCAAATGAGTTTGCAGAAGATTCGCCATATGATCCAGTTGCTATAGATGAAAAGACTACTGTCAATGTCTCCAACTGGAACTTCCAGAAACATTTTGAATGGGAAAAAGCGTTGTGCATTTCCAAACCATCGAATGGTCATCACCAATTTGAAGAATCAGCTGTCACAAACTATAACTGA

Protein sequence

>Msa0533140

MVGPIRPQIVLFGSSIVQLSYSDEGWGSILTNLYSRKADIILRGYCGWNSRRAVQVLDTIFPKNAVEQPSLVIVYFGGNDSIHPHPSGLGPHVPLEEYRENMKKIIIHLKSLSKKTRIILLSSPPVNEAQIHETFSNILGPLKRTNESCRLYSEACLDLCHEMNVKAIDLWSALQQRDDWSDVCFTDGIHLSHEGSKIVVKEILKVLEDADWNPSLHWKSMPNEFAEDSPYDPVAIDEKTTVNVSNWNFQKHFEWEKALCISKPSNGHHQFEESAVTNYN*