AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0974660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0974660 MtrunA17_Chr6g0453341 100.000 244 0 0 1 244 11 254 0.0 500
Msa0974660 MtrunA17_Chr7g0217661 86.475 244 31 1 1 244 1 242 3.83e-156 433
Msa0974660 MtrunA17_Chr5g0417701 75.200 250 51 3 1 242 1 247 3.34e-135 380
Msa0974660 MtrunA17_Chr4g0042521 75.299 251 51 3 1 243 1 248 2.34e-133 375
Msa0974660 MtrunA17_Chr3g0128801 79.464 224 38 1 27 242 30 253 7.38e-131 369
Msa0974660 MtrunA17_Chr3g0092071 76.856 229 45 1 22 242 19 247 5.77e-130 367
Msa0974660 MtrunA17_Chr3g0128791 79.018 224 39 1 27 242 30 253 1.32e-129 366
Msa0974660 MtrunA17_Chr5g0432611 69.512 246 64 3 8 242 6 251 3.85e-126 357
Msa0974660 MtrunA17_Chr3g0107311 71.020 245 60 2 6 242 13 254 1.07e-124 354
Msa0974660 MtrunA17_Chr3g0107291 70.204 245 62 2 6 242 19 260 2.45e-123 350
Msa0974660 MtrunA17_Chr7g0238681 69.333 225 59 2 28 242 32 256 1.48e-113 326
Msa0974660 MtrunA17_Chr5g0435311 64.257 249 78 3 4 242 59 306 5.99e-113 326
Msa0974660 MtrunA17_Chr4g0031621 62.698 252 84 2 1 242 5 256 3.50e-110 317
Msa0974660 MtrunA17_Chr2g0328261 67.556 225 63 2 28 242 34 258 2.71e-109 315
Msa0974660 MtrunA17_Chr1g0193631 64.889 225 67 4 28 240 30 254 1.28e-105 306
Msa0974660 MtrunA17_Chr7g0271001 59.036 249 89 5 1 237 1 248 1.26e-101 295
Msa0974660 MtrunA17_Chr1g0157061 59.908 217 76 3 35 240 22 238 5.57e-95 278
Msa0974660 MtrunA17_Chr7g0218741 53.200 250 107 4 1 241 3 251 4.27e-90 266
Msa0974660 MtrunA17_Chr7g0218751 58.824 221 83 2 28 240 28 248 1.51e-88 262
Msa0974660 MtrunA17_Chr8g0360041 58.182 220 84 2 28 239 31 250 1.00e-87 260
Msa0974660 MtrunA17_Chr4g0069711 54.464 224 89 4 28 240 61 282 1.79e-86 258
Msa0974660 MtrunA17_Chr5g0433841 53.097 226 97 2 28 244 41 266 9.67e-85 253
Msa0974660 MtrunA17_Chr4g0021561 47.451 255 120 4 1 242 3 256 2.34e-83 249
Msa0974660 MtrunA17_Chr7g0218761 58.911 202 75 2 47 240 8 209 5.17e-82 244
Msa0974660 MtrunA17_Chr5g0398271 54.464 224 90 4 28 240 37 259 1.91e-80 242
Msa0974660 MtrunA17_Chr4g0057091 50.813 246 108 4 6 238 11 256 1.82e-79 239
Msa0974660 MtrunA17_Chr8g0360721 57.789 199 76 2 47 237 17 215 2.07e-78 235
Msa0974660 MtrunA17_Chr3g0109801 50.000 232 99 5 28 242 53 284 4.28e-74 226
Msa0974660 MtrunA17_Chr4g0022851 54.839 124 46 4 1 114 1 124 8.76e-38 128
Msa0974660 MtrunA17_Chr4g0022841 50.862 116 57 0 124 239 1 116 2.58e-37 127
Msa0974660 MtrunA17_Chr2g0324191 44.898 147 69 4 6 142 8 152 7.80e-36 124
Msa0974660 MtrunA17_Chr2g0324181 53.465 101 47 0 142 242 17 117 3.93e-33 116
Msa0974660 MtrunA17_Chr2g0324221 33.778 225 133 7 28 240 35 255 4.79e-29 110
Msa0974660 MtrunA17_Chr2g0324201 32.540 252 154 8 1 240 6 253 1.29e-27 106
Msa0974660 MtrunA17_Chr4g0021641 32.751 229 138 8 28 244 41 265 9.78e-27 104
Msa0974660 MtrunA17_Chr8g0359981 62.500 80 23 4 70 142 2 81 2.86e-26 99.0
Msa0974660 MtrunA17_Chr4g0012801 33.624 229 127 9 25 237 39 258 8.76e-26 101
Msa0974660 MtrunA17_Chr7g0231221 31.674 221 131 9 33 237 53 269 1.85e-23 95.5
Msa0974660 MtrunA17_Chr7g0231211 31.858 226 130 10 28 237 47 264 2.07e-23 95.5
Msa0974660 MtrunA17_Chr4g0055601 29.148 223 146 8 28 240 28 248 2.12e-19 84.3
Msa0974660 MtrunA17_Chr8g0359971 50.649 77 37 1 163 238 1 77 3.60e-19 79.3
Msa0974660 MtrunA17_Chr4g0055061 30.837 227 131 11 28 237 29 246 1.94e-17 79.0
Msa0974660 MtrunA17_Chr5g0399811 28.251 223 147 9 28 240 29 248 9.25e-17 77.0
Msa0974660 MtrunA17_Chr1g0193571 59.259 54 22 0 187 240 4 57 3.57e-16 70.9
Msa0974660 MtrunA17_Chr4g0055561 28.507 221 143 9 28 237 28 244 5.11e-16 75.1
Msa0974660 MtrunA17_Chr4g0038741 29.817 218 122 9 39 237 32 237 7.34e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0974660 AT2G03090.1 76.190 252 48 3 1 242 3 252 2.33e-138 389
Msa0974660 AT3G29030.1 83.028 218 36 1 28 244 38 255 9.81e-137 385
Msa0974660 AT1G69530.2 76.000 250 51 2 1 242 1 249 5.78e-136 382
Msa0974660 AT1G69530.1 76.000 250 51 2 1 242 1 249 5.78e-136 382
Msa0974660 AT1G26770.1 76.800 250 48 2 1 242 1 248 3.51e-135 380
Msa0974660 AT1G26770.2 76.800 250 48 2 1 242 11 258 4.06e-135 381
Msa0974660 AT1G69530.3 76.423 246 49 2 1 238 1 245 1.14e-134 380
Msa0974660 AT5G56320.1 68.526 251 70 2 1 242 1 251 1.54e-128 364
Msa0974660 AT5G56320.2 68.526 251 70 2 1 242 1 251 1.54e-128 364
Msa0974660 AT5G56320.3 68.526 251 70 2 1 242 1 251 3.70e-128 365
Msa0974660 AT2G40610.1 68.800 250 68 3 2 242 5 253 4.21e-124 353
Msa0974660 AT5G02260.1 70.667 225 56 2 28 242 32 256 5.49e-116 332
Msa0974660 AT2G39700.1 66.667 243 70 3 11 242 13 255 5.60e-116 332
Msa0974660 AT1G69530.4 67.600 250 42 3 1 242 1 219 2.37e-115 329
Msa0974660 AT1G69530.5 71.304 230 55 3 1 222 1 227 7.58e-115 329
Msa0974660 AT5G05290.1 63.200 250 82 3 2 242 7 255 9.82e-115 329
Msa0974660 AT2G37640.1 70.222 225 57 2 28 242 36 260 1.24e-113 327
Msa0974660 AT3G55500.1 62.109 256 83 4 1 242 3 258 8.75e-112 322
Msa0974660 AT2G28950.1 64.453 256 76 4 1 242 1 255 1.39e-111 321
Msa0974660 AT4G01630.1 58.635 249 91 4 1 237 1 249 7.40e-105 304
Msa0974660 AT1G20190.1 64.159 226 70 3 24 238 22 247 7.32e-102 296
Msa0974660 AT2G37640.2 67.788 208 57 2 45 242 28 235 5.74e-101 293
Msa0974660 AT5G39280.1 54.911 224 95 1 23 240 49 272 8.94e-89 264
Msa0974660 AT5G39300.1 54.911 224 95 1 23 240 50 273 2.66e-88 263
Msa0974660 AT5G39270.1 56.164 219 90 1 28 240 58 276 6.50e-88 262
Msa0974660 AT5G39290.1 55.251 219 92 1 28 240 58 276 5.39e-87 259
Msa0974660 AT1G12560.1 52.893 242 104 3 6 237 14 255 3.23e-84 252
Msa0974660 AT3G15370.1 51.383 253 112 7 1 243 1 252 2.28e-83 249
Msa0974660 AT5G39310.1 55.204 221 92 2 27 240 89 309 2.62e-83 251
Msa0974660 AT5G39260.1 51.220 246 109 3 6 240 14 259 1.62e-81 245
Msa0974660 AT1G62980.1 55.357 224 88 4 28 240 31 253 3.92e-81 244
Msa0974660 AT1G20190.2 60.963 187 62 3 63 238 2 188 1.61e-79 238
Msa0974660 AT3G03220.1 50.000 224 103 2 28 242 40 263 4.85e-78 236
Msa0974660 AT3G15370.2 45.936 283 112 8 1 243 1 282 1.19e-76 233
Msa0974660 AT4G38210.1 47.431 253 120 4 2 242 3 254 4.62e-75 228
Msa0974660 AT4G28250.1 34.413 247 145 9 7 240 15 257 7.34e-31 115
Msa0974660 AT2G20750.1 33.186 226 137 7 28 240 40 264 1.33e-30 114
Msa0974660 AT4G28250.2 33.333 246 143 9 7 240 15 251 1.87e-27 106
Msa0974660 AT1G65680.1 32.000 225 134 8 28 237 47 267 4.98e-25 100
Msa0974660 AT2G20750.2 35.152 165 95 5 28 181 40 203 3.46e-23 94.0
Msa0974660 AT1G65681.1 32.536 209 124 9 42 237 12 216 4.95e-22 91.3
Msa0974660 AT2G45110.1 32.301 226 126 9 31 237 36 253 9.65e-22 91.3
Msa0974660 AT4G28250.4 34.211 190 106 7 7 186 15 195 1.26e-20 87.0
Msa0974660 AT4G28250.3 36.527 167 87 7 25 181 33 190 2.51e-20 86.3
Msa0974660 AT3G60570.1 28.049 246 158 7 6 237 11 251 5.14e-19 84.0
Msa0974660 AT4G17030.1 30.000 230 140 8 28 243 27 249 6.52e-19 83.2
Msa0974660 AT3G45970.2 27.830 212 127 9 46 239 14 217 1.57e-14 71.2
Msa0974660 AT3G60570.2 26.829 205 132 6 46 237 4 203 5.61e-14 69.3
Msa0974660 AT3G45970.1 27.053 207 125 9 51 239 46 244 7.37e-12 63.9
Msa0974660 AT4G38400.1 25.728 206 128 9 51 239 47 244 3.62e-11 62.0
Msa0974660 AT3G45960.2 26.471 204 125 9 51 237 46 241 8.49e-11 60.8

Find 98 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCATATATGTTGAAATT+TGG 0.159759 6_4:-7888815 Msa0974660:three_prime_UTR
CTATTTACTCAAATGATTAA+TGG 0.166386 6_4:-7888890 Msa0974660:three_prime_UTR
TCCATGGCTATGGTAGAAAT+TGG 0.198703 6_4:-7890730 Msa0974660:CDS
TATATGCAAGATGCATTTAA+AGG 0.216975 6_4:+7889157 None:intergenic
CTAAACTAAGTCATAGTTAA+AGG 0.241625 6_4:-7889122 Msa0974660:three_prime_UTR
GAGCCATGGAGACACCATTT+TGG 0.252914 6_4:+7890014 None:intergenic
TTGAGACTTGACATATATTA+AGG 0.283614 6_4:+7888714 None:intergenic
AATGCACATGCAACCTTCTA+TGG 0.293252 6_4:-7890698 Msa0974660:CDS
CATCTAGGCTTTCTTGTTCT+AGG 0.294548 6_4:-7890779 Msa0974660:CDS
GCTTAAACAATATTGTATAA+AGG 0.302966 6_4:+7888577 None:intergenic
TCTAGTCCTTGAACCTTTGA+TGG 0.309672 6_4:+7889362 None:intergenic
GTAGAAGAAGAGGTGGAATA+AGG 0.318290 6_4:-7889464 Msa0974660:CDS
GCCCCACCCAGTTGGTCCTT+TGG 0.320692 6_4:-7889219 Msa0974660:CDS
GGAATGGAGTTGGAATAAAT+AGG 0.331817 6_4:+7890954 None:intergenic
GGCAAGCCATGTCAAGGAAT+TGG 0.336529 6_4:-7889338 Msa0974660:CDS
CAAGGAATTGGGGACAAAAT+TGG 0.338609 6_4:-7889326 Msa0974660:CDS
GCAAGCCATGTCAAGGAATT+GGG 0.340806 6_4:-7889337 Msa0974660:CDS
TCAGGTGGTGCATGTGGATA+TGG 0.358218 6_4:-7890146 Msa0974660:intron
TTGTTCCTGTTGTTTATAGA+AGG 0.359748 6_4:-7889875 Msa0974660:intron
CCATGGCTATGGTAGAAATT+GGG 0.365156 6_4:-7890729 Msa0974660:CDS
AGCATCACTGCCACCATAGA+AGG 0.378869 6_4:+7890685 None:intergenic
GAGAGATCAAAATGGTGATT+AGG 0.389572 6_4:+7889939 None:intergenic
TATGGTGGCAGTGATGCTTC+TGG 0.392725 6_4:-7890680 Msa0974660:CDS
CAGAGCAACTCTTATTTGAA+TGG 0.396658 6_4:-7889303 Msa0974660:CDS
GTGACTAATGTTGGAGGTGC+TGG 0.409148 6_4:-7889402 Msa0974660:CDS
GGTTTGTCCAAAGGACCAAC+TGG 0.413288 6_4:+7889212 None:intergenic
AACTTGTATAGTCAAGGTTA+TGG 0.413609 6_4:-7890122 Msa0974660:CDS
TGAGCAATGTGTTGGAAAAC+AGG 0.417463 6_4:+7889912 None:intergenic
ATATGCAAGATGCATTTAAA+GGG 0.422567 6_4:+7889158 None:intergenic
TTAGTCCTTGTGACTAATGT+TGG 0.430036 6_4:-7889411 Msa0974660:CDS
GACACACCACTAACACTTGT+TGG 0.432749 6_4:+7889042 None:intergenic
TTTGTAGTCACCACGGGTAA+TGG 0.434090 6_4:-7889267 Msa0974660:CDS
AATTACCTTCTATAAACAAC+AGG 0.442368 6_4:+7889870 None:intergenic
TCAAAGGTTCAAGGACTAGA+TGG 0.459280 6_4:-7889359 Msa0974660:CDS
ACTTGTATAGTCAAGGTTAT+GGG 0.466026 6_4:-7890121 Msa0974660:CDS
ATCTCATATGTCCATGGCTA+TGG 0.469731 6_4:-7890740 Msa0974660:CDS
GGAATAAGGTTCACAATCAA+TGG 0.470548 6_4:-7889450 Msa0974660:CDS
CTTTATATTGAGCAATGTGT+TGG 0.478496 6_4:+7889904 None:intergenic
GCAAGATGCATTTAAAGGGT+TGG 0.482252 6_4:+7889162 None:intergenic
CTGTAGCCATCAAAGGTTCA+AGG 0.485843 6_4:-7889368 Msa0974660:CDS
TCCAAAGGACCAACTGGGTG+GGG 0.487484 6_4:+7889218 None:intergenic
GAATGGAGTTGGAATAAATA+GGG 0.488366 6_4:+7890955 None:intergenic
TCCTTGATCTCATATGTCCA+TGG 0.488957 6_4:-7890746 Msa0974660:CDS
TAGTATCCAACAAGTGTTAG+TGG 0.490441 6_4:-7889048 Msa0974660:three_prime_UTR
GTCCTTGTGACTAATGTTGG+AGG 0.495647 6_4:-7889408 Msa0974660:CDS
AATGTGCTAGTGACCCAAAA+TGG 0.497071 6_4:-7890028 Msa0974660:CDS
TTAATATATGTCAAGTCTCA+AGG 0.504197 6_4:-7888712 Msa0974660:three_prime_UTR
CACATTGCTCAATATAAAGC+TGG 0.505971 6_4:-7889900 Msa0974660:CDS
AGGGTAAGGTGTAGAAGAAG+AGG 0.509744 6_4:-7889474 Msa0974660:CDS
ACAAGTGTTAGTGGTGTGTC+TGG 0.510752 6_4:-7889039 Msa0974660:three_prime_UTR
AGTGATGCTTCTGGCACAAT+GGG 0.518333 6_4:-7890671 Msa0974660:intron
GCCACTAATTTCTGTCCACC+TGG 0.524649 6_4:-7889978 Msa0974660:CDS
GCCATGGACATATGAGATCA+AGG 0.531008 6_4:+7890745 None:intergenic
TTAATGTTGCCCCACCCAGT+TGG 0.531923 6_4:-7889227 Msa0974660:CDS
CTTTCATTTGTAGTCACCAC+GGG 0.534498 6_4:-7889273 Msa0974660:CDS
AGATCAAAATGGTGATTAGG+AGG 0.535090 6_4:+7889942 None:intergenic
TTCAACAATGGTTTGAGTTG+TGG 0.535378 6_4:-7890068 Msa0974660:CDS
CAGGTTGAGAGAGATCAAAA+TGG 0.536275 6_4:+7889931 None:intergenic
TTTAGCTGAGGATGATAAAG+GGG 0.537736 6_4:-7888678 Msa0974660:three_prime_UTR
TTTAAAGGGTTGGTTAGTAG+AGG 0.543847 6_4:+7889172 None:intergenic
ATTTCTGTCCACCTGGTGGT+TGG 0.547131 6_4:-7889971 Msa0974660:CDS
TCCTTTGGACAAACCTACAC+TGG 0.547722 6_4:-7889204 Msa0974660:CDS
GAGGAACTGCCTTCCAGTGT+AGG 0.551003 6_4:+7889191 None:intergenic
TTGTCCCCAATTCCTTGACA+TGG 0.556187 6_4:+7889332 None:intergenic
CCCAATTTCTACCATAGCCA+TGG 0.556965 6_4:+7890729 None:intergenic
GACCCAAAATGGTGTCTCCA+TGG 0.557622 6_4:-7890017 Msa0974660:CDS
GTCCAAAGGACCAACTGGGT+GGG 0.563335 6_4:+7889217 None:intergenic
GTAAGGTGTAGAAGAAGAGG+TGG 0.567385 6_4:-7889471 Msa0974660:CDS
GCTATGGTAGAAATTGGGGT+TGG 0.571222 6_4:-7890724 Msa0974660:CDS
CAGTGATGCTTCTGGCACAA+TGG 0.576572 6_4:-7890672 Msa0974660:CDS
TCCAGTGTAGGTTTGTCCAA+AGG 0.584012 6_4:+7889203 None:intergenic
TATGGAAACTTGTATAGTCA+AGG 0.585100 6_4:-7890128 Msa0974660:CDS
GTGCATTCTGTAGCCATCAA+AGG 0.587053 6_4:-7889375 Msa0974660:CDS
ACCAGGTGGACAGAAATTAG+TGG 0.590692 6_4:+7889977 None:intergenic
AGTACAGCATTATTCAACAA+TGG 0.601952 6_4:-7890080 Msa0974660:CDS
CAGTAACAACAATGGAGCCA+TGG 0.606178 6_4:+7890000 None:intergenic
GGAGGGTCACACCAACCACC+AGG 0.606947 6_4:+7889960 None:intergenic
CACCTCCAACATTAGTCACA+AGG 0.609149 6_4:+7889406 None:intergenic
TTGTATCTGATACGTGTCAG+TGG 0.609901 6_4:-7889095 Msa0974660:three_prime_UTR
AAAATTTCAGGTGGTGCATG+TGG 0.610538 6_4:-7890152 Msa0974660:intron
CTAGATGGCAAGCCATGTCA+AGG 0.612177 6_4:-7889344 Msa0974660:CDS
TGTCCAAAGGACCAACTGGG+TGG 0.615300 6_4:+7889216 None:intergenic
TAATATATGTCAAGTCTCAA+GGG 0.617040 6_4:-7888711 Msa0974660:three_prime_UTR
ACTAATTTCTGTCCACCTGG+TGG 0.617803 6_4:-7889975 Msa0974660:CDS
CAAGCCATGTCAAGGAATTG+GGG 0.622367 6_4:-7889336 Msa0974660:CDS
CATGGCTATGGTAGAAATTG+GGG 0.623894 6_4:-7890728 Msa0974660:CDS
TTGGACAAACCTACACTGGA+AGG 0.627049 6_4:-7889200 Msa0974660:CDS
TCTTTCATTTGTAGTCACCA+CGG 0.631684 6_4:-7889274 Msa0974660:CDS
ATTAGTGGCAGTAACAACAA+TGG 0.635904 6_4:+7889992 None:intergenic
GCACATGCAACCTTCTATGG+TGG 0.645972 6_4:-7890695 Msa0974660:CDS
TGGAGTTGGAATAAATAGGG+AGG 0.646851 6_4:+7890958 None:intergenic
TATATATGTCGATGTTGCGG+TGG 0.659986 6_4:+7888930 None:intergenic
AACTATATATGTCGATGTTG+CGG 0.662161 6_4:+7888927 None:intergenic
GATCAAAATGGTGATTAGGA+GGG 0.666299 6_4:+7889943 None:intergenic
GTTTGTCCAAAGGACCAACT+GGG 0.667033 6_4:+7889213 None:intergenic
GGGTCACACCAACCACCAGG+TGG 0.687412 6_4:+7889963 None:intergenic
TGTGTGTAGTATTCGACATG+TGG 0.718690 6_4:-7888993 Msa0974660:three_prime_UTR
AATACTATGACCATTACCCG+TGG 0.719067 6_4:+7889257 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATCAAATTTTAAAACTA+TGG + chr6_4:7888850-7888869 None:intergenic 10.0%
!! AACAAAAATGTAAAAATTTC+AGG - chr6_4:7889295-7889314 Msa0974660:CDS 15.0%
!!! TTAAGGAAGTAATTATTTTT+GGG + chr6_4:7890731-7890750 None:intergenic 15.0%
!!! ATTAAGGAAGTAATTATTTT+TGG + chr6_4:7890732-7890751 None:intergenic 15.0%
!!! AGATTTTGCATATTTTTTGA+GGG + chr6_4:7888529-7888548 None:intergenic 20.0%
!!! TTATTTTGGTAATTCGATTA+GGG + chr6_4:7889163-7889182 None:intergenic 20.0%
!!! ATTATTTTGGTAATTCGATT+AGG + chr6_4:7889164-7889183 None:intergenic 20.0%
!! AAAAATGTAAAAATTTCAGG+TGG - chr6_4:7889298-7889317 Msa0974660:CDS 20.0%
!!! TGATTTTCTCAAAATATTAG+CGG + chr6_4:7889776-7889795 None:intergenic 20.0%
!!! TTAATCTTTTACTACTTGTT+TGG - chr6_4:7889918-7889937 Msa0974660:CDS 20.0%
!! CTATTTACTCAAATGATTAA+TGG - chr6_4:7890569-7890588 Msa0974660:intron 20.0%
!!! TAAGGAAGTAATTATTTTTG+GGG + chr6_4:7890730-7890749 None:intergenic 20.0%
!! GCTTAAACAATATTGTATAA+AGG + chr6_4:7890885-7890904 None:intergenic 20.0%
!!! GAGATTTTGCATATTTTTTG+AGG + chr6_4:7888530-7888549 None:intergenic 25.0%
! ATGTGAACATAAAGAAAGAA+AGG + chr6_4:7888600-7888619 None:intergenic 25.0%
!! TGTTGCAAACTTTTACATTA+TGG - chr6_4:7888876-7888895 Msa0974660:three_prime_UTR 25.0%
!! GTACAATATAAAGGATTTTG+AGG + chr6_4:7888943-7888962 None:intergenic 25.0%
! CAATTACGAGTACAATATAA+AGG + chr6_4:7888952-7888971 None:intergenic 25.0%
! AAAATTCTTAGCTATACTCA+TGG + chr6_4:7888998-7889017 None:intergenic 25.0%
!! AGTATAGCTAAGAATTTTGT+TGG - chr6_4:7889000-7889019 Msa0974660:three_prime_UTR 25.0%
!! TTACAATGACTCGATTATTT+TGG + chr6_4:7889177-7889196 None:intergenic 25.0%
! AAATAATCGAGTCATTGTAA+AGG - chr6_4:7889177-7889196 Msa0974660:exon 25.0%
! AATAATCGAGTCATTGTAAA+GGG - chr6_4:7889178-7889197 Msa0974660:exon 25.0%
! AATTACCTTCTATAAACAAC+AGG + chr6_4:7889592-7889611 None:intergenic 25.0%
! ATCCTTAACAATATGTGAAA+TGG - chr6_4:7889636-7889655 Msa0974660:intron 25.0%
! ATCCATTTCACATATTGTTA+AGG + chr6_4:7889641-7889660 None:intergenic 25.0%
! ATATGCAAGATGCATTTAAA+GGG + chr6_4:7890304-7890323 None:intergenic 25.0%
! TATATGCAAGATGCATTTAA+AGG + chr6_4:7890305-7890324 None:intergenic 25.0%
! CTAAACTAAGTCATAGTTAA+AGG - chr6_4:7890337-7890356 Msa0974660:intron 25.0%
! GCTTCATATATGTTGAAATT+TGG - chr6_4:7890644-7890663 Msa0974660:intron 25.0%
! TTGAGACTTGACATATATTA+AGG + chr6_4:7890748-7890767 None:intergenic 25.0%
! TTAATATATGTCAAGTCTCA+AGG - chr6_4:7890747-7890766 Msa0974660:CDS 25.0%
! TAATATATGTCAAGTCTCAA+GGG - chr6_4:7890748-7890767 Msa0974660:CDS 25.0%
GAATGGAGTTGGAATAAATA+GGG + chr6_4:7888507-7888526 None:intergenic 30.0%
!!! TTGCATATTTTTTGAGGGAA+TGG + chr6_4:7888524-7888543 None:intergenic 30.0%
AGAAAGAAAGGAAGACATAA+AGG + chr6_4:7888588-7888607 None:intergenic 30.0%
TGGTCTGGTTATTAAAACAA+TGG + chr6_4:7889073-7889092 None:intergenic 30.0%
! GCAAACACATTTGTTAGTTA+TGG + chr6_4:7889263-7889282 None:intergenic 30.0%
! CTAACAAATGTGTTTGCTAA+TGG - chr6_4:7889266-7889285 Msa0974660:CDS 30.0%
TATGGAAACTTGTATAGTCA+AGG - chr6_4:7889331-7889350 Msa0974660:CDS 30.0%
AACTTGTATAGTCAAGGTTA+TGG - chr6_4:7889337-7889356 Msa0974660:CDS 30.0%
ACTTGTATAGTCAAGGTTAT+GGG - chr6_4:7889338-7889357 Msa0974660:CDS 30.0%
AGTACAGCATTATTCAACAA+TGG - chr6_4:7889379-7889398 Msa0974660:CDS 30.0%
CTTTATATTGAGCAATGTGT+TGG + chr6_4:7889558-7889577 None:intergenic 30.0%
! TTGTTCCTGTTGTTTATAGA+AGG - chr6_4:7889584-7889603 Msa0974660:intron 30.0%
TCACATATTGTTAAGGATGA+AGG + chr6_4:7889634-7889653 None:intergenic 30.0%
CTATGTAACTATATGAAGCA+CGG - chr6_4:7889716-7889735 Msa0974660:intron 30.0%
GTAATTATATGTGTCAGTGT+CGG - chr6_4:7889807-7889826 Msa0974660:intron 30.0%
ACTTACATATCTATGAAGCA+AGG + chr6_4:7889879-7889898 None:intergenic 30.0%
AGAAAACAAAGTTAGCATCA+TGG + chr6_4:7889944-7889963 None:intergenic 30.0%
!!! AACTTTGTTTTCTTCATGCA+TGG - chr6_4:7889951-7889970 Msa0974660:CDS 30.0%
!! ATGCATGGTTTTTGATTGAA+GGG - chr6_4:7889966-7889985 Msa0974660:CDS 30.0%
AACTATATATGTCGATGTTG+CGG + chr6_4:7890535-7890554 None:intergenic 30.0%
!!! TTTTTAGCTGAGGATGATAA+AGG - chr6_4:7890779-7890798 Msa0974660:CDS 30.0%
!! TTTTAGCTGAGGATGATAAA+GGG - chr6_4:7890780-7890799 Msa0974660:CDS 30.0%
GGAATGGAGTTGGAATAAAT+AGG + chr6_4:7888508-7888527 None:intergenic 35.0%
!!! ATTTTTTGAGGGAATGGAGT+TGG + chr6_4:7888518-7888537 None:intergenic 35.0%
CTTTCTTGTTGCATTTATGC+AGG - chr6_4:7888647-7888666 Msa0974660:three_prime_UTR 35.0%
TATGCTCTAGCTATACTTTG+TGG - chr6_4:7889039-7889058 Msa0974660:three_prime_UTR 35.0%
CCATGAATAAGAAGTCTAAC+CGG + chr6_4:7889105-7889124 None:intergenic 35.0%
TCATTGTAAAGGGTAGTTCA+AGG - chr6_4:7889188-7889207 Msa0974660:CDS 35.0%
!! TTCAACAATGGTTTGAGTTG+TGG - chr6_4:7889391-7889410 Msa0974660:CDS 35.0%
ATTAGTGGCAGTAACAACAA+TGG + chr6_4:7889470-7889489 None:intergenic 35.0%
GATCAAAATGGTGATTAGGA+GGG + chr6_4:7889519-7889538 None:intergenic 35.0%
AGATCAAAATGGTGATTAGG+AGG + chr6_4:7889520-7889539 None:intergenic 35.0%
GAGAGATCAAAATGGTGATT+AGG + chr6_4:7889523-7889542 None:intergenic 35.0%
CACATTGCTCAATATAAAGC+TGG - chr6_4:7889559-7889578 Msa0974660:intron 35.0%
AACTATATGAAGCACGGATA+CGG - chr6_4:7889722-7889741 Msa0974660:intron 35.0%
TCTCAAAATATTAGCGGTGT+TGG + chr6_4:7889770-7889789 None:intergenic 35.0%
!! CATGCATGGTTTTTGATTGA+AGG - chr6_4:7889965-7889984 Msa0974660:CDS 35.0%
!! TGGTTTTTGATTGAAGGGTA+AGG - chr6_4:7889971-7889990 Msa0974660:CDS 35.0%
GGAATAAGGTTCACAATCAA+TGG - chr6_4:7890009-7890028 Msa0974660:CDS 35.0%
TTAGTCCTTGTGACTAATGT+TGG - chr6_4:7890048-7890067 Msa0974660:CDS 35.0%
! CAGAGCAACTCTTATTTGAA+TGG - chr6_4:7890156-7890175 Msa0974660:intron 35.0%
TCTTTCATTTGTAGTCACCA+CGG - chr6_4:7890185-7890204 Msa0974660:intron 35.0%
!! TTTAAAGGGTTGGTTAGTAG+AGG + chr6_4:7890290-7890309 None:intergenic 35.0%
TAGTATCCAACAAGTGTTAG+TGG - chr6_4:7890411-7890430 Msa0974660:intron 35.0%
!!! GGTACTTTAGTTTTTAGCTG+AGG - chr6_4:7890769-7890788 Msa0974660:CDS 35.0%
TTTAGCTGAGGATGATAAAG+GGG - chr6_4:7890781-7890800 Msa0974660:CDS 35.0%
TGGAGTTGGAATAAATAGGG+AGG + chr6_4:7888504-7888523 None:intergenic 40.0%
GCAGGAAAAATGTCTCATCT+AGG - chr6_4:7888665-7888684 Msa0974660:three_prime_UTR 40.0%
CATCTAGGCTTTCTTGTTCT+AGG - chr6_4:7888680-7888699 Msa0974660:three_prime_UTR 40.0%
TCCTTGATCTCATATGTCCA+TGG - chr6_4:7888713-7888732 Msa0974660:three_prime_UTR 40.0%
ATCTCATATGTCCATGGCTA+TGG - chr6_4:7888719-7888738 Msa0974660:three_prime_UTR 40.0%
TCCATGGCTATGGTAGAAAT+TGG - chr6_4:7888729-7888748 Msa0974660:three_prime_UTR 40.0%
CCATGGCTATGGTAGAAATT+GGG - chr6_4:7888730-7888749 Msa0974660:three_prime_UTR 40.0%
CATGGCTATGGTAGAAATTG+GGG - chr6_4:7888731-7888750 Msa0974660:three_prime_UTR 40.0%
AATGCACATGCAACCTTCTA+TGG - chr6_4:7888761-7888780 Msa0974660:three_prime_UTR 40.0%
CCGGTTAGACTTCTTATTCA+TGG - chr6_4:7889102-7889121 Msa0974660:three_prime_UTR 40.0%
GTTGCAGTTCGAGCAATTTA+AGG + chr6_4:7889136-7889155 None:intergenic 40.0%
TTCAACTTGGTTGAACTGTC+TGG - chr6_4:7889211-7889230 Msa0974660:CDS 40.0%
! AAAATTTCAGGTGGTGCATG+TGG - chr6_4:7889307-7889326 Msa0974660:CDS 40.0%
AATGTGCTAGTGACCCAAAA+TGG - chr6_4:7889431-7889450 Msa0974660:CDS 40.0%
! CAGGTTGAGAGAGATCAAAA+TGG + chr6_4:7889531-7889550 None:intergenic 40.0%
TGAGCAATGTGTTGGAAAAC+AGG + chr6_4:7889550-7889569 None:intergenic 40.0%
GTAGAAGAAGAGGTGGAATA+AGG - chr6_4:7889995-7890014 Msa0974660:CDS 40.0%
TCTAGTCCTTGAACCTTTGA+TGG + chr6_4:7890100-7890119 None:intergenic 40.0%
TCAAAGGTTCAAGGACTAGA+TGG - chr6_4:7890100-7890119 Msa0974660:CDS 40.0%
CAAGGAATTGGGGACAAAAT+TGG - chr6_4:7890133-7890152 Msa0974660:CDS 40.0%
CTTTCATTTGTAGTCACCAC+GGG - chr6_4:7890186-7890205 Msa0974660:intron 40.0%
AATACTATGACCATTACCCG+TGG + chr6_4:7890205-7890224 None:intergenic 40.0%
GCAAGATGCATTTAAAGGGT+TGG + chr6_4:7890300-7890319 None:intergenic 40.0%
TTGTATCTGATACGTGTCAG+TGG - chr6_4:7890364-7890383 Msa0974660:intron 40.0%
TGTGTGTAGTATTCGACATG+TGG - chr6_4:7890466-7890485 Msa0974660:intron 40.0%
TATATATGTCGATGTTGCGG+TGG + chr6_4:7890532-7890551 None:intergenic 40.0%
GCCATGGACATATGAGATCA+AGG + chr6_4:7888717-7888736 None:intergenic 45.0%
CCCAATTTCTACCATAGCCA+TGG + chr6_4:7888733-7888752 None:intergenic 45.0%
GCTATGGTAGAAATTGGGGT+TGG - chr6_4:7888735-7888754 Msa0974660:three_prime_UTR 45.0%
AGTGATGCTTCTGGCACAAT+GGG - chr6_4:7888788-7888807 Msa0974660:three_prime_UTR 45.0%
ATTGCGTTTGCATGTCGTTG+TGG - chr6_4:7888914-7888933 Msa0974660:three_prime_UTR 45.0%
GGGTAGTTCAAGGTTCAACT+TGG - chr6_4:7889198-7889217 Msa0974660:CDS 45.0%
! TTGAACTGTCTGGTTCGCTT+CGG - chr6_4:7889221-7889240 Msa0974660:CDS 45.0%
! AGCCATGGAGACACCATTTT+GGG + chr6_4:7889447-7889466 None:intergenic 45.0%
CAGTAACAACAATGGAGCCA+TGG + chr6_4:7889462-7889481 None:intergenic 45.0%
ACCAGGTGGACAGAAATTAG+TGG + chr6_4:7889485-7889504 None:intergenic 45.0%
ACTAATTTCTGTCCACCTGG+TGG - chr6_4:7889484-7889503 Msa0974660:intron 45.0%
TATGAAGCAAGGACACTCCT+CGG + chr6_4:7889868-7889887 None:intergenic 45.0%
AGGGTAAGGTGTAGAAGAAG+AGG - chr6_4:7889985-7890004 Msa0974660:CDS 45.0%
GTAAGGTGTAGAAGAAGAGG+TGG - chr6_4:7889988-7890007 Msa0974660:CDS 45.0%
GTCCTTGTGACTAATGTTGG+AGG - chr6_4:7890051-7890070 Msa0974660:CDS 45.0%
CACCTCCAACATTAGTCACA+AGG + chr6_4:7890056-7890075 None:intergenic 45.0%
GTGCATTCTGTAGCCATCAA+AGG - chr6_4:7890084-7890103 Msa0974660:CDS 45.0%
CTGTAGCCATCAAAGGTTCA+AGG - chr6_4:7890091-7890110 Msa0974660:CDS 45.0%
GCAAGCCATGTCAAGGAATT+GGG - chr6_4:7890122-7890141 Msa0974660:CDS 45.0%
CAAGCCATGTCAAGGAATTG+GGG - chr6_4:7890123-7890142 Msa0974660:CDS 45.0%
TTGTCCCCAATTCCTTGACA+TGG + chr6_4:7890130-7890149 None:intergenic 45.0%
TTTGTAGTCACCACGGGTAA+TGG - chr6_4:7890192-7890211 Msa0974660:intron 45.0%
GTTTGTCCAAAGGACCAACT+GGG + chr6_4:7890249-7890268 None:intergenic 45.0%
TCCTTTGGACAAACCTACAC+TGG - chr6_4:7890255-7890274 Msa0974660:intron 45.0%
TCCAGTGTAGGTTTGTCCAA+AGG + chr6_4:7890259-7890278 None:intergenic 45.0%
TTGGACAAACCTACACTGGA+AGG - chr6_4:7890259-7890278 Msa0974660:intron 45.0%
GACACACCACTAACACTTGT+TGG + chr6_4:7890420-7890439 None:intergenic 45.0%
ACAAGTGTTAGTGGTGTGTC+TGG - chr6_4:7890420-7890439 Msa0974660:intron 45.0%
GCACATGCAACCTTCTATGG+TGG - chr6_4:7888764-7888783 Msa0974660:three_prime_UTR 50.0%
AGCATCACTGCCACCATAGA+AGG + chr6_4:7888777-7888796 None:intergenic 50.0%
TATGGTGGCAGTGATGCTTC+TGG - chr6_4:7888779-7888798 Msa0974660:three_prime_UTR 50.0%
CAGTGATGCTTCTGGCACAA+TGG - chr6_4:7888787-7888806 Msa0974660:three_prime_UTR 50.0%
AACCAGACCAGACATCGAAC+CGG - chr6_4:7889083-7889102 Msa0974660:three_prime_UTR 50.0%
!! AGTCTAACCGGTTCGATGTC+TGG + chr6_4:7889093-7889112 None:intergenic 50.0%
TCAGGTGGTGCATGTGGATA+TGG - chr6_4:7889313-7889332 Msa0974660:CDS 50.0%
GACCCAAAATGGTGTCTCCA+TGG - chr6_4:7889442-7889461 Msa0974660:CDS 50.0%
! GAGCCATGGAGACACCATTT+TGG + chr6_4:7889448-7889467 None:intergenic 50.0%
GCCACTAATTTCTGTCCACC+TGG - chr6_4:7889481-7889500 Msa0974660:intron 50.0%
ATTTCTGTCCACCTGGTGGT+TGG - chr6_4:7889488-7889507 Msa0974660:intron 50.0%
! GATTAGTTGTGTCCTGGTGC+CGG + chr6_4:7889846-7889865 None:intergenic 50.0%
ACCAGGACACAACTAATCCG+AGG - chr6_4:7889848-7889867 Msa0974660:intron 50.0%
!! TCCTCGGATTAGTTGTGTCC+TGG + chr6_4:7889852-7889871 None:intergenic 50.0%
! GTGACTAATGTTGGAGGTGC+TGG - chr6_4:7890057-7890076 Msa0974660:CDS 50.0%
CTAGATGGCAAGCCATGTCA+AGG - chr6_4:7890115-7890134 Msa0974660:CDS 50.0%
GGCAAGCCATGTCAAGGAAT+TGG - chr6_4:7890121-7890140 Msa0974660:CDS 50.0%
TTAATGTTGCCCCACCCAGT+TGG - chr6_4:7890232-7890251 Msa0974660:intron 50.0%
GGTTTGTCCAAAGGACCAAC+TGG + chr6_4:7890250-7890269 None:intergenic 50.0%
!! AACCGGTTCGATGTCTGGTC+TGG + chr6_4:7889088-7889107 None:intergenic 55.0%
GCACGGATACGGACACAACA+CGG - chr6_4:7889733-7889752 Msa0974660:intron 55.0%
TGTCGGACACGACATGTGTC+CGG - chr6_4:7889824-7889843 Msa0974660:intron 55.0%
TCCAAAGGACCAACTGGGTG+GGG + chr6_4:7890244-7890263 None:intergenic 55.0%
GTCCAAAGGACCAACTGGGT+GGG + chr6_4:7890245-7890264 None:intergenic 55.0%
TGTCCAAAGGACCAACTGGG+TGG + chr6_4:7890246-7890265 None:intergenic 55.0%
GAGGAACTGCCTTCCAGTGT+AGG + chr6_4:7890271-7890290 None:intergenic 55.0%
GGGTCACACCAACCACCAGG+TGG + chr6_4:7889499-7889518 None:intergenic 65.0%
GGAGGGTCACACCAACCACC+AGG + chr6_4:7889502-7889521 None:intergenic 65.0%
CACGACATGTGTCCGGCACC+AGG - chr6_4:7889831-7889850 Msa0974660:intron 65.0%
GCCCCACCCAGTTGGTCCTT+TGG - chr6_4:7890240-7890259 Msa0974660:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 7888482 7890999 7888482 ID=Msa0974660;Name=Msa0974660
chr6_4 mRNA 7888482 7890999 7888482 ID=Msa0974660-mRNA-1;Parent=Msa0974660;Name=Msa0974660-mRNA-1;_AED=0.03;_eAED=0.03;_QI=93|1|1|1|0.66|0.75|4|703|244
chr6_4 exon 7888482 7889494 7888482 ID=Msa0974660-mRNA-1:exon:2989;Parent=Msa0974660-mRNA-1
chr6_4 exon 7889876 7890164 7889876 ID=Msa0974660-mRNA-1:exon:2988;Parent=Msa0974660-mRNA-1
chr6_4 exon 7890672 7890812 7890672 ID=Msa0974660-mRNA-1:exon:2987;Parent=Msa0974660-mRNA-1
chr6_4 exon 7890912 7890999 7890912 ID=Msa0974660-mRNA-1:exon:2986;Parent=Msa0974660-mRNA-1
chr6_4 five_prime_UTR 7890912 7890999 7890912 ID=Msa0974660-mRNA-1:five_prime_utr;Parent=Msa0974660-mRNA-1
chr6_4 five_prime_UTR 7890808 7890812 7890808 ID=Msa0974660-mRNA-1:five_prime_utr;Parent=Msa0974660-mRNA-1
chr6_4 CDS 7890672 7890807 7890672 ID=Msa0974660-mRNA-1:cds;Parent=Msa0974660-mRNA-1
chr6_4 CDS 7889876 7890164 7889876 ID=Msa0974660-mRNA-1:cds;Parent=Msa0974660-mRNA-1
chr6_4 CDS 7889185 7889494 7889185 ID=Msa0974660-mRNA-1:cds;Parent=Msa0974660-mRNA-1
chr6_4 three_prime_UTR 7888482 7889184 7888482 ID=Msa0974660-mRNA-1:three_prime_utr;Parent=Msa0974660-mRNA-1
Gene Sequence

>Msa0974660

ATGTCTCATCTAGGCTTTCTTGTTCTAGGAATTATTTTCTCCTTGATCTCATATGTCCATGGCTATGGTAGAAATTGGGGTTGGATTAATGCACATGCAACCTTCTATGGTGGCAGTGATGCTTCTGGCACAATGGGTGGTGCATGTGGATATGGAAACTTGTATAGTCAAGGTTATGGGACTAATACAGCAGCACTTAGTACAGCATTATTCAACAATGGTTTGAGTTGTGGTGCATGCTATGAAATTAAATGTGCTAGTGACCCAAAATGGTGTCTCCATGGCTCCATTGTTGTTACTGCCACTAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCTAATCACCATTTTGATCTCTCTCAACCTGTTTTCCAACACATTGCTCAATATAAAGCTGGTATTGTTCCTGTTGTTTATAGAAGGGTAAGGTGTAGAAGAAGAGGTGGAATAAGGTTCACAATCAATGGTCATTCTTACTTCAATTTAGTCCTTGTGACTAATGTTGGAGGTGCTGGTGATGTGCATTCTGTAGCCATCAAAGGTTCAAGGACTAGATGGCAAGCCATGTCAAGGAATTGGGGACAAAATTGGCAGAGCAACTCTTATTTGAATGGACAAAGTCTTTCATTTGTAGTCACCACGGGTAATGGTCATAGTATTGTGTCATTTAATGTTGCCCCACCCAGTTGGTCCTTTGGACAAACCTACACTGGAAGGCAGTTCCTCTACTAA
Protein sequence

>Msa0974660

MSHLGFLVLGIIFSLISYVHGYGRNWGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIKCASDPKWCLHGSIVVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYKAGIVPVVYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQFLY*