AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0266120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0266120 MtrunA17_Chr2g0331311 96.542 347 12 0 1 347 1 347 0.0 700
Msa0266120 MtrunA17_Chr7g0253651 66.867 332 109 1 16 346 17 348 1.35e-169 476
Msa0266120 MtrunA17_Chr2g0310111 62.500 328 121 2 17 344 21 346 1.96e-156 442
Msa0266120 MtrunA17_Chr8g0356981 65.549 328 110 3 16 343 14 338 4.05e-154 436
Msa0266120 MtrunA17_Chr2g0304231 58.095 315 131 1 27 341 30 343 1.06e-133 385
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0266120 AT3G12740.1 64.024 328 116 2 17 344 23 348 1.34e-156 443
Msa0266120 AT1G54320.1 62.805 328 120 2 17 344 22 347 4.89e-154 437
Msa0266120 AT1G79450.1 62.538 331 122 2 17 347 22 350 1.32e-152 433
Msa0266120 AT1G16360.2 62.006 329 123 2 16 344 21 347 5.83e-152 431
Msa0266120 AT1G16360.1 61.755 319 120 2 26 344 17 333 3.10e-146 416
Msa0266120 AT1G16360.4 60.855 304 117 2 26 329 17 318 6.13e-136 390
Msa0266120 AT1G79450.2 61.649 279 105 2 69 347 7 283 3.10e-124 358
Msa0266120 AT5G46150.1 52.632 342 157 3 1 341 1 338 2.09e-119 348
Msa0266120 AT5G46150.2 52.632 342 157 3 1 341 1 338 2.09e-119 348
Msa0266120 AT5G46150.3 52.727 330 154 2 1 329 1 329 2.91e-116 340
Msa0266120 AT1G16360.3 55.502 209 91 2 26 234 17 223 1.15e-79 243
Msa0266120 AT1G16360.5 55.502 209 91 2 26 234 17 223 1.15e-79 243
Msa0266120 AT5G46150.4 49.145 234 117 2 1 233 1 233 3.35e-74 229

Find 70 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATTTCATTGTTCAATAT+TGG 0.255001 2_2:-66545023 None:intergenic
GGAATCATCTTTATCCCTAT+TGG 0.278510 2_2:+66545865 Msa0266120:CDS
CTATCCTTGTTCTGTGCTAT+AGG 0.299641 2_2:+66547457 Msa0266120:CDS
ATTGCCACATTTACTGCAAT+TGG 0.348370 2_2:+66545844 Msa0266120:CDS
TTTCAGAGTGGAGGTTTGAT+TGG 0.358409 2_2:+66546858 Msa0266120:CDS
ACCCATCCAGGTGTTAGAAT+TGG 0.365146 2_2:-66545592 None:intergenic
CTTGTAATATATTTGCATAA+AGG 0.374106 2_2:-66547953 None:intergenic
GTTGTCCATTGAAAATTTGT+AGG 0.382564 2_2:-66546751 None:intergenic
AACAATGATGCAAGACCAAT+AGG 0.394455 2_2:-66545880 None:intergenic
AACAAGAGGATCTGATTGTT+TGG 0.396536 2_2:+66547227 Msa0266120:CDS
TAACTGTAATGGAGTGGTTA+AGG 0.402936 2_2:-66545109 None:intergenic
GGGATTGCATACCTTGTTGT+TGG 0.410908 2_2:+66547430 Msa0266120:CDS
CAGAGTGGAGGTTTGATTGG+AGG 0.413776 2_2:+66546861 Msa0266120:CDS
CCAACTTTCAGAAAACTGTA+TGG 0.436379 2_2:+66547268 Msa0266120:CDS
ACAAGACTTGCACCCACAAA+TGG 0.438149 2_2:+66546098 Msa0266120:CDS
CAACTACAACTTGGATTGGT+GGG 0.445444 2_2:+66547392 Msa0266120:CDS
ATGAGGCCACAAGGAACAAT+TGG 0.445844 2_2:-66546705 None:intergenic
TTCCTTGTGGCCTCATTGCA+TGG 0.449722 2_2:+66546712 Msa0266120:CDS
TACAACACATACGAGTTTCA+AGG 0.464659 2_2:+66547349 Msa0266120:CDS
GTTAGAATTGGTTTCCATGC+AGG 0.464924 2_2:-66545580 None:intergenic
GGGATCCATCCTACTTATCA+TGG 0.480170 2_2:+66547798 Msa0266120:CDS
ATTGCATACCTTGTTGTTGG+TGG 0.482393 2_2:+66547433 Msa0266120:CDS
GTGGGTGCAAGTCTTGTTAG+TGG 0.484884 2_2:-66546092 None:intergenic
CTATCAACTACAACTTGGAT+TGG 0.485356 2_2:+66547388 Msa0266120:CDS
TTATCATGGAACAGAAATCC+AGG 0.490301 2_2:+66547812 Msa0266120:CDS
TGATGAAGTCATATCCATCA+TGG 0.492388 2_2:-66545213 None:intergenic
GTAGAAATGATAAGCAGTTG+TGG 0.499291 2_2:+66546619 Msa0266120:CDS
TTTGATAGTAATTATCAAGC+TGG 0.503169 2_2:-66546249 None:intergenic
ATTAAGTTACATTAACATGA+TGG 0.504743 2_2:-66545136 None:intergenic
CTGTTCCATGATAAGTAGGA+TGG 0.511626 2_2:-66547803 None:intergenic
ATTTCTGTTCCATGATAAGT+AGG 0.512059 2_2:-66547807 None:intergenic
GTTGCGGTGGGGAAATGAAA+TGG 0.512806 2_2:+66544999 None:intergenic
GTTTCAAGGTAGGAAGAAGT+TGG 0.512965 2_2:+66547363 Msa0266120:CDS
ACAATGATGCAAGACCAATA+GGG 0.513968 2_2:-66545879 None:intergenic
ACCAATTCTAACACCTGGAT+GGG 0.523126 2_2:+66545591 Msa0266120:CDS
ATGATGGAGAATAACTGTAA+TGG 0.524774 2_2:-66545120 None:intergenic
GTGAAAGATCGCAACCATGA+TGG 0.527489 2_2:+66545199 Msa0266120:exon
TGGTTCTATCAACTACAACT+TGG 0.538526 2_2:+66547383 Msa0266120:CDS
ATGTACTAACAATCCATTTG+TGG 0.539027 2_2:-66546111 None:intergenic
CAACTTTCAGAAAACTGTAT+GGG 0.539444 2_2:+66547269 Msa0266120:CDS
TGTTAATACGAAATGATGAA+AGG 0.542675 2_2:-66545162 None:intergenic
GATATGACTTCATCAAAAGA+TGG 0.544518 2_2:+66545221 Msa0266120:CDS
AACCAATTCTAACACCTGGA+TGG 0.544797 2_2:+66545590 Msa0266120:CDS
GTTGCATATTATACCCATCC+AGG 0.548338 2_2:-66545604 None:intergenic
TCAACTACAACTTGGATTGG+TGG 0.549590 2_2:+66547391 Msa0266120:CDS
AACTGCATCTTTAGCATCAG+AGG 0.555713 2_2:-66546050 None:intergenic
AGTAGACAAAACAGAAGGAA+AGG 0.558583 2_2:+66546680 Msa0266120:CDS
TATACACTCATGTTCCATGT+TGG 0.563249 2_2:-66547915 None:intergenic
TTGTGGAGAAAGTCAGCTGA+AGG 0.563848 2_2:+66546636 Msa0266120:CDS
CTCCATGCAATGAGGCCACA+AGG 0.565861 2_2:-66546714 None:intergenic
GCATCAGTTGAGTGAACAAG+AGG 0.573104 2_2:+66547213 Msa0266120:intron
TGGAAACCAATTCTAACACC+TGG 0.581766 2_2:+66545586 Msa0266120:CDS
GAATCCTATAGCACAGAACA+AGG 0.595106 2_2:-66547461 None:intergenic
TATTGAACAATGAAATTGTG+CGG 0.595448 2_2:+66545027 Msa0266120:five_prime_UTR
ATTACTATCAAAATCATCGC+CGG 0.596581 2_2:+66546260 Msa0266120:CDS
GATTCCAATTGCAGTAAATG+TGG 0.597750 2_2:-66545848 None:intergenic
TTCTGTATGTGATCAAGCCA+AGG 0.598227 2_2:+66547488 Msa0266120:CDS
CACAGCAAGAACTACCTGCA+TGG 0.603633 2_2:+66545566 Msa0266120:CDS
AGTTCTTTGTGTGACCAACA+TGG 0.608600 2_2:+66547901 Msa0266120:three_prime_UTR
TGTACTAACAATCCATTTGT+GGG 0.623733 2_2:-66546110 None:intergenic
TATCATGGAACAGAAATCCA+GGG 0.639144 2_2:+66547813 Msa0266120:CDS
AGGATAGTCCACCAACAACA+AGG 0.647718 2_2:-66547441 None:intergenic
ACTGCATCTTTAGCATCAGA+GGG 0.648958 2_2:-66546049 None:intergenic
TGTGGAGAAAGTCAGCTGAA+GGG 0.651423 2_2:+66546637 Msa0266120:CDS
GATCCAGTAGACAAAACAGA+AGG 0.655095 2_2:+66546675 Msa0266120:CDS
TGAACATACTCCATGCAATG+AGG 0.658438 2_2:-66546722 None:intergenic
AAGGAGCCAATTGTTCCTTG+TGG 0.669710 2_2:+66546699 Msa0266120:CDS
ACACATACGAGTTTCAAGGT+AGG 0.677272 2_2:+66547353 Msa0266120:CDS
GGAGAATAACTGTAATGGAG+TGG 0.702814 2_2:-66545115 None:intergenic
AAGTAGGATGGATCCCCAAG+AGG 0.710797 2_2:-66547791 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAGACAAAAATTATATTT+TGG - chr2_2:66545701-66545720 None:intergenic 10.0%
!! ATTAAAATCTTGGAAAATTT+AGG + chr2_2:66545453-66545472 Msa0266120:intron 15.0%
!! TTAAAATCTTGGAAAATTTA+GGG + chr2_2:66545454-66545473 Msa0266120:intron 15.0%
!!! TATAATTTTTGTCTAAATCA+CGG + chr2_2:66545704-66545723 Msa0266120:intron 15.0%
!!! CAACTGAATTTTATTTATAA+TGG + chr2_2:66545965-66545984 Msa0266120:intron 15.0%
!! TTTATGTTAGGAAATTAATA+TGG + chr2_2:66547681-66547700 Msa0266120:intron 15.0%
!! ACAATTTCATTGTTCAATAT+TGG - chr2_2:66545026-66545045 None:intergenic 20.0%
!! ATTAAGTTACATTAACATGA+TGG - chr2_2:66545139-66545158 None:intergenic 20.0%
!!! TTTGAAGTTTTCTTTGAATT+GGG - chr2_2:66545257-66545276 None:intergenic 20.0%
!!! ATTTTCCAAGATTTTAATAC+AGG - chr2_2:66545451-66545470 None:intergenic 20.0%
!! TATTAAGAAACTGTAAGAAA+TGG - chr2_2:66545776-66545795 None:intergenic 20.0%
!!! TTTATGTCTGTAATTTTATC+AGG + chr2_2:66545819-66545838 Msa0266120:intron 20.0%
!!! TTTTCATTTTCATACCTAAA+TGG + chr2_2:66546160-66546179 Msa0266120:intron 20.0%
!! ACGAATTATTATTTCCATTT+AGG - chr2_2:66546177-66546196 None:intergenic 20.0%
!!! ATTTTCAGTGTTATCAATTA+CGG + chr2_2:66546290-66546309 Msa0266120:intron 20.0%
!! AACAAAAACAAATTTACTTG+AGG + chr2_2:66546498-66546517 Msa0266120:intron 20.0%
!! ATCATCCAAAATCATATTAA+AGG - chr2_2:66546576-66546595 None:intergenic 20.0%
!! AGTGACAAAAATTCTAAATT+TGG + chr2_2:66546813-66546832 Msa0266120:CDS 20.0%
!! TTAAACTGTTTATCCAAATA+GGG - chr2_2:66546918-66546937 None:intergenic 20.0%
!! ATTAAACTGTTTATCCAAAT+AGG - chr2_2:66546919-66546938 None:intergenic 20.0%
!! GTTCTGATAAAATTTATGTT+AGG + chr2_2:66547669-66547688 Msa0266120:intron 20.0%
!! CTTGTAATATATTTGCATAA+AGG - chr2_2:66547956-66547975 None:intergenic 20.0%
! TATTGAACAATGAAATTGTG+CGG + chr2_2:66545027-66545046 Msa0266120:five_prime_UTR 25.0%
!!! TTGTTTGTTTTATCAAACGT+TGG - chr2_2:66545057-66545076 None:intergenic 25.0%
! TGTTAATACGAAATGATGAA+AGG - chr2_2:66545165-66545184 None:intergenic 25.0%
!!! CTTTGAAGTTTTCTTTGAAT+TGG - chr2_2:66545258-66545277 None:intergenic 25.0%
! GCAAATTAAGACATACATTT+AGG - chr2_2:66545284-66545303 None:intergenic 25.0%
!!! ATTGTTTCAAGTTACATCAT+AGG - chr2_2:66545366-66545385 None:intergenic 25.0%
!! TTTGATAGTAATTATCAAGC+TGG - chr2_2:66546252-66546271 None:intergenic 25.0%
!! TGATGCCTTTAATATGATTT+TGG + chr2_2:66546568-66546587 Msa0266120:intron 25.0%
!! TATCCTAAAAATTTTCAGAG+TGG + chr2_2:66546846-66546865 Msa0266120:CDS 25.0%
! TGTAACATGTAAGTACTTAT+AGG - chr2_2:66546957-66546976 None:intergenic 25.0%
!! TTGCTTATTTCTCAAGTAAA+AGG - chr2_2:66547176-66547195 None:intergenic 25.0%
!!! GCTTTTTCTATACTACTTTA+TGG + chr2_2:66547526-66547545 Msa0266120:intron 25.0%
!! AAGAAAAGCTGAAACATTTT+TGG + chr2_2:66547714-66547733 Msa0266120:intron 25.0%
! ATGATGGAGAATAACTGTAA+TGG - chr2_2:66545123-66545142 None:intergenic 30.0%
GATATGACTTCATCAAAAGA+TGG + chr2_2:66545221-66545240 Msa0266120:CDS 30.0%
ACATCATAGGAAGAAAAAGA+AGG - chr2_2:66545353-66545372 None:intergenic 30.0%
CATTTGTTCCTTGTGATTTA+CGG + chr2_2:66545423-66545442 Msa0266120:intron 30.0%
! AATTTTTGTCTAAATCACGG+TGG + chr2_2:66545707-66545726 Msa0266120:intron 30.0%
GAAGTGCATGCTTAAATTAA+CGG - chr2_2:66545754-66545773 None:intergenic 30.0%
! TTGCATCATTGTTTTCATCA+GGG + chr2_2:66545890-66545909 Msa0266120:CDS 30.0%
TGGTAAAGAAATACTAATGC+AGG + chr2_2:66545985-66546004 Msa0266120:intron 30.0%
TAAAGAAATACTAATGCAGG+TGG + chr2_2:66545988-66546007 Msa0266120:intron 30.0%
TGTACTAACAATCCATTTGT+GGG - chr2_2:66546113-66546132 None:intergenic 30.0%
ATGTACTAACAATCCATTTG+TGG - chr2_2:66546114-66546133 None:intergenic 30.0%
TAATTCGTTGCAAACTTTAC+AGG + chr2_2:66546189-66546208 Msa0266120:intron 30.0%
ATTACTATCAAAATCATCGC+CGG + chr2_2:66546260-66546279 Msa0266120:CDS 30.0%
! TGACACCTACAAATTTTCAA+TGG + chr2_2:66546746-66546765 Msa0266120:CDS 30.0%
GTTGTCCATTGAAAATTTGT+AGG - chr2_2:66546754-66546773 None:intergenic 30.0%
! CAAATTTTCAATGGACAACA+AGG + chr2_2:66546755-66546774 Msa0266120:CDS 30.0%
TCAACAAAAAGAACATAGCA+TGG + chr2_2:66546787-66546806 Msa0266120:CDS 30.0%
CAACAAAAAGAACATAGCAT+GGG + chr2_2:66546788-66546807 Msa0266120:CDS 30.0%
AACAAAAAGAACATAGCATG+GGG + chr2_2:66546789-66546808 Msa0266120:CDS 30.0%
TTTCCATAAGCTCTTTCAAA+CGG + chr2_2:66547092-66547111 Msa0266120:intron 30.0%
CAACTTTCAGAAAACTGTAT+GGG + chr2_2:66547269-66547288 Msa0266120:CDS 30.0%
GCAAAATATTTCCTTTACCT+TGG - chr2_2:66547508-66547527 None:intergenic 30.0%
! TTGAATACGCTCTTTTCTAT+TGG + chr2_2:66547633-66547652 Msa0266120:intron 30.0%
ATTTCTGTTCCATGATAAGT+AGG - chr2_2:66547810-66547829 None:intergenic 30.0%
! TAACTGTAATGGAGTGGTTA+AGG - chr2_2:66545112-66545131 None:intergenic 35.0%
TGATGAAGTCATATCCATCA+TGG - chr2_2:66545216-66545235 None:intergenic 35.0%
! GAAGTTTTCTTTGAATTGGG+AGG - chr2_2:66545254-66545273 None:intergenic 35.0%
CGTAAATCACAAGGAACAAA+TGG - chr2_2:66545425-66545444 None:intergenic 35.0%
! TTAGTGCATGTTTGAAACCA+CGG + chr2_2:66545640-66545659 Msa0266120:intron 35.0%
ATTGCCACATTTACTGCAAT+TGG + chr2_2:66545844-66545863 Msa0266120:CDS 35.0%
GATTCCAATTGCAGTAAATG+TGG - chr2_2:66545851-66545870 None:intergenic 35.0%
GGAATCATCTTTATCCCTAT+TGG + chr2_2:66545865-66545884 Msa0266120:CDS 35.0%
ACAATGATGCAAGACCAATA+GGG - chr2_2:66545882-66545901 None:intergenic 35.0%
AACAATGATGCAAGACCAAT+AGG - chr2_2:66545883-66545902 None:intergenic 35.0%
! CTTGCATCATTGTTTTCATC+AGG + chr2_2:66545889-66545908 Msa0266120:CDS 35.0%
! ATCATTGTTTTCATCAGGGA+AGG + chr2_2:66545894-66545913 Msa0266120:CDS 35.0%
AGCTGGTAGTAGATAAAAAC+AGG - chr2_2:66546235-66546254 None:intergenic 35.0%
AACACTGAAAATGTGCATAC+CGG - chr2_2:66546282-66546301 None:intergenic 35.0%
GTGTTATCAATTACGGATCA+CGG + chr2_2:66546297-66546316 Msa0266120:intron 35.0%
GTAGAAATGATAAGCAGTTG+TGG + chr2_2:66546619-66546638 Msa0266120:CDS 35.0%
! TTTCCTTCTGTTTTGTCTAC+TGG - chr2_2:66546681-66546700 None:intergenic 35.0%
AGTAGACAAAACAGAAGGAA+AGG + chr2_2:66546680-66546699 Msa0266120:CDS 35.0%
!! CCTCCACTCTGAAAATTTTT+AGG - chr2_2:66546852-66546871 None:intergenic 35.0%
! CCTAAAAATTTTCAGAGTGG+AGG + chr2_2:66546849-66546868 Msa0266120:CDS 35.0%
TTATCCAAATAGGGACTTAC+AGG - chr2_2:66546909-66546928 None:intergenic 35.0%
AACAAGAGGATCTGATTGTT+TGG + chr2_2:66547227-66547246 Msa0266120:CDS 35.0%
!! CCATACAGTTTTCTGAAAGT+TGG - chr2_2:66547271-66547290 None:intergenic 35.0%
CCAACTTTCAGAAAACTGTA+TGG + chr2_2:66547268-66547287 Msa0266120:CDS 35.0%
TACAACACATACGAGTTTCA+AGG + chr2_2:66547349-66547368 Msa0266120:CDS 35.0%
! TGGTTCTATCAACTACAACT+TGG + chr2_2:66547383-66547402 Msa0266120:CDS 35.0%
CTATCAACTACAACTTGGAT+TGG + chr2_2:66547388-66547407 Msa0266120:CDS 35.0%
TGGTGGGAAAAATAGATTCT+TGG + chr2_2:66547408-66547427 Msa0266120:CDS 35.0%
GGTGGGAAAAATAGATTCTT+GGG + chr2_2:66547409-66547428 Msa0266120:CDS 35.0%
GTGGGAAAAATAGATTCTTG+GGG + chr2_2:66547410-66547429 Msa0266120:CDS 35.0%
TTATCATGGAACAGAAATCC+AGG + chr2_2:66547812-66547831 Msa0266120:CDS 35.0%
TATCATGGAACAGAAATCCA+GGG + chr2_2:66547813-66547832 Msa0266120:CDS 35.0%
!!! AGACATCATTTTAAGATCCC+TGG - chr2_2:66547833-66547852 None:intergenic 35.0%
TATACACTCATGTTCCATGT+TGG - chr2_2:66547918-66547937 None:intergenic 35.0%
! GGAGAATAACTGTAATGGAG+TGG - chr2_2:66545118-66545137 None:intergenic 40.0%
CGGAGCCTGTATTAAAATCT+TGG + chr2_2:66545443-66545462 Msa0266120:intron 40.0%
! CTTGGAAAATTTAGGGCTTG+AGG + chr2_2:66545461-66545480 Msa0266120:intron 40.0%
! GTTAGAATTGGTTTCCATGC+AGG - chr2_2:66545583-66545602 None:intergenic 40.0%
TGGAAACCAATTCTAACACC+TGG + chr2_2:66545586-66545605 Msa0266120:CDS 40.0%
AACCAATTCTAACACCTGGA+TGG + chr2_2:66545590-66545609 Msa0266120:CDS 40.0%
ACCAATTCTAACACCTGGAT+GGG + chr2_2:66545591-66545610 Msa0266120:CDS 40.0%
GTTGCATATTATACCCATCC+AGG - chr2_2:66545607-66545626 None:intergenic 40.0%
AGAAATACTAATGCAGGTGG+TGG + chr2_2:66545991-66546010 Msa0266120:intron 40.0%
ACTGCATCTTTAGCATCAGA+GGG - chr2_2:66546052-66546071 None:intergenic 40.0%
AACTGCATCTTTAGCATCAG+AGG - chr2_2:66546053-66546072 None:intergenic 40.0%
TCATTGAAAATCGTGCTGTG+AGG - chr2_2:66546478-66546497 None:intergenic 40.0%
! TTTTGTCTACTGGATCACAG+TGG - chr2_2:66546671-66546690 None:intergenic 40.0%
GATCCAGTAGACAAAACAGA+AGG + chr2_2:66546675-66546694 Msa0266120:CDS 40.0%
TGAACATACTCCATGCAATG+AGG - chr2_2:66546725-66546744 None:intergenic 40.0%
TTTCAGAGTGGAGGTTTGAT+TGG + chr2_2:66546858-66546877 Msa0266120:CDS 40.0%
CATACCTGTAAGTCCCTATT+TGG + chr2_2:66546902-66546921 Msa0266120:intron 40.0%
TGACCGTTTGAAAGAGCTTA+TGG - chr2_2:66547098-66547117 None:intergenic 40.0%
ACACATACGAGTTTCAAGGT+AGG + chr2_2:66547353-66547372 Msa0266120:CDS 40.0%
GTTTCAAGGTAGGAAGAAGT+TGG + chr2_2:66547363-66547382 Msa0266120:CDS 40.0%
! TCAACTACAACTTGGATTGG+TGG + chr2_2:66547391-66547410 Msa0266120:CDS 40.0%
!! CAACTACAACTTGGATTGGT+GGG + chr2_2:66547392-66547411 Msa0266120:CDS 40.0%
!! ATTGCATACCTTGTTGTTGG+TGG + chr2_2:66547433-66547452 Msa0266120:CDS 40.0%
CTATCCTTGTTCTGTGCTAT+AGG + chr2_2:66547457-66547476 Msa0266120:CDS 40.0%
GAATCCTATAGCACAGAACA+AGG - chr2_2:66547464-66547483 None:intergenic 40.0%
TTCTGTATGTGATCAAGCCA+AGG + chr2_2:66547488-66547507 Msa0266120:CDS 40.0%
ATGTGATCAAGCCAAGGTAA+AGG + chr2_2:66547494-66547513 Msa0266120:intron 40.0%
CTGTTCCATGATAAGTAGGA+TGG - chr2_2:66547806-66547825 None:intergenic 40.0%
AGTTCTTTGTGTGACCAACA+TGG + chr2_2:66547901-66547920 Msa0266120:three_prime_UTR 40.0%
GTGAAAGATCGCAACCATGA+TGG + chr2_2:66545199-66545218 Msa0266120:exon 45.0%
TACAGGCTCCGTAAATCACA+AGG - chr2_2:66545434-66545453 None:intergenic 45.0%
ACCCATCCAGGTGTTAGAAT+TGG - chr2_2:66545595-66545614 None:intergenic 45.0%
TGATATTGTCAAACTCGCCG+TGG - chr2_2:66545660-66545679 None:intergenic 45.0%
ACAAGACTTGCACCCACAAA+TGG + chr2_2:66546098-66546117 Msa0266120:CDS 45.0%
TTGTGGAGAAAGTCAGCTGA+AGG + chr2_2:66546636-66546655 Msa0266120:CDS 45.0%
TGTGGAGAAAGTCAGCTGAA+GGG + chr2_2:66546637-66546656 Msa0266120:CDS 45.0%
AAGGAGCCAATTGTTCCTTG+TGG + chr2_2:66546699-66546718 Msa0266120:CDS 45.0%
ATGAGGCCACAAGGAACAAT+TGG - chr2_2:66546708-66546727 None:intergenic 45.0%
GCATCAGTTGAGTGAACAAG+AGG + chr2_2:66547213-66547232 Msa0266120:intron 45.0%
! GGGATTGCATACCTTGTTGT+TGG + chr2_2:66547430-66547449 Msa0266120:CDS 45.0%
AGGATAGTCCACCAACAACA+AGG - chr2_2:66547444-66547463 None:intergenic 45.0%
! TGCTCTTTTTGCAGACCTCT+TGG + chr2_2:66547776-66547795 Msa0266120:intron 45.0%
! GCTCTTTTTGCAGACCTCTT+GGG + chr2_2:66547777-66547796 Msa0266120:intron 45.0%
! CTCTTTTTGCAGACCTCTTG+GGG + chr2_2:66547778-66547797 Msa0266120:intron 45.0%
GGGATCCATCCTACTTATCA+TGG + chr2_2:66547798-66547817 Msa0266120:CDS 45.0%
!!! TGTTTTTTTTTTTTTTTTTT+TGG - chr2_2:66545400-66545419 None:intergenic 5.0%
CACAGCAAGAACTACCTGCA+TGG + chr2_2:66545566-66545585 Msa0266120:CDS 50.0%
!! GTGGGTGCAAGTCTTGTTAG+TGG - chr2_2:66546095-66546114 None:intergenic 50.0%
TTCCTTGTGGCCTCATTGCA+TGG + chr2_2:66546712-66546731 Msa0266120:CDS 50.0%
CAGAGTGGAGGTTTGATTGG+AGG + chr2_2:66546861-66546880 Msa0266120:CDS 50.0%
AAGTAGGATGGATCCCCAAG+AGG - chr2_2:66547794-66547813 None:intergenic 50.0%
CTCCATGCAATGAGGCCACA+AGG - chr2_2:66546717-66546736 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 66545007 66547999 66545007 ID=Msa0266120;Name=Msa0266120
chr2_2 mRNA 66545007 66547999 66545007 ID=Msa0266120-mRNA-1;Parent=Msa0266120;Name=Msa0266120-mRNA-1;_AED=0.06;_eAED=0.06;_QI=208|1|1|1|1|1|8|152|347
chr2_2 exon 66545007 66545287 66545007 ID=Msa0266120-mRNA-1:exon:21106;Parent=Msa0266120-mRNA-1
chr2_2 exon 66545554 66545612 66545554 ID=Msa0266120-mRNA-1:exon:21107;Parent=Msa0266120-mRNA-1
chr2_2 exon 66545841 66545915 66545841 ID=Msa0266120-mRNA-1:exon:21108;Parent=Msa0266120-mRNA-1
chr2_2 exon 66546007 66546123 66546007 ID=Msa0266120-mRNA-1:exon:21109;Parent=Msa0266120-mRNA-1
chr2_2 exon 66546211 66546281 66546211 ID=Msa0266120-mRNA-1:exon:21110;Parent=Msa0266120-mRNA-1
chr2_2 exon 66546608 66546908 66546608 ID=Msa0266120-mRNA-1:exon:21111;Parent=Msa0266120-mRNA-1
chr2_2 exon 66547220 66547509 66547220 ID=Msa0266120-mRNA-1:exon:21112;Parent=Msa0266120-mRNA-1
chr2_2 exon 66547790 66547999 66547790 ID=Msa0266120-mRNA-1:exon:21113;Parent=Msa0266120-mRNA-1
chr2_2 five_prime_UTR 66545007 66545214 66545007 ID=Msa0266120-mRNA-1:five_prime_utr;Parent=Msa0266120-mRNA-1
chr2_2 CDS 66545215 66545287 66545215 ID=Msa0266120-mRNA-1:cds;Parent=Msa0266120-mRNA-1
chr2_2 CDS 66545554 66545612 66545554 ID=Msa0266120-mRNA-1:cds;Parent=Msa0266120-mRNA-1
chr2_2 CDS 66545841 66545915 66545841 ID=Msa0266120-mRNA-1:cds;Parent=Msa0266120-mRNA-1
chr2_2 CDS 66546007 66546123 66546007 ID=Msa0266120-mRNA-1:cds;Parent=Msa0266120-mRNA-1
chr2_2 CDS 66546211 66546281 66546211 ID=Msa0266120-mRNA-1:cds;Parent=Msa0266120-mRNA-1
chr2_2 CDS 66546608 66546908 66546608 ID=Msa0266120-mRNA-1:cds;Parent=Msa0266120-mRNA-1
chr2_2 CDS 66547220 66547509 66547220 ID=Msa0266120-mRNA-1:cds;Parent=Msa0266120-mRNA-1
chr2_2 CDS 66547790 66547847 66547790 ID=Msa0266120-mRNA-1:cds;Parent=Msa0266120-mRNA-1
chr2_2 three_prime_UTR 66547848 66547999 66547848 ID=Msa0266120-mRNA-1:three_prime_utr;Parent=Msa0266120-mRNA-1
Gene Sequence

>Msa0266120

ATGATGGATATGACTTCATCAAAAGATGGACAATCTCCTCCCAATTCAAAGAAAACTTCAAAGAAACCTAAATATTCAAGATTCTCACAGCAAGAACTACCTGCATGGAAACCAATTCTAACACCTGGATGGGTGATTGCCACATTTACTGCAATTGGAATCATCTTTATCCCTATTGGTCTTGCATCATTGTTTTCATCAGGGAAGGTGGTGGAAGCTGAATTCAGATATGATGAAACGTGTCTTTCTCCCTCTGATGCTAAAGATGCAGTTGCATATATTAAAAGTGATACCACTAACAAGACTTGCACCCACAAATGGATTGTTGAGCAAAAAATGCAAGCTCCTGTTTTTATCTACTACCAGCTTGATAATTACTATCAAAATCATCGCCGATATGTTAAGAGTAGAAATGATAAGCAGTTGTGGAGAAAGTCAGCTGAAGGGCAAACAGACCACTGTGATCCAGTAGACAAAACAGAAGGAAAGGAGCCAATTGTTCCTTGTGGCCTCATTGCATGGAGTATGTTCAATGACACCTACAAATTTTCAATGGACAACAAGGATTTAACTGTCAACAAAAAGAACATAGCATGGGGAAGTGACAAAAATTCTAAATTTGGTCGTGAAGTTTATCCTAAAAATTTTCAGAGTGGAGGTTTGATTGGAGGTGCAAAACTCAATGAAAGCATACCTTTGAGTGAACAAGAGGATCTGATTGTTTGGATGAGAACAGCAGCATTACCAACTTTCAGAAAACTGTATGGGAAGATAGAGTCTGATCTTGAAGTTAATGATGAGATAGAAATACTAATTCAGAACAATTACAACACATACGAGTTTCAAGGTAGGAAGAAGTTGGTTCTATCAACTACAACTTGGATTGGTGGGAAAAATAGATTCTTGGGGATTGCATACCTTGTTGTTGGTGGACTATCCTTGTTCTGTGCTATAGGATTCATTCTTCTGTATGTGATCAAGCCAAGACCTCTTGGGGATCCATCCTACTTATCATGGAACAGAAATCCAGGGATCTTAAAATGA

Protein sequence

>Msa0266120

MMDMTSSKDGQSPPNSKKTSKKPKYSRFSQQELPAWKPILTPGWVIATFTAIGIIFIPIGLASLFSSGKVVEAEFRYDETCLSPSDAKDAVAYIKSDTTNKTCTHKWIVEQKMQAPVFIYYQLDNYYQNHRRYVKSRNDKQLWRKSAEGQTDHCDPVDKTEGKEPIVPCGLIAWSMFNDTYKFSMDNKDLTVNKKNIAWGSDKNSKFGREVYPKNFQSGGLIGGAKLNESIPLSEQEDLIVWMRTAALPTFRKLYGKIESDLEVNDEIEILIQNNYNTYEFQGRKKLVLSTTTWIGGKNRFLGIAYLVVGGLSLFCAIGFILLYVIKPRPLGDPSYLSWNRNPGILK*