AlfalfaGEDB | Msa0974660

M. sativa cultivar zhongmu-4 / Msa0974660

KEGG: K20628
GO: GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944
PFAM: PF03330.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0974660	XP_003618513.1	100.000	244	0	0	1	244	1	244	1.43e-178	500

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0974660	sp\|O80622\|EXP15_ARATH	76.190	252	48	3	1	242	3	252	2.29e-137	389

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0974660	G7KKW0	100.000	244	0	0	1	244	1	244	6.82e-179	500

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0974660	0.883257	5.228790e-71	-8.615850e-47
Msa0001040	Msa0974660	0.807145	5.831791e-50	-8.615850e-47
Msa0001510	Msa0974660	0.846568	2.001464e-59	-8.615850e-47
Msa0001540	Msa0974660	0.810609	1.058413e-50	-8.615850e-47
Msa0002690	Msa0974660	0.840466	8.547767e-58	-8.615850e-47
Msa0002700	Msa0974660	0.841054	5.996787e-58	-8.615850e-47
Msa0003370	Msa0974660	0.809866	1.530861e-50	-8.615850e-47
Msa0004180	Msa0974660	0.807547	4.792877e-50	-8.615850e-47
Msa0004340	Msa0974660	0.835672	1.464609e-56	-8.615850e-47
Msa0005690	Msa0974660	0.819639	1.045236e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0974660	MtrunA17_Chr6g0453341	100.000	244	0	0	1	244	11	254	0.0	500
Msa0974660	MtrunA17_Chr7g0217661	86.475	244	31	1	1	244	1	242	3.83e-156	433
Msa0974660	MtrunA17_Chr5g0417701	75.200	250	51	3	1	242	1	247	3.34e-135	380
Msa0974660	MtrunA17_Chr4g0042521	75.299	251	51	3	1	243	1	248	2.34e-133	375
Msa0974660	MtrunA17_Chr3g0128801	79.464	224	38	1	27	242	30	253	7.38e-131	369
Msa0974660	MtrunA17_Chr3g0092071	76.856	229	45	1	22	242	19	247	5.77e-130	367
Msa0974660	MtrunA17_Chr3g0128791	79.018	224	39	1	27	242	30	253	1.32e-129	366
Msa0974660	MtrunA17_Chr5g0432611	69.512	246	64	3	8	242	6	251	3.85e-126	357
Msa0974660	MtrunA17_Chr3g0107311	71.020	245	60	2	6	242	13	254	1.07e-124	354
Msa0974660	MtrunA17_Chr3g0107291	70.204	245	62	2	6	242	19	260	2.45e-123	350

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0974660	AT2G03090.1	76.190	252	48	3	1	242	3	252	2.33e-138	389
Msa0974660	AT3G29030.1	83.028	218	36	1	28	244	38	255	9.81e-137	385
Msa0974660	AT1G69530.2	76.000	250	51	2	1	242	1	249	5.78e-136	382
Msa0974660	AT1G69530.1	76.000	250	51	2	1	242	1	249	5.78e-136	382
Msa0974660	AT1G26770.1	76.800	250	48	2	1	242	1	248	3.51e-135	380
Msa0974660	AT1G26770.2	76.800	250	48	2	1	242	11	258	4.06e-135	381
Msa0974660	AT1G69530.3	76.423	246	49	2	1	238	1	245	1.14e-134	380
Msa0974660	AT5G56320.1	68.526	251	70	2	1	242	1	251	1.54e-128	364
Msa0974660	AT5G56320.2	68.526	251	70	2	1	242	1	251	1.54e-128	364
Msa0974660	AT5G56320.3	68.526	251	70	2	1	242	1	251	3.70e-128	365

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Find 98 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTCAGGTGGTGCATG+TGG	0.610538	6_4:-7890152	Msa0974660:intron
AACTATATATGTCGATGTTG+CGG	0.662161	6_4:+7888927	None:intergenic
AACTTGTATAGTCAAGGTTA+TGG	0.413609	6_4:-7890122	Msa0974660:CDS
AATACTATGACCATTACCCG+TGG	0.719067	6_4:+7889257	None:intergenic
AATGCACATGCAACCTTCTA+TGG	0.293252	6_4:-7890698	Msa0974660:CDS
AATGTGCTAGTGACCCAAAA+TGG	0.497071	6_4:-7890028	Msa0974660:CDS
AATTACCTTCTATAAACAAC+AGG	0.442368	6_4:+7889870	None:intergenic
ACAAGTGTTAGTGGTGTGTC+TGG	0.510752	6_4:-7889039	Msa0974660:three_prime_UTR
ACCAGGTGGACAGAAATTAG+TGG	0.590692	6_4:+7889977	None:intergenic
ACTAATTTCTGTCCACCTGG+TGG	0.617803	6_4:-7889975	Msa0974660:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATGGAGTTGGAATAAATA+GGG	+	chr6_4:7888507-7888526	None:intergenic	30.0%
AGAAAGAAAGGAAGACATAA+AGG	+	chr6_4:7888588-7888607	None:intergenic	30.0%
TGGTCTGGTTATTAAAACAA+TGG	+	chr6_4:7889073-7889092	None:intergenic	30.0%
TATGGAAACTTGTATAGTCA+AGG	-	chr6_4:7889331-7889350	Msa0974660:CDS	30.0%
AACTTGTATAGTCAAGGTTA+TGG	-	chr6_4:7889337-7889356	Msa0974660:CDS	30.0%
ACTTGTATAGTCAAGGTTAT+GGG	-	chr6_4:7889338-7889357	Msa0974660:CDS	30.0%
AGTACAGCATTATTCAACAA+TGG	-	chr6_4:7889379-7889398	Msa0974660:CDS	30.0%
CTTTATATTGAGCAATGTGT+TGG	+	chr6_4:7889558-7889577	None:intergenic	30.0%
TCACATATTGTTAAGGATGA+AGG	+	chr6_4:7889634-7889653	None:intergenic	30.0%
CTATGTAACTATATGAAGCA+CGG	-	chr6_4:7889716-7889735	Msa0974660:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	7888482	7890999	7888482	ID=Msa0974660;Name=Msa0974660
chr6_4	mRNA	7888482	7890999	7888482	ID=Msa0974660-mRNA-1;Parent=Msa0974660;Name=Msa0974660-mRNA-1;_AED=0.03;_eAED=0.03;_QI=93\|1\|1\|1\|0.66\|0.75\|4\|703\|244
chr6_4	exon	7888482	7889494	7888482	ID=Msa0974660-mRNA-1:exon:2989;Parent=Msa0974660-mRNA-1
chr6_4	exon	7889876	7890164	7889876	ID=Msa0974660-mRNA-1:exon:2988;Parent=Msa0974660-mRNA-1
chr6_4	exon	7890672	7890812	7890672	ID=Msa0974660-mRNA-1:exon:2987;Parent=Msa0974660-mRNA-1
chr6_4	exon	7890912	7890999	7890912	ID=Msa0974660-mRNA-1:exon:2986;Parent=Msa0974660-mRNA-1
chr6_4	five_prime_UTR	7890912	7890999	7890912	ID=Msa0974660-mRNA-1:five_prime_utr;Parent=Msa0974660-mRNA-1
chr6_4	five_prime_UTR	7890808	7890812	7890808	ID=Msa0974660-mRNA-1:five_prime_utr;Parent=Msa0974660-mRNA-1
chr6_4	CDS	7890672	7890807	7890672	ID=Msa0974660-mRNA-1:cds;Parent=Msa0974660-mRNA-1
chr6_4	CDS	7889876	7890164	7889876	ID=Msa0974660-mRNA-1:cds;Parent=Msa0974660-mRNA-1
chr6_4	CDS	7889185	7889494	7889185	ID=Msa0974660-mRNA-1:cds;Parent=Msa0974660-mRNA-1
chr6_4	three_prime_UTR	7888482	7889184	7888482	ID=Msa0974660-mRNA-1:three_prime_utr;Parent=Msa0974660-mRNA-1

Gene Sequence

>Msa0974660

ATGTCTCATCTAGGCTTTCTTGTTCTAGGAATTATTTTCTCCTTGATCTCATATGTCCATGGCTATGGTAGAAATTGGGGTTGGATTAATGCACATGCAACCTTCTATGGTGGCAGTGATGCTTCTGGCACAATGGGTGGTGCATGTGGATATGGAAACTTGTATAGTCAAGGTTATGGGACTAATACAGCAGCACTTAGTACAGCATTATTCAACAATGGTTTGAGTTGTGGTGCATGCTATGAAATTAAATGTGCTAGTGACCCAAAATGGTGTCTCCATGGCTCCATTGTTGTTACTGCCACTAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCTAATCACCATTTTGATCTCTCTCAACCTGTTTTCCAACACATTGCTCAATATAAAGCTGGTATTGTTCCTGTTGTTTATAGAAGGGTAAGGTGTAGAAGAAGAGGTGGAATAAGGTTCACAATCAATGGTCATTCTTACTTCAATTTAGTCCTTGTGACTAATGTTGGAGGTGCTGGTGATGTGCATTCTGTAGCCATCAAAGGTTCAAGGACTAGATGGCAAGCCATGTCAAGGAATTGGGGACAAAATTGGCAGAGCAACTCTTATTTGAATGGACAAAGTCTTTCATTTGTAGTCACCACGGGTAATGGTCATAGTATTGTGTCATTTAATGTTGCCCCACCCAGTTGGTCCTTTGGACAAACCTACACTGGAAGGCAGTTCCTCTACTAA

Protein sequence

>Msa0974660

MSHLGFLVLGIIFSLISYVHGYGRNWGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIKCASDPKWCLHGSIVVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYKAGIVPVVYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQFLY*