AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0304040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0304040 MtrunA17_Chr2g0331311 96.542 347 12 0 1 347 1 347 0.0 700
Msa0304040 MtrunA17_Chr7g0253651 66.867 332 109 1 16 346 17 348 1.35e-169 476
Msa0304040 MtrunA17_Chr2g0310111 62.500 328 121 2 17 344 21 346 1.96e-156 442
Msa0304040 MtrunA17_Chr8g0356981 65.549 328 110 3 16 343 14 338 4.05e-154 436
Msa0304040 MtrunA17_Chr2g0304231 58.095 315 131 1 27 341 30 343 1.06e-133 385
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0304040 AT3G12740.1 64.024 328 116 2 17 344 23 348 1.34e-156 443
Msa0304040 AT1G54320.1 62.805 328 120 2 17 344 22 347 4.89e-154 437
Msa0304040 AT1G79450.1 62.538 331 122 2 17 347 22 350 1.32e-152 433
Msa0304040 AT1G16360.2 62.006 329 123 2 16 344 21 347 5.83e-152 431
Msa0304040 AT1G16360.1 61.755 319 120 2 26 344 17 333 3.10e-146 416
Msa0304040 AT1G16360.4 60.855 304 117 2 26 329 17 318 6.13e-136 390
Msa0304040 AT1G79450.2 61.649 279 105 2 69 347 7 283 3.10e-124 358
Msa0304040 AT5G46150.1 52.632 342 157 3 1 341 1 338 2.09e-119 348
Msa0304040 AT5G46150.2 52.632 342 157 3 1 341 1 338 2.09e-119 348
Msa0304040 AT5G46150.3 52.727 330 154 2 1 329 1 329 2.91e-116 340
Msa0304040 AT1G16360.3 55.502 209 91 2 26 234 17 223 1.15e-79 243
Msa0304040 AT1G16360.5 55.502 209 91 2 26 234 17 223 1.15e-79 243
Msa0304040 AT5G46150.4 49.145 234 117 2 1 233 1 233 3.35e-74 229

Find 71 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATTTCATTGTTCAATAT+TGG 0.255001 2_3:-61327921 None:intergenic
AGGCATACATTTAGGTTTCT+TGG 0.257657 2_3:-61328171 None:intergenic
GGAATCATCTTTATCCCTAT+TGG 0.278510 2_3:+61328767 Msa0304040:CDS
CTATCCTTGTTCTGTGCTAT+AGG 0.299641 2_3:+61330351 Msa0304040:CDS
ATTGCCACATTTACTGCAAT+TGG 0.348370 2_3:+61328746 Msa0304040:CDS
TTTCAGAGTGGAGGTTTGAT+TGG 0.358409 2_3:+61329760 Msa0304040:CDS
ACCCATCCAGGTGTTAGAAT+TGG 0.365146 2_3:-61328494 None:intergenic
CTTGTAATATATTTGCATAA+AGG 0.374106 2_3:-61330847 None:intergenic
GTTGTCCATTGAAAATTTGT+AGG 0.382564 2_3:-61329653 None:intergenic
AACAATGATGCAAGACCAAT+AGG 0.394455 2_3:-61328782 None:intergenic
AACAAGAGGATCTGATTGTT+TGG 0.396536 2_3:+61330121 Msa0304040:CDS
TAACTGTAATGGAGTGGTTA+AGG 0.402936 2_3:-61328007 None:intergenic
GGGATTGCATACCTTGTTGT+TGG 0.410908 2_3:+61330324 Msa0304040:CDS
CAGAGTGGAGGTTTGATTGG+AGG 0.413776 2_3:+61329763 Msa0304040:CDS
CCAACTTTCAGAAAACTGTA+TGG 0.436379 2_3:+61330162 Msa0304040:CDS
ACAAGACTTGCACCCACAAA+TGG 0.438149 2_3:+61329000 Msa0304040:CDS
CAACTACAACTTGGATTGGT+GGG 0.445444 2_3:+61330286 Msa0304040:CDS
ATGAGGCCACAAGGAACAAT+TGG 0.445844 2_3:-61329607 None:intergenic
TTCCTTGTGGCCTCATTGCA+TGG 0.449722 2_3:+61329614 Msa0304040:CDS
TACAACACATACGAGTTTCA+AGG 0.464659 2_3:+61330243 Msa0304040:CDS
GTTAGAATTGGTTTCCATGC+AGG 0.464924 2_3:-61328482 None:intergenic
GGGATCCATCCTACTTATCA+TGG 0.480170 2_3:+61330692 Msa0304040:CDS
ATTGCATACCTTGTTGTTGG+TGG 0.482393 2_3:+61330327 Msa0304040:CDS
GTGGGTGCAAGTCTTGTTAG+TGG 0.484884 2_3:-61328994 None:intergenic
CTATCAACTACAACTTGGAT+TGG 0.485356 2_3:+61330282 Msa0304040:CDS
TTATCATGGAACAGAAATCC+AGG 0.490301 2_3:+61330706 Msa0304040:CDS
TGATGAAGTCATATCCATCA+TGG 0.492388 2_3:-61328111 None:intergenic
GTAGAAATGATAAGCAGTTG+TGG 0.499291 2_3:+61329521 Msa0304040:CDS
TTTGATAGTAATTATCAAGC+TGG 0.503169 2_3:-61329151 None:intergenic
ATTAAGTTACATTAACATGA+TGG 0.504743 2_3:-61328034 None:intergenic
CTGTTCCATGATAAGTAGGA+TGG 0.511626 2_3:-61330697 None:intergenic
ATTTCTGTTCCATGATAAGT+AGG 0.512059 2_3:-61330701 None:intergenic
GTTGCGGTGGGGAAATGAAA+TGG 0.512806 2_3:+61327897 None:intergenic
GTTTCAAGGTAGGAAGAAGT+TGG 0.512965 2_3:+61330257 Msa0304040:CDS
ACAATGATGCAAGACCAATA+GGG 0.513968 2_3:-61328781 None:intergenic
ACCAATTCTAACACCTGGAT+GGG 0.523126 2_3:+61328493 Msa0304040:CDS
ATGATGGAGAATAACTGTAA+TGG 0.524774 2_3:-61328018 None:intergenic
GTGAAAGATCGCAACCATGA+TGG 0.527489 2_3:+61328097 Msa0304040:exon
TGGTTCTATCAACTACAACT+TGG 0.538526 2_3:+61330277 Msa0304040:CDS
ATGTACTAACAATCCATTTG+TGG 0.539027 2_3:-61329013 None:intergenic
CAACTTTCAGAAAACTGTAT+GGG 0.539444 2_3:+61330163 Msa0304040:CDS
TGTTAATACGAAATGATGAA+AGG 0.542675 2_3:-61328060 None:intergenic
GATATGACTTCATCAAAAGA+TGG 0.544518 2_3:+61328119 Msa0304040:CDS
AACCAATTCTAACACCTGGA+TGG 0.544797 2_3:+61328492 Msa0304040:CDS
GTTGCATATTATACCCATCC+AGG 0.548338 2_3:-61328506 None:intergenic
TCAACTACAACTTGGATTGG+TGG 0.549590 2_3:+61330285 Msa0304040:CDS
AACTGCATCTTTAGCATCAG+AGG 0.555713 2_3:-61328952 None:intergenic
AGTAGACAAAACAGAAGGAA+AGG 0.558583 2_3:+61329582 Msa0304040:CDS
TATACACTCATGTTCCATGT+TGG 0.563249 2_3:-61330809 None:intergenic
TTGTGGAGAAAGTCAGCTGA+AGG 0.563848 2_3:+61329538 Msa0304040:CDS
CTCCATGCAATGAGGCCACA+AGG 0.565861 2_3:-61329616 None:intergenic
GCATCAGTTGAGTGAACAAG+AGG 0.573104 2_3:+61330107 Msa0304040:intron
TGGAAACCAATTCTAACACC+TGG 0.581766 2_3:+61328488 Msa0304040:CDS
GAATCCTATAGCACAGAACA+AGG 0.595106 2_3:-61330355 None:intergenic
TATTGAACAATGAAATTGTG+CGG 0.595448 2_3:+61327925 Msa0304040:five_prime_UTR
ATTACTATCAAAATCATCGC+CGG 0.596581 2_3:+61329162 Msa0304040:CDS
GATTCCAATTGCAGTAAATG+TGG 0.597750 2_3:-61328750 None:intergenic
TTCTGTATGTGATCAAGCCA+AGG 0.598227 2_3:+61330382 Msa0304040:CDS
CACAGCAAGAACTACCTGCA+TGG 0.603633 2_3:+61328468 Msa0304040:CDS
AGTTCTTTGTGTGACCAACA+TGG 0.608600 2_3:+61330795 Msa0304040:three_prime_UTR
TGTACTAACAATCCATTTGT+GGG 0.623733 2_3:-61329012 None:intergenic
TATCATGGAACAGAAATCCA+GGG 0.639144 2_3:+61330707 Msa0304040:CDS
AGGATAGTCCACCAACAACA+AGG 0.647718 2_3:-61330335 None:intergenic
ACTGCATCTTTAGCATCAGA+GGG 0.648958 2_3:-61328951 None:intergenic
TGTGGAGAAAGTCAGCTGAA+GGG 0.651423 2_3:+61329539 Msa0304040:CDS
GATCCAGTAGACAAAACAGA+AGG 0.655095 2_3:+61329577 Msa0304040:CDS
TGAACATACTCCATGCAATG+AGG 0.658438 2_3:-61329624 None:intergenic
AAGGAGCCAATTGTTCCTTG+TGG 0.669710 2_3:+61329601 Msa0304040:CDS
ACACATACGAGTTTCAAGGT+AGG 0.677272 2_3:+61330247 Msa0304040:CDS
GGAGAATAACTGTAATGGAG+TGG 0.702814 2_3:-61328013 None:intergenic
AAGTAGGATGGATCCCCAAG+AGG 0.710797 2_3:-61330685 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTGTTTTTTTTTTTTTTT+TGG - chr2_3:61328303-61328322 None:intergenic 10.0%
!!! TTTAGACAAAAATTATATTT+TGG - chr2_3:61328603-61328622 None:intergenic 10.0%
!! ATAAAAATCTTGGAAAATTT+AGG + chr2_3:61328355-61328374 Msa0304040:intron 15.0%
!! TAAAAATCTTGGAAAATTTA+GGG + chr2_3:61328356-61328375 Msa0304040:intron 15.0%
!!! TATAATTTTTGTCTAAATCA+CGG + chr2_3:61328606-61328625 Msa0304040:intron 15.0%
!!! CAACTGAATTTTATTTATAA+TGG + chr2_3:61328867-61328886 Msa0304040:intron 15.0%
!! ACTAATTATTATTTCCATTT+AGG - chr2_3:61329079-61329098 None:intergenic 15.0%
!! TTTATGTTAGGAAATTAATA+TGG + chr2_3:61330575-61330594 Msa0304040:intron 15.0%
!! ACAATTTCATTGTTCAATAT+TGG - chr2_3:61327924-61327943 None:intergenic 20.0%
!! ATTAAGTTACATTAACATGA+TGG - chr2_3:61328037-61328056 None:intergenic 20.0%
!!! ATTTTCCAAGATTTTTATAC+AGG - chr2_3:61328353-61328372 None:intergenic 20.0%
!! TATTAAGAAACTGTAAGAAA+TGG - chr2_3:61328678-61328697 None:intergenic 20.0%
!!! TTTATGTCTGTAATTTTATC+AGG + chr2_3:61328721-61328740 Msa0304040:intron 20.0%
!!! TTTTCATTTTCATACCTAAA+TGG + chr2_3:61329062-61329081 Msa0304040:intron 20.0%
!!! ATTTTCAGTGTTATCAATTA+CGG + chr2_3:61329192-61329211 Msa0304040:intron 20.0%
!! AACAAAAACAAATTTACTTG+AGG + chr2_3:61329400-61329419 Msa0304040:intron 20.0%
!! ATCATCCAAAATCATATTAA+AGG - chr2_3:61329478-61329497 None:intergenic 20.0%
!! AGTGACAAAAATTCTAAATT+TGG + chr2_3:61329715-61329734 Msa0304040:CDS 20.0%
!! TTAAACTGTTTATCCAAATA+GGG - chr2_3:61329820-61329839 None:intergenic 20.0%
!! ATTAAACTGTTTATCCAAAT+AGG - chr2_3:61329821-61329840 None:intergenic 20.0%
!! GTTCTGATAAAATTTATGTT+AGG + chr2_3:61330563-61330582 Msa0304040:intron 20.0%
!! CTTGTAATATATTTGCATAA+AGG - chr2_3:61330850-61330869 None:intergenic 20.0%
! TATTGAACAATGAAATTGTG+CGG + chr2_3:61327925-61327944 Msa0304040:five_prime_UTR 25.0%
!!! TTGTTTGTTTTATCAAACGT+TGG - chr2_3:61327955-61327974 None:intergenic 25.0%
! TGTTAATACGAAATGATGAA+AGG - chr2_3:61328063-61328082 None:intergenic 25.0%
!! TTGGAAGTTTTCTTTGAATT+TGG - chr2_3:61328155-61328174 None:intergenic 25.0%
! CAAATTGTAAGTGCAAATTA+AGG - chr2_3:61328194-61328213 None:intergenic 25.0%
! GAATAATGAATCATTGTTTC+AGG - chr2_3:61328281-61328300 None:intergenic 25.0%
! TAATTAGTTGCAAACTTTAC+AGG + chr2_3:61329091-61329110 Msa0304040:intron 25.0%
!! TTTGATAGTAATTATCAAGC+TGG - chr2_3:61329154-61329173 None:intergenic 25.0%
!! TGATGCCTTTAATATGATTT+TGG + chr2_3:61329470-61329489 Msa0304040:intron 25.0%
!! TATCCTAAAAATTTTCAGAG+TGG + chr2_3:61329748-61329767 Msa0304040:CDS 25.0%
! ACTTATACGTAAGTACTTAT+AGG - chr2_3:61329859-61329878 None:intergenic 25.0%
!! TTGCTTATTTCTCAAGTAAA+AGG - chr2_3:61330070-61330089 None:intergenic 25.0%
!!! GCTTTTTCTATACTACTTTA+TGG + chr2_3:61330420-61330439 Msa0304040:intron 25.0%
!! AAGAAAAGCTGAAACATTTT+TGG + chr2_3:61330608-61330627 Msa0304040:intron 25.0%
! ATGATGGAGAATAACTGTAA+TGG - chr2_3:61328021-61328040 None:intergenic 30.0%
GATATGACTTCATCAAAAGA+TGG + chr2_3:61328119-61328138 Msa0304040:CDS 30.0%
! GAAGTTTTCTTTGAATTTGG+AGG - chr2_3:61328152-61328171 None:intergenic 30.0%
GCAAATTAAGGCATACATTT+AGG - chr2_3:61328182-61328201 None:intergenic 30.0%
ACATCATAGGAAGAAAAAGA+AGG - chr2_3:61328256-61328275 None:intergenic 30.0%
!! ATTGTTTCAGGTTACATCAT+AGG - chr2_3:61328269-61328288 None:intergenic 30.0%
CATTTGTTCCTTGTGATTTA+CGG + chr2_3:61328325-61328344 Msa0304040:intron 30.0%
! AATTTTTGTCTAAATCACGG+TGG + chr2_3:61328609-61328628 Msa0304040:intron 30.0%
GAAGTGCATGCTTAAATTAA+CGG - chr2_3:61328656-61328675 None:intergenic 30.0%
! TTGCATCATTGTTTTCATCA+GGG + chr2_3:61328792-61328811 Msa0304040:CDS 30.0%
TGGTAAAGAAATACTAATGC+AGG + chr2_3:61328887-61328906 Msa0304040:intron 30.0%
TAAAGAAATACTAATGCAGG+TGG + chr2_3:61328890-61328909 Msa0304040:intron 30.0%
TGTACTAACAATCCATTTGT+GGG - chr2_3:61329015-61329034 None:intergenic 30.0%
ATGTACTAACAATCCATTTG+TGG - chr2_3:61329016-61329035 None:intergenic 30.0%
ATTACTATCAAAATCATCGC+CGG + chr2_3:61329162-61329181 Msa0304040:CDS 30.0%
! TGACACCTACAAATTTTCAA+TGG + chr2_3:61329648-61329667 Msa0304040:CDS 30.0%
GTTGTCCATTGAAAATTTGT+AGG - chr2_3:61329656-61329675 None:intergenic 30.0%
! CAAATTTTCAATGGACAACA+AGG + chr2_3:61329657-61329676 Msa0304040:CDS 30.0%
TCAACAAAAAGAACATAGCA+TGG + chr2_3:61329689-61329708 Msa0304040:CDS 30.0%
CAACAAAAAGAACATAGCAT+GGG + chr2_3:61329690-61329709 Msa0304040:CDS 30.0%
AACAAAAAGAACATAGCATG+GGG + chr2_3:61329691-61329710 Msa0304040:CDS 30.0%
TTTCCATAAGCTCTTTCAAA+CGG + chr2_3:61329987-61330006 Msa0304040:intron 30.0%
CAACTTTCAGAAAACTGTAT+GGG + chr2_3:61330163-61330182 Msa0304040:CDS 30.0%
GCAAAATATTTCCTTTACCT+TGG - chr2_3:61330402-61330421 None:intergenic 30.0%
! TTGAATACGCTCTTTTCTAT+TGG + chr2_3:61330527-61330546 Msa0304040:intron 30.0%
ATTTCTGTTCCATGATAAGT+AGG - chr2_3:61330704-61330723 None:intergenic 30.0%
! TAACTGTAATGGAGTGGTTA+AGG - chr2_3:61328010-61328029 None:intergenic 35.0%
TGATGAAGTCATATCCATCA+TGG - chr2_3:61328114-61328133 None:intergenic 35.0%
! AGGCATACATTTAGGTTTCT+TGG - chr2_3:61328174-61328193 None:intergenic 35.0%
CGTAAATCACAAGGAACAAA+TGG - chr2_3:61328327-61328346 None:intergenic 35.0%
! TTAGTGCATGTTTGAAACCA+CGG + chr2_3:61328542-61328561 Msa0304040:intron 35.0%
ATTGCCACATTTACTGCAAT+TGG + chr2_3:61328746-61328765 Msa0304040:CDS 35.0%
GATTCCAATTGCAGTAAATG+TGG - chr2_3:61328753-61328772 None:intergenic 35.0%
GGAATCATCTTTATCCCTAT+TGG + chr2_3:61328767-61328786 Msa0304040:CDS 35.0%
ACAATGATGCAAGACCAATA+GGG - chr2_3:61328784-61328803 None:intergenic 35.0%
AACAATGATGCAAGACCAAT+AGG - chr2_3:61328785-61328804 None:intergenic 35.0%
! CTTGCATCATTGTTTTCATC+AGG + chr2_3:61328791-61328810 Msa0304040:CDS 35.0%
! ATCATTGTTTTCATCAGGGA+AGG + chr2_3:61328796-61328815 Msa0304040:CDS 35.0%
AGCTGGTAGTAGATAAAAAC+AGG - chr2_3:61329137-61329156 None:intergenic 35.0%
AACACTGAAAATGTGCATAC+CGG - chr2_3:61329184-61329203 None:intergenic 35.0%
GTGTTATCAATTACGGATCA+CGG + chr2_3:61329199-61329218 Msa0304040:intron 35.0%
GTAGAAATGATAAGCAGTTG+TGG + chr2_3:61329521-61329540 Msa0304040:CDS 35.0%
! TTTCCTTCTGTTTTGTCTAC+TGG - chr2_3:61329583-61329602 None:intergenic 35.0%
AGTAGACAAAACAGAAGGAA+AGG + chr2_3:61329582-61329601 Msa0304040:CDS 35.0%
!! CCTCCACTCTGAAAATTTTT+AGG - chr2_3:61329754-61329773 None:intergenic 35.0%
! CCTAAAAATTTTCAGAGTGG+AGG + chr2_3:61329751-61329770 Msa0304040:CDS 35.0%
TTATCCAAATAGGGACTTAC+AGG - chr2_3:61329811-61329830 None:intergenic 35.0%
AACAAGAGGATCTGATTGTT+TGG + chr2_3:61330121-61330140 Msa0304040:CDS 35.0%
!! CCATACAGTTTTCTGAAAGT+TGG - chr2_3:61330165-61330184 None:intergenic 35.0%
CCAACTTTCAGAAAACTGTA+TGG + chr2_3:61330162-61330181 Msa0304040:CDS 35.0%
TACAACACATACGAGTTTCA+AGG + chr2_3:61330243-61330262 Msa0304040:CDS 35.0%
! TGGTTCTATCAACTACAACT+TGG + chr2_3:61330277-61330296 Msa0304040:CDS 35.0%
CTATCAACTACAACTTGGAT+TGG + chr2_3:61330282-61330301 Msa0304040:CDS 35.0%
TGGTGGGAAAAATAGATTCT+TGG + chr2_3:61330302-61330321 Msa0304040:CDS 35.0%
GGTGGGAAAAATAGATTCTT+GGG + chr2_3:61330303-61330322 Msa0304040:CDS 35.0%
GTGGGAAAAATAGATTCTTG+GGG + chr2_3:61330304-61330323 Msa0304040:CDS 35.0%
TTATCATGGAACAGAAATCC+AGG + chr2_3:61330706-61330725 Msa0304040:CDS 35.0%
TATCATGGAACAGAAATCCA+GGG + chr2_3:61330707-61330726 Msa0304040:CDS 35.0%
!!! AGACATCATTTTAAGATCCC+TGG - chr2_3:61330727-61330746 None:intergenic 35.0%
TATACACTCATGTTCCATGT+TGG - chr2_3:61330812-61330831 None:intergenic 35.0%
! GGAGAATAACTGTAATGGAG+TGG - chr2_3:61328016-61328035 None:intergenic 40.0%
CGGAGCCTGTATAAAAATCT+TGG + chr2_3:61328345-61328364 Msa0304040:intron 40.0%
! CTTGGAAAATTTAGGGCTTG+AGG + chr2_3:61328363-61328382 Msa0304040:intron 40.0%
! GTTAGAATTGGTTTCCATGC+AGG - chr2_3:61328485-61328504 None:intergenic 40.0%
TGGAAACCAATTCTAACACC+TGG + chr2_3:61328488-61328507 Msa0304040:CDS 40.0%
AACCAATTCTAACACCTGGA+TGG + chr2_3:61328492-61328511 Msa0304040:CDS 40.0%
ACCAATTCTAACACCTGGAT+GGG + chr2_3:61328493-61328512 Msa0304040:CDS 40.0%
GTTGCATATTATACCCATCC+AGG - chr2_3:61328509-61328528 None:intergenic 40.0%
AGAAATACTAATGCAGGTGG+TGG + chr2_3:61328893-61328912 Msa0304040:intron 40.0%
ACTGCATCTTTAGCATCAGA+GGG - chr2_3:61328954-61328973 None:intergenic 40.0%
AACTGCATCTTTAGCATCAG+AGG - chr2_3:61328955-61328974 None:intergenic 40.0%
TCATTGAAAATCGTGCTGTG+TGG - chr2_3:61329380-61329399 None:intergenic 40.0%
! TTTTGTCTACTGGATCACAG+TGG - chr2_3:61329573-61329592 None:intergenic 40.0%
GATCCAGTAGACAAAACAGA+AGG + chr2_3:61329577-61329596 Msa0304040:CDS 40.0%
TGAACATACTCCATGCAATG+AGG - chr2_3:61329627-61329646 None:intergenic 40.0%
TTTCAGAGTGGAGGTTTGAT+TGG + chr2_3:61329760-61329779 Msa0304040:CDS 40.0%
CATACCTGTAAGTCCCTATT+TGG + chr2_3:61329804-61329823 Msa0304040:intron 40.0%
TGACCGTTTGAAAGAGCTTA+TGG - chr2_3:61329993-61330012 None:intergenic 40.0%
ACACATACGAGTTTCAAGGT+AGG + chr2_3:61330247-61330266 Msa0304040:CDS 40.0%
GTTTCAAGGTAGGAAGAAGT+TGG + chr2_3:61330257-61330276 Msa0304040:CDS 40.0%
! TCAACTACAACTTGGATTGG+TGG + chr2_3:61330285-61330304 Msa0304040:CDS 40.0%
!! CAACTACAACTTGGATTGGT+GGG + chr2_3:61330286-61330305 Msa0304040:CDS 40.0%
!! ATTGCATACCTTGTTGTTGG+TGG + chr2_3:61330327-61330346 Msa0304040:CDS 40.0%
CTATCCTTGTTCTGTGCTAT+AGG + chr2_3:61330351-61330370 Msa0304040:CDS 40.0%
GAATCCTATAGCACAGAACA+AGG - chr2_3:61330358-61330377 None:intergenic 40.0%
TTCTGTATGTGATCAAGCCA+AGG + chr2_3:61330382-61330401 Msa0304040:CDS 40.0%
ATGTGATCAAGCCAAGGTAA+AGG + chr2_3:61330388-61330407 Msa0304040:intron 40.0%
CTGTTCCATGATAAGTAGGA+TGG - chr2_3:61330700-61330719 None:intergenic 40.0%
AGTTCTTTGTGTGACCAACA+TGG + chr2_3:61330795-61330814 Msa0304040:three_prime_UTR 40.0%
GTGAAAGATCGCAACCATGA+TGG + chr2_3:61328097-61328116 Msa0304040:exon 45.0%
TACAGGCTCCGTAAATCACA+AGG - chr2_3:61328336-61328355 None:intergenic 45.0%
ACCCATCCAGGTGTTAGAAT+TGG - chr2_3:61328497-61328516 None:intergenic 45.0%
TGATATTGTCAAACTCGCCG+TGG - chr2_3:61328562-61328581 None:intergenic 45.0%
ACAAGACTTGCACCCACAAA+TGG + chr2_3:61329000-61329019 Msa0304040:CDS 45.0%
TTGTGGAGAAAGTCAGCTGA+AGG + chr2_3:61329538-61329557 Msa0304040:CDS 45.0%
TGTGGAGAAAGTCAGCTGAA+GGG + chr2_3:61329539-61329558 Msa0304040:CDS 45.0%
AAGGAGCCAATTGTTCCTTG+TGG + chr2_3:61329601-61329620 Msa0304040:CDS 45.0%
ATGAGGCCACAAGGAACAAT+TGG - chr2_3:61329610-61329629 None:intergenic 45.0%
GCATCAGTTGAGTGAACAAG+AGG + chr2_3:61330107-61330126 Msa0304040:intron 45.0%
! GGGATTGCATACCTTGTTGT+TGG + chr2_3:61330324-61330343 Msa0304040:CDS 45.0%
AGGATAGTCCACCAACAACA+AGG - chr2_3:61330338-61330357 None:intergenic 45.0%
! TGCTCTTTTTGCAGACCTCT+TGG + chr2_3:61330670-61330689 Msa0304040:intron 45.0%
! GCTCTTTTTGCAGACCTCTT+GGG + chr2_3:61330671-61330690 Msa0304040:intron 45.0%
! CTCTTTTTGCAGACCTCTTG+GGG + chr2_3:61330672-61330691 Msa0304040:intron 45.0%
GGGATCCATCCTACTTATCA+TGG + chr2_3:61330692-61330711 Msa0304040:CDS 45.0%
CACAGCAAGAACTACCTGCA+TGG + chr2_3:61328468-61328487 Msa0304040:CDS 50.0%
!! GTGGGTGCAAGTCTTGTTAG+TGG - chr2_3:61328997-61329016 None:intergenic 50.0%
TTCCTTGTGGCCTCATTGCA+TGG + chr2_3:61329614-61329633 Msa0304040:CDS 50.0%
CAGAGTGGAGGTTTGATTGG+AGG + chr2_3:61329763-61329782 Msa0304040:CDS 50.0%
AAGTAGGATGGATCCCCAAG+AGG - chr2_3:61330688-61330707 None:intergenic 50.0%
CTCCATGCAATGAGGCCACA+AGG - chr2_3:61329619-61329638 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 61327905 61330893 61327905 ID=Msa0304040;Name=Msa0304040
chr2_3 mRNA 61327905 61330893 61327905 ID=Msa0304040-mRNA-1;Parent=Msa0304040;Name=Msa0304040-mRNA-1;_AED=0.06;_eAED=0.06;_QI=208|1|1|1|1|1|8|152|347
chr2_3 exon 61327905 61328185 61327905 ID=Msa0304040-mRNA-1:exon:20239;Parent=Msa0304040-mRNA-1
chr2_3 exon 61328456 61328514 61328456 ID=Msa0304040-mRNA-1:exon:20240;Parent=Msa0304040-mRNA-1
chr2_3 exon 61328743 61328817 61328743 ID=Msa0304040-mRNA-1:exon:20241;Parent=Msa0304040-mRNA-1
chr2_3 exon 61328909 61329025 61328909 ID=Msa0304040-mRNA-1:exon:20242;Parent=Msa0304040-mRNA-1
chr2_3 exon 61329113 61329183 61329113 ID=Msa0304040-mRNA-1:exon:20243;Parent=Msa0304040-mRNA-1
chr2_3 exon 61329510 61329810 61329510 ID=Msa0304040-mRNA-1:exon:20244;Parent=Msa0304040-mRNA-1
chr2_3 exon 61330114 61330403 61330114 ID=Msa0304040-mRNA-1:exon:20245;Parent=Msa0304040-mRNA-1
chr2_3 exon 61330684 61330893 61330684 ID=Msa0304040-mRNA-1:exon:20246;Parent=Msa0304040-mRNA-1
chr2_3 five_prime_UTR 61327905 61328112 61327905 ID=Msa0304040-mRNA-1:five_prime_utr;Parent=Msa0304040-mRNA-1
chr2_3 CDS 61328113 61328185 61328113 ID=Msa0304040-mRNA-1:cds;Parent=Msa0304040-mRNA-1
chr2_3 CDS 61328456 61328514 61328456 ID=Msa0304040-mRNA-1:cds;Parent=Msa0304040-mRNA-1
chr2_3 CDS 61328743 61328817 61328743 ID=Msa0304040-mRNA-1:cds;Parent=Msa0304040-mRNA-1
chr2_3 CDS 61328909 61329025 61328909 ID=Msa0304040-mRNA-1:cds;Parent=Msa0304040-mRNA-1
chr2_3 CDS 61329113 61329183 61329113 ID=Msa0304040-mRNA-1:cds;Parent=Msa0304040-mRNA-1
chr2_3 CDS 61329510 61329810 61329510 ID=Msa0304040-mRNA-1:cds;Parent=Msa0304040-mRNA-1
chr2_3 CDS 61330114 61330403 61330114 ID=Msa0304040-mRNA-1:cds;Parent=Msa0304040-mRNA-1
chr2_3 CDS 61330684 61330741 61330684 ID=Msa0304040-mRNA-1:cds;Parent=Msa0304040-mRNA-1
chr2_3 three_prime_UTR 61330742 61330893 61330742 ID=Msa0304040-mRNA-1:three_prime_utr;Parent=Msa0304040-mRNA-1
Gene Sequence

>Msa0304040

ATGATGGATATGACTTCATCAAAAGATGGACAATCTCCTCCAAATTCAAAGAAAACTTCCAAGAAACCTAAATATTCAAGATTCTCACAGCAAGAACTACCTGCATGGAAACCAATTCTAACACCTGGATGGGTGATTGCCACATTTACTGCAATTGGAATCATCTTTATCCCTATTGGTCTTGCATCATTGTTTTCATCAGGGAAGGTGGTGGAAGCTGAATTCAGATATGATGAAACGTGTCTTTCTCCCTCTGATGCTAAAGATGCAGTTGCATATATTAAAAGTGATACCACTAACAAGACTTGCACCCACAAATGGATTGTTGAGCAAAAAATGCAAGCTCCTGTTTTTATCTACTACCAGCTTGATAATTACTATCAAAATCATCGCCGATATGTTAAGAGTAGAAATGATAAGCAGTTGTGGAGAAAGTCAGCTGAAGGGCAAACAGACCACTGTGATCCAGTAGACAAAACAGAAGGAAAGGAGCCAATTGTTCCTTGTGGCCTCATTGCATGGAGTATGTTCAATGACACCTACAAATTTTCAATGGACAACAAGGATTTAACTGTCAACAAAAAGAACATAGCATGGGGAAGTGACAAAAATTCTAAATTTGGTCGTGAAGTTTATCCTAAAAATTTTCAGAGTGGAGGTTTGATTGGAGGTGCAAAACTCAATGAAAGCATACCTTTGAGTGAACAAGAGGATCTGATTGTTTGGATGAGAACAGCAGCATTACCAACTTTCAGAAAACTGTATGGGAAGATAGAGTCTGATCTTGAAGTTAATGATGAGATAGAAATACTAATTCAGAACAATTACAACACATACGAGTTTCAAGGTAGGAAGAAGTTGGTTCTATCAACTACAACTTGGATTGGTGGGAAAAATAGATTCTTGGGGATTGCATACCTTGTTGTTGGTGGACTATCCTTGTTCTGTGCTATAGGATTCATTCTTCTGTATGTGATCAAGCCAAGACCTCTTGGGGATCCATCCTACTTATCATGGAACAGAAATCCAGGGATCTTAAAATGA

Protein sequence

>Msa0304040

MMDMTSSKDGQSPPNSKKTSKKPKYSRFSQQELPAWKPILTPGWVIATFTAIGIIFIPIGLASLFSSGKVVEAEFRYDETCLSPSDAKDAVAYIKSDTTNKTCTHKWIVEQKMQAPVFIYYQLDNYYQNHRRYVKSRNDKQLWRKSAEGQTDHCDPVDKTEGKEPIVPCGLIAWSMFNDTYKFSMDNKDLTVNKKNIAWGSDKNSKFGREVYPKNFQSGGLIGGAKLNESIPLSEQEDLIVWMRTAALPTFRKLYGKIESDLEVNDEIEILIQNNYNTYEFQGRKKLVLSTTTWIGGKNRFLGIAYLVVGGLSLFCAIGFILLYVIKPRPLGDPSYLSWNRNPGILK*