AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0721650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0721650 MtrunA17_Chr5g0412871 98.753 481 6 0 1 481 1 481 0.0 982
Msa0721650 MtrunA17_Chr8g0345201 49.378 482 233 3 3 474 44 524 2.03e-166 480
Msa0721650 MtrunA17_Chr6g0475681 24.868 378 250 14 93 463 173 523 3.91e-22 99.4
Msa0721650 MtrunA17_Chr8g0387481 26.012 346 225 14 100 438 87 408 5.19e-19 89.7
Msa0721650 MtrunA17_Chr6g0488041 25.784 287 191 11 94 376 84 352 7.63e-19 89.0
Msa0721650 MtrunA17_Chr2g0324801 22.933 375 246 11 74 440 17 356 3.42e-18 86.3
Msa0721650 MtrunA17_Chr7g0248681 26.172 256 174 9 100 352 86 329 3.80e-18 87.0
Msa0721650 MtrunA17_Chr3g0135251 23.077 377 254 16 100 466 78 428 1.19e-17 85.5
Msa0721650 MtrunA17_Chr8g0389311 25.974 308 207 13 103 407 83 372 2.29e-17 84.3
Msa0721650 MtrunA17_Chr8g0389321 25.974 308 207 13 103 407 83 372 2.29e-17 84.3
Msa0721650 MtrunA17_Chr8g0360241 22.812 377 248 14 72 440 47 388 7.76e-17 82.4
Msa0721650 MtrunA17_Chr5g0400831 27.723 202 132 7 100 291 79 276 2.36e-16 81.3
Msa0721650 MtrunA17_Chr4g0054371 27.119 177 123 5 100 272 79 253 1.54e-15 79.0
Msa0721650 MtrunA17_Chr8g0348351 24.859 177 128 4 100 273 86 260 3.44e-15 77.8
Msa0721650 MtrunA17_Chr5g0398431 25.874 143 103 3 129 270 178 318 1.21e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0721650 AT1G70580.4 85.239 481 71 0 1 481 1 481 0.0 870
Msa0721650 AT1G70580.2 85.239 481 71 0 1 481 1 481 0.0 870
Msa0721650 AT1G70580.3 85.239 481 71 0 1 481 1 481 0.0 870
Msa0721650 AT1G70580.1 85.239 481 71 0 1 481 1 481 0.0 870
Msa0721650 AT1G23310.1 84.615 481 74 0 1 481 1 481 0.0 865
Msa0721650 AT1G23310.2 85.194 439 65 0 1 439 1 439 0.0 792
Msa0721650 AT1G72330.1 49.582 478 230 3 5 472 62 538 2.30e-169 488
Msa0721650 AT1G72330.3 48.269 491 230 4 5 472 62 551 8.83e-166 479
Msa0721650 AT1G17290.1 49.792 480 230 3 5 474 65 543 9.96e-165 476
Msa0721650 AT1G72330.2 49.570 349 165 3 5 343 62 409 2.46e-116 349
Msa0721650 AT5G51690.2 23.037 382 258 14 95 468 17 370 2.32e-20 93.2
Msa0721650 AT2G20610.1 24.650 357 227 14 97 447 98 418 3.07e-20 93.6
Msa0721650 AT5G51690.1 23.037 382 258 14 95 468 140 493 3.11e-20 94.0
Msa0721650 AT2G24850.1 23.810 378 243 13 97 466 81 421 6.53e-20 92.4
Msa0721650 AT5G36160.1 24.938 401 246 18 84 476 66 419 1.02e-19 91.7
Msa0721650 AT2G20610.2 24.340 341 219 13 97 431 98 405 7.71e-19 89.4
Msa0721650 AT1G62960.1 24.084 382 254 17 99 471 202 556 1.09e-18 89.4
Msa0721650 AT4G11280.1 26.182 275 186 9 100 371 90 350 1.28e-17 85.9
Msa0721650 AT4G26200.1 25.703 249 175 7 47 291 43 285 1.09e-16 82.8
Msa0721650 AT4G28420.2 22.886 402 267 15 69 465 64 427 7.66e-16 80.1
Msa0721650 AT4G28410.1 22.835 381 239 12 74 440 77 416 6.09e-15 77.4
Msa0721650 AT4G28420.1 24.583 240 164 6 69 308 64 286 2.51e-14 75.1
Msa0721650 AT4G08040.1 22.581 372 261 13 100 467 77 425 3.42e-14 75.1
Msa0721650 AT4G28410.2 22.400 375 236 12 74 434 77 410 5.63e-14 74.3
Msa0721650 AT5G53970.1 22.250 400 266 14 72 465 40 400 7.99e-14 73.6
Msa0721650 AT5G65800.1 28.788 198 131 6 100 291 79 272 1.09e-13 73.6
Msa0721650 AT3G49700.1 28.283 198 132 6 100 291 79 272 1.34e-13 73.2
Msa0721650 AT1G01480.1 22.384 344 233 15 100 434 87 405 1.91e-13 72.8
Msa0721650 AT4G37770.1 26.705 176 124 4 100 272 79 252 5.70e-13 71.2
Msa0721650 AT3G61510.1 24.103 195 138 6 82 273 70 257 1.68e-11 66.6
Msa0721650 AT1G01480.2 22.910 323 216 15 129 443 12 309 1.74e-11 66.2

Find 153 sgRNAs with CRISPR-Local

Find 487 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGTGTCAACCTTATTATT+TGG 0.141804 5_1:-18559013 Msa0721650:three_prime_UTR
TACAATGTCCTTACACAATA+TGG 0.143358 5_1:+18558905 None:intergenic
TGGCCTAGCTTTAGGCTTAA+AGG 0.222985 5_1:+18567165 None:intergenic
ACTGTTCCTGGCTCAGGATT+TGG 0.236800 5_1:-18560436 Msa0721650:CDS
ATTAATCGACTCATAGTCTA+AGG 0.247563 5_1:+18565705 None:intergenic
TCTGCAACAATTGCTCTTCT+TGG 0.268402 5_1:-18562874 Msa0721650:CDS
TCATTCACATCTGGTGGTTT+AGG 0.269628 5_1:-18564700 Msa0721650:intron
GGAAGAAATGCCTGCTATTA+TGG 0.271511 5_1:-18559453 Msa0721650:CDS
AGCTGGACTTCCTTGCTTAA+AGG 0.291078 5_1:+18562351 None:intergenic
AATATTTGTGCTGGAACATT+TGG 0.293542 5_1:+18561348 None:intergenic
TTAGCAGTCTCTAAAGCTTT+TGG 0.293897 5_1:+18560523 None:intergenic
TTACTACTGTCTCAAGCTTT+TGG 0.300237 5_1:-18560476 Msa0721650:CDS
CTGCAACAATTGCTCTTCTT+GGG 0.302273 5_1:-18562873 Msa0721650:CDS
TTTCTTACGACCAATTTGTT+AGG 0.302745 5_1:-18561181 Msa0721650:CDS
CATTGACCAGTAGGGTTTCC+AGG 0.313107 5_1:+18562609 None:intergenic
TCGTCATCTCCCAAATAATA+AGG 0.321063 5_1:+18559003 None:intergenic
AAAGTTCAATGATGATTTCA+TGG 0.322465 5_1:-18559420 Msa0721650:CDS
AAGTGTCAACCTTATTATTT+GGG 0.322583 5_1:-18559012 Msa0721650:three_prime_UTR
TGTTGGAAACCCACATGCTT+TGG 0.325099 5_1:-18565021 Msa0721650:CDS
CCTTGAAGAGACAGCAAATT+GGG 0.329460 5_1:-18562830 Msa0721650:CDS
ACCCTTCATTAGTGCCAAAA+AGG 0.337700 5_1:-18562481 Msa0721650:intron
CCCAATTTGCTGTCTCTTCA+AGG 0.337819 5_1:+18562830 None:intergenic
GTTAGAGAGGCTCGCTATAA+AGG 0.359225 5_1:-18562778 Msa0721650:CDS
GCTGTCTCTTCAAGGTAGTA+TGG 0.360994 5_1:+18562838 None:intergenic
ACCTTGAAGAGACAGCAAAT+TGG 0.370668 5_1:-18562831 Msa0721650:CDS
AAGATGATTGTTTGCCATCA+TGG 0.374038 5_1:+18559218 None:intergenic
GCTTCAGAAGGAGGGCAAAA+AGG 0.374053 5_1:-18565623 Msa0721650:intron
GGCCTAGCTTTAGGCTTAAA+GGG 0.384379 5_1:+18567166 None:intergenic
GAAGAAAATTTAGTCTTGCT+TGG 0.393995 5_1:-18562543 Msa0721650:CDS
GTTGGAAACCCACATGCTTT+GGG 0.394384 5_1:-18565020 Msa0721650:CDS
ATTACCTCTCCCTAACAAAT+TGG 0.395849 5_1:+18561171 None:intergenic
GTAATATAGTTGTCCTCAAA+TGG 0.400999 5_1:+18559483 None:intergenic
AGCTTTAGAGACTGCTAAAC+AGG 0.401858 5_1:-18560518 Msa0721650:CDS
CAGATTATATTCACTAATGT+TGG 0.402510 5_1:-18565038 Msa0721650:CDS
ACTGGCATATCCACTGTTCC+TGG 0.402775 5_1:-18560448 Msa0721650:CDS
ACAGGTTGTTGCTTTGTGCC+AGG 0.403167 5_1:-18564800 Msa0721650:intron
TTCTTCTATCAATCAATCTA+AGG 0.403616 5_1:-18566907 Msa0721650:intron
GCTCTTGCAATTGCATCAGC+TGG 0.405463 5_1:+18564736 None:intergenic
ATATCCACTGTTCCTGGCTC+AGG 0.412282 5_1:-18560442 Msa0721650:CDS
TTACCAGACGAATATATATC+AGG 0.421157 5_1:-18562511 Msa0721650:CDS
TCGGTGTCAAAAGGGTATTT+TGG 0.422234 5_1:-18562315 Msa0721650:CDS
GACTCATAGTCTAAGGGCTT+TGG 0.425588 5_1:+18565712 None:intergenic
AGTATAATTATTTATTTATG+TGG 0.425635 5_1:+18567033 None:intergenic
GTAAGAAATATCTCCAGGTT+TGG 0.432125 5_1:+18561196 None:intergenic
TTCTGTCCAAATCCTGAGCC+AGG 0.442611 5_1:+18560430 None:intergenic
CAGTATCTCTCATTCACATC+TGG 0.451594 5_1:-18564709 Msa0721650:CDS
TTCTTACGACCAATTTGTTA+GGG 0.451783 5_1:-18561180 Msa0721650:CDS
GCCACTTCCTTCCTCACTGC+CGG 0.454290 5_1:+18563264 None:intergenic
TAAGAAATATCTCCAGGTTT+GGG 0.454322 5_1:+18561197 None:intergenic
CAGAGTAAAGTGGGTATTGT+GGG 0.468416 5_1:+18562893 None:intergenic
TCATCAGAGGCGAAGGAGAT+GGG 0.477338 5_1:-18563016 Msa0721650:CDS
CTCTTAAATTCTCTTCACTA+AGG 0.478036 5_1:+18562586 None:intergenic
GCAGGCATTTCTTCCTCAGC+TGG 0.482109 5_1:+18559461 None:intergenic
TTGAAACTATCCATAATAGC+AGG 0.483460 5_1:+18559443 None:intergenic
TGACTCCACTTAGTGGGATA+AGG 0.485347 5_1:-18559080 Msa0721650:three_prime_UTR
ACCACTGACCTTCCCTCGCC+AGG 0.489247 5_1:-18564991 Msa0721650:intron
CATCCTGATATATATTCGTC+TGG 0.490719 5_1:+18562508 None:intergenic
CAGAATACCCATATTGTGTA+AGG 0.490881 5_1:-18558913 Msa0721650:three_prime_UTR
GGCACAACATATAATAATAC+AGG 0.493819 5_1:+18559239 None:intergenic
TGGTCGTAAGAAATATCTCC+AGG 0.495347 5_1:+18561191 None:intergenic
ATAAATCCTGGAAACCCTAC+TGG 0.499659 5_1:-18562615 Msa0721650:CDS
TATTATATGTTGTGCCATGA+TGG 0.503878 5_1:-18559232 Msa0721650:three_prime_UTR
TCACTAAGGCATTGACCAGT+AGG 0.504159 5_1:+18562600 None:intergenic
ATGTAGCTGACTCCACTTAG+TGG 0.505129 5_1:-18559087 Msa0721650:three_prime_UTR
TGCAACAATTGCTCTTCTTG+GGG 0.505611 5_1:-18562872 Msa0721650:CDS
TAAAGTGGGTATTGTGGGAC+TGG 0.505840 5_1:+18562898 None:intergenic
ACAATGTCCTTACACAATAT+GGG 0.506319 5_1:+18558906 None:intergenic
GGGAATAGCAGTCCAACGTT+AGG 0.507835 5_1:+18564757 None:intergenic
TACACTTGTTGTTTATCACT+CGG 0.509208 5_1:-18566933 Msa0721650:five_prime_UTR
GTTGTTTGCAATTTCACAGA+AGG 0.509314 5_1:-18560693 Msa0721650:intron
TTTAGTCTTGCTTGGAGATG+AGG 0.510094 5_1:-18562535 Msa0721650:CDS
ATTATTTATTTATGTGGCAG+TGG 0.510548 5_1:+18567039 None:intergenic
TTTGCCCTCCTTCTGAAGCT+CGG 0.511768 5_1:+18565627 None:intergenic
TCAGGATTTGGACAGAAAGA+AGG 0.514334 5_1:-18560424 Msa0721650:CDS
ATCATCAGAGGCGAAGGAGA+TGG 0.516030 5_1:-18563017 Msa0721650:CDS
CTGATGGATTCAACAGCTGC+AGG 0.516393 5_1:-18560719 Msa0721650:CDS
GGTTTCTGTCCCAAAGCATG+TGG 0.516790 5_1:+18565011 None:intergenic
ACGACCAATTTGTTAGGGAG+AGG 0.520512 5_1:-18561175 Msa0721650:intron
GCAATGGTGATCATAAATCC+TGG 0.522716 5_1:-18562627 Msa0721650:CDS
GTCAATAGATAACAAGGCAT+TGG 0.525143 5_1:+18567193 None:intergenic
TATTTGAGGGAATGAATACA+TGG 0.526126 5_1:+18560555 None:intergenic
ATGATCAATCCACCCAAACC+TGG 0.527405 5_1:-18561209 Msa0721650:CDS
ACGACCACAGAGGTTATTCA+AGG 0.533269 5_1:-18559388 Msa0721650:CDS
CACTAAGGCATTGACCAGTA+GGG 0.535793 5_1:+18562601 None:intergenic
AGGCACTCCGGCAGTGAGGA+AGG 0.536932 5_1:-18563271 Msa0721650:CDS
GATTAATGAAAACGTGAAGA+AGG 0.538917 5_1:-18565689 Msa0721650:CDS
CTCTTGCAATTGCATCAGCT+GGG 0.539804 5_1:+18564737 None:intergenic
TAACTCACAAATATTTGTGC+TGG 0.540144 5_1:+18561339 None:intergenic
GCAATTGTTGCAGAGTAAAG+TGG 0.540373 5_1:+18562883 None:intergenic
ACTAAGTGGAGTCAGCTACA+TGG 0.545846 5_1:+18559089 None:intergenic
ACAAACCTCTGGAGGAATGT+TGG 0.548308 5_1:+18562257 None:intergenic
CAAAGCCTTATCCCACTAAG+TGG 0.550276 5_1:+18559075 None:intergenic
TCATAGTCTAAGGGCTTTGG+TGG 0.550561 5_1:+18565715 None:intergenic
TCAGTAAGATAGATGAACTC+TGG 0.550763 5_1:+18563077 None:intergenic
TATCTCTCATTCACATCTGG+TGG 0.552635 5_1:-18564706 Msa0721650:CDS
TCTTACTGACGGTGCGAGCA+AGG 0.554895 5_1:-18563063 Msa0721650:CDS
TTAGAGACTGCTAAACAGGC+TGG 0.555028 5_1:-18560514 Msa0721650:CDS
AGAGCAAGGATCATGACTGA+TGG 0.558706 5_1:-18560735 Msa0721650:CDS
CCGAGTGAAAAGAAACAAGC+TGG 0.564033 5_1:+18562334 None:intergenic
TCCGGCAGTGAGGAAGGAAG+TGG 0.564178 5_1:-18563265 Msa0721650:CDS
GTGCTGAACCTGGCGAGGGA+AGG 0.564545 5_1:+18564983 None:intergenic
GAAATATCTCCAGGTTTGGG+TGG 0.567289 5_1:+18561200 None:intergenic
TTAGGATCATCAAGTAGGAA+TGG 0.568415 5_1:+18564775 None:intergenic
GACTTGTAAAACACAGGAGG+AGG 0.569552 5_1:+18559042 None:intergenic
CAACGTTAGGATCATCAAGT+AGG 0.572461 5_1:+18564770 None:intergenic
GAGTTTATACAGAGGCGTGA+TGG 0.576593 5_1:-18563240 Msa0721650:CDS
GCAACAATTGCTCTTCTTGG+GGG 0.578349 5_1:-18562871 Msa0721650:CDS
AGCTACCGAGCTTCAGAAGG+AGG 0.578963 5_1:-18565632 Msa0721650:CDS
AATACTATCATCAGAGGCGA+AGG 0.581318 5_1:-18563023 Msa0721650:CDS
CTACTTGATGATCCTAACGT+TGG 0.583949 5_1:-18564769 Msa0721650:CDS
TCTTAGGACTTGTAAAACAC+AGG 0.590391 5_1:+18559036 None:intergenic
TGGACTTCCTTGCTTAAAGG+TGG 0.590832 5_1:+18562354 None:intergenic
TTAATCGACTCATAGTCTAA+GGG 0.594837 5_1:+18565706 None:intergenic
TCGAGCTACCGAGCTTCAGA+AGG 0.594916 5_1:-18565635 Msa0721650:CDS
CAATTGTTGCAGAGTAAAGT+GGG 0.595072 5_1:+18562884 None:intergenic
GTTTCTGTCCCAAAGCATGT+GGG 0.598610 5_1:+18565012 None:intergenic
CAGGATTTGGACAGAAAGAA+GGG 0.599726 5_1:-18560423 Msa0721650:intron
TTGTCAGTGATATATAGAGA+AGG 0.600842 5_1:+18559291 None:intergenic
TAGTGATTCTCGAGGCACTC+CGG 0.602044 5_1:-18563283 Msa0721650:CDS
GGTATTGTCAATAGATAACA+AGG 0.606528 5_1:+18567187 None:intergenic
TAGTGAAGAGAATTTAAGAG+AGG 0.607939 5_1:-18562583 Msa0721650:CDS
CATCAAGTAGGAATGGAGCC+TGG 0.610744 5_1:+18564782 None:intergenic
ACCTGGCGAGGGAAGGTCAG+TGG 0.613068 5_1:+18564990 None:intergenic
TGTAGCTGACTCCACTTAGT+GGG 0.616710 5_1:-18559086 Msa0721650:three_prime_UTR
CATCAGAGGCGAAGGAGATG+GGG 0.619328 5_1:-18563015 Msa0721650:intron
AAACCATATTTGTAAAACAC+AGG 0.621428 5_1:+18559140 None:intergenic
AAATCCTGAGCCAGGAACAG+TGG 0.624773 5_1:+18560438 None:intergenic
TGAAGGAGACAAACCTCTGG+AGG 0.624969 5_1:+18562249 None:intergenic
TCTGAAGCTCGGTAGCTCGA+AGG 0.628218 5_1:+18565638 None:intergenic
AATCACTAAGAAGAAGAGCA+AGG 0.628553 5_1:-18560749 Msa0721650:CDS
GACAACTATATTACCAGCTG+AGG 0.628816 5_1:-18559474 Msa0721650:CDS
GCTACCGAGCTTCAGAAGGA+GGG 0.629811 5_1:-18565631 Msa0721650:CDS
ACTTCGAAAATCAGTTAGAG+AGG 0.636186 5_1:-18562791 Msa0721650:CDS
AATGACCAACATTCCTCCAG+AGG 0.636754 5_1:-18562262 Msa0721650:intron
TATGGGGCCACCTTTAAGCA+AGG 0.637447 5_1:-18562361 Msa0721650:CDS
GAGTTCATCTATCTTACTGA+CGG 0.641882 5_1:-18563074 Msa0721650:CDS
GCAGAGTAAAGTGGGTATTG+TGG 0.641947 5_1:+18562892 None:intergenic
CTTGAAGAGACAGCAAATTG+GGG 0.642303 5_1:-18562829 Msa0721650:CDS
ATATTAAATACTATCATCAG+AGG 0.642923 5_1:-18563029 Msa0721650:CDS
TACCCTTTAAGCCTAAAGCT+AGG 0.645737 5_1:-18567168 Msa0721650:five_prime_UTR
AGTTGTGCTGAACCTGGCGA+GGG 0.653433 5_1:+18564979 None:intergenic
AAGGCTCAGTATGCTGTCAG+AGG 0.653659 5_1:-18565670 Msa0721650:CDS
CTCGAGGCACTCCGGCAGTG+AGG 0.660921 5_1:-18563275 Msa0721650:CDS
TAGGACTTGTAAAACACAGG+AGG 0.661000 5_1:+18559039 None:intergenic
AGGAACAGTGGATATGCCAG+TGG 0.664887 5_1:+18560450 None:intergenic
AAGTGGCAGAGTTTATACAG+AGG 0.671960 5_1:-18563248 Msa0721650:CDS
TAGTTGTGCTGAACCTGGCG+AGG 0.681080 5_1:+18564978 None:intergenic
GGTGAATGTGGACAACGTGG+TGG 0.701411 5_1:-18562294 Msa0721650:CDS
GGTGCTTATAGTGATTCTCG+AGG 0.716171 5_1:-18563291 Msa0721650:CDS
AGAGGCGTGATGGTTATCCG+AGG 0.725631 5_1:-18563230 Msa0721650:intron
TTTGGTGAATGTGGACAACG+TGG 0.726588 5_1:-18562297 Msa0721650:CDS
ACAACCTTGAATAACCTCTG+TGG 0.736073 5_1:+18559384 None:intergenic
GAACAATATGACGACCACAG+AGG 0.761862 5_1:-18559398 Msa0721650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTATAATTATTTATTTATG+TGG + chr5_1:18559214-18559233 None:intergenic 10.0%
!!! TTATAAATTGAAATTTTTTC+AGG - chr5_1:18563589-18563608 Msa0721650:intron 10.0%
!! AATTTAAAAAAAAAAAATGG+GGG + chr5_1:18564507-18564526 None:intergenic 10.0%
!! CAATTTAAAAAAAAAAAATG+GGG + chr5_1:18564508-18564527 None:intergenic 10.0%
!! CCAATTTAAAAAAAAAAAAT+GGG + chr5_1:18564509-18564528 None:intergenic 10.0%
!!! CCATTTTTTTTTTTTAAATT+GGG - chr5_1:18564507-18564526 Msa0721650:intron 10.0%
!! TTACAATTAAAATGAAAAAT+AGG + chr5_1:18566278-18566297 None:intergenic 10.0%
!!! TTTTGACTTTTGTTTTAATT+GGG - chr5_1:18559437-18559456 Msa0721650:CDS 15.0%
!!! AATAACTTGTTTTCAAATAT+TGG - chr5_1:18561183-18561202 Msa0721650:CDS 15.0%
!! AATTAGTAAAAGTAGAAATA+TGG + chr5_1:18561292-18561311 None:intergenic 15.0%
!! TCATATTACAAAAATTACAA+GGG + chr5_1:18561317-18561336 None:intergenic 15.0%
!! ATCATATTACAAAAATTACA+AGG + chr5_1:18561318-18561337 None:intergenic 15.0%
!! TCTAACAATTTAATTAAATG+TGG + chr5_1:18561355-18561374 None:intergenic 15.0%
!! ATTGTGTAAAGTAATTAATA+TGG + chr5_1:18562729-18562748 None:intergenic 15.0%
!!! CCCATTTTTTTTTTTTAAAT+TGG - chr5_1:18564506-18564525 Msa0721650:intron 15.0%
!! CCCAATTTAAAAAAAAAAAA+TGG + chr5_1:18564510-18564529 None:intergenic 15.0%
!!! ACATAAATTTATTTTTTGAC+AGG + chr5_1:18567077-18567096 None:intergenic 15.0%
!!! TTTAAACAGAATATCTTTTT+AGG - chr5_1:18567274-18567293 Msa0721650:five_prime_UTR 15.0%
!!! TATGTTTTAGATATGGTATT+TGG + chr5_1:18558943-18558962 None:intergenic 20.0%
!!! TTTGTTGTATGTTTTAGATA+TGG + chr5_1:18558950-18558969 None:intergenic 20.0%
!!! TTTAGCTATAAATTTCAAGT+GGG + chr5_1:18559408-18559427 None:intergenic 20.0%
!!! TTTTAGCTATAAATTTCAAG+TGG + chr5_1:18559409-18559428 None:intergenic 20.0%
!!! CTTTTGACTTTTGTTTTAAT+TGG - chr5_1:18559436-18559455 Msa0721650:CDS 20.0%
!!! TTTTCCTCTTTGAATTATTT+TGG - chr5_1:18560431-18560450 Msa0721650:CDS 20.0%
!! TATAATACACATTCAATGAA+AGG + chr5_1:18560745-18560764 None:intergenic 20.0%
!!! CAAGTTATTTTAACAGAAAA+TGG + chr5_1:18561172-18561191 None:intergenic 20.0%
!! CATATTACAAAAATTACAAG+GGG + chr5_1:18561316-18561335 None:intergenic 20.0%
!!! ATTTGTTGATTATTCTAATG+TGG - chr5_1:18561389-18561408 Msa0721650:CDS 20.0%
!! TATAACAATGAATTGACATA+TGG + chr5_1:18561610-18561629 None:intergenic 20.0%
!! TATAACAATGAATTGACATA+TGG + chr5_1:18561610-18561629 None:intergenic 20.0%
!! CAATTCATTGTTATATAATG+TGG - chr5_1:18561683-18561702 Msa0721650:intron 20.0%
!!! GAAAAAGTTTCTGAAAAATT+TGG - chr5_1:18561759-18561778 Msa0721650:intron 20.0%
!!! TTTTCATTAATTGAGTAATC+CGG - chr5_1:18561786-18561805 Msa0721650:intron 20.0%
!!! GTTTATTTTATCAGTGAAAA+TGG + chr5_1:18562070-18562089 None:intergenic 20.0%
!!! CAATCTATTTTCAAAATGTA+TGG + chr5_1:18562122-18562141 None:intergenic 20.0%
!! TCTCTCTATTACAATTAAAA+AGG - chr5_1:18562226-18562245 Msa0721650:intron 20.0%
!!! AAGTCTCATTTTTATTAGAA+TGG - chr5_1:18562408-18562427 Msa0721650:intron 20.0%
!!! ATTTATAAGATGTTTTTGCA+AGG + chr5_1:18563080-18563099 None:intergenic 20.0%
!! TTGCAAAAACATCTTATAAA+TGG - chr5_1:18563079-18563098 Msa0721650:CDS 20.0%
!! ATATTAAATACTATCATCAG+AGG - chr5_1:18563215-18563234 Msa0721650:intron 20.0%
!!! AATTTTTTATTGCCAGATTA+TGG - chr5_1:18563321-18563340 Msa0721650:intron 20.0%
!! AATAATGTCATATTCTTCAA+AGG + chr5_1:18563567-18563586 None:intergenic 20.0%
!!! TAGAAAGTATAGATTTTTCA+TGG - chr5_1:18564075-18564094 Msa0721650:intron 20.0%
!! TTAACTTAAATTTCAGTACA+AGG + chr5_1:18564224-18564243 None:intergenic 20.0%
!! TAATACAAGATGTAATCAAT+AGG - chr5_1:18564460-18564479 Msa0721650:intron 20.0%
!! CAAAATCAAAAAATTTCGTT+TGG - chr5_1:18565123-18565142 Msa0721650:intron 20.0%
!! GATAAAAGAAGAAAATAAAG+GGG + chr5_1:18565858-18565877 None:intergenic 20.0%
!! GGATAAAAGAAGAAAATAAA+GGG + chr5_1:18565859-18565878 None:intergenic 20.0%
!!! TTATCTTTTGCTATAGAAAT+AGG - chr5_1:18566130-18566149 Msa0721650:intron 20.0%
!!! ATATTTACTTGTGAAGTATT+AGG + chr5_1:18566228-18566247 None:intergenic 20.0%
!! TACTTCACAAGTAAATATTT+CGG - chr5_1:18566230-18566249 Msa0721650:intron 20.0%
!! TTTACTTGTGAAATATATCA+AGG + chr5_1:18566419-18566438 None:intergenic 20.0%
!! GGATTATTGAATTTTTGCAA+GGG + chr5_1:18559132-18559151 None:intergenic 25.0%
!! AGGATTATTGAATTTTTGCA+AGG + chr5_1:18559133-18559152 None:intergenic 25.0%
! ATTATTTATTTATGTGGCAG+TGG + chr5_1:18559208-18559227 None:intergenic 25.0%
! TTCTTCTATCAATCAATCTA+AGG - chr5_1:18559337-18559356 Msa0721650:three_prime_UTR 25.0%
! ACATCATACAAAACCAAAAA+CGG + chr5_1:18559491-18559510 None:intergenic 25.0%
!! ATGTGTTTTCTTCATGAATT+TGG - chr5_1:18559507-18559526 Msa0721650:intron 25.0%
!!! TAGTCCATAGTTTTAAATTG+CGG - chr5_1:18560181-18560200 Msa0721650:intron 25.0%
!! GTATAGTCAAATTTCTTTTC+TGG - chr5_1:18560643-18560662 Msa0721650:intron 25.0%
! ATGAAAGGATTTCAATGATA+AGG + chr5_1:18560730-18560749 None:intergenic 25.0%
!! TTGTATAGCTAATTTTTACG+TGG - chr5_1:18560926-18560945 Msa0721650:intron 25.0%
!! CTTTTAAGCAATCAAATCTT+GGG + chr5_1:18561048-18561067 None:intergenic 25.0%
! CAGATTATATTCACTAATGT+TGG - chr5_1:18561206-18561225 Msa0721650:CDS 25.0%
! AAAAACAAAGGATGATTGAA+TGG + chr5_1:18561909-18561928 None:intergenic 25.0%
! ACAATCGATTAAAAATCCTT+AGG + chr5_1:18561936-18561955 None:intergenic 25.0%
!!! TTCATGAAGCAAGTTTTTTA+GGG + chr5_1:18561966-18561985 None:intergenic 25.0%
!! AAAACAAGTCCTTAAGATTT+TGG + chr5_1:18562028-18562047 None:intergenic 25.0%
! AAACATTAGAGAAGACATTA+TGG - chr5_1:18562086-18562105 Msa0721650:intron 25.0%
! TGTAATAGAGAGAAAATGTA+AGG + chr5_1:18562219-18562238 None:intergenic 25.0%
!!! TCTCATTTTTATTAGAATGG+TGG - chr5_1:18562411-18562430 Msa0721650:intron 25.0%
! AGTAAGATGTAAAATTCAGA+TGG + chr5_1:18562815-18562834 None:intergenic 25.0%
! TAACTCATAAACCTGTTATA+AGG + chr5_1:18562875-18562894 None:intergenic 25.0%
! AGTAGAAAACATTGTGAATA+TGG + chr5_1:18563054-18563073 None:intergenic 25.0%
! CAAATTGGAAACTAAACTTA+AGG + chr5_1:18563105-18563124 None:intergenic 25.0%
!! AGTTTAGTTTCCAATTTGTT+AGG - chr5_1:18563107-18563126 Msa0721650:intron 25.0%
! TATTCATGTTCCTAACAAAT+TGG + chr5_1:18563120-18563139 None:intergenic 25.0%
!! GTAATATAGTCTATTTCTTC+CGG - chr5_1:18563251-18563270 Msa0721650:CDS 25.0%
! ATCTGGCAATAAAAAATTGT+TGG + chr5_1:18563319-18563338 None:intergenic 25.0%
!!! ATTTTTTCAGGTTAAAGCAA+TGG - chr5_1:18563601-18563620 Msa0721650:intron 25.0%
!! GTAATTTTCTTTGCACAAAA+AGG - chr5_1:18563850-18563869 Msa0721650:intron 25.0%
!!! AAAAAGGTTTTGATGGATAT+GGG - chr5_1:18563866-18563885 Msa0721650:intron 25.0%
! TTCATTAACACAGATTATGA+AGG + chr5_1:18564015-18564034 None:intergenic 25.0%
! TTAAATTTCAGTACAAGGTA+GGG + chr5_1:18564219-18564238 None:intergenic 25.0%
!!! ATGTTTAACAAGCTTTATTG+TGG - chr5_1:18564351-18564370 Msa0721650:intron 25.0%
! TGATATAAGAAAAACTCAAC+AGG + chr5_1:18564383-18564402 None:intergenic 25.0%
! ATTAGAAATCTATGAAACAC+TGG - chr5_1:18565180-18565199 Msa0721650:intron 25.0%
! TGATCTAAGTCATAAAAAGA+AGG - chr5_1:18565412-18565431 Msa0721650:intron 25.0%
! TCTTTAATAATATGCAGCAA+AGG - chr5_1:18565464-18565483 Msa0721650:intron 25.0%
!! CAGAAGGTATAAATAAATGA+CGG - chr5_1:18565567-18565586 Msa0721650:intron 25.0%
! AAAACTCAATGGATCAATAA+TGG + chr5_1:18565660-18565679 None:intergenic 25.0%
! GGGATAAAAGAAGAAAATAA+AGG + chr5_1:18565860-18565879 None:intergenic 25.0%
! CTAAAAATGGCATAGAAAAA+GGG + chr5_1:18565880-18565899 None:intergenic 25.0%
! ATTCTGATTTAGCCTAAAAA+TGG + chr5_1:18565893-18565912 None:intergenic 25.0%
!!! ATTATTTTTCCACCATTCTA+AGG - chr5_1:18565911-18565930 Msa0721650:intron 25.0%
!!! TTATTTTTCCACCATTCTAA+GGG - chr5_1:18565912-18565931 Msa0721650:intron 25.0%
! AAACTTACAAAAACAGCTTA+TGG - chr5_1:18565998-18566017 Msa0721650:intron 25.0%
!!! TATTTTCATATGCTAGCTTA+TGG + chr5_1:18566075-18566094 None:intergenic 25.0%
! ATTAGCACTTATATCATAAG+TGG - chr5_1:18566160-18566179 Msa0721650:intron 25.0%
! ATGAACAACTTTGCAATTAA+AGG - chr5_1:18566352-18566371 Msa0721650:intron 25.0%
!!! AGTTTTACAGTTAAAAGTGT+AGG + chr5_1:18566541-18566560 None:intergenic 25.0%
! AAAGTTCAATGATGATTTCA+TGG - chr5_1:18566824-18566843 Msa0721650:intron 25.0%
! AAAAAACTAAGGTTTAAGGA+GGG + chr5_1:18566931-18566950 None:intergenic 25.0%
! AAAAAAACTAAGGTTTAAGG+AGG + chr5_1:18566932-18566951 None:intergenic 25.0%
! GGAAAAAAAACTAAGGTTTA+AGG + chr5_1:18566935-18566954 None:intergenic 25.0%
! TAGAGAAGGAAAAAAAACTA+AGG + chr5_1:18566942-18566961 None:intergenic 25.0%
! AAACCATATTTGTAAAACAC+AGG + chr5_1:18567107-18567126 None:intergenic 25.0%
!! AAAGTGTCAACCTTATTATT+TGG - chr5_1:18567231-18567250 Msa0721650:five_prime_UTR 25.0%
! AAGTGTCAACCTTATTATTT+GGG - chr5_1:18567232-18567251 Msa0721650:five_prime_UTR 25.0%
!!! TTGATTGTGTTTTGACACAT+TGG + chr5_1:18559017-18559036 None:intergenic 30.0%
GGTATTGTCAATAGATAACA+AGG + chr5_1:18559060-18559079 None:intergenic 30.0%
!! AATGCTTGTGATTGATTTTG+TGG + chr5_1:18559102-18559121 None:intergenic 30.0%
! ATTGAATTTTTGCAAGGGAA+GGG + chr5_1:18559127-18559146 None:intergenic 30.0%
! TATTGAATTTTTGCAAGGGA+AGG + chr5_1:18559128-18559147 None:intergenic 30.0%
ACTGAAAAAAAGGGTTCAAA+AGG + chr5_1:18559153-18559172 None:intergenic 30.0%
!!! TTTTGAACCCTTTTTTTCAG+TGG - chr5_1:18559152-18559171 Msa0721650:three_prime_UTR 30.0%
ATCATAGCCACTGAAAAAAA+GGG + chr5_1:18559162-18559181 None:intergenic 30.0%
AATCATAGCCACTGAAAAAA+AGG + chr5_1:18559163-18559182 None:intergenic 30.0%
!! TACACTTGTTGTTTATCACT+CGG - chr5_1:18559311-18559330 Msa0721650:three_prime_UTR 30.0%
GGTCATTTCATCATGTTATA+TGG + chr5_1:18559387-18559406 None:intergenic 30.0%
!!! ATTGGGTTTGTGTTATTTTG+AGG - chr5_1:18559454-18559473 Msa0721650:CDS 30.0%
TCTATGTCATGATTTGATTG+TGG - chr5_1:18559532-18559551 Msa0721650:intron 30.0%
! ACTGTAGTAAGTTGAGAAAA+TGG - chr5_1:18559704-18559723 Msa0721650:intron 30.0%
! ACATGCTTTTGCATTTATAC+TGG - chr5_1:18559860-18559879 Msa0721650:intron 30.0%
TTTGTAATTGTACCATCATG+TGG - chr5_1:18559959-18559978 Msa0721650:intron 30.0%
! TTAAAGTACTTAAGAGTCCA+TGG - chr5_1:18559997-18560016 Msa0721650:intron 30.0%
TCATAGATCATAACATACCA+TGG + chr5_1:18560017-18560036 None:intergenic 30.0%
TTAATCCAACGGATAAGATT+TGG + chr5_1:18560066-18560085 None:intergenic 30.0%
CAACTGTTAGATTAATCCAA+CGG + chr5_1:18560077-18560096 None:intergenic 30.0%
!!! CTGCAATATAATGGTTTTAG+AGG - chr5_1:18560211-18560230 Msa0721650:intron 30.0%
AAAAATCAGTAAGATTGCAG+TGG - chr5_1:18560305-18560324 Msa0721650:intron 30.0%
ATTTAACGTGTAGTAGTGTA+AGG - chr5_1:18560350-18560369 Msa0721650:intron 30.0%
CCAACCAAAATAATTCAAAG+AGG + chr5_1:18560438-18560457 None:intergenic 30.0%
!!! CCTCTTTGAATTATTTTGGT+TGG - chr5_1:18560435-18560454 Msa0721650:CDS 30.0%
! TTAATCGACTCATAGTCTAA+GGG + chr5_1:18560541-18560560 None:intergenic 30.0%
! ATTAATCGACTCATAGTCTA+AGG + chr5_1:18560542-18560561 None:intergenic 30.0%
GATTAATGAAAACGTGAAGA+AGG - chr5_1:18560555-18560574 Msa0721650:CDS 30.0%
CATGAGAAACTATGAATAGT+TGG + chr5_1:18560809-18560828 None:intergenic 30.0%
! CATAGTTTCTCATGCATTTT+TGG - chr5_1:18560815-18560834 Msa0721650:intron 30.0%
!! AGTCTATAACTTGTTCAACA+GGG + chr5_1:18560859-18560878 None:intergenic 30.0%
!! AAGTCTATAACTTGTTCAAC+AGG + chr5_1:18560860-18560879 None:intergenic 30.0%
AATGGTAGTATGTTACACTT+TGG - chr5_1:18560898-18560917 Msa0721650:intron 30.0%
ATGGTAGTATGTTACACTTT+GGG - chr5_1:18560899-18560918 Msa0721650:intron 30.0%
! CCTTTTAAGCAATCAAATCT+TGG + chr5_1:18561049-18561068 None:intergenic 30.0%
CCAAGATTTGATTGCTTAAA+AGG - chr5_1:18561046-18561065 Msa0721650:intron 30.0%
!! AAATTCTATAGGTTAGCTTC+AGG + chr5_1:18561417-18561436 None:intergenic 30.0%
! CTAACCTATAGAATTTTTCC+TGG - chr5_1:18561421-18561440 Msa0721650:intron 30.0%
TCATACCATATGTCAATTCA+TGG - chr5_1:18561570-18561589 Msa0721650:intron 30.0%
CTAAACCATGAATTGACATA+TGG + chr5_1:18561578-18561597 None:intergenic 30.0%
CATATGTCAATTCATGGTTT+AGG - chr5_1:18561576-18561595 Msa0721650:intron 30.0%
GAAAGATACAAAACTTTGAC+CGG + chr5_1:18561808-18561827 None:intergenic 30.0%
!! TAAAGGTACCTCAAAATGTA+TGG + chr5_1:18561871-18561890 None:intergenic 30.0%
!!! TCCTTTGTTTTTCTTTCCTA+AGG - chr5_1:18561917-18561936 Msa0721650:intron 30.0%
TCCTTAGGAAAGAAAAACAA+AGG + chr5_1:18561921-18561940 None:intergenic 30.0%
!!! CTTCATGAAGCAAGTTTTTT+AGG + chr5_1:18561967-18561986 None:intergenic 30.0%
! AAAAACTTGCTTCATGAAGA+TGG - chr5_1:18561968-18561987 Msa0721650:intron 30.0%
!! CCTTAAGATTTTGGTATAGT+TGG + chr5_1:18562019-18562038 None:intergenic 30.0%
CCAACTATACCAAAATCTTA+AGG - chr5_1:18562016-18562035 Msa0721650:intron 30.0%
! TGTTTTCCTAGTAAGACATT+TGG + chr5_1:18562263-18562282 None:intergenic 30.0%
ACATGCTGTTAGAAAGTAAA+CGG - chr5_1:18562303-18562322 Msa0721650:CDS 30.0%
TTATGAACAGCTAACAACTT+AGG + chr5_1:18562331-18562350 None:intergenic 30.0%
TAAGTTGTTAGCTGTTCATA+AGG - chr5_1:18562330-18562349 Msa0721650:CDS 30.0%
AAGTTGTTAGCTGTTCATAA+GGG - chr5_1:18562331-18562350 Msa0721650:CDS 30.0%
!! AATCCAACTATTTCTAAAGC+TGG - chr5_1:18562475-18562494 Msa0721650:intron 30.0%
CTATCACAGAGAAATATACA+TGG - chr5_1:18562590-18562609 Msa0721650:CDS 30.0%
AAAGAAATCCTAGATCTGAA+AGG + chr5_1:18562687-18562706 None:intergenic 30.0%
ATTACTTTACACAATGAACG+CGG - chr5_1:18562734-18562753 Msa0721650:intron 30.0%
AAGAATTGGAAAAATGCTAC+AGG + chr5_1:18562850-18562869 None:intergenic 30.0%
AGCAACTAATGCTATATTGT+AGG - chr5_1:18562932-18562951 Msa0721650:intron 30.0%
AGTTCTATGTAGAAATAGAG+TGG + chr5_1:18563530-18563549 None:intergenic 30.0%
CTCTTAAATTCTCTTCACTA+AGG + chr5_1:18563661-18563680 None:intergenic 30.0%
TAGTGAAGAGAATTTAAGAG+AGG - chr5_1:18563661-18563680 Msa0721650:intron 30.0%
!! GAAGAAAATTTAGTCTTGCT+TGG - chr5_1:18563701-18563720 Msa0721650:intron 30.0%
TTACCAGACGAATATATATC+AGG - chr5_1:18563733-18563752 Msa0721650:intron 30.0%
! TGAAGCAAAGTATACCTTTT+TGG + chr5_1:18563780-18563799 None:intergenic 30.0%
!! TTTGCACAAAAAGGTTTTGA+TGG - chr5_1:18563859-18563878 Msa0721650:intron 30.0%
!! CAAAAAGGTTTTGATGGATA+TGG - chr5_1:18563865-18563884 Msa0721650:intron 30.0%
!! AAAAGGTTTTGATGGATATG+GGG - chr5_1:18563867-18563886 Msa0721650:intron 30.0%
CTTAAATTTCAGTACAAGGT+AGG + chr5_1:18564220-18564239 None:intergenic 30.0%
GATAAACTGTCGAACATTAA+AGG - chr5_1:18564435-18564454 Msa0721650:intron 30.0%
AGTTAAACTTTGAACCTCAA+GGG + chr5_1:18564610-18564629 None:intergenic 30.0%
TGACTGTTGTCTAGATATAT+AGG - chr5_1:18564727-18564746 Msa0721650:CDS 30.0%
GTAGCTACAACAAAAATTGA+AGG + chr5_1:18564794-18564813 None:intergenic 30.0%
AATATTTGTGCTGGAACATT+TGG + chr5_1:18564899-18564918 None:intergenic 30.0%
TAACTCACAAATATTTGTGC+TGG + chr5_1:18564908-18564927 None:intergenic 30.0%
! TAGCACTTATGTTTTTCTGT+CGG - chr5_1:18564926-18564945 Msa0721650:intron 30.0%
TGTAGAACATAGGTAAAAAC+GGG + chr5_1:18565005-18565024 None:intergenic 30.0%
CTGTAGAACATAGGTAAAAA+CGG + chr5_1:18565006-18565025 None:intergenic 30.0%
! TTTTACCTATGTTCTACAGA+TGG - chr5_1:18565007-18565026 Msa0721650:CDS 30.0%
TTTACCTATGTTCTACAGAT+GGG - chr5_1:18565008-18565027 Msa0721650:CDS 30.0%
TAAGAAATATCTCCAGGTTT+GGG + chr5_1:18565050-18565069 None:intergenic 30.0%
! TTTCTTACGACCAATTTGTT+AGG - chr5_1:18565063-18565082 Msa0721650:intron 30.0%
!! TTCTTACGACCAATTTGTTA+GGG - chr5_1:18565064-18565083 Msa0721650:intron 30.0%
! GTTAACTTCCATTTTCTGTA+GGG - chr5_1:18565145-18565164 Msa0721650:intron 30.0%
TATGACTTAGATCAGACATT+TGG + chr5_1:18565406-18565425 None:intergenic 30.0%
TCATAAAAAGAAGGCTCTTT+AGG - chr5_1:18565421-18565440 Msa0721650:intron 30.0%
TGCTGTAACATGAGAATATA+TGG + chr5_1:18565608-18565627 None:intergenic 30.0%
TCATGTTACAGCAACATTAT+TGG - chr5_1:18565615-18565634 Msa0721650:intron 30.0%
TATTTGAGGGAATGAATACA+TGG + chr5_1:18565692-18565711 None:intergenic 30.0%
CCTAAAAATGGCATAGAAAA+AGG + chr5_1:18565881-18565900 None:intergenic 30.0%
!!! CCTTTTTCTATGCCATTTTT+AGG - chr5_1:18565878-18565897 Msa0721650:intron 30.0%
AATAAGCTGAAATCAGCTAA+TGG + chr5_1:18566029-18566048 None:intergenic 30.0%
! GTGAAGTATTAGGTCATATT+TGG + chr5_1:18566218-18566237 None:intergenic 30.0%
!!! GTACAAGTCTTTTAAAACAG+AGG + chr5_1:18566324-18566343 None:intergenic 30.0%
AAGAAAACCAATAGAACGTA+CGG + chr5_1:18566694-18566713 None:intergenic 30.0%
TTTGTGCTAAACTTTGTGTA+GGG - chr5_1:18566734-18566753 Msa0721650:intron 30.0%
GTAATATAGTTGTCCTCAAA+TGG + chr5_1:18566764-18566783 None:intergenic 30.0%
TTGAAACTATCCATAATAGC+AGG + chr5_1:18566804-18566823 None:intergenic 30.0%
TTGTCAGTGATATATAGAGA+AGG + chr5_1:18566956-18566975 None:intergenic 30.0%
GGCACAACATATAATAATAC+AGG + chr5_1:18567008-18567027 None:intergenic 30.0%
TATTATATGTTGTGCCATGA+TGG - chr5_1:18567012-18567031 Msa0721650:five_prime_UTR 30.0%
! TGTCCTGTGTTTTACAAATA+TGG - chr5_1:18567101-18567120 Msa0721650:five_prime_UTR 30.0%
! ATAAGGTTGACACTTTTCTT+AGG + chr5_1:18567227-18567246 None:intergenic 30.0%
ACAATGTCCTTACACAATAT+GGG + chr5_1:18567341-18567360 None:intergenic 30.0%
TACAATGTCCTTACACAATA+TGG + chr5_1:18567342-18567361 None:intergenic 30.0%
!!! GATGTGTCATTTTCTTTTGG+TGG + chr5_1:18558993-18559012 None:intergenic 35.0%
!!! GGAGATGTGTCATTTTCTTT+TGG + chr5_1:18558996-18559015 None:intergenic 35.0%
GTCAATAGATAACAAGGCAT+TGG + chr5_1:18559054-18559073 None:intergenic 35.0%
!!! GGATTCTTGTTTTCCGTTTT+TGG - chr5_1:18559475-18559494 Msa0721650:CDS 35.0%
! TGTTTGTTCACTGCCTTTTT+CGG - chr5_1:18559584-18559603 Msa0721650:intron 35.0%
AGTTGCAAAGAAACCGAAAA+AGG + chr5_1:18559600-18559619 None:intergenic 35.0%
AACTGTTGAACAACGAACAA+AGG - chr5_1:18559775-18559794 Msa0721650:intron 35.0%
! AAAGGTTCAATCTGAAGTGT+CGG - chr5_1:18559793-18559812 Msa0721650:intron 35.0%
TAAGATTTGGAAAGAGAGGA+TGG + chr5_1:18560053-18560072 None:intergenic 35.0%
TCTTTCCAAATCTTATCCGT+TGG - chr5_1:18560058-18560077 Msa0721650:intron 35.0%
! TCTAACAGTTGAGATTTTGC+TGG - chr5_1:18560086-18560105 Msa0721650:intron 35.0%
! ATTTTGCTGGAGAGACATAA+GGG - chr5_1:18560099-18560118 Msa0721650:intron 35.0%
ACCATGTTGTGTATGATTGT+TGG - chr5_1:18560131-18560150 Msa0721650:intron 35.0%
TCCAACAATCATACACAACA+TGG + chr5_1:18560135-18560154 None:intergenic 35.0%
! CAGACCGCAATTTAAAACTA+TGG + chr5_1:18560188-18560207 None:intergenic 35.0%
CAGTGTTAGATCTTACTAGA+CGG - chr5_1:18560394-18560413 Msa0721650:intron 35.0%
!! TCTGCTTAACTTGCACTTAT+AGG - chr5_1:18560682-18560701 Msa0721650:intron 35.0%
!! CTTAACTTGCACTTATAGGT+TGG - chr5_1:18560686-18560705 Msa0721650:intron 35.0%
GTAACATACTACCATTACCA+TGG + chr5_1:18560894-18560913 None:intergenic 35.0%
AGCAACTTAACTATGAGAAG+AGG + chr5_1:18561123-18561142 None:intergenic 35.0%
CTGTCCAGGAAAAATTCTAT+AGG + chr5_1:18561428-18561447 None:intergenic 35.0%
! CTATAGAATTTTTCCTGGAC+AGG - chr5_1:18561426-18561445 Msa0721650:intron 35.0%
TTAGGATCATCAAGTAGGAA+TGG + chr5_1:18561472-18561491 None:intergenic 35.0%
GTTAATCTCTCATTCACATC+TGG - chr5_1:18561635-18561654 Msa0721650:intron 35.0%
! GACTATGACCATACATTTTG+AGG - chr5_1:18561860-18561879 Msa0721650:intron 35.0%
GGAAAACTCGCAGATATTAA+AGG + chr5_1:18561888-18561907 None:intergenic 35.0%
CCTAGTAAGACATTTGGTTA+TGG + chr5_1:18562257-18562276 None:intergenic 35.0%
CCATAACCAAATGTCTTACT+AGG - chr5_1:18562254-18562273 Msa0721650:intron 35.0%
ATGAGACTTTGAACACAATG+TGG + chr5_1:18562397-18562416 None:intergenic 35.0%
! TTATTAGAATGGTGGCGAAA+AGG - chr5_1:18562419-18562438 Msa0721650:intron 35.0%
TAAAAGCCTCTATGACCAAA+AGG + chr5_1:18562449-18562468 None:intergenic 35.0%
!! GAACCAGCTTTAGAAATAGT+TGG + chr5_1:18562481-18562500 None:intergenic 35.0%
CCTGTTATAAGGAGAAGAAT+TGG + chr5_1:18562864-18562883 None:intergenic 35.0%
CCAATTCTTCTCCTTATAAC+AGG - chr5_1:18562861-18562880 Msa0721650:CDS 35.0%
TGGAGCATAAACAAATACCT+CGG + chr5_1:18563034-18563053 None:intergenic 35.0%
TCAGTAAGATAGATGAACTC+TGG + chr5_1:18563170-18563189 None:intergenic 35.0%
GAGTTCATCTATCTTACTGA+CGG - chr5_1:18563170-18563189 Msa0721650:intron 35.0%
! TTCCGGTACTTAATTTTCTG+TGG - chr5_1:18563268-18563287 Msa0721650:CDS 35.0%
GACCACAGAAAATTAAGTAC+CGG + chr5_1:18563273-18563292 None:intergenic 35.0%
CAATTGTTGCAGAGTAAAGT+GGG + chr5_1:18563363-18563382 None:intergenic 35.0%
ACTTCGAAAATCAGTTAGAG+AGG - chr5_1:18563453-18563472 Msa0721650:intron 35.0%
CATCCTGATATATATTCGTC+TGG + chr5_1:18563739-18563758 None:intergenic 35.0%
!! ACCTTTTTGGCACTAATGAA+GGG + chr5_1:18563767-18563786 None:intergenic 35.0%
!! TACCTTTTTGGCACTAATGA+AGG + chr5_1:18563768-18563787 None:intergenic 35.0%
!!! AAAGGGTATTTTGGTGAATG+TGG - chr5_1:18563938-18563957 Msa0721650:intron 35.0%
AGAAATATCAGCTTGACACT+CGG + chr5_1:18564046-18564065 None:intergenic 35.0%
TAGAAAAATGAGAGCAAGCA+AGG - chr5_1:18564247-18564266 Msa0721650:intron 35.0%
GGATCAAACTCTAGACTATA+CGG - chr5_1:18564268-18564287 Msa0721650:intron 35.0%
ATGGAGTTCAAATTCCTTCA+GGG + chr5_1:18564587-18564606 None:intergenic 35.0%
GAGTTAAACTTTGAACCTCA+AGG + chr5_1:18564611-18564630 None:intergenic 35.0%
AGACATCATGAAACAGTACA+TGG - chr5_1:18564645-18564664 Msa0721650:intron 35.0%
!! CGAACTGAATATTTTTGCTG+TGG - chr5_1:18564682-18564701 Msa0721650:intron 35.0%
ACTGTCTGCAAAAGAAAATG+AGG + chr5_1:18564839-18564858 None:intergenic 35.0%
ACATAGGTAAAAACGGGAAA+GGG + chr5_1:18564999-18565018 None:intergenic 35.0%
AACATAGGTAAAAACGGGAA+AGG + chr5_1:18565000-18565019 None:intergenic 35.0%
GTAAGAAATATCTCCAGGTT+TGG + chr5_1:18565051-18565070 None:intergenic 35.0%
ATTACCTCTCCCTAACAAAT+TGG + chr5_1:18565076-18565095 None:intergenic 35.0%
! GGTTAACTTCCATTTTCTGT+AGG - chr5_1:18565144-18565163 Msa0721650:intron 35.0%
GAATACAACCCTACAGAAAA+TGG + chr5_1:18565156-18565175 None:intergenic 35.0%
TAACACAATACTCACACATG+TGG + chr5_1:18565286-18565305 None:intergenic 35.0%
CTTCAAATCAAATGTGCATC+TGG + chr5_1:18565336-18565355 None:intergenic 35.0%
AATCACTAAGAAGAAGAGCA+AGG - chr5_1:18565495-18565514 Msa0721650:intron 35.0%
GTTGTTTGCAATTTCACAGA+AGG - chr5_1:18565551-18565570 Msa0721650:intron 35.0%
! GCAACATTATTGGACTGTTT+TGG - chr5_1:18565625-18565644 Msa0721650:CDS 35.0%
TGGATCAATAATGGTTTACC+AGG + chr5_1:18565651-18565670 None:intergenic 35.0%
!!! TGATCCATTGAGTTTTGTTC+AGG - chr5_1:18565664-18565683 Msa0721650:CDS 35.0%
!!! TTGGTGGCAGTTTTATTTGA+GGG + chr5_1:18565705-18565724 None:intergenic 35.0%
!!! TTTGGTGGCAGTTTTATTTG+AGG + chr5_1:18565706-18565725 None:intergenic 35.0%
!!! TTAGCAGTCTCTAAAGCTTT+TGG + chr5_1:18565724-18565743 None:intergenic 35.0%
! TTACTACTGTCTCAAGCTTT+TGG - chr5_1:18565768-18565787 Msa0721650:intron 35.0%
!! CTTATTTTCATAAGCTCTCC+AGG - chr5_1:18566043-18566062 Msa0721650:intron 35.0%
!!! AGTCTTTTAAAACAGAGGCA+AGG + chr5_1:18566319-18566338 None:intergenic 35.0%
! AAGGCTTCAGAAGACATTTT+CGG + chr5_1:18566400-18566419 None:intergenic 35.0%
!! AGCAAAGATCGTTTTTCGAA+AGG + chr5_1:18566442-18566461 None:intergenic 35.0%
CTTTGTGCTAAACTTTGTGT+AGG - chr5_1:18566733-18566752 Msa0721650:intron 35.0%
! ATGGGATCGATTGAACTTTT+CGG + chr5_1:18566897-18566916 None:intergenic 35.0%
!!! AGGAGGGTATGTTTTTTGAT+GGG + chr5_1:18566915-18566934 None:intergenic 35.0%
!!! AAGGAGGGTATGTTTTTTGA+TGG + chr5_1:18566916-18566935 None:intergenic 35.0%
AAGATGATTGTTTGCCATCA+TGG + chr5_1:18567029-18567048 None:intergenic 35.0%
TCTTAGGACTTGTAAAACAC+AGG + chr5_1:18567211-18567230 None:intergenic 35.0%
TCGTCATCTCCCAAATAATA+AGG + chr5_1:18567244-18567263 None:intergenic 35.0%
CAGAATACCCATATTGTGTA+AGG - chr5_1:18567331-18567350 Msa0721650:five_prime_UTR 35.0%
!! GTCATTTTCTTTTGGTGGAG+TGG + chr5_1:18558988-18559007 None:intergenic 40.0%
TACCCTTTAAGCCTAAAGCT+AGG - chr5_1:18559076-18559095 Msa0721650:three_prime_UTR 40.0%
!! TGATTTTGTGGCCTAGCTTT+AGG + chr5_1:18559090-18559109 None:intergenic 40.0%
ATAGACACAACATCGATACG+TGG - chr5_1:18559681-18559700 Msa0721650:intron 40.0%
GTTCAACAGTTATCAGACAC+CGG + chr5_1:18559766-18559785 None:intergenic 40.0%
!!! CTGTGCATAGGTTTTGAGTT+GGG - chr5_1:18559816-18559835 Msa0721650:intron 40.0%
!!! TGTGCATAGGTTTTGAGTTG+GGG - chr5_1:18559817-18559836 Msa0721650:intron 40.0%
CGGATAAGATTTGGAAAGAG+AGG + chr5_1:18560057-18560076 None:intergenic 40.0%
! GATTTTGCTGGAGAGACATA+AGG - chr5_1:18560098-18560117 Msa0721650:intron 40.0%
!! TGCACTTATAGGTTGGTTGA+AGG - chr5_1:18560693-18560712 Msa0721650:intron 40.0%
ACATACTACCATTACCATGG+TGG + chr5_1:18560891-18560910 None:intergenic 40.0%
CTCGTTAAATTTCAAGCAGC+TGG + chr5_1:18560994-18561013 None:intergenic 40.0%
CAACGTTAGGATCATCAAGT+AGG + chr5_1:18561477-18561496 None:intergenic 40.0%
! CTACTTGATGATCCTAACGT+TGG - chr5_1:18561475-18561494 Msa0721650:intron 40.0%
CAGTATCTCTCATTCACATC+TGG - chr5_1:18561535-18561554 Msa0721650:intron 40.0%
TATCTCTCATTCACATCTGG+TGG - chr5_1:18561538-18561557 Msa0721650:intron 40.0%
TCATTCACATCTGGTGGTTT+AGG - chr5_1:18561544-18561563 Msa0721650:intron 40.0%
AATCTCTCATTCACATCTGG+TGG - chr5_1:18561638-18561657 Msa0721650:intron 40.0%
TCATTCACATCTGGTGGTTT+AGG - chr5_1:18561544-18561563 Msa0721650:intron 40.0%
ACTTGCTTCATGAAGATGGT+TGG - chr5_1:18561972-18561991 Msa0721650:intron 40.0%
CTTGCTTCATGAAGATGGTT+GGG - chr5_1:18561973-18561992 Msa0721650:intron 40.0%
TCTCTGTGATAGATTGCAAG+TGG + chr5_1:18562582-18562601 None:intergenic 40.0%
CAAGCTAGAACAATCTTGCT+AGG + chr5_1:18562773-18562792 None:intergenic 40.0%
AAGTGGCAGAGTTTATACAG+AGG - chr5_1:18562996-18563015 Msa0721650:intron 40.0%
AATACTATCATCAGAGGCGA+AGG - chr5_1:18563221-18563240 Msa0721650:intron 40.0%
! CAGAGTAAAGTGGGTATTGT+GGG + chr5_1:18563354-18563373 None:intergenic 40.0%
GCAATTGTTGCAGAGTAAAG+TGG + chr5_1:18563364-18563383 None:intergenic 40.0%
TCTGCAACAATTGCTCTTCT+TGG - chr5_1:18563370-18563389 Msa0721650:intron 40.0%
CTGCAACAATTGCTCTTCTT+GGG - chr5_1:18563371-18563390 Msa0721650:intron 40.0%
TGCAACAATTGCTCTTCTTG+GGG - chr5_1:18563372-18563391 Msa0721650:intron 40.0%
ACCTTGAAGAGACAGCAAAT+TGG - chr5_1:18563413-18563432 Msa0721650:intron 40.0%
CCTTGAAGAGACAGCAAATT+GGG - chr5_1:18563414-18563433 Msa0721650:intron 40.0%
CTTGAAGAGACAGCAAATTG+GGG - chr5_1:18563415-18563434 Msa0721650:intron 40.0%
GCAATGGTGATCATAAATCC+TGG - chr5_1:18563617-18563636 Msa0721650:intron 40.0%
ATAAATCCTGGAAACCCTAC+TGG - chr5_1:18563629-18563648 Msa0721650:intron 40.0%
!! TTTAGTCTTGCTTGGAGATG+AGG - chr5_1:18563709-18563728 Msa0721650:intron 40.0%
ACCCTTCATTAGTGCCAAAA+AGG - chr5_1:18563763-18563782 Msa0721650:intron 40.0%
!! CCAGCTTGTTTCTTTTCACT+CGG - chr5_1:18563910-18563929 Msa0721650:intron 40.0%
!!! TCTTTTCACTCGGTGTCAAA+AGG - chr5_1:18563920-18563939 Msa0721650:intron 40.0%
!!! CTTTTCACTCGGTGTCAAAA+GGG - chr5_1:18563921-18563940 Msa0721650:intron 40.0%
!!! TCGGTGTCAAAAGGGTATTT+TGG - chr5_1:18563929-18563948 Msa0721650:intron 40.0%
TTATGAAGGAGACAAACCTC+TGG + chr5_1:18564001-18564020 None:intergenic 40.0%
TCTCTCATGCAAAATCCCTA+CGG - chr5_1:18564163-18564182 Msa0721650:intron 40.0%
AATTTCAGTACAAGGTAGGG+TGG + chr5_1:18564216-18564235 None:intergenic 40.0%
TCATTGAGAAGCTCATGTCA+CGG - chr5_1:18564400-18564419 Msa0721650:intron 40.0%
GACGGTTGTAAAACGATCAT+TGG + chr5_1:18564565-18564584 None:intergenic 40.0%
AGTTCAAATTCCTTCAGGGA+CGG + chr5_1:18564583-18564602 None:intergenic 40.0%
GATGGAGTTCAAATTCCTTC+AGG + chr5_1:18564588-18564607 None:intergenic 40.0%
AATTTGAACTCCATCCCTTG+AGG - chr5_1:18564593-18564612 Msa0721650:intron 40.0%
AAACTTTGAACCTCAAGGGA+TGG + chr5_1:18564606-18564625 None:intergenic 40.0%
CACTTGCATGTTAACTCAGA+TGG + chr5_1:18564754-18564773 None:intergenic 40.0%
TAGTCCCATCTGTAGAACAT+AGG + chr5_1:18565015-18565034 None:intergenic 40.0%
TGGTCGTAAGAAATATCTCC+AGG + chr5_1:18565056-18565075 None:intergenic 40.0%
TAGTGTCCGATACTGACATA+TGG - chr5_1:18565304-18565323 Msa0721650:intron 40.0%
TGTCTGCCATATGTCAGTAT+CGG + chr5_1:18565313-18565332 None:intergenic 40.0%
!!! ATTATTGGACTGTTTTGGCC+TGG - chr5_1:18565630-18565649 Msa0721650:CDS 40.0%
!! AGCTTTAGAGACTGCTAAAC+AGG - chr5_1:18565726-18565745 Msa0721650:exon 40.0%
TCAGGATTTGGACAGAAAGA+AGG - chr5_1:18565820-18565839 Msa0721650:intron 40.0%
CAGGATTTGGACAGAAAGAA+GGG - chr5_1:18565821-18565840 Msa0721650:intron 40.0%
ATCCAAACAGACCCTTAGAA+TGG + chr5_1:18565926-18565945 None:intergenic 40.0%
AATAGAACGTACGGTCTGAT+TGG + chr5_1:18566685-18566704 None:intergenic 40.0%
AATCAGACCGTACGTTCTAT+TGG - chr5_1:18566684-18566703 Msa0721650:intron 40.0%
! TGTGTAGGGTTTTCCATTTG+AGG - chr5_1:18566748-18566767 Msa0721650:intron 40.0%
GACAACTATATTACCAGCTG+AGG - chr5_1:18566770-18566789 Msa0721650:intron 40.0%
GGAAGAAATGCCTGCTATTA+TGG - chr5_1:18566791-18566810 Msa0721650:intron 40.0%
ACAACCTTGAATAACCTCTG+TGG + chr5_1:18566863-18566882 None:intergenic 40.0%
TAGGACTTGTAAAACACAGG+AGG + chr5_1:18567208-18567227 None:intergenic 40.0%
!! GGCCTAGCTTTAGGCTTAAA+GGG + chr5_1:18559081-18559100 None:intergenic 45.0%
!! TGGCCTAGCTTTAGGCTTAA+AGG + chr5_1:18559082-18559101 None:intergenic 45.0%
!!! GCTGTGCATAGGTTTTGAGT+TGG - chr5_1:18559815-18559834 Msa0721650:intron 45.0%
!!! GTGCATAGGTTTTGAGTTGG+GGG - chr5_1:18559818-18559837 Msa0721650:intron 45.0%
ACACAGCATATGCCACATGA+TGG + chr5_1:18559974-18559993 None:intergenic 45.0%
GGTCTGCAGCTGCAATATAA+TGG - chr5_1:18560202-18560221 Msa0721650:intron 45.0%
! TCATAGTCTAAGGGCTTTGG+TGG + chr5_1:18560532-18560551 None:intergenic 45.0%
GACTCATAGTCTAAGGGCTT+TGG + chr5_1:18560535-18560554 None:intergenic 45.0%
AGACTTTAGCATTGCCACCA+TGG - chr5_1:18560874-18560893 Msa0721650:intron 45.0%
TAGCATTGCCACCATGGTAA+TGG - chr5_1:18560880-18560899 Msa0721650:intron 45.0%
TTTCAAGCAGCTGGAGAGTA+TGG + chr5_1:18560985-18561004 None:intergenic 45.0%
TGTTGGAAACCCACATGCTT+TGG - chr5_1:18561223-18561242 Msa0721650:intron 45.0%
GTTGGAAACCCACATGCTTT+GGG - chr5_1:18561224-18561243 Msa0721650:intron 45.0%
GTTTCTGTCCCAAAGCATGT+GGG + chr5_1:18561235-18561254 None:intergenic 45.0%
TATGGTAGTTGTGCTGAACC+TGG + chr5_1:18561274-18561293 None:intergenic 45.0%
CTCTTGCAATTGCATCAGCT+GGG + chr5_1:18561510-18561529 None:intergenic 45.0%
AGCTGTTCATAAGGGACCTT+TGG - chr5_1:18562339-18562358 Msa0721650:CDS 45.0%
! TCATAAGGGACCTTTGGCTT+TGG - chr5_1:18562345-18562364 Msa0721650:CDS 45.0%
TGGAGCAGGAGAAGATACAT+AGG - chr5_1:18562365-18562384 Msa0721650:CDS 45.0%
! TGGCGAAAAGGTTGACCTTT+TGG - chr5_1:18562431-18562450 Msa0721650:intron 45.0%
! GGTTGACCTTTTGGTCATAG+AGG - chr5_1:18562440-18562459 Msa0721650:intron 45.0%
AGATCTGAAAGGTCCATGAG+AGG + chr5_1:18562676-18562695 None:intergenic 45.0%
CTCATGGACCTTTCAGATCT+AGG - chr5_1:18562676-18562695 Msa0721650:intron 45.0%
GGTGCTTATAGTGATTCTCG+AGG - chr5_1:18562953-18562972 Msa0721650:intron 45.0%
! GAGTTTATACAGAGGCGTGA+TGG - chr5_1:18563004-18563023 Msa0721650:intron 45.0%
CTCTGGATCACTACAAACAG+AGG + chr5_1:18563153-18563172 None:intergenic 45.0%
! TAAAGTGGGTATTGTGGGAC+TGG + chr5_1:18563349-18563368 None:intergenic 45.0%
! GCAGAGTAAAGTGGGTATTG+TGG + chr5_1:18563355-18563374 None:intergenic 45.0%
GCAACAATTGCTCTTCTTGG+GGG - chr5_1:18563373-18563392 Msa0721650:intron 45.0%
GCTGTCTCTTCAAGGTAGTA+TGG + chr5_1:18563409-18563428 None:intergenic 45.0%
!! CCCAATTTGCTGTCTCTTCA+AGG + chr5_1:18563417-18563436 None:intergenic 45.0%
GTTAGAGAGGCTCGCTATAA+AGG - chr5_1:18563466-18563485 Msa0721650:intron 45.0%
!! CACTAAGGCATTGACCAGTA+GGG + chr5_1:18563646-18563665 None:intergenic 45.0%
!! TCACTAAGGCATTGACCAGT+AGG + chr5_1:18563647-18563666 None:intergenic 45.0%
CCGAGTGAAAAGAAACAAGC+TGG + chr5_1:18563913-18563932 None:intergenic 45.0%
TTTGGTGAATGTGGACAACG+TGG - chr5_1:18563947-18563966 Msa0721650:intron 45.0%
AATGACCAACATTCCTCCAG+AGG - chr5_1:18563982-18564001 Msa0721650:intron 45.0%
! ACAAACCTCTGGAGGAATGT+TGG + chr5_1:18563990-18564009 None:intergenic 45.0%
TCCATGTTTCAAGCTCCGTA+GGG + chr5_1:18564181-18564200 None:intergenic 45.0%
ATCCATGTTTCAAGCTCCGT+AGG + chr5_1:18564182-18564201 None:intergenic 45.0%
TTCATGATGTCTCAGCTCAG+TGG + chr5_1:18564637-18564656 None:intergenic 45.0%
AGGGTGAGGAAAAGGAGATA+GGG + chr5_1:18564980-18564999 None:intergenic 45.0%
AAGGGTGAGGAAAAGGAGAT+AGG + chr5_1:18564981-18565000 None:intergenic 45.0%
ATGATCAATCCACCCAAACC+TGG - chr5_1:18565035-18565054 Msa0721650:CDS 45.0%
GAAATATCTCCAGGTTTGGG+TGG + chr5_1:18565047-18565066 None:intergenic 45.0%
!! ACGACCAATTTGTTAGGGAG+AGG - chr5_1:18565069-18565088 Msa0721650:intron 45.0%
AGTTAAACATGTGCCCGTGT+CGG + chr5_1:18565226-18565245 None:intergenic 45.0%
AGAGCAAGGATCATGACTGA+TGG - chr5_1:18565509-18565528 Msa0721650:intron 45.0%
GGCACCTGAACAAAACTCAA+TGG + chr5_1:18565671-18565690 None:intergenic 45.0%
!!! GCAGTCTCTAAAGCTTTTGG+TGG + chr5_1:18565721-18565740 None:intergenic 45.0%
TTAGAGACTGCTAAACAGGC+TGG - chr5_1:18565730-18565749 Msa0721650:exon 45.0%
CAAACAGACCCTTAGAATGG+TGG + chr5_1:18565923-18565942 None:intergenic 45.0%
! CACCATTCTAAGGGTCTGTT+TGG - chr5_1:18565921-18565940 Msa0721650:intron 45.0%
GAACAATATGACGACCACAG+AGG - chr5_1:18566846-18566865 Msa0721650:intron 45.0%
ACGACCACAGAGGTTATTCA+AGG - chr5_1:18566856-18566875 Msa0721650:intron 45.0%
ACTAAGTGGAGTCAGCTACA+TGG + chr5_1:18567158-18567177 None:intergenic 45.0%
! ATGTAGCTGACTCCACTTAG+TGG - chr5_1:18567157-18567176 Msa0721650:five_prime_UTR 45.0%
! TGTAGCTGACTCCACTTAGT+GGG - chr5_1:18567158-18567177 Msa0721650:five_prime_UTR 45.0%
TGACTCCACTTAGTGGGATA+AGG - chr5_1:18567164-18567183 Msa0721650:five_prime_UTR 45.0%
! CAAAGCCTTATCCCACTAAG+TGG + chr5_1:18567172-18567191 None:intergenic 45.0%
GACTTGTAAAACACAGGAGG+AGG + chr5_1:18567205-18567224 None:intergenic 45.0%
!!! AAATATTTTAAATTAACTTA+GGG + chr5_1:18560334-18560353 None:intergenic 5.0%
!!! TAAATATTTTAAATTAACTT+AGG + chr5_1:18560335-18560354 None:intergenic 5.0%
AACAGTTATCAGACACCGGC+AGG + chr5_1:18559762-18559781 None:intergenic 50.0%
AAGGCTCAGTATGCTGTCAG+AGG - chr5_1:18560574-18560593 Msa0721650:intron 50.0%
!! TTTGCCCTCCTTCTGAAGCT+CGG + chr5_1:18560620-18560639 None:intergenic 50.0%
GCTTCAGAAGGAGGGCAAAA+AGG - chr5_1:18560621-18560640 Msa0721650:intron 50.0%
GTTCAACAGGGTCACACTTG+TGG + chr5_1:18560847-18560866 None:intergenic 50.0%
GGTTTCTGTCCCAAAGCATG+TGG + chr5_1:18561236-18561255 None:intergenic 50.0%
CACAAAGCAACAACCTGTCC+AGG + chr5_1:18561442-18561461 None:intergenic 50.0%
!! ACAGGTTGTTGCTTTGTGCC+AGG - chr5_1:18561444-18561463 Msa0721650:intron 50.0%
CATCAAGTAGGAATGGAGCC+TGG + chr5_1:18561465-18561484 None:intergenic 50.0%
GGGAATAGCAGTCCAACGTT+AGG + chr5_1:18561490-18561509 None:intergenic 50.0%
GCTCTTGCAATTGCATCAGC+TGG + chr5_1:18561511-18561530 None:intergenic 50.0%
TTCTCCTGCTCCAAAGCCAA+AGG + chr5_1:18562358-18562377 None:intergenic 50.0%
ACCTCTTCCATTGCCTCTCA+TGG - chr5_1:18562660-18562679 Msa0721650:intron 50.0%
TCCATGAGAGGCAATGGAAG+AGG + chr5_1:18562664-18562683 None:intergenic 50.0%
GAAAGGTCCATGAGAGGCAA+TGG + chr5_1:18562670-18562689 None:intergenic 50.0%
! TAGTGATTCTCGAGGCACTC+CGG - chr5_1:18562961-18562980 Msa0721650:intron 50.0%
ATCATCAGAGGCGAAGGAGA+TGG - chr5_1:18563227-18563246 Msa0721650:intron 50.0%
TCATCAGAGGCGAAGGAGAT+GGG - chr5_1:18563228-18563247 Msa0721650:intron 50.0%
GTGGGACTGGAACCATAATC+TGG + chr5_1:18563336-18563355 None:intergenic 50.0%
CATTGACCAGTAGGGTTTCC+AGG + chr5_1:18563638-18563657 None:intergenic 50.0%
TGAAGGAGACAAACCTCTGG+AGG + chr5_1:18563998-18564017 None:intergenic 50.0%
TCCCTACGGAGCTTGAAACA+TGG - chr5_1:18564177-18564196 Msa0721650:intron 50.0%
! CGTTTTACAACCGTCCCTGA+AGG - chr5_1:18564570-18564589 Msa0721650:intron 50.0%
AACGGGAAAGGGTGAGGAAA+AGG + chr5_1:18564988-18565007 None:intergenic 50.0%
GGTAAAAACGGGAAAGGGTG+AGG + chr5_1:18564994-18565013 None:intergenic 50.0%
CTCCGAACACAATACCGACA+CGG - chr5_1:18565209-18565228 Msa0721650:intron 50.0%
TCCGAACACAATACCGACAC+GGG - chr5_1:18565210-18565229 Msa0721650:intron 50.0%
!! CTGATGGATTCAACAGCTGC+AGG - chr5_1:18565525-18565544 Msa0721650:intron 50.0%
!! CTCAAGCTTTTGGAAGCCAC+TGG - chr5_1:18565778-18565797 Msa0721650:intron 50.0%
AGGAACAGTGGATATGCCAG+TGG + chr5_1:18565797-18565816 None:intergenic 50.0%
ACTGGCATATCCACTGTTCC+TGG - chr5_1:18565796-18565815 Msa0721650:intron 50.0%
ATATCCACTGTTCCTGGCTC+AGG - chr5_1:18565802-18565821 Msa0721650:intron 50.0%
AAATCCTGAGCCAGGAACAG+TGG + chr5_1:18565809-18565828 None:intergenic 50.0%
ACTGTTCCTGGCTCAGGATT+TGG - chr5_1:18565808-18565827 Msa0721650:intron 50.0%
TTCTGTCCAAATCCTGAGCC+AGG + chr5_1:18565817-18565836 None:intergenic 50.0%
! GCTAGCTTATGGAACTCTCC+TGG + chr5_1:18566064-18566083 None:intergenic 50.0%
!! CTGAAGTGTCGGCTGTGCAT+AGG - chr5_1:18559804-18559823 Msa0721650:intron 55.0%
! TGGGGGAGCACATATTCGTG+TGG - chr5_1:18559835-18559854 Msa0721650:intron 55.0%
! TCTGAAGCTCGGTAGCTCGA+AGG + chr5_1:18560609-18560628 None:intergenic 55.0%
TCGAGCTACCGAGCTTCAGA+AGG - chr5_1:18560609-18560628 Msa0721650:intron 55.0%
AGCTACCGAGCTTCAGAAGG+AGG - chr5_1:18560612-18560631 Msa0721650:intron 55.0%
GCTACCGAGCTTCAGAAGGA+GGG - chr5_1:18560613-18560632 Msa0721650:intron 55.0%
AGTTGTGCTGAACCTGGCGA+GGG + chr5_1:18561268-18561287 None:intergenic 55.0%
TAGTTGTGCTGAACCTGGCG+AGG + chr5_1:18561269-18561288 None:intergenic 55.0%
! AGAGGCGTGATGGTTATCCG+AGG - chr5_1:18563014-18563033 Msa0721650:intron 55.0%
TCTTACTGACGGTGCGAGCA+AGG - chr5_1:18563181-18563200 Msa0721650:intron 55.0%
CATCAGAGGCGAAGGAGATG+GGG - chr5_1:18563229-18563248 Msa0721650:intron 55.0%
GGTGAATGTGGACAACGTGG+TGG - chr5_1:18563950-18563969 Msa0721650:intron 55.0%
GCTCATGTCACGGCATGAAG+TGG - chr5_1:18564410-18564429 Msa0721650:intron 55.0%
! GCCCGTGTCGGTATTGTGTT+CGG + chr5_1:18565214-18565233 None:intergenic 55.0%
GCAGGCATTTCTTCCTCAGC+TGG + chr5_1:18566786-18566805 None:intergenic 55.0%
CACGTGTGTCAGTGTCCTGC+CGG - chr5_1:18559744-18559763 Msa0721650:intron 60.0%
!! GGGACCTTTGGCTTTGGAGC+AGG - chr5_1:18562351-18562370 Msa0721650:CDS 60.0%
TCCGGCAGTGAGGAAGGAAG+TGG - chr5_1:18562979-18562998 Msa0721650:intron 60.0%
GCCACTTCCTTCCTCACTGC+CGG + chr5_1:18562983-18563002 None:intergenic 60.0%
ACCACTGACCTTCCCTCGCC+AGG - chr5_1:18561253-18561272 Msa0721650:intron 65.0%
ACCTGGCGAGGGAAGGTCAG+TGG + chr5_1:18561257-18561276 None:intergenic 65.0%
GTGCTGAACCTGGCGAGGGA+AGG + chr5_1:18561264-18561283 None:intergenic 65.0%
AGGCACTCCGGCAGTGAGGA+AGG - chr5_1:18562973-18562992 Msa0721650:intron 65.0%
! CTCGAGGCACTCCGGCAGTG+AGG - chr5_1:18562969-18562988 Msa0721650:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 18558905 18567361 18558905 ID=Msa0721650;Name=Msa0721650
chr5_1 mRNA 18558905 18567361 18558905 ID=Msa0721650-mRNA-1;Parent=Msa0721650;Name=Msa0721650-mRNA-1;_AED=0.07;_eAED=0.07;_QI=484|1|1|1|0.92|0.85|14|477|481
chr5_1 exon 18558905 18559511 18558905 ID=Msa0721650-mRNA-1:exon:6999;Parent=Msa0721650-mRNA-1
chr5_1 exon 18560424 18560580 18560424 ID=Msa0721650-mRNA-1:exon:6998;Parent=Msa0721650-mRNA-1
chr5_1 exon 18560694 18560785 18560694 ID=Msa0721650-mRNA-1:exon:6997;Parent=Msa0721650-mRNA-1
chr5_1 exon 18561176 18561240 18561176 ID=Msa0721650-mRNA-1:exon:6996;Parent=Msa0721650-mRNA-1
chr5_1 exon 18561347 18561412 18561347 ID=Msa0721650-mRNA-1:exon:6995;Parent=Msa0721650-mRNA-1
chr5_1 exon 18562263 18562394 18562263 ID=Msa0721650-mRNA-1:exon:6994;Parent=Msa0721650-mRNA-1
chr5_1 exon 18562482 18562655 18562482 ID=Msa0721650-mRNA-1:exon:6993;Parent=Msa0721650-mRNA-1
chr5_1 exon 18562771 18562929 18562771 ID=Msa0721650-mRNA-1:exon:6992;Parent=Msa0721650-mRNA-1
chr5_1 exon 18563016 18563103 18563016 ID=Msa0721650-mRNA-1:exon:6991;Parent=Msa0721650-mRNA-1
chr5_1 exon 18563231 18563312 18563231 ID=Msa0721650-mRNA-1:exon:6990;Parent=Msa0721650-mRNA-1
chr5_1 exon 18564701 18564818 18564701 ID=Msa0721650-mRNA-1:exon:6989;Parent=Msa0721650-mRNA-1
chr5_1 exon 18564992 18565057 18564992 ID=Msa0721650-mRNA-1:exon:6988;Parent=Msa0721650-mRNA-1
chr5_1 exon 18565624 18565770 18565624 ID=Msa0721650-mRNA-1:exon:6987;Parent=Msa0721650-mRNA-1
chr5_1 exon 18566908 18567361 18566908 ID=Msa0721650-mRNA-1:exon:6986;Parent=Msa0721650-mRNA-1
chr5_1 five_prime_UTR 18566908 18567361 18566908 ID=Msa0721650-mRNA-1:five_prime_utr;Parent=Msa0721650-mRNA-1
chr5_1 five_prime_UTR 18565741 18565770 18565741 ID=Msa0721650-mRNA-1:five_prime_utr;Parent=Msa0721650-mRNA-1
chr5_1 CDS 18565624 18565740 18565624 ID=Msa0721650-mRNA-1:cds;Parent=Msa0721650-mRNA-1
chr5_1 CDS 18564992 18565057 18564992 ID=Msa0721650-mRNA-1:cds;Parent=Msa0721650-mRNA-1
chr5_1 CDS 18564701 18564818 18564701 ID=Msa0721650-mRNA-1:cds;Parent=Msa0721650-mRNA-1
chr5_1 CDS 18563231 18563312 18563231 ID=Msa0721650-mRNA-1:cds;Parent=Msa0721650-mRNA-1
chr5_1 CDS 18563016 18563103 18563016 ID=Msa0721650-mRNA-1:cds;Parent=Msa0721650-mRNA-1
chr5_1 CDS 18562771 18562929 18562771 ID=Msa0721650-mRNA-1:cds;Parent=Msa0721650-mRNA-1
chr5_1 CDS 18562482 18562655 18562482 ID=Msa0721650-mRNA-1:cds;Parent=Msa0721650-mRNA-1
chr5_1 CDS 18562263 18562394 18562263 ID=Msa0721650-mRNA-1:cds;Parent=Msa0721650-mRNA-1
chr5_1 CDS 18561347 18561412 18561347 ID=Msa0721650-mRNA-1:cds;Parent=Msa0721650-mRNA-1
chr5_1 CDS 18561176 18561240 18561176 ID=Msa0721650-mRNA-1:cds;Parent=Msa0721650-mRNA-1
chr5_1 CDS 18560694 18560785 18560694 ID=Msa0721650-mRNA-1:cds;Parent=Msa0721650-mRNA-1
chr5_1 CDS 18560424 18560580 18560424 ID=Msa0721650-mRNA-1:cds;Parent=Msa0721650-mRNA-1
chr5_1 CDS 18559382 18559511 18559382 ID=Msa0721650-mRNA-1:cds;Parent=Msa0721650-mRNA-1
chr5_1 three_prime_UTR 18558905 18559381 18558905 ID=Msa0721650-mRNA-1:three_prime_utr;Parent=Msa0721650-mRNA-1
Gene Sequence

>Msa0721650

ATGCCACCAAAGCCCTTAGACTATGAGTCGATTAATGAAAACGTGAAGAAGGCTCAGTATGCTGTCAGAGGTGAATTATACCTTCGAGCTACCGAGCTTCAGAAGGAGGGCAAAAAGATTATATTCACTAATGTTGGAAACCCACATGCTTTGGGACAGAAACCACTGACCTTCCCTCGCCAGGTTGTTGCTTTGTGCCAGGCTCCATTCCTACTTGATGATCCTAACGTTGGACTGCTATTCCCAGCTGATGCAATTGCAAGAGCTAAGCAGTATCTCTCATTCACATCTGGTGGTTTAGGTGCTTATAGTGATTCTCGAGGCACTCCGGCAGTGAGGAAGGAAGTGGCAGAGTTTATACAGAGGCGTGATGGTTATCCGAGTGATCCAGAGTTCATCTATCTTACTGACGGTGCGAGCAAGGCTGTGATGCAGATATTAAATACTATCATCAGAGGCGAAGGAGATGGGATTATGGTTCCAGTCCCACAATACCCACTTTACTCTGCAACAATTGCTCTTCTTGGGGGTACTCTTGTTCCATACTACCTTGAAGAGACAGCAAATTGGGGTCTTGATACTAATGAACTTCGAAAATCAGTTAGAGAGGCTCGCTATAAAGGATTAACTGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTAGTGAAGAGAATTTAAGAGAGGTTTTGCAATTTTGTTATGAAGAAAATTTAGTCTTGCTTGGAGATGAGGTTTACCAGACGAATATATATCAGGATGAGCGACCCTTCATTAGTGCCAAAAAGGTTTTGATGGATATGGGGCCACCTTTAAGCAAGGAAGTCCAGCTTGTTTCTTTTCACTCGGTGTCAAAAGGGTATTTTGGTGAATGTGGACAACGTGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGACAGTTGATGAGATCTATAAAGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTATGGGACTAATGATCAATCCACCCAAACCTGGAGATATTTCTTACGACCAATTTGTTAGGGAGAGCAAAGGAATACTTGAATCACTAAGAAGAAGAGCAAGGATCATGACTGATGGATTCAACAGCTGCAGGAATGTTGTTTGCAATTTCACAGAAGGTGCCATGTATTCATTCCCTCAAATAAAACTGCCACCAAAAGCTTTAGAGACTGCTAAACAGGCTGGAAAAGCTGCAGATGTTTACTACTGTCTCAAGCTTTTGGAAGCCACTGGCATATCCACTGTTCCTGGCTCAGGATTTGGACAGAAAGAAGGGGTTTTCCATTTGAGGACAACTATATTACCAGCTGAGGAAGAAATGCCTGCTATTATGGATAGTTTCAAAAAGTTCAATGATGATTTCATGGAACAATATGACGACCACAGAGGTTATTCAAGGTTGTAA

Protein sequence

>Msa0721650

MPPKPLDYESINENVKKAQYAVRGELYLRATELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIARAKQYLSFTSGGLGAYSDSRGTPAVRKEVAEFIQRRDGYPSDPEFIYLTDGASKAVMQILNTIIRGEGDGIMVPVPQYPLYSATIALLGGTLVPYYLEETANWGLDTNELRKSVREARYKGLTVKAMVIINPGNPTGQCLSEENLREVLQFCYEENLVLLGDEVYQTNIYQDERPFISAKKVLMDMGPPLSKEVQLVSFHSVSKGYFGECGQRGGYFEMTNIPPETVDEIYKVASISLSPNVPAQIFMGLMINPPKPGDISYDQFVRESKGILESLRRRARIMTDGFNSCRNVVCNFTEGAMYSFPQIKLPPKALETAKQAGKAADVYYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEEMPAIMDSFKKFNDDFMEQYDDHRGYSRL*