Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232850 | AES77573.1 | 57.500 | 120 | 36 | 4 | 1 | 105 | 1 | 120 | 1.82e-23 | 98.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232850 | G7L456 | 57.500 | 120 | 36 | 4 | 1 | 105 | 1 | 120 | 8.71e-24 | 98.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013750 | Msa0232850 | 0.817436 | 3.300851e-52 | -8.615850e-47 |
| Msa0014330 | Msa0232850 | 0.819723 | 9.996579e-53 | -8.615850e-47 |
| Msa0015750 | Msa0232850 | 0.844466 | 7.428136e-59 | -8.615850e-47 |
| Msa0016570 | Msa0232850 | 0.833580 | 4.915255e-56 | -8.615850e-47 |
| Msa0016580 | Msa0232850 | 0.831238 | 1.869230e-55 | -8.615850e-47 |
| Msa0023610 | Msa0232850 | 0.801039 | 1.086629e-48 | -8.615850e-47 |
| Msa0092630 | Msa0232850 | 0.805314 | 1.417163e-49 | -8.615850e-47 |
| Msa0102070 | Msa0232850 | 0.861565 | 9.383097e-64 | -8.615850e-47 |
| Msa0107580 | Msa0232850 | 0.808792 | 2.602754e-50 | -8.615850e-47 |
| Msa0110270 | Msa0232850 | 0.832885 | 7.324163e-56 | -8.615850e-47 |
| Msa0111510 | Msa0232850 | 0.822190 | 2.704856e-53 | -8.615850e-47 |
| Msa0118050 | Msa0232850 | 0.820205 | 7.755804e-53 | -8.615850e-47 |
| Msa0118060 | Msa0232850 | 0.817868 | 2.637737e-52 | -8.615850e-47 |
| Msa0123810 | Msa0232850 | 0.847087 | 1.443234e-59 | -8.615850e-47 |
| Msa0142220 | Msa0232850 | 0.839703 | 1.351819e-57 | -8.615850e-47 |
| Msa0145750 | Msa0232850 | 0.849968 | 2.299607e-60 | -8.615850e-47 |
| Msa0153910 | Msa0232850 | 0.851615 | 7.905963e-61 | -8.615850e-47 |
| Msa0200000 | Msa0232850 | 0.838597 | 2.616236e-57 | -8.615850e-47 |
| Msa0227480 | Msa0232850 | 0.839924 | 1.184598e-57 | -8.615850e-47 |
| Msa0231000 | Msa0232850 | 0.806807 | 6.873757e-50 | -8.615850e-47 |
| Msa0232850 | Msa0235140 | 0.807730 | 4.381623e-50 | -8.615850e-47 |
| Msa0232850 | Msa0251320 | 0.803592 | 3.238868e-49 | -8.615850e-47 |
| Msa0232850 | Msa0267000 | 0.873950 | 9.880688e-68 | -8.615850e-47 |
| Msa0232850 | Msa0267010 | 0.881677 | 1.966995e-70 | -8.615850e-47 |
| Msa0232850 | Msa0270520 | 0.855233 | 7.238719e-62 | -8.615850e-47 |
| Msa0232850 | Msa0304170 | 0.830568 | 2.730061e-55 | -8.615850e-47 |
| Msa0232850 | Msa0306460 | 0.850893 | 1.264938e-60 | -8.615850e-47 |
| Msa0232850 | Msa0309020 | 0.810812 | 9.566701e-51 | -8.615850e-47 |
| Msa0232850 | Msa0311750 | 0.800658 | 1.299580e-48 | -8.615850e-47 |
| Msa0232850 | Msa0342240 | 0.869602 | 2.738873e-66 | -8.615850e-47 |
| Msa0232850 | Msa0349360 | 0.813773 | 2.159533e-51 | -8.615850e-47 |
| Msa0232850 | Msa0360510 | 0.842178 | 3.029890e-58 | -8.615850e-47 |
| Msa0232850 | Msa0362420 | 0.825212 | 5.302975e-54 | -8.615850e-47 |
| Msa0232850 | Msa0363300 | 0.814277 | 1.671816e-51 | -8.615850e-47 |
| Msa0232850 | Msa0365500 | 0.858621 | 7.264623e-63 | -8.615850e-47 |
| Msa0232850 | Msa0366580 | 0.806222 | 9.132639e-50 | -8.615850e-47 |
| Msa0232850 | Msa0384800 | 0.864724 | 9.899066e-65 | -8.615850e-47 |
| Msa0232850 | Msa0384890 | 0.827852 | 1.244119e-54 | -8.615850e-47 |
| Msa0232850 | Msa0394970 | 0.823841 | 1.114810e-53 | -8.615850e-47 |
| Msa0232850 | Msa0406120 | 0.822062 | 2.895402e-53 | -8.615850e-47 |
| Msa0232850 | Msa0414410 | 0.870494 | 1.399010e-66 | -8.615850e-47 |
| Msa0232850 | Msa0414420 | 0.878614 | 2.435874e-69 | -8.615850e-47 |
| Msa0232850 | Msa0423020 | 0.812752 | 3.619943e-51 | -8.615850e-47 |
| Msa0232850 | Msa0428010 | 0.800161 | 1.640807e-48 | -8.615850e-47 |
| Msa0232850 | Msa0435230 | 0.831415 | 1.691071e-55 | -8.615850e-47 |
| Msa0232850 | Msa0436780 | 0.847093 | 1.438209e-59 | -8.615850e-47 |
| Msa0232850 | Msa0438620 | 0.827636 | 1.402390e-54 | -8.615850e-47 |
| Msa0232850 | Msa0444130 | 0.832912 | 7.207981e-56 | -8.615850e-47 |
| Msa0232850 | Msa0450000 | 0.848928 | 4.484181e-60 | -8.615850e-47 |
| Msa0232850 | Msa0451730 | 0.829718 | 4.400556e-55 | -8.615850e-47 |
| Msa0232850 | Msa0452900 | 0.897353 | 1.526701e-76 | -8.615850e-47 |
| Msa0232850 | Msa0453120 | 0.858376 | 8.597983e-63 | -8.615850e-47 |
| Msa0232850 | Msa0454910 | 0.844794 | 6.061163e-59 | -8.615850e-47 |
| Msa0232850 | Msa0459160 | 0.831511 | 1.601254e-55 | -8.615850e-47 |
| Msa0232850 | Msa0479340 | 0.822470 | 2.328594e-53 | -8.615850e-47 |
| Msa0232850 | Msa0482620 | 0.802420 | 5.658525e-49 | -8.615850e-47 |
| Msa0232850 | Msa0485030 | 0.807231 | 5.591911e-50 | -8.615850e-47 |
| Msa0232850 | Msa0485370 | 0.804350 | 2.253827e-49 | -8.615850e-47 |
| Msa0232850 | Msa0491590 | 0.853979 | 1.669997e-61 | -8.615850e-47 |
| Msa0232850 | Msa0502760 | 0.847709 | 9.741395e-60 | -8.615850e-47 |
| Msa0232850 | Msa0503430 | 0.808422 | 3.121506e-50 | -8.615850e-47 |
| Msa0232850 | Msa0505080 | 0.812196 | 4.788200e-51 | -8.615850e-47 |
| Msa0232850 | Msa0506270 | 0.858060 | 1.067215e-62 | -8.615850e-47 |
| Msa0232850 | Msa0548060 | 0.829269 | 5.658685e-55 | -8.615850e-47 |
| Msa0232850 | Msa0564890 | 0.840498 | 8.385465e-58 | -8.615850e-47 |
| Msa0232850 | Msa0596150 | 0.844046 | 9.631804e-59 | -8.615850e-47 |
| Msa0232850 | Msa0604350 | 0.823963 | 1.043525e-53 | -8.615850e-47 |
| Msa0232850 | Msa0636170 | 0.851069 | 1.128543e-60 | -8.615850e-47 |
| Msa0232850 | Msa0639610 | 0.859237 | 4.752769e-63 | -8.615850e-47 |
| Msa0232850 | Msa0675830 | 0.803005 | 4.285724e-49 | -8.615850e-47 |
| Msa0232850 | Msa0678930 | 0.811682 | 6.196848e-51 | -8.615850e-47 |
| Msa0232850 | Msa0694370 | 0.854077 | 1.564465e-61 | -8.615850e-47 |
| Msa0232850 | Msa0722510 | 0.801405 | 9.145700e-49 | -8.615850e-47 |
| Msa0232850 | Msa0725850 | 0.825799 | 3.850023e-54 | -8.615850e-47 |
| Msa0232850 | Msa0726140 | 0.880468 | 5.356791e-70 | -8.615850e-47 |
| Msa0232850 | Msa0729800 | 0.841066 | 5.952064e-58 | -8.615850e-47 |
| Msa0232850 | Msa0732310 | 0.805437 | 1.335659e-49 | -8.615850e-47 |
| Msa0232850 | Msa0732710 | 0.827600 | 1.430826e-54 | -8.615850e-47 |
| Msa0232850 | Msa0733290 | 0.854795 | 9.702925e-62 | -8.615850e-47 |
| Msa0232850 | Msa0735080 | 0.832090 | 1.152631e-55 | -8.615850e-47 |
| Msa0232850 | Msa0738490 | 0.822611 | 2.159681e-53 | -8.615850e-47 |
| Msa0232850 | Msa0743810 | 0.929367 | 7.692452e-93 | -8.615850e-47 |
| Msa0232850 | Msa0745060 | 0.904910 | 7.484635e-80 | -8.615850e-47 |
| Msa0232850 | Msa0762360 | 0.804540 | 2.056755e-49 | -8.615850e-47 |
| Msa0232850 | Msa0766630 | 0.809676 | 1.682281e-50 | -8.615850e-47 |
| Msa0232850 | Msa0767720 | 0.854462 | 1.211509e-61 | -8.615850e-47 |
| Msa0232850 | Msa0768370 | 0.813182 | 2.913632e-51 | -8.615850e-47 |
| Msa0232850 | Msa0775300 | 0.832572 | 8.759106e-56 | -8.615850e-47 |
| Msa0232850 | Msa0777870 | 0.851202 | 1.034827e-60 | -8.615850e-47 |
| Msa0232850 | Msa0783160 | 0.883760 | 3.415140e-71 | -8.615850e-47 |
| Msa0232850 | Msa0784290 | 0.843720 | 1.178022e-58 | -8.615850e-47 |
| Msa0232850 | Msa0784300 | 0.825529 | 4.460517e-54 | -8.615850e-47 |
| Msa0232850 | Msa0787600 | 0.823915 | 1.070847e-53 | -8.615850e-47 |
| Msa0232850 | Msa0789250 | 0.819577 | 1.079517e-52 | -8.615850e-47 |
| Msa0232850 | Msa0808010 | 0.865941 | 4.096459e-65 | -8.615850e-47 |
| Msa0232850 | Msa0808020 | 0.861256 | 1.165824e-63 | -8.615850e-47 |
| Msa0232850 | Msa0811080 | 0.837736 | 4.359372e-57 | -8.615850e-47 |
| Msa0232850 | Msa0811270 | 0.849325 | 3.476025e-60 | -8.615850e-47 |
| Msa0232850 | Msa0824600 | 0.809659 | 1.695985e-50 | -8.615850e-47 |
| Msa0232850 | Msa0825860 | 0.912694 | 1.452275e-83 | -8.615850e-47 |
| Msa0232850 | Msa0833290 | 0.825384 | 4.827714e-54 | -8.615850e-47 |
| Msa0232850 | Msa0845930 | 0.813558 | 2.408852e-51 | -8.615850e-47 |
| Msa0232850 | Msa0846210 | 0.848436 | 6.138347e-60 | -8.615850e-47 |
| Msa0232850 | Msa0846330 | 0.889626 | 2.046302e-73 | -8.615850e-47 |
| Msa0232850 | Msa0846350 | 0.875653 | 2.600436e-68 | -8.615850e-47 |
| Msa0232850 | Msa0848960 | 0.820184 | 7.843566e-53 | -8.615850e-47 |
| Msa0232850 | Msa0854980 | 0.840828 | 6.870972e-58 | -8.615850e-47 |
| Msa0232850 | Msa0858980 | 0.834475 | 2.932940e-56 | -8.615850e-47 |
| Msa0232850 | Msa0865320 | 0.896300 | 4.211052e-76 | -8.615850e-47 |
| Msa0232850 | Msa0872230 | 0.820354 | 7.168591e-53 | -8.615850e-47 |
| Msa0232850 | Msa0873460 | 0.819855 | 9.329439e-53 | -8.615850e-47 |
| Msa0232850 | Msa0877250 | 0.804059 | 2.590146e-49 | -8.615850e-47 |
| Msa0232850 | Msa0885280 | 0.820865 | 5.471885e-53 | -8.615850e-47 |
| Msa0232850 | Msa0885290 | 0.839983 | 1.143312e-57 | -8.615850e-47 |
| Msa0232850 | Msa0888370 | 0.855023 | 8.332855e-62 | -8.615850e-47 |
| Msa0232850 | Msa0888420 | 0.807451 | 5.022465e-50 | -8.615850e-47 |
| Msa0232850 | Msa0889850 | 0.807778 | 4.280998e-50 | -8.615850e-47 |
| Msa0232850 | Msa0896080 | 0.826463 | 2.676292e-54 | -8.615850e-47 |
| Msa0232850 | Msa0897880 | 0.801065 | 1.073402e-48 | -8.615850e-47 |
| Msa0232850 | Msa0898080 | 0.814709 | 1.341635e-51 | -8.615850e-47 |
| Msa0232850 | Msa0898380 | 0.813074 | 3.076961e-51 | -8.615850e-47 |
| Msa0232850 | Msa0899430 | 0.802134 | 6.479486e-49 | -8.615850e-47 |
| Msa0232850 | Msa0907260 | 0.830124 | 3.504270e-55 | -8.615850e-47 |
| Msa0232850 | Msa0952350 | 0.810612 | 1.056965e-50 | -8.615850e-47 |
| Msa0232850 | Msa0954910 | 0.844683 | 6.495398e-59 | -8.615850e-47 |
| Msa0232850 | Msa0956270 | 0.825925 | 3.593123e-54 | -8.615850e-47 |
| Msa0232850 | Msa0957860 | 0.868169 | 7.973702e-66 | -8.615850e-47 |
| Msa0232850 | Msa0957960 | 0.868338 | 7.032901e-66 | -8.615850e-47 |
| Msa0232850 | Msa0958550 | 0.811145 | 8.103139e-51 | -8.615850e-47 |
| Msa0232850 | Msa0974870 | 0.809899 | 1.506082e-50 | -8.615850e-47 |
| Msa0232850 | Msa0979410 | 0.811215 | 7.828092e-51 | -8.615850e-47 |
| Msa0232850 | Msa0981270 | 0.808876 | 2.496636e-50 | -8.615850e-47 |
| Msa0232850 | Msa0981370 | 0.832986 | 6.910657e-56 | -8.615850e-47 |
| Msa0232850 | Msa0986360 | 0.829328 | 5.472897e-55 | -8.615850e-47 |
| Msa0232850 | Msa0989060 | 0.899727 | 1.488165e-77 | -8.615850e-47 |
| Msa0232850 | Msa1002310 | 0.812460 | 4.193193e-51 | -8.615850e-47 |
| Msa0232850 | Msa1014540 | 0.803246 | 3.820688e-49 | -8.615850e-47 |
| Msa0232850 | Msa1016280 | 0.879273 | 1.425692e-69 | -8.615850e-47 |
| Msa0232850 | Msa1024240 | 0.844867 | 5.793708e-59 | -8.615850e-47 |
| Msa0232850 | Msa1025360 | 0.886939 | 2.209963e-72 | -8.615850e-47 |
| Msa0232850 | Msa1025370 | 0.877501 | 5.975599e-69 | -8.615850e-47 |
| Msa0232850 | Msa1044830 | 0.876237 | 1.638585e-68 | -8.615850e-47 |
| Msa0232850 | Msa1044840 | 0.888969 | 3.682766e-73 | -8.615850e-47 |
| Msa0232850 | Msa1054790 | 0.802365 | 5.808245e-49 | -8.615850e-47 |
| Msa0232850 | Msa1057920 | 0.826409 | 2.756628e-54 | -8.615850e-47 |
| Msa0232850 | Msa1060840 | 0.830166 | 3.422802e-55 | -8.615850e-47 |
| Msa0232850 | Msa1062810 | 0.800750 | 1.244992e-48 | -8.615850e-47 |
| Msa0232850 | Msa1092990 | 0.953975 | 8.339287e-112 | -8.615850e-47 |
| Msa0232850 | Msa1099970 | 0.811209 | 7.848572e-51 | -8.615850e-47 |
| Msa0232850 | Msa1100980 | 0.903645 | 2.800132e-79 | -8.615850e-47 |
| Msa0232850 | Msa1109440 | 0.881533 | 2.218562e-70 | -8.615850e-47 |
| Msa0232850 | Msa1114030 | 0.815400 | 9.425306e-52 | -8.615850e-47 |
| Msa0232850 | Msa1116260 | 0.802260 | 6.104338e-49 | -8.615850e-47 |
| Msa0232850 | Msa1121200 | 0.855320 | 6.827941e-62 | -8.615850e-47 |
| Msa0232850 | Msa1135740 | 0.882335 | 1.135731e-70 | -8.615850e-47 |
| Msa0232850 | Msa1136090 | 0.850522 | 1.608083e-60 | -8.615850e-47 |
| Msa0232850 | Msa1146110 | 0.875125 | 3.943299e-68 | -8.615850e-47 |
| Msa0232850 | Msa1149360 | 0.803085 | 4.125027e-49 | -8.615850e-47 |
| Msa0232850 | Msa1150370 | 0.824998 | 5.956365e-54 | -8.615850e-47 |
| Msa0232850 | Msa1173920 | 0.837742 | 4.343049e-57 | -8.615850e-47 |
| Msa0232850 | Msa1178340 | 0.807724 | 4.395839e-50 | -8.615850e-47 |
| Msa0232850 | Msa1182090 | 0.829257 | 5.695482e-55 | -8.615850e-47 |
| Msa0232850 | Msa1184420 | 0.823361 | 1.443747e-53 | -8.615850e-47 |
| Msa0232850 | Msa1187940 | 0.868639 | 5.624522e-66 | -8.615850e-47 |
| Msa0232850 | Msa1187950 | 0.882405 | 1.071322e-70 | -8.615850e-47 |
| Msa0232850 | Msa1192640 | 0.869276 | 3.495072e-66 | -8.615850e-47 |
| Msa0232850 | Msa1193730 | 0.814190 | 1.747595e-51 | -8.615850e-47 |
| Msa0232850 | Msa1211030 | 0.806718 | 7.180615e-50 | -8.615850e-47 |
| Msa0232850 | Msa1230430 | 0.829237 | 5.761162e-55 | -8.615850e-47 |
| Msa0232850 | Msa1246880 | 0.856586 | 2.911678e-62 | -8.615850e-47 |
| Msa0232850 | Msa1260100 | 0.823248 | 1.533802e-53 | -8.615850e-47 |
| Msa0232850 | Msa1269670 | 0.899241 | 2.408142e-77 | -8.615850e-47 |
| Msa0232850 | Msa1270230 | 0.890166 | 1.258904e-73 | -8.615850e-47 |
| Msa0232850 | Msa1270240 | 0.859281 | 4.608852e-63 | -8.615850e-47 |
| Msa0232850 | Msa1270270 | 0.881323 | 2.640841e-70 | -8.615850e-47 |
| Msa0232850 | Msa1273230 | 0.844815 | 5.982599e-59 | -8.615850e-47 |
| Msa0232850 | Msa1283330 | 0.891356 | 4.282622e-74 | -8.615850e-47 |
| Msa0232850 | Msa1285930 | 0.890274 | 1.142112e-73 | -8.615850e-47 |
| Msa0232850 | Msa1287800 | 0.879235 | 1.470624e-69 | -8.615850e-47 |
| Msa0232850 | Msa1287810 | 0.893631 | 5.249647e-75 | -8.615850e-47 |
| Msa0232850 | Msa1287820 | 0.827565 | 1.458797e-54 | -8.615850e-47 |
| Msa0232850 | Msa1287830 | 0.810455 | 1.142975e-50 | -8.615850e-47 |
| Msa0232850 | Msa1289420 | 0.811797 | 5.848386e-51 | -8.615850e-47 |
| Msa0232850 | Msa1289430 | 0.848860 | 4.682565e-60 | -8.615850e-47 |
| Msa0232850 | Msa1297210 | 0.824419 | 8.155930e-54 | -8.615850e-47 |
| Msa0232850 | Msa1305480 | 0.820235 | 7.635476e-53 | -8.615850e-47 |
| Msa0232850 | Msa1307890 | 0.840311 | 9.384722e-58 | -8.615850e-47 |
| Msa0232850 | Msa1310120 | 0.813431 | 2.569058e-51 | -8.615850e-47 |
| Msa0232850 | Msa1320300 | 0.838295 | 3.130794e-57 | -8.615850e-47 |
| Msa0232850 | Msa1321560 | 0.810084 | 1.374388e-50 | -8.615850e-47 |
| Msa0232850 | Msa1340590 | 0.854046 | 1.596995e-61 | -8.615850e-47 |
| Msa0232850 | Msa1342200 | 0.816729 | 4.759339e-52 | -8.615850e-47 |
| Msa0232850 | Msa1344520 | 0.827785 | 1.291085e-54 | -8.615850e-47 |
| Msa0232850 | Msa1369430 | 0.866031 | 3.836904e-65 | -8.615850e-47 |
| Msa0232850 | Msa1382700 | 0.831858 | 1.315441e-55 | -8.615850e-47 |
| Msa0232850 | Msa1386330 | 0.863021 | 3.351735e-64 | -8.615850e-47 |
| Msa0232850 | Msa1397150 | 0.805192 | 1.502956e-49 | -8.615850e-47 |
| Msa0232850 | Msa1397580 | 0.851817 | 6.931205e-61 | -8.615850e-47 |
| Msa0232850 | Msa1402790 | 0.852662 | 3.984405e-61 | -8.615850e-47 |
| Msa0232850 | Msa1402930 | 0.831769 | 1.383780e-55 | -8.615850e-47 |
| Msa0232850 | Msa1404000 | 0.881211 | 2.897842e-70 | -8.615850e-47 |
| Msa0232850 | Msa1408780 | 0.819865 | 9.277682e-53 | -8.615850e-47 |
| Msa0232850 | Msa1415310 | 0.882063 | 1.426402e-70 | -8.615850e-47 |
| Msa0232850 | Msa1422180 | 0.889106 | 3.257821e-73 | -8.615850e-47 |
| Msa0232850 | Msa1433120 | 0.861143 | 1.261704e-63 | -8.615850e-47 |
| Msa0232850 | Msa1451190 | 0.816244 | 6.111663e-52 | -8.615850e-47 |
| Msa0232850 | Msa1451570 | 0.819521 | 1.111636e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232850 | MtrunA17_Chr2g0308161 | 72.131 | 61 | 12 | 1 | 60 | 115 | 19 | 79 | 1.54e-15 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 18 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAACCATTTCTTGAAGTT+GGG | 0.352117 | 2_2:+5111872 | None:intergenic |
| TTTCAACCATTTCTTGAAGT+TGG | 0.356872 | 2_2:+5111871 | None:intergenic |
| CTAGTCCCAACTTCAAGAAA+TGG | 0.372385 | 2_2:-5111877 | Msa0232850:intron |
| AAGCAATTGGATGTAGAAAC+TGG | 0.389575 | 2_2:-5112005 | Msa0232850:CDS |
| ATGGGAAAGGAGTGTGTACC+AGG | 0.471236 | 2_2:-5111813 | Msa0232850:intron |
| CTTGAGGACAACATAGGTGA+TGG | 0.475620 | 2_2:-5111389 | Msa0232850:CDS |
| ACTTCAAGAAATGGTTGAAA+AGG | 0.483448 | 2_2:-5111868 | Msa0232850:CDS |
| AGGAAGTAGAGGAAAGCAAT+TGG | 0.498254 | 2_2:-5112018 | Msa0232850:CDS |
| ATGAAATTCAAGAGGATGAT+CGG | 0.537624 | 2_2:-5111316 | Msa0232850:CDS |
| GAATTTCTTGAGGACAACAT+AGG | 0.539954 | 2_2:-5111395 | Msa0232850:CDS |
| TCAAGAAATGGTTGAAAAGG+AGG | 0.541538 | 2_2:-5111865 | Msa0232850:CDS |
| TTGAGGACAACATAGGTGAT+GGG | 0.545907 | 2_2:-5111388 | Msa0232850:CDS |
| CGCATATCATGAATTTCTTG+AGG | 0.553600 | 2_2:-5111405 | Msa0232850:CDS |
| GAAACTCGACAAGGAAGTAG+AGG | 0.581711 | 2_2:-5112029 | Msa0232850:CDS |
| TATATATGATGAATTTCAAG+AGG | 0.613332 | 2_2:-5111351 | Msa0232850:CDS |
| TCTAGATGATGAAATTCAAG+AGG | 0.613572 | 2_2:-5111324 | Msa0232850:CDS |
| CATAGGTGATGGGTTTCAGA+AGG | 0.615780 | 2_2:-5111378 | Msa0232850:CDS |
| CATAGATGAGGAATTTCAAG+AGG | 0.630357 | 2_2:-5111432 | Msa0232850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGTAAAAATTTAAAGTTA+CGG | - | chr2_2:5111380-5111399 | Msa0232850:CDS | 10.0% |
| !!! | TATGTAAAAATTTAAAGTTA+CGG | - | chr2_2:5111380-5111399 | Msa0232850:CDS | 10.0% |
| !! | AAATTGTGTTTAACTAATAT+AGG | - | chr2_2:5111404-5111423 | Msa0232850:CDS | 15.0% |
| !! | AAATTGTGTTTAACTAATAT+AGG | - | chr2_2:5111404-5111423 | Msa0232850:CDS | 15.0% |
| !! | AAGTTGAAGAAACTTAAAAA+TGG | - | chr2_2:5111633-5111652 | Msa0232850:intron | 20.0% |
| !! | AGTTGAAGAAACTTAAAAAT+GGG | - | chr2_2:5111634-5111653 | Msa0232850:intron | 20.0% |
| !!! | TTTTATTTTCATATGCAACA+AGG | - | chr2_2:5111827-5111846 | Msa0232850:CDS | 20.0% |
| !!! | AATTATTTTCATATGCAACA+AGG | - | chr2_2:5111869-5111888 | Msa0232850:CDS | 20.0% |
| !! | TATATATGATGAATTTCAAG+AGG | - | chr2_2:5112000-5112019 | Msa0232850:intron | 20.0% |
| !! | AAGTTGAAGAAACTTAAAAA+TGG | - | chr2_2:5111633-5111652 | Msa0232850:intron | 20.0% |
| !! | AGTTGAAGAAACTTAAAAAT+GGG | - | chr2_2:5111634-5111653 | Msa0232850:intron | 20.0% |
| !!! | TTTTATTTTCATATGCAACA+AGG | - | chr2_2:5111827-5111846 | Msa0232850:CDS | 20.0% |
| !!! | AATTATTTTCATATGCAACA+AGG | - | chr2_2:5111869-5111888 | Msa0232850:CDS | 20.0% |
| !! | TATATATGATGAATTTCAAG+AGG | - | chr2_2:5112000-5112019 | Msa0232850:intron | 20.0% |
| ! | TTGTGTTTAACTAATATAGG+CGG | - | chr2_2:5111407-5111426 | Msa0232850:CDS | 25.0% |
| ! | TTGTAATGATAGAATTAGGA+AGG | - | chr2_2:5111658-5111677 | Msa0232850:intron | 25.0% |
| ! | TGTAATGATAGAATTAGGAA+GGG | - | chr2_2:5111659-5111678 | Msa0232850:intron | 25.0% |
| ! | CTTTGAATCAACAATATCTA+CGG | - | chr2_2:5111791-5111810 | Msa0232850:intron | 25.0% |
| ! | TTGTGTTTAACTAATATAGG+CGG | - | chr2_2:5111407-5111426 | Msa0232850:CDS | 25.0% |
| ! | TTGTAATGATAGAATTAGGA+AGG | - | chr2_2:5111658-5111677 | Msa0232850:intron | 25.0% |
| ! | TGTAATGATAGAATTAGGAA+GGG | - | chr2_2:5111659-5111678 | Msa0232850:intron | 25.0% |
| ! | CTTTGAATCAACAATATCTA+CGG | - | chr2_2:5111791-5111810 | Msa0232850:intron | 25.0% |
| !!! | ATGTTTTTTGAAACTCGACA+AGG | - | chr2_2:5111313-5111332 | Msa0232850:CDS | 30.0% |
| TTCAACCATTTCTTGAAGTT+GGG | + | chr2_2:5111482-5111501 | None:intergenic | 30.0% | |
| TTTCAACCATTTCTTGAAGT+TGG | + | chr2_2:5111483-5111502 | None:intergenic | 30.0% | |
| ACTTCAAGAAATGGTTGAAA+AGG | - | chr2_2:5111483-5111502 | Msa0232850:CDS | 30.0% | |
| !!! | GAAGCTTTTAAAGCTGTTAT+GGG | - | chr2_2:5111520-5111539 | Msa0232850:intron | 30.0% |
| !!! | TTTTAAAGCTGTTATGGGAA+AGG | - | chr2_2:5111525-5111544 | Msa0232850:intron | 30.0% |
| CAAAACAAATGTTCTACTTG+CGG | - | chr2_2:5111689-5111708 | Msa0232850:intron | 30.0% | |
| !!! | ATTTGGTTTTTATTTGTGCG+AGG | - | chr2_2:5111740-5111759 | Msa0232850:intron | 30.0% |
| !! | CGTAGATATTGTTGATTCAA+AGG | + | chr2_2:5111793-5111812 | None:intergenic | 30.0% |
| TGAAAAAGATGACATAGATG+AGG | - | chr2_2:5111907-5111926 | Msa0232850:intron | 30.0% | |
| TCTAGATGATGAAATTCAAG+AGG | - | chr2_2:5112027-5112046 | Msa0232850:CDS | 30.0% | |
| ATGAAATTCAAGAGGATGAT+CGG | - | chr2_2:5112035-5112054 | Msa0232850:CDS | 30.0% | |
| !!! | ATGTTTTTTGAAACTCGACA+AGG | - | chr2_2:5111313-5111332 | Msa0232850:CDS | 30.0% |
| TTCAACCATTTCTTGAAGTT+GGG | + | chr2_2:5111482-5111501 | None:intergenic | 30.0% | |
| TTTCAACCATTTCTTGAAGT+TGG | + | chr2_2:5111483-5111502 | None:intergenic | 30.0% | |
| ACTTCAAGAAATGGTTGAAA+AGG | - | chr2_2:5111483-5111502 | Msa0232850:CDS | 30.0% | |
| !!! | GAAGCTTTTAAAGCTGTTAT+GGG | - | chr2_2:5111520-5111539 | Msa0232850:intron | 30.0% |
| !!! | TTTTAAAGCTGTTATGGGAA+AGG | - | chr2_2:5111525-5111544 | Msa0232850:intron | 30.0% |
| CAAAACAAATGTTCTACTTG+CGG | - | chr2_2:5111689-5111708 | Msa0232850:intron | 30.0% | |
| !!! | ATTTGGTTTTTATTTGTGCG+AGG | - | chr2_2:5111740-5111759 | Msa0232850:intron | 30.0% |
| !! | CGTAGATATTGTTGATTCAA+AGG | + | chr2_2:5111793-5111812 | None:intergenic | 30.0% |
| TGAAAAAGATGACATAGATG+AGG | - | chr2_2:5111907-5111926 | Msa0232850:intron | 30.0% | |
| TCTAGATGATGAAATTCAAG+AGG | - | chr2_2:5112027-5112046 | Msa0232850:CDS | 30.0% | |
| ATGAAATTCAAGAGGATGAT+CGG | - | chr2_2:5112035-5112054 | Msa0232850:CDS | 30.0% | |
| AAGCAATTGGATGTAGAAAC+TGG | - | chr2_2:5111346-5111365 | Msa0232850:CDS | 35.0% | |
| TCAAGAAATGGTTGAAAAGG+AGG | - | chr2_2:5111486-5111505 | Msa0232850:CDS | 35.0% | |
| !!! | CGAAGCTTTTAAAGCTGTTA+TGG | - | chr2_2:5111519-5111538 | Msa0232850:intron | 35.0% |
| GGGCTTGTAATGATAGAATT+AGG | - | chr2_2:5111654-5111673 | Msa0232850:intron | 35.0% | |
| !! | GCGTGTTTTACTTGTTGATT+TGG | - | chr2_2:5111723-5111742 | Msa0232850:intron | 35.0% |
| CATAGATGAGGAATTTCAAG+AGG | - | chr2_2:5111919-5111938 | Msa0232850:intron | 35.0% | |
| CGCATATCATGAATTTCTTG+AGG | - | chr2_2:5111946-5111965 | Msa0232850:intron | 35.0% | |
| GAATTTCTTGAGGACAACAT+AGG | - | chr2_2:5111956-5111975 | Msa0232850:intron | 35.0% | |
| AAGCAATTGGATGTAGAAAC+TGG | - | chr2_2:5111346-5111365 | Msa0232850:CDS | 35.0% | |
| TCAAGAAATGGTTGAAAAGG+AGG | - | chr2_2:5111486-5111505 | Msa0232850:CDS | 35.0% | |
| !!! | CGAAGCTTTTAAAGCTGTTA+TGG | - | chr2_2:5111519-5111538 | Msa0232850:intron | 35.0% |
| GGGCTTGTAATGATAGAATT+AGG | - | chr2_2:5111654-5111673 | Msa0232850:intron | 35.0% | |
| !! | GCGTGTTTTACTTGTTGATT+TGG | - | chr2_2:5111723-5111742 | Msa0232850:intron | 35.0% |
| CATAGATGAGGAATTTCAAG+AGG | - | chr2_2:5111919-5111938 | Msa0232850:intron | 35.0% | |
| CGCATATCATGAATTTCTTG+AGG | - | chr2_2:5111946-5111965 | Msa0232850:intron | 35.0% | |
| GAATTTCTTGAGGACAACAT+AGG | - | chr2_2:5111956-5111975 | Msa0232850:intron | 35.0% | |
| AGGAAGTAGAGGAAAGCAAT+TGG | - | chr2_2:5111333-5111352 | Msa0232850:CDS | 40.0% | |
| CTAGTCCCAACTTCAAGAAA+TGG | - | chr2_2:5111474-5111493 | Msa0232850:CDS | 40.0% | |
| AACACAATCAAAATCCGACC+TGG | + | chr2_2:5111559-5111578 | None:intergenic | 40.0% | |
| TTGAGGACAACATAGGTGAT+GGG | - | chr2_2:5111963-5111982 | Msa0232850:intron | 40.0% | |
| AGGAAGTAGAGGAAAGCAAT+TGG | - | chr2_2:5111333-5111352 | Msa0232850:CDS | 40.0% | |
| CTAGTCCCAACTTCAAGAAA+TGG | - | chr2_2:5111474-5111493 | Msa0232850:CDS | 40.0% | |
| AACACAATCAAAATCCGACC+TGG | + | chr2_2:5111559-5111578 | None:intergenic | 40.0% | |
| TTGAGGACAACATAGGTGAT+GGG | - | chr2_2:5111963-5111982 | Msa0232850:intron | 40.0% | |
| GAAACTCGACAAGGAAGTAG+AGG | - | chr2_2:5111322-5111341 | Msa0232850:CDS | 45.0% | |
| CTTGAGGACAACATAGGTGA+TGG | - | chr2_2:5111962-5111981 | Msa0232850:intron | 45.0% | |
| !! | CATAGGTGATGGGTTTCAGA+AGG | - | chr2_2:5111973-5111992 | Msa0232850:intron | 45.0% |
| GAAACTCGACAAGGAAGTAG+AGG | - | chr2_2:5111322-5111341 | Msa0232850:CDS | 45.0% | |
| CTTGAGGACAACATAGGTGA+TGG | - | chr2_2:5111962-5111981 | Msa0232850:intron | 45.0% | |
| !! | CATAGGTGATGGGTTTCAGA+AGG | - | chr2_2:5111973-5111992 | Msa0232850:intron | 45.0% |
| ! | ATGGGAAAGGAGTGTGTACC+AGG | - | chr2_2:5111538-5111557 | Msa0232850:intron | 50.0% |
| ! | GAAAGGAGTGTGTACCAGGT+CGG | - | chr2_2:5111542-5111561 | Msa0232850:intron | 50.0% |
| ! | ATGGGAAAGGAGTGTGTACC+AGG | - | chr2_2:5111538-5111557 | Msa0232850:intron | 50.0% |
| ! | GAAAGGAGTGTGTACCAGGT+CGG | - | chr2_2:5111542-5111561 | Msa0232850:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 5111313 | 5112060 | 5111313 | ID=Msa0232850;Name=Msa0232850 |
| chr2_2 | mRNA | 5111313 | 5112060 | 5111313 | ID=Msa0232850-mRNA-1;Parent=Msa0232850;Name=Msa0232850-mRNA-1;_AED=0.37;_eAED=0.38;_QI=0|0|0|1|1|1|3|0|117 |
| chr2_2 | exon | 5112001 | 5112060 | 5112001 | ID=Msa0232850-mRNA-1:exon:2255;Parent=Msa0232850-mRNA-1 |
| chr2_2 | exon | 5111814 | 5111895 | 5111814 | ID=Msa0232850-mRNA-1:exon:2254;Parent=Msa0232850-mRNA-1 |
| chr2_2 | exon | 5111313 | 5111524 | 5111313 | ID=Msa0232850-mRNA-1:exon:2253;Parent=Msa0232850-mRNA-1 |
| chr2_2 | CDS | 5112001 | 5112060 | 5112001 | ID=Msa0232850-mRNA-1:cds;Parent=Msa0232850-mRNA-1 |
| chr2_2 | CDS | 5111814 | 5111895 | 5111814 | ID=Msa0232850-mRNA-1:cds;Parent=Msa0232850-mRNA-1 |
| chr2_2 | CDS | 5111313 | 5111524 | 5111313 | ID=Msa0232850-mRNA-1:cds;Parent=Msa0232850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
