Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023610 | Msa0722510 | 0.808588 | 2.876625e-50 | -8.615850e-47 |
| Msa0627410 | Msa0722510 | 0.803091 | 4.113610e-49 | -8.615850e-47 |
| Msa0636170 | Msa0722510 | 0.812000 | 5.283714e-51 | -8.615850e-47 |
| Msa0675510 | Msa0722510 | 0.818300 | 2.106010e-52 | -8.615850e-47 |
| Msa0722510 | Msa0733290 | 0.807909 | 4.014923e-50 | -8.615850e-47 |
| Msa0722510 | Msa0743810 | 0.809389 | 1.938365e-50 | -8.615850e-47 |
| Msa0722510 | Msa0745060 | 0.806271 | 8.922019e-50 | -8.615850e-47 |
| Msa0722510 | Msa0825860 | 0.801430 | 9.036682e-49 | -8.615850e-47 |
| Msa0722510 | Msa0888370 | 0.800118 | 1.674434e-48 | -8.615850e-47 |
| Msa0722510 | Msa1024240 | 0.803063 | 4.167346e-49 | -8.615850e-47 |
| Msa0722510 | Msa1092990 | 0.823093 | 1.667384e-53 | -8.615850e-47 |
| Msa0722510 | Msa1178720 | 0.805286 | 1.436273e-49 | -8.615850e-47 |
| Msa0722510 | Msa1187940 | 0.819394 | 1.188755e-52 | -8.615850e-47 |
| Msa0722510 | Msa1269670 | 0.807374 | 5.215553e-50 | -8.615850e-47 |
| Msa0722510 | Msa1270270 | 0.808425 | 3.116890e-50 | -8.615850e-47 |
| Msa0722510 | Msa1297210 | 0.805570 | 1.252142e-49 | -8.615850e-47 |
| Msa0722510 | Msa1340590 | 0.803843 | 2.872939e-49 | -8.615850e-47 |
| Msa0722510 | Msa1463140 | 0.813520 | 2.455516e-51 | -8.615850e-47 |
| Msa0153200 | Msa0722510 | 0.812885 | 3.384263e-51 | -8.615850e-47 |
| Msa0232850 | Msa0722510 | 0.801405 | 9.145700e-49 | -8.615850e-47 |
| Msa0548060 | Msa0722510 | 0.815458 | 9.148316e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722510 | MtrunA17_Chr5g0412791 | 33.775 | 151 | 57 | 2 | 47 | 158 | 24 | 170 | 1.26e-14 | 68.2 |
| Msa0722510 | MtrunA17_Chr5g0412781 | 42.478 | 113 | 44 | 4 | 12 | 124 | 2 | 93 | 1.78e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGTGAGGCTAGTGATTT+TGG | 0.211916 | 5_1:-19795799 | None:intergenic |
| AGTGACATTGTCTTTAATAA+TGG | 0.307231 | 5_1:-19796538 | None:intergenic |
| TTGATCTCGGCGGGAGGAGG+AGG | 0.318515 | 5_1:-19795675 | None:intergenic |
| CTCCTAAAAGCCGGGATATC+TGG | 0.319313 | 5_1:+19795909 | Msa0722510:CDS |
| GGGTTGATCTCGGCGGGAGG+AGG | 0.364576 | 5_1:-19795678 | None:intergenic |
| AGACAATGTCACTAATCTTA+AGG | 0.409858 | 5_1:+19796548 | Msa0722510:CDS |
| AGCTGACCTATCTAAAGTTC+AGG | 0.439442 | 5_1:-19797086 | None:intergenic |
| ATCTCGGCGGGAGGAGGAGG+AGG | 0.443561 | 5_1:-19795672 | None:intergenic |
| TGCCGTTTGATTTGTTTCGC+AGG | 0.452538 | 5_1:-19795603 | None:intergenic |
| AATCAGGGTCTTAAAGGCAT+TGG | 0.457749 | 5_1:+19797039 | Msa0722510:intron |
| ATAATGGAAGATTTAGCTCT+CGG | 0.459787 | 5_1:-19796522 | None:intergenic |
| GTCAGAGAGTCGAGCTATCT+CGG | 0.463662 | 5_1:-19795823 | None:intergenic |
| AACAAATCAAACGGCAAAGC+AGG | 0.465443 | 5_1:+19795610 | Msa0722510:CDS |
| TAATGGAAGATTTAGCTCTC+GGG | 0.471309 | 5_1:-19796521 | None:intergenic |
| GCCTATCCGACGATGAGAAA+TGG | 0.472599 | 5_1:+19795883 | Msa0722510:CDS |
| TGGTAATCAGATAAGTCGTC+GGG | 0.476054 | 5_1:-19795699 | None:intergenic |
| CTACGACTGCATATATCAAC+CGG | 0.489447 | 5_1:+19795746 | Msa0722510:CDS |
| GCCGTTTGATTTGTTTCGCA+GGG | 0.492829 | 5_1:-19795602 | None:intergenic |
| GTCGGATAGGCGAGATAACT+CGG | 0.496850 | 5_1:-19795871 | None:intergenic |
| TCTGACTCTGACCCCTTCTC+CGG | 0.506547 | 5_1:+19795636 | Msa0722510:CDS |
| AGAGCTCGATACCGCATCGC+CGG | 0.515769 | 5_1:-19795946 | None:intergenic |
| GAGAGAGGTATGCCGGAGAA+GGG | 0.516674 | 5_1:-19795648 | None:intergenic |
| TAAGTCGTCGGGGTTGATCT+CGG | 0.518568 | 5_1:-19795688 | None:intergenic |
| AGAGAGAGGTATGCCGGAGA+AGG | 0.520961 | 5_1:-19795649 | None:intergenic |
| AAATGGCGCCTCCTAAAAGC+CGG | 0.523334 | 5_1:+19795900 | Msa0722510:CDS |
| AGGAGGAGAGAGAGGTATGC+CGG | 0.526464 | 5_1:-19795655 | None:intergenic |
| ACCCTGCGAAACAAATCAAA+CGG | 0.533701 | 5_1:+19795601 | Msa0722510:CDS |
| TCGTCGGGGTTGATCTCGGC+GGG | 0.533974 | 5_1:-19795684 | None:intergenic |
| ATCGAAGAATCCAGATATCC+CGG | 0.547503 | 5_1:-19795919 | None:intergenic |
| TCTGGATTCTTCGATGGCGC+CGG | 0.565163 | 5_1:+19795927 | Msa0722510:CDS |
| TTGGCGAGAGCACGAACGGC+CGG | 0.574931 | 5_1:-19795765 | None:intergenic |
| TTGGTAATCAGATAAGTCGT+CGG | 0.575223 | 5_1:-19795700 | None:intergenic |
| AATGGCGCCTCCTAAAAGCC+GGG | 0.580459 | 5_1:+19795901 | Msa0722510:CDS |
| AGAGAGGTATGCCGGAGAAG+GGG | 0.581551 | 5_1:-19795647 | None:intergenic |
| TGAGAGCGAGAGCAAAGAGT+TGG | 0.581769 | 5_1:-19795719 | None:intergenic |
| TCGGGGTTGATCTCGGCGGG+AGG | 0.582444 | 5_1:-19795681 | None:intergenic |
| TAGCTCGACTCTCTGACGAC+AGG | 0.582800 | 5_1:+19795829 | Msa0722510:CDS |
| GGGATATCTGGATTCTTCGA+TGG | 0.587585 | 5_1:+19795921 | Msa0722510:CDS |
| CGACTCTCTGACGACAGGAT+AGG | 0.597797 | 5_1:+19795834 | Msa0722510:CDS |
| AACCGACCTGAACTTTAGAT+AGG | 0.598301 | 5_1:+19797080 | Msa0722510:CDS |
| CTTCGATGGCGCCGGCGATG+CGG | 0.599558 | 5_1:+19795935 | Msa0722510:CDS |
| GATATTGGCGAGAGCACGAA+CGG | 0.609850 | 5_1:-19795769 | None:intergenic |
| GCCATTTCTCATCGTCGGAT+AGG | 0.610402 | 5_1:-19795884 | None:intergenic |
| AATGGAAGATTTAGCTCTCG+GGG | 0.631191 | 5_1:-19796520 | None:intergenic |
| GACCTATCTAAAGTTCAGGT+CGG | 0.646163 | 5_1:-19797082 | None:intergenic |
| GAGGCGCCATTTCTCATCGT+CGG | 0.649793 | 5_1:-19795889 | None:intergenic |
| TGGAAGATTTAGCTCTCGGG+GGG | 0.650846 | 5_1:-19796518 | None:intergenic |
| GTCGTCGGGGTTGATCTCGG+CGG | 0.660840 | 5_1:-19795685 | None:intergenic |
| GGAAGATTTAGCTCTCGGGG+GGG | 0.686382 | 5_1:-19796517 | None:intergenic |
| ATTGGAGAAATCTACAATCG+AGG | 0.688959 | 5_1:+19797057 | Msa0722510:CDS |
| ATGGAAGATTTAGCTCTCGG+GGG | 0.720706 | 5_1:-19796519 | None:intergenic |
| GAGCTATCTCGGTTTCAGTG+AGG | 0.730333 | 5_1:-19795812 | None:intergenic |
| GGTAATCAGATAAGTCGTCG+GGG | 0.750834 | 5_1:-19795698 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTGTTATTATTATTATT+AGG | + | chr5_1:19796333-19796352 | Msa0722510:intron | 10.0% |
| !!! | TGTTGTTATTATTATTATTA+GGG | + | chr5_1:19796334-19796353 | Msa0722510:intron | 10.0% |
| !!! | GTATTTTTCTTTTTAAATAA+TGG | + | chr5_1:19796746-19796765 | Msa0722510:intron | 10.0% |
| !!! | TATTTGTTAAATTTCAAATT+TGG | - | chr5_1:19796996-19797015 | None:intergenic | 10.0% |
| !!! | TTGTTGTTATTATTATTATT+AGG | + | chr5_1:19796333-19796352 | Msa0722510:intron | 10.0% |
| !!! | TGTTGTTATTATTATTATTA+GGG | + | chr5_1:19796334-19796353 | Msa0722510:intron | 10.0% |
| !!! | GTATTTTTCTTTTTAAATAA+TGG | + | chr5_1:19796746-19796765 | Msa0722510:intron | 10.0% |
| !!! | TATTTGTTAAATTTCAAATT+TGG | - | chr5_1:19796996-19797015 | None:intergenic | 10.0% |
| !!! | ATTATTATTATTTTGGTGTT+AGG | + | chr5_1:19796426-19796445 | Msa0722510:intron | 15.0% |
| !!! | ATTATTATTATTTTGGTGTT+AGG | + | chr5_1:19796426-19796445 | Msa0722510:intron | 15.0% |
| !!! | TTTTTTAACAGTAACAAGTT+TGG | + | chr5_1:19796903-19796922 | Msa0722510:intron | 20.0% |
| !! | AAATTTCAAATTTGGAAAGT+AGG | - | chr5_1:19796988-19797007 | None:intergenic | 20.0% |
| !!! | TTTTTTAACAGTAACAAGTT+TGG | + | chr5_1:19796903-19796922 | Msa0722510:intron | 20.0% |
| !! | AAATTTCAAATTTGGAAAGT+AGG | - | chr5_1:19796988-19797007 | None:intergenic | 20.0% |
| ! | TTTGAAAAACATCATCAATG+GGG | - | chr5_1:19796063-19796082 | None:intergenic | 25.0% |
| !! | CTTTGAAAAACATCATCAAT+GGG | - | chr5_1:19796064-19796083 | None:intergenic | 25.0% |
| ! | ATGAGTAAAAAAATTGTGAG+AGG | - | chr5_1:19796393-19796412 | None:intergenic | 25.0% |
| ! | AGTGACATTGTCTTTAATAA+TGG | - | chr5_1:19796541-19796560 | None:intergenic | 25.0% |
| !! | GAAATGATGTTTTCAAATCA+GGG | + | chr5_1:19797024-19797043 | Msa0722510:intron | 25.0% |
| ! | TTTGAAAAACATCATCAATG+GGG | - | chr5_1:19796063-19796082 | None:intergenic | 25.0% |
| !! | CTTTGAAAAACATCATCAAT+GGG | - | chr5_1:19796064-19796083 | None:intergenic | 25.0% |
| ! | ATGAGTAAAAAAATTGTGAG+AGG | - | chr5_1:19796393-19796412 | None:intergenic | 25.0% |
| ! | AGTGACATTGTCTTTAATAA+TGG | - | chr5_1:19796541-19796560 | None:intergenic | 25.0% |
| !! | GAAATGATGTTTTCAAATCA+GGG | + | chr5_1:19797024-19797043 | Msa0722510:intron | 25.0% |
| ! | CCTTTGAAAAACATCATCAA+TGG | - | chr5_1:19796065-19796084 | None:intergenic | 30.0% |
| !!! | CCATTGATGATGTTTTTCAA+AGG | + | chr5_1:19796062-19796081 | Msa0722510:intron | 30.0% |
| TGACAAGGATAACTAAAGAA+AGG | - | chr5_1:19796264-19796283 | None:intergenic | 30.0% | |
| AATCAGTATCATGATCAAAG+AGG | + | chr5_1:19796288-19796307 | Msa0722510:intron | 30.0% | |
| !!! | TATCTTTGTTTTTGTCCTAG+TGG | + | chr5_1:19796490-19796509 | Msa0722510:intron | 30.0% |
| !! | ATAATGGAAGATTTAGCTCT+CGG | - | chr5_1:19796525-19796544 | None:intergenic | 30.0% |
| AGACAATGTCACTAATCTTA+AGG | + | chr5_1:19796548-19796567 | Msa0722510:CDS | 30.0% | |
| TCAAACTATAAGGTTCTGTT+TGG | - | chr5_1:19796653-19796672 | None:intergenic | 30.0% | |
| GCGCATTGTAATTTAAAAGT+CGG | - | chr5_1:19796677-19796696 | None:intergenic | 30.0% | |
| ATCTTTCCTTATTCTTCTGT+TGG | + | chr5_1:19796700-19796719 | Msa0722510:intron | 30.0% | |
| ATAACACCAACAGAAGAATA+AGG | - | chr5_1:19796709-19796728 | None:intergenic | 30.0% | |
| ! | CGAAATGATGTTTTCAAATC+AGG | + | chr5_1:19797023-19797042 | Msa0722510:intron | 30.0% |
| ! | TTTTCAAATCAGGGTCTTAA+AGG | + | chr5_1:19797033-19797052 | Msa0722510:intron | 30.0% |
| ! | CCTTTGAAAAACATCATCAA+TGG | - | chr5_1:19796065-19796084 | None:intergenic | 30.0% |
| !!! | CCATTGATGATGTTTTTCAA+AGG | + | chr5_1:19796062-19796081 | Msa0722510:intron | 30.0% |
| TGACAAGGATAACTAAAGAA+AGG | - | chr5_1:19796264-19796283 | None:intergenic | 30.0% | |
| AATCAGTATCATGATCAAAG+AGG | + | chr5_1:19796288-19796307 | Msa0722510:intron | 30.0% | |
| !!! | TATCTTTGTTTTTGTCCTAG+TGG | + | chr5_1:19796490-19796509 | Msa0722510:intron | 30.0% |
| !! | ATAATGGAAGATTTAGCTCT+CGG | - | chr5_1:19796525-19796544 | None:intergenic | 30.0% |
| AGACAATGTCACTAATCTTA+AGG | + | chr5_1:19796548-19796567 | Msa0722510:CDS | 30.0% | |
| TCAAACTATAAGGTTCTGTT+TGG | - | chr5_1:19796653-19796672 | None:intergenic | 30.0% | |
| GCGCATTGTAATTTAAAAGT+CGG | - | chr5_1:19796677-19796696 | None:intergenic | 30.0% | |
| ATCTTTCCTTATTCTTCTGT+TGG | + | chr5_1:19796700-19796719 | Msa0722510:intron | 30.0% | |
| ATAACACCAACAGAAGAATA+AGG | - | chr5_1:19796709-19796728 | None:intergenic | 30.0% | |
| ! | CGAAATGATGTTTTCAAATC+AGG | + | chr5_1:19797023-19797042 | Msa0722510:intron | 30.0% |
| ! | TTTTCAAATCAGGGTCTTAA+AGG | + | chr5_1:19797033-19797052 | Msa0722510:intron | 30.0% |
| ! | TTGGTAATCAGATAAGTCGT+CGG | - | chr5_1:19795703-19795722 | None:intergenic | 35.0% |
| !!! | GATTTTGGTTGCAACGATAT+TGG | - | chr5_1:19795787-19795806 | None:intergenic | 35.0% |
| AGCTACTGAAAAACTAGTTC+CGG | + | chr5_1:19795971-19795990 | Msa0722510:intron | 35.0% | |
| ! | TGATACTGATTACGATGACA+AGG | - | chr5_1:19796279-19796298 | None:intergenic | 35.0% |
| !!! | ATTTTTTTCCCCTGAGCTAA+CGG | + | chr5_1:19796449-19796468 | Msa0722510:intron | 35.0% |
| AAAATAACACCGTTAGCTCA+GGG | - | chr5_1:19796461-19796480 | None:intergenic | 35.0% | |
| !! | TAATGGAAGATTTAGCTCTC+GGG | - | chr5_1:19796524-19796543 | None:intergenic | 35.0% |
| ATAAACATCAAGACAACCAC+AGG | - | chr5_1:19796592-19796611 | None:intergenic | 35.0% | |
| TGTTTGACAGTCGTACAATT+CGG | - | chr5_1:19796619-19796638 | None:intergenic | 35.0% | |
| ! | AAAAGTCGGCTCAAACTATA+AGG | - | chr5_1:19796663-19796682 | None:intergenic | 35.0% |
| GCTGTCATCATGTGTTAATT+TGG | + | chr5_1:19796925-19796944 | Msa0722510:intron | 35.0% | |
| ATTGGAGAAATCTACAATCG+AGG | + | chr5_1:19797057-19797076 | Msa0722510:CDS | 35.0% | |
| ! | TTGGTAATCAGATAAGTCGT+CGG | - | chr5_1:19795703-19795722 | None:intergenic | 35.0% |
| !!! | GATTTTGGTTGCAACGATAT+TGG | - | chr5_1:19795787-19795806 | None:intergenic | 35.0% |
| AGCTACTGAAAAACTAGTTC+CGG | + | chr5_1:19795971-19795990 | Msa0722510:intron | 35.0% | |
| ! | TGATACTGATTACGATGACA+AGG | - | chr5_1:19796279-19796298 | None:intergenic | 35.0% |
| !!! | ATTTTTTTCCCCTGAGCTAA+CGG | + | chr5_1:19796449-19796468 | Msa0722510:intron | 35.0% |
| AAAATAACACCGTTAGCTCA+GGG | - | chr5_1:19796461-19796480 | None:intergenic | 35.0% | |
| !! | TAATGGAAGATTTAGCTCTC+GGG | - | chr5_1:19796524-19796543 | None:intergenic | 35.0% |
| ATAAACATCAAGACAACCAC+AGG | - | chr5_1:19796592-19796611 | None:intergenic | 35.0% | |
| TGTTTGACAGTCGTACAATT+CGG | - | chr5_1:19796619-19796638 | None:intergenic | 35.0% | |
| ! | AAAAGTCGGCTCAAACTATA+AGG | - | chr5_1:19796663-19796682 | None:intergenic | 35.0% |
| GCTGTCATCATGTGTTAATT+TGG | + | chr5_1:19796925-19796944 | Msa0722510:intron | 35.0% | |
| ATTGGAGAAATCTACAATCG+AGG | + | chr5_1:19797057-19797076 | Msa0722510:CDS | 35.0% | |
| ACCCTGCGAAACAAATCAAA+CGG | + | chr5_1:19795601-19795620 | Msa0722510:CDS | 40.0% | |
| AACAAATCAAACGGCAAAGC+AGG | + | chr5_1:19795610-19795629 | Msa0722510:CDS | 40.0% | |
| TGGTAATCAGATAAGTCGTC+GGG | - | chr5_1:19795702-19795721 | None:intergenic | 40.0% | |
| CTACGACTGCATATATCAAC+CGG | + | chr5_1:19795746-19795765 | Msa0722510:CDS | 40.0% | |
| ! | TTCAGTGAGGCTAGTGATTT+TGG | - | chr5_1:19795802-19795821 | None:intergenic | 40.0% |
| ATCGAAGAATCCAGATATCC+CGG | - | chr5_1:19795922-19795941 | None:intergenic | 40.0% | |
| !! | GGCTTTTTCTATACTGAAGC+TGG | + | chr5_1:19796083-19796102 | Msa0722510:intron | 40.0% |
| AAATAACACCGTTAGCTCAG+GGG | - | chr5_1:19796460-19796479 | None:intergenic | 40.0% | |
| GAAAATAACACCGTTAGCTC+AGG | - | chr5_1:19796462-19796481 | None:intergenic | 40.0% | |
| !! | AATGGAAGATTTAGCTCTCG+GGG | - | chr5_1:19796523-19796542 | None:intergenic | 40.0% |
| ATTAACTTACTGCTTGCCTG+TGG | + | chr5_1:19796573-19796592 | Msa0722510:intron | 40.0% | |
| TACGACTGTCAAACAAGAAG+CGG | + | chr5_1:19796624-19796643 | Msa0722510:intron | 40.0% | |
| TAGAACAACACCTTGAGATC+TGG | - | chr5_1:19796858-19796877 | None:intergenic | 40.0% | |
| ! | AATCAGGGTCTTAAAGGCAT+TGG | + | chr5_1:19797039-19797058 | Msa0722510:intron | 40.0% |
| ACCCTGCGAAACAAATCAAA+CGG | + | chr5_1:19795601-19795620 | Msa0722510:CDS | 40.0% | |
| AACAAATCAAACGGCAAAGC+AGG | + | chr5_1:19795610-19795629 | Msa0722510:CDS | 40.0% | |
| TGGTAATCAGATAAGTCGTC+GGG | - | chr5_1:19795702-19795721 | None:intergenic | 40.0% | |
| CTACGACTGCATATATCAAC+CGG | + | chr5_1:19795746-19795765 | Msa0722510:CDS | 40.0% | |
| ! | TTCAGTGAGGCTAGTGATTT+TGG | - | chr5_1:19795802-19795821 | None:intergenic | 40.0% |
| ATCGAAGAATCCAGATATCC+CGG | - | chr5_1:19795922-19795941 | None:intergenic | 40.0% | |
| !! | GGCTTTTTCTATACTGAAGC+TGG | + | chr5_1:19796083-19796102 | Msa0722510:intron | 40.0% |
| AAATAACACCGTTAGCTCAG+GGG | - | chr5_1:19796460-19796479 | None:intergenic | 40.0% | |
| GAAAATAACACCGTTAGCTC+AGG | - | chr5_1:19796462-19796481 | None:intergenic | 40.0% | |
| !! | AATGGAAGATTTAGCTCTCG+GGG | - | chr5_1:19796523-19796542 | None:intergenic | 40.0% |
| ATTAACTTACTGCTTGCCTG+TGG | + | chr5_1:19796573-19796592 | Msa0722510:intron | 40.0% | |
| TACGACTGTCAAACAAGAAG+CGG | + | chr5_1:19796624-19796643 | Msa0722510:intron | 40.0% | |
| TAGAACAACACCTTGAGATC+TGG | - | chr5_1:19796858-19796877 | None:intergenic | 40.0% | |
| ! | AATCAGGGTCTTAAAGGCAT+TGG | + | chr5_1:19797039-19797058 | Msa0722510:intron | 40.0% |
| !! | GCCGTTTGATTTGTTTCGCA+GGG | - | chr5_1:19795605-19795624 | None:intergenic | 45.0% |
| !! | TGCCGTTTGATTTGTTTCGC+AGG | - | chr5_1:19795606-19795625 | None:intergenic | 45.0% |
| GGTAATCAGATAAGTCGTCG+GGG | - | chr5_1:19795701-19795720 | None:intergenic | 45.0% | |
| ! | ATCCAGATATCCCGGCTTTT+AGG | - | chr5_1:19795914-19795933 | None:intergenic | 45.0% |
| GGGATATCTGGATTCTTCGA+TGG | + | chr5_1:19795921-19795940 | Msa0722510:CDS | 45.0% | |
| ! | TCCGGATTTCGCTACTGTTT+TGG | + | chr5_1:19795989-19796008 | Msa0722510:intron | 45.0% |
| GCCAAAACAGTAGCGAAATC+CGG | - | chr5_1:19795993-19796012 | None:intergenic | 45.0% | |
| !! | ATGGAAGATTTAGCTCTCGG+GGG | - | chr5_1:19796522-19796541 | None:intergenic | 45.0% |
| TACTCTGTCTCCAGATCTCA+AGG | + | chr5_1:19796845-19796864 | Msa0722510:intron | 45.0% | |
| !! | GCCGTTTGATTTGTTTCGCA+GGG | - | chr5_1:19795605-19795624 | None:intergenic | 45.0% |
| !! | TGCCGTTTGATTTGTTTCGC+AGG | - | chr5_1:19795606-19795625 | None:intergenic | 45.0% |
| GGTAATCAGATAAGTCGTCG+GGG | - | chr5_1:19795701-19795720 | None:intergenic | 45.0% | |
| ! | ATCCAGATATCCCGGCTTTT+AGG | - | chr5_1:19795914-19795933 | None:intergenic | 45.0% |
| GGGATATCTGGATTCTTCGA+TGG | + | chr5_1:19795921-19795940 | Msa0722510:CDS | 45.0% | |
| ! | TCCGGATTTCGCTACTGTTT+TGG | + | chr5_1:19795989-19796008 | Msa0722510:intron | 45.0% |
| GCCAAAACAGTAGCGAAATC+CGG | - | chr5_1:19795993-19796012 | None:intergenic | 45.0% | |
| !! | ATGGAAGATTTAGCTCTCGG+GGG | - | chr5_1:19796522-19796541 | None:intergenic | 45.0% |
| TACTCTGTCTCCAGATCTCA+AGG | + | chr5_1:19796845-19796864 | Msa0722510:intron | 45.0% | |
| !!! | GATATATATTATTATTATTT+TGG | + | chr5_1:19796419-19796438 | Msa0722510:intron | 5.0% |
| !! | ATGTTAATTAATTAAAATTT+AGG | + | chr5_1:19796773-19796792 | Msa0722510:intron | 5.0% |
| !!! | GATATATATTATTATTATTT+TGG | + | chr5_1:19796419-19796438 | Msa0722510:intron | 5.0% |
| !! | ATGTTAATTAATTAAAATTT+AGG | + | chr5_1:19796773-19796792 | Msa0722510:intron | 5.0% |
| ! | TAAGTCGTCGGGGTTGATCT+CGG | - | chr5_1:19795691-19795710 | None:intergenic | 50.0% |
| TGAGAGCGAGAGCAAAGAGT+TGG | - | chr5_1:19795722-19795741 | None:intergenic | 50.0% | |
| ! | GATATTGGCGAGAGCACGAA+CGG | - | chr5_1:19795772-19795791 | None:intergenic | 50.0% |
| GAGCTATCTCGGTTTCAGTG+AGG | - | chr5_1:19795815-19795834 | None:intergenic | 50.0% | |
| GTCAGAGAGTCGAGCTATCT+CGG | - | chr5_1:19795826-19795845 | None:intergenic | 50.0% | |
| GTCGGATAGGCGAGATAACT+CGG | - | chr5_1:19795874-19795893 | None:intergenic | 50.0% | |
| GCCTATCCGACGATGAGAAA+TGG | + | chr5_1:19795883-19795902 | Msa0722510:CDS | 50.0% | |
| GCCATTTCTCATCGTCGGAT+AGG | - | chr5_1:19795887-19795906 | None:intergenic | 50.0% | |
| AAATGGCGCCTCCTAAAAGC+CGG | + | chr5_1:19795900-19795919 | Msa0722510:CDS | 50.0% | |
| ! | CAGATATCCCGGCTTTTAGG+AGG | - | chr5_1:19795911-19795930 | None:intergenic | 50.0% |
| CTCCTAAAAGCCGGGATATC+TGG | + | chr5_1:19795909-19795928 | Msa0722510:CDS | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr5_1:19796114-19796133 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr5_1:19796113-19796132 | None:intergenic | 50.0% | |
| CTCTCTCTCTCTCTCAAGCA+CGG | + | chr5_1:19796179-19796198 | Msa0722510:intron | 50.0% | |
| !! | TGGAAGATTTAGCTCTCGGG+GGG | - | chr5_1:19796521-19796540 | None:intergenic | 50.0% |
| ! | TAAGTCGTCGGGGTTGATCT+CGG | - | chr5_1:19795691-19795710 | None:intergenic | 50.0% |
| TGAGAGCGAGAGCAAAGAGT+TGG | - | chr5_1:19795722-19795741 | None:intergenic | 50.0% | |
| ! | GATATTGGCGAGAGCACGAA+CGG | - | chr5_1:19795772-19795791 | None:intergenic | 50.0% |
| GAGCTATCTCGGTTTCAGTG+AGG | - | chr5_1:19795815-19795834 | None:intergenic | 50.0% | |
| GTCAGAGAGTCGAGCTATCT+CGG | - | chr5_1:19795826-19795845 | None:intergenic | 50.0% | |
| GTCGGATAGGCGAGATAACT+CGG | - | chr5_1:19795874-19795893 | None:intergenic | 50.0% | |
| GCCTATCCGACGATGAGAAA+TGG | + | chr5_1:19795883-19795902 | Msa0722510:CDS | 50.0% | |
| GCCATTTCTCATCGTCGGAT+AGG | - | chr5_1:19795887-19795906 | None:intergenic | 50.0% | |
| AAATGGCGCCTCCTAAAAGC+CGG | + | chr5_1:19795900-19795919 | Msa0722510:CDS | 50.0% | |
| ! | CAGATATCCCGGCTTTTAGG+AGG | - | chr5_1:19795911-19795930 | None:intergenic | 50.0% |
| CTCCTAAAAGCCGGGATATC+TGG | + | chr5_1:19795909-19795928 | Msa0722510:CDS | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr5_1:19796114-19796133 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr5_1:19796113-19796132 | None:intergenic | 50.0% | |
| CTCTCTCTCTCTCTCAAGCA+CGG | + | chr5_1:19796179-19796198 | Msa0722510:intron | 50.0% | |
| !! | TGGAAGATTTAGCTCTCGGG+GGG | - | chr5_1:19796521-19796540 | None:intergenic | 50.0% |
| TCTGACTCTGACCCCTTCTC+CGG | + | chr5_1:19795636-19795655 | Msa0722510:CDS | 55.0% | |
| ! | AGAGAGGTATGCCGGAGAAG+GGG | - | chr5_1:19795650-19795669 | None:intergenic | 55.0% |
| ! | GAGAGAGGTATGCCGGAGAA+GGG | - | chr5_1:19795651-19795670 | None:intergenic | 55.0% |
| ! | AGAGAGAGGTATGCCGGAGA+AGG | - | chr5_1:19795652-19795671 | None:intergenic | 55.0% |
| ! | AGGAGGAGAGAGAGGTATGC+CGG | - | chr5_1:19795658-19795677 | None:intergenic | 55.0% |
| TAGCTCGACTCTCTGACGAC+AGG | + | chr5_1:19795829-19795848 | Msa0722510:CDS | 55.0% | |
| CGACTCTCTGACGACAGGAT+AGG | + | chr5_1:19795834-19795853 | Msa0722510:CDS | 55.0% | |
| ! | GAGGCGCCATTTCTCATCGT+CGG | - | chr5_1:19795892-19795911 | None:intergenic | 55.0% |
| AATGGCGCCTCCTAAAAGCC+GGG | + | chr5_1:19795901-19795920 | Msa0722510:CDS | 55.0% | |
| TCTGGATTCTTCGATGGCGC+CGG | + | chr5_1:19795927-19795946 | Msa0722510:CDS | 55.0% | |
| !! | GGAAGATTTAGCTCTCGGGG+GGG | - | chr5_1:19796520-19796539 | None:intergenic | 55.0% |
| TCTGACTCTGACCCCTTCTC+CGG | + | chr5_1:19795636-19795655 | Msa0722510:CDS | 55.0% | |
| ! | AGAGAGGTATGCCGGAGAAG+GGG | - | chr5_1:19795650-19795669 | None:intergenic | 55.0% |
| ! | GAGAGAGGTATGCCGGAGAA+GGG | - | chr5_1:19795651-19795670 | None:intergenic | 55.0% |
| ! | AGAGAGAGGTATGCCGGAGA+AGG | - | chr5_1:19795652-19795671 | None:intergenic | 55.0% |
| ! | AGGAGGAGAGAGAGGTATGC+CGG | - | chr5_1:19795658-19795677 | None:intergenic | 55.0% |
| TAGCTCGACTCTCTGACGAC+AGG | + | chr5_1:19795829-19795848 | Msa0722510:CDS | 55.0% | |
| CGACTCTCTGACGACAGGAT+AGG | + | chr5_1:19795834-19795853 | Msa0722510:CDS | 55.0% | |
| ! | GAGGCGCCATTTCTCATCGT+CGG | - | chr5_1:19795892-19795911 | None:intergenic | 55.0% |
| AATGGCGCCTCCTAAAAGCC+GGG | + | chr5_1:19795901-19795920 | Msa0722510:CDS | 55.0% | |
| TCTGGATTCTTCGATGGCGC+CGG | + | chr5_1:19795927-19795946 | Msa0722510:CDS | 55.0% | |
| !! | GGAAGATTTAGCTCTCGGGG+GGG | - | chr5_1:19796520-19796539 | None:intergenic | 55.0% |
| AGAGCTCGATACCGCATCGC+CGG | - | chr5_1:19795949-19795968 | None:intergenic | 60.0% | |
| AGAGCTCGATACCGCATCGC+CGG | - | chr5_1:19795949-19795968 | None:intergenic | 60.0% | |
| GGAGGAGGAGGAGGAGAGAG+AGG | - | chr5_1:19795666-19795685 | None:intergenic | 65.0% | |
| TTGATCTCGGCGGGAGGAGG+AGG | - | chr5_1:19795678-19795697 | None:intergenic | 65.0% | |
| ! | TCGTCGGGGTTGATCTCGGC+GGG | - | chr5_1:19795687-19795706 | None:intergenic | 65.0% |
| ! | GTCGTCGGGGTTGATCTCGG+CGG | - | chr5_1:19795688-19795707 | None:intergenic | 65.0% |
| ! | TTGGCGAGAGCACGAACGGC+CGG | - | chr5_1:19795768-19795787 | None:intergenic | 65.0% |
| TCTCGGGGGGGCAATCCACT+AGG | - | chr5_1:19796508-19796527 | None:intergenic | 65.0% | |
| GGAGGAGGAGGAGGAGAGAG+AGG | - | chr5_1:19795666-19795685 | None:intergenic | 65.0% | |
| TTGATCTCGGCGGGAGGAGG+AGG | - | chr5_1:19795678-19795697 | None:intergenic | 65.0% | |
| ! | TCGTCGGGGTTGATCTCGGC+GGG | - | chr5_1:19795687-19795706 | None:intergenic | 65.0% |
| ! | GTCGTCGGGGTTGATCTCGG+CGG | - | chr5_1:19795688-19795707 | None:intergenic | 65.0% |
| ! | TTGGCGAGAGCACGAACGGC+CGG | - | chr5_1:19795768-19795787 | None:intergenic | 65.0% |
| TCTCGGGGGGGCAATCCACT+AGG | - | chr5_1:19796508-19796527 | None:intergenic | 65.0% | |
| ATCTCGGCGGGAGGAGGAGG+AGG | - | chr5_1:19795675-19795694 | None:intergenic | 70.0% | |
| ! | GGGTTGATCTCGGCGGGAGG+AGG | - | chr5_1:19795681-19795700 | None:intergenic | 70.0% |
| ! | TCGGGGTTGATCTCGGCGGG+AGG | - | chr5_1:19795684-19795703 | None:intergenic | 70.0% |
| !! | CTTCGATGGCGCCGGCGATG+CGG | + | chr5_1:19795935-19795954 | Msa0722510:CDS | 70.0% |
| ATCTCGGCGGGAGGAGGAGG+AGG | - | chr5_1:19795675-19795694 | None:intergenic | 70.0% | |
| ! | GGGTTGATCTCGGCGGGAGG+AGG | - | chr5_1:19795681-19795700 | None:intergenic | 70.0% |
| ! | TCGGGGTTGATCTCGGCGGG+AGG | - | chr5_1:19795684-19795703 | None:intergenic | 70.0% |
| !! | CTTCGATGGCGCCGGCGATG+CGG | + | chr5_1:19795935-19795954 | Msa0722510:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 19795597 | 19797101 | 19795597 | ID=Msa0722510;Name=Msa0722510 |
| chr5_1 | mRNA | 19795597 | 19797101 | 19795597 | ID=Msa0722510-mRNA-1;Parent=Msa0722510;Name=Msa0722510-mRNA-1;_AED=0.42;_eAED=0.53;_QI=0|0|0|0.33|1|1|3|0|158 |
| chr5_1 | exon | 19795597 | 19795956 | 19795597 | ID=Msa0722510-mRNA-1:exon:7504;Parent=Msa0722510-mRNA-1 |
| chr5_1 | exon | 19796510 | 19796569 | 19796510 | ID=Msa0722510-mRNA-1:exon:7505;Parent=Msa0722510-mRNA-1 |
| chr5_1 | exon | 19797045 | 19797101 | 19797045 | ID=Msa0722510-mRNA-1:exon:7506;Parent=Msa0722510-mRNA-1 |
| chr5_1 | CDS | 19795597 | 19795956 | 19795597 | ID=Msa0722510-mRNA-1:cds;Parent=Msa0722510-mRNA-1 |
| chr5_1 | CDS | 19796510 | 19796569 | 19796510 | ID=Msa0722510-mRNA-1:cds;Parent=Msa0722510-mRNA-1 |
| chr5_1 | CDS | 19797045 | 19797101 | 19797045 | ID=Msa0722510-mRNA-1:cds;Parent=Msa0722510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
