AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1397540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1397540 MtrunA17_Chr1g0207861 95.359 474 22 0 1 474 1 474 0.0 921
Msa1397540 MtrunA17_Chr1g0161351 86.624 471 61 1 1 469 28 498 0.0 832
Msa1397540 MtrunA17_Chr3g0098111 82.636 478 83 0 2 479 3 480 0.0 825
Msa1397540 MtrunA17_Chr8g0365811 76.110 473 107 3 3 471 490 960 0.0 735
Msa1397540 MtrunA17_Chr8g0365811 75.941 478 108 4 1 471 1 478 0.0 719
Msa1397540 MtrunA17_Chr1g0207931 75.523 478 62 3 1 478 85 507 0.0 728
Msa1397540 MtrunA17_Chr1g0207951 70.502 478 133 1 2 479 650 1119 0.0 692
Msa1397540 MtrunA17_Chr1g0207951 72.257 483 110 7 2 479 118 581 0.0 692
Msa1397540 MtrunA17_Chr1g0207971 72.939 473 105 8 1 469 1 454 0.0 676
Msa1397540 MtrunA17_Chr1g0207831 68.973 477 137 4 1 474 1 469 0.0 663
Msa1397540 MtrunA17_Chr5g0393591 50.858 466 185 6 8 472 17 439 7.87e-166 476
Msa1397540 MtrunA17_Chr1g0207881 67.677 297 65 4 1 296 1 267 1.87e-133 391
Msa1397540 MtrunA17_Chr1g0207881 81.379 145 27 0 335 479 251 395 1.92e-77 247
Msa1397540 MtrunA17_Chr1g0207981 40.295 474 256 13 8 468 13 472 1.56e-110 335
Msa1397540 MtrunA17_Chr1g0207911 66.800 250 82 1 1 249 1 250 4.21e-110 326
Msa1397540 MtrunA17_Chr4g0053501 38.983 472 267 13 4 468 7 464 5.20e-103 317
Msa1397540 MtrunA17_Chr5g0414331 38.004 471 260 11 6 470 11 455 1.09e-99 307
Msa1397540 MtrunA17_Chr6g0464871 37.931 464 261 10 7 465 22 463 3.37e-99 306
Msa1397540 MtrunA17_Chr5g0414321 37.021 470 266 9 6 470 9 453 2.79e-98 303
Msa1397540 MtrunA17_Chr6g0464841 36.422 464 268 10 7 465 10 451 1.62e-97 301
Msa1397540 MtrunA17_Chr8g0380531 35.789 475 272 10 5 469 7 458 1.72e-97 301
Msa1397540 MtrunA17_Chr3g0121991 39.050 484 259 14 6 468 77 545 2.81e-97 303
Msa1397540 MtrunA17_Chr6g0464881 36.247 469 272 9 8 471 11 457 6.36e-97 300
Msa1397540 MtrunA17_Chr4g0053321 39.362 470 264 11 6 468 24 479 1.19e-96 300
Msa1397540 MtrunA17_Chr7g0250001 36.943 471 266 10 4 468 2 447 3.89e-95 295
Msa1397540 MtrunA17_Chr6g0464861 36.638 464 264 10 8 465 11 450 5.59e-95 295
Msa1397540 MtrunA17_Chr8g0377921 36.307 482 264 13 8 468 4 463 7.36e-93 289
Msa1397540 MtrunA17_Chr8g0377941 35.903 493 276 11 3 478 2 471 1.00e-92 289
Msa1397540 MtrunA17_Chr5g0401721 36.059 477 289 10 1 468 1 470 2.56e-92 288
Msa1397540 MtrunA17_Chr7g0249981 36.111 468 270 10 8 470 25 468 1.26e-90 284
Msa1397540 MtrunA17_Chr6g0464921 34.194 465 282 8 8 468 11 455 2.57e-88 277
Msa1397540 MtrunA17_Chr3g0122001 37.888 483 267 13 6 468 4 473 2.44e-87 287
Msa1397540 MtrunA17_Chr3g0122001 37.910 488 259 15 6 468 484 952 3.06e-87 286
Msa1397540 MtrunA17_Chr7g0249931 34.874 476 273 12 3 468 35 483 4.23e-81 259
Msa1397540 MtrunA17_Chr5g0426431 33.126 483 286 14 7 468 11 477 7.35e-73 238
Msa1397540 MtrunA17_Chr3g0118771 29.675 492 315 12 2 474 15 494 9.90e-73 238
Msa1397540 MtrunA17_Chr3g0118671 30.864 486 293 12 8 468 6 473 2.77e-71 234
Msa1397540 MtrunA17_Chr3g0118711 28.041 485 318 9 3 468 8 480 3.44e-69 228
Msa1397540 MtrunA17_Chr6g0454191 31.352 488 291 15 8 468 10 480 3.94e-69 228
Msa1397540 MtrunA17_Chr6g0454341 30.346 491 305 13 1 468 1 477 7.99e-69 227
Msa1397540 MtrunA17_Chr3g0078841 30.658 486 302 12 5 468 5 477 1.03e-68 227
Msa1397540 MtrunA17_Chr2g0278711 30.769 481 298 11 8 468 11 476 1.48e-68 226
Msa1397540 MtrunA17_Chr6g0454401 30.223 493 306 11 1 468 1 480 2.34e-68 226
Msa1397540 MtrunA17_Chr3g0118701 27.629 485 322 10 8 474 15 488 1.85e-67 224
Msa1397540 MtrunA17_Chr8g0336331 30.723 498 293 16 1 468 1 476 2.14e-67 223
Msa1397540 MtrunA17_Chr7g0217881 32.353 476 283 12 8 468 10 461 2.34e-67 223
Msa1397540 MtrunA17_Chr4g0050341 30.561 481 299 13 8 465 19 487 1.29e-66 222
Msa1397540 MtrunA17_Chr3g0118691 27.010 485 325 10 8 474 15 488 1.58e-66 221
Msa1397540 MtrunA17_Chr3g0092641 31.365 491 297 16 1 468 4 477 2.21e-66 221
Msa1397540 MtrunA17_Chr6g0453961 30.390 487 297 11 8 468 19 489 2.50e-66 221
Msa1397540 MtrunA17_Chr6g0454201 31.677 483 295 12 8 468 11 480 5.05e-66 220
Msa1397540 MtrunA17_Chr6g0454301 30.364 494 301 14 1 468 254 730 8.51e-64 219
Msa1397540 MtrunA17_Chr6g0454301 33.621 232 144 3 238 467 5 228 6.93e-38 147
Msa1397540 MtrunA17_Chr6g0453951 30.223 493 289 14 8 468 57 526 2.04e-63 214
Msa1397540 MtrunA17_Chr6g0454331 30.120 498 295 14 3 468 2 478 6.33e-63 212
Msa1397540 MtrunA17_Chr6g0454181 30.309 485 299 12 8 468 10 479 7.24e-63 212
Msa1397540 MtrunA17_Chr6g0454141 28.542 487 315 9 3 468 5 479 7.24e-63 212
Msa1397540 MtrunA17_Chr6g0454361 30.021 483 303 13 8 468 11 480 8.95e-63 211
Msa1397540 MtrunA17_Chr7g0249961 43.922 255 123 7 227 472 20 263 4.19e-62 203
Msa1397540 MtrunA17_Chr6g0454321 29.193 483 293 12 1 454 1 463 1.05e-61 213
Msa1397540 MtrunA17_Chr4g0044511 29.817 493 294 14 8 472 40 508 4.69e-60 205
Msa1397540 MtrunA17_Chr6g0454121 29.150 494 302 12 3 468 5 478 1.80e-59 202
Msa1397540 MtrunA17_Chr5g0423981 27.484 473 293 7 8 468 10 444 7.31e-59 200
Msa1397540 MtrunA17_Chr6g0452771 30.595 487 295 11 8 468 10 479 1.90e-58 200
Msa1397540 MtrunA17_Chr6g0454261 27.992 493 308 11 4 468 6 479 2.58e-58 200
Msa1397540 MtrunA17_Chr3g0112771 29.957 464 296 9 9 468 13 451 4.04e-58 199
Msa1397540 MtrunA17_Chr8g0359821 28.884 502 292 14 3 468 5 477 4.12e-58 199
Msa1397540 MtrunA17_Chr3g0118661 28.958 480 307 13 8 467 13 478 1.09e-57 198
Msa1397540 MtrunA17_Chr6g0454151 30.162 494 294 13 4 468 6 477 1.35e-57 197
Msa1397540 MtrunA17_Chr7g0218811 31.423 471 271 17 8 465 15 446 2.70e-57 196
Msa1397540 MtrunA17_Chr7g0218791 30.802 474 281 18 5 465 2 441 3.59e-57 196
Msa1397540 MtrunA17_Chr6g0454131 29.012 486 313 10 3 468 5 478 4.81e-57 196
Msa1397540 MtrunA17_Chr3g0112761 30.689 479 291 14 1 468 1 449 1.60e-55 192
Msa1397540 MtrunA17_Chr6g0454351 27.950 483 296 13 8 468 12 464 1.87e-55 192
Msa1397540 MtrunA17_Chr6g0454291 28.953 487 313 11 3 468 2 476 1.00e-54 190
Msa1397540 MtrunA17_Chr3g0118721 33.721 258 160 3 215 468 39 289 3.14e-54 183
Msa1397540 MtrunA17_Chr3g0118751 26.186 485 300 13 8 474 6 450 7.83e-54 187
Msa1397540 MtrunA17_Chr6g0454211 28.889 495 303 12 3 468 292 766 5.67e-53 190
Msa1397540 MtrunA17_Chr6g0454211 26.766 269 151 6 125 380 1 236 2.08e-19 91.7
Msa1397540 MtrunA17_Chr5g0412131 30.498 482 294 14 8 470 12 471 7.85e-53 185
Msa1397540 MtrunA17_Chr5g0412101 29.485 485 304 12 4 470 8 472 2.98e-52 183
Msa1397540 MtrunA17_Chr5g0419771 28.112 498 314 15 3 470 31 514 3.17e-52 184
Msa1397540 MtrunA17_Chr8g0366391 28.862 492 315 15 1 470 1 479 3.35e-52 183
Msa1397540 MtrunA17_Chr7g0218821 29.787 470 291 16 8 465 5 447 3.96e-52 182
Msa1397540 MtrunA17_Chr7g0243631 28.024 496 304 18 8 470 13 488 1.21e-51 182
Msa1397540 MtrunA17_Chr5g0412111 29.228 479 303 14 8 470 5 463 7.11e-51 179
Msa1397540 MtrunA17_Chr4g0032331 29.046 482 295 15 1 468 1 449 1.90e-50 178
Msa1397540 MtrunA17_Chr7g0243931 28.947 494 302 18 8 470 17 492 2.09e-50 179
Msa1397540 MtrunA17_Chr7g0265141 28.455 492 319 13 1 467 1 484 3.64e-50 178
Msa1397540 MtrunA17_Chr7g0218831 29.598 473 276 19 8 465 6 436 7.96e-50 176
Msa1397540 MtrunA17_Chr8g0339631 31.771 384 222 15 115 475 109 475 4.61e-49 175
Msa1397540 MtrunA17_Chr7g0218841 28.998 469 285 17 8 465 6 437 7.10e-49 173
Msa1397540 MtrunA17_Chr8g0339461 31.398 379 223 12 115 470 109 473 1.07e-48 174
Msa1397540 MtrunA17_Chr4g0066201 28.745 494 300 17 9 478 19 484 1.95e-48 173
Msa1397540 MtrunA17_Chr5g0426401 33.333 306 190 7 168 468 14 310 3.85e-48 168
Msa1397540 MtrunA17_Chr7g0243951 27.126 494 320 13 3 470 6 485 4.83e-48 172
Msa1397540 MtrunA17_Chr7g0232401 31.070 383 229 12 110 473 106 472 9.84e-48 171
Msa1397540 MtrunA17_Chr7g0243771 27.655 499 306 16 4 470 2 477 1.02e-47 171
Msa1397540 MtrunA17_Chr4g0066261 28.398 493 297 19 11 470 14 483 1.56e-47 171
Msa1397540 MtrunA17_Chr6g0454271 32.886 298 185 6 180 471 4 292 2.32e-47 165
Msa1397540 MtrunA17_Chr7g0243781 27.668 506 292 20 8 473 9 480 3.41e-47 170
Msa1397540 MtrunA17_Chr6g0454221 36.864 236 136 4 240 471 7 233 7.26e-47 164
Msa1397540 MtrunA17_Chr5g0431441 26.667 480 301 14 8 468 18 465 8.48e-47 168
Msa1397540 MtrunA17_Chr5g0448521 30.990 384 220 13 116 470 102 469 1.03e-46 168
Msa1397540 MtrunA17_Chr8g0339451 31.316 380 222 14 115 470 101 465 1.47e-46 168
Msa1397540 MtrunA17_Chr7g0243681 27.586 493 315 16 3 470 6 481 1.50e-46 168
Msa1397540 MtrunA17_Chr7g0275681 28.743 501 291 17 8 471 12 483 2.16e-46 167
Msa1397540 MtrunA17_Chr1g0179901 27.071 495 320 14 5 470 13 495 2.89e-46 167
Msa1397540 MtrunA17_Chr5g0419761 28.205 507 292 19 6 468 7 485 3.50e-46 167
Msa1397540 MtrunA17_Chr7g0243801 27.621 496 302 17 8 470 7 478 6.81e-46 166
Msa1397540 MtrunA17_Chr8g0373301 29.867 375 225 10 110 464 106 462 8.44e-46 166
Msa1397540 MtrunA17_Chr4g0060511 26.523 509 308 18 3 470 6 489 1.11e-45 166
Msa1397540 MtrunA17_Chr7g0265041 27.255 510 300 16 8 473 11 493 1.12e-45 166
Msa1397540 MtrunA17_Chr7g0243871 27.400 500 292 17 8 470 9 474 2.29e-45 165
Msa1397540 MtrunA17_Chr4g0066171 28.252 492 288 18 9 470 22 478 3.79e-45 164
Msa1397540 MtrunA17_Chr8g0361371 29.209 493 308 14 4 474 3 476 6.37e-45 164
Msa1397540 MtrunA17_Chr7g0265101 28.283 495 312 13 7 471 8 489 7.60e-45 164
Msa1397540 MtrunA17_Chr4g0044501 27.812 489 302 19 8 468 10 475 9.32e-45 163
Msa1397540 MtrunA17_Chr5g0442561 26.411 496 310 12 7 471 4 475 1.01e-44 163
Msa1397540 MtrunA17_Chr8g0355221 30.749 374 227 11 119 470 125 488 2.95e-44 162
Msa1397540 MtrunA17_Chr8g0339601 32.174 345 199 12 147 470 2 332 4.37e-44 158
Msa1397540 MtrunA17_Chr7g0232391 34.375 288 161 9 201 472 194 469 4.61e-44 161
Msa1397540 MtrunA17_Chr4g0066221 28.685 502 283 21 11 470 14 482 5.02e-44 161
Msa1397540 MtrunA17_Chr8g0347281 27.907 473 301 14 9 464 19 468 7.72e-44 160
Msa1397540 MtrunA17_Chr5g0442521 26.477 491 315 15 9 471 6 478 9.95e-44 160
Msa1397540 MtrunA17_Chr5g0431401 29.375 480 283 16 8 470 10 450 1.23e-43 159
Msa1397540 MtrunA17_Chr5g0420801 27.347 490 309 15 3 473 2 463 1.29e-43 160
Msa1397540 MtrunA17_Chr7g0243861 27.146 501 312 17 3 470 9 489 1.72e-43 160
Msa1397540 MtrunA17_Chr3g0106231 27.366 486 286 14 7 472 17 455 1.83e-43 159
Msa1397540 MtrunA17_Chr4g0066151 28.429 503 291 22 2 469 12 480 2.99e-43 159
Msa1397540 MtrunA17_Chr2g0307961 29.019 479 299 17 8 468 13 468 3.74e-43 159
Msa1397540 MtrunA17_Chr8g0347271 28.041 485 285 15 9 464 20 469 5.83e-43 158
Msa1397540 MtrunA17_Chr7g0232411 33.793 290 164 9 201 474 194 471 6.57e-43 158
Msa1397540 MtrunA17_Chr7g0232311 33.521 355 204 10 128 465 121 460 6.95e-43 157
Msa1397540 MtrunA17_Chr5g0442601 28.283 495 302 16 9 471 405 878 8.74e-43 162
Msa1397540 MtrunA17_Chr5g0442601 29.063 320 184 11 99 403 42 333 2.65e-31 128
Msa1397540 MtrunA17_Chr7g0232331 26.789 489 318 16 6 474 4 472 1.61e-42 157
Msa1397540 MtrunA17_Chr4g0072771 25.319 470 317 9 8 470 25 467 1.64e-42 157
Msa1397540 MtrunA17_Chr5g0442511 28.163 490 280 17 8 469 49 494 1.64e-42 157
Msa1397540 MtrunA17_Chr6g0454251 29.353 402 251 12 3 380 2 394 1.83e-42 155
Msa1397540 MtrunA17_Chr4g0044481 30.752 452 249 19 1 435 19 423 1.97e-42 155
Msa1397540 MtrunA17_Chr8g0374901 27.308 509 298 19 1 470 5 480 2.06e-42 157
Msa1397540 MtrunA17_Chr5g0442581 28.744 414 235 16 99 474 91 482 2.23e-42 157
Msa1397540 MtrunA17_Chr5g0431361 27.105 487 294 14 5 470 9 455 2.73e-42 156
Msa1397540 MtrunA17_Chr5g0442491 26.747 501 300 18 9 471 6 477 2.90e-42 156
Msa1397540 MtrunA17_Chr6g0454171 31.180 356 186 10 125 468 1 309 3.08e-42 152
Msa1397540 MtrunA17_Chr5g0416741 24.390 492 328 13 6 470 11 485 3.27e-42 156
Msa1397540 MtrunA17_Chr1g0165701 25.934 482 323 11 10 470 17 485 5.18e-42 156
Msa1397540 MtrunA17_Chr4g0014061 28.858 499 293 20 1 466 1 470 5.30e-42 155
Msa1397540 MtrunA17_Chr5g0431421 28.661 478 285 14 8 468 10 448 5.55e-42 155
Msa1397540 MtrunA17_Chr4g0044521 28.298 470 292 14 9 457 10 455 5.67e-42 155
Msa1397540 MtrunA17_Chr8g0339441 38.426 216 117 3 269 470 218 431 5.85e-42 154
Msa1397540 MtrunA17_Chr4g0066131 29.303 488 290 21 2 461 7 467 6.10e-42 155
Msa1397540 MtrunA17_Chr8g0335141 30.576 399 243 13 93 470 85 470 7.15e-42 155
Msa1397540 MtrunA17_Chr6g0462571 31.105 344 216 10 130 464 126 457 8.25e-42 155
Msa1397540 MtrunA17_Chr7g0232341 27.160 486 318 16 7 474 5 472 9.84e-42 155
Msa1397540 MtrunA17_Chr4g0066281 29.158 487 287 18 11 471 15 469 1.04e-41 155
Msa1397540 MtrunA17_Chr6g0462531 27.778 486 293 17 11 466 5 462 1.08e-41 154
Msa1397540 MtrunA17_Chr1g0153451 28.250 400 230 11 100 470 94 465 2.22e-41 154
Msa1397540 MtrunA17_Chr5g0448551 28.000 425 246 16 9 408 8 397 3.96e-41 152
Msa1397540 MtrunA17_Chr2g0294921 27.016 496 304 17 9 470 161 632 5.23e-41 155
Msa1397540 MtrunA17_Chr8g0369341 28.144 501 301 18 3 473 2 473 5.25e-41 153
Msa1397540 MtrunA17_Chr8g0335161 33.452 281 166 7 201 470 198 468 5.75e-41 152
Msa1397540 MtrunA17_Chr5g0431371 28.257 499 264 18 8 470 10 450 5.81e-41 152
Msa1397540 MtrunA17_Chr2g0329111 28.543 501 305 20 9 475 7 488 6.04e-41 153
Msa1397540 MtrunA17_Chr6g0463891 25.000 488 332 14 6 470 10 486 7.77e-41 152
Msa1397540 MtrunA17_Chr4g0072761 25.370 473 310 12 8 470 15 454 8.17e-41 152
Msa1397540 MtrunA17_Chr4g0011051 27.902 491 312 16 8 468 9 487 8.55e-41 152
Msa1397540 MtrunA17_Chr8g0336741 26.518 494 305 15 5 470 10 473 8.57e-41 152
Msa1397540 MtrunA17_Chr6g0463851 25.826 484 322 11 11 470 14 484 8.76e-41 152
Msa1397540 MtrunA17_Chr8g0336731 30.026 383 225 13 117 472 128 494 9.31e-41 152
Msa1397540 MtrunA17_Chr8g0374941 26.430 507 307 18 1 470 942 1419 1.26e-40 156
Msa1397540 MtrunA17_Chr8g0374941 25.773 485 280 20 11 451 14 462 2.55e-34 137
Msa1397540 MtrunA17_Chr8g0374941 25.880 483 280 21 11 450 479 926 3.00e-33 134
Msa1397540 MtrunA17_Chr8g0370941 27.027 518 306 17 7 478 7 498 2.08e-40 152
Msa1397540 MtrunA17_Chr8g0334831 29.167 504 303 17 4 474 2 484 2.90e-40 151
Msa1397540 MtrunA17_Chr6g0462551 36.134 238 137 6 241 475 246 471 3.98e-40 150
Msa1397540 MtrunA17_Chr5g0442541 27.273 495 294 16 7 468 4 465 5.04e-40 150
Msa1397540 MtrunA17_Chr6g0486251 32.950 261 149 6 215 462 211 458 6.59e-40 149
Msa1397540 MtrunA17_Chr6g0486201 32.950 261 149 6 215 462 211 458 6.59e-40 149
Msa1397540 MtrunA17_Chr8g0374971 26.367 512 299 18 1 469 5 481 1.13e-39 149
Msa1397540 MtrunA17_Chr8g0336651 30.227 397 231 16 100 472 94 468 1.16e-39 153
Msa1397540 MtrunA17_Chr8g0336651 34.737 285 159 8 203 470 971 1245 2.58e-36 143
Msa1397540 MtrunA17_Chr8g0336651 31.095 283 150 8 203 476 536 782 1.23e-30 126
Msa1397540 MtrunA17_Chr5g0401851 26.273 491 315 16 10 470 12 485 1.21e-39 149
Msa1397540 MtrunA17_Chr7g0265051 27.800 500 304 16 8 471 9 487 2.12e-39 149
Msa1397540 MtrunA17_Chr5g0429681 31.332 383 230 14 90 457 124 488 2.83e-39 148
Msa1397540 MtrunA17_Chr4g0042891 32.591 359 207 12 131 470 125 467 3.00e-39 148
Msa1397540 MtrunA17_Chr7g0235051 26.294 483 290 17 3 461 6 446 6.24e-39 147
Msa1397540 MtrunA17_Chr6g0462541 30.027 373 215 13 106 457 105 452 7.35e-39 147
Msa1397540 MtrunA17_Chr6g0449931 33.453 278 152 7 215 473 209 472 7.69e-39 147
Msa1397540 MtrunA17_Chr7g0250021 31.515 330 198 11 3 323 7 317 1.28e-38 143
Msa1397540 MtrunA17_Chr3g0079731 34.375 288 147 9 207 466 205 478 1.30e-38 146
Msa1397540 MtrunA17_Chr5g0403641 26.000 500 277 17 8 469 59 503 1.35e-38 147
Msa1397540 MtrunA17_Chr6g0463861 27.545 501 297 16 11 477 14 482 1.58e-38 146
Msa1397540 MtrunA17_Chr2g0294931 26.477 491 313 14 9 470 12 483 1.84e-38 146
Msa1397540 MtrunA17_Chr8g0374931 26.166 493 308 14 11 470 14 483 1.87e-38 146
Msa1397540 MtrunA17_Chr1g0153461 38.991 218 114 6 267 470 2 214 1.89e-38 139
Msa1397540 MtrunA17_Chr8g0336691 36.364 286 151 9 203 470 1109 1381 2.54e-38 149
Msa1397540 MtrunA17_Chr8g0336691 32.646 291 167 6 203 476 203 481 9.70e-38 147
Msa1397540 MtrunA17_Chr8g0336691 33.212 274 152 7 207 476 674 920 2.41e-34 137
Msa1397540 MtrunA17_Chr5g0440421 26.547 501 321 15 3 468 5 493 2.90e-38 145
Msa1397540 MtrunA17_Chr7g0218311 27.403 489 306 14 9 469 17 484 3.04e-38 145
Msa1397540 MtrunA17_Chr5g0410941 28.427 496 291 18 9 469 24 490 4.54e-38 145
Msa1397540 MtrunA17_Chr5g0416821 24.547 497 310 18 6 470 12 475 4.70e-38 145
Msa1397540 MtrunA17_Chr5g0429711 30.909 385 226 14 100 468 101 461 5.08e-38 144
Msa1397540 MtrunA17_Chr1g0173121 29.697 330 205 7 146 468 153 462 6.69e-38 144
Msa1397540 MtrunA17_Chr7g0265151 26.087 506 323 17 1 473 1 488 9.10e-38 144
Msa1397540 MtrunA17_Chr2g0294941 30.084 359 213 14 118 451 17 362 9.92e-38 142
Msa1397540 MtrunA17_Chr6g0459311 26.240 484 309 15 4 464 9 467 1.19e-37 143
Msa1397540 MtrunA17_Chr7g0275511 27.273 495 302 17 9 474 16 481 2.11e-37 143
Msa1397540 MtrunA17_Chr6g0462521 31.515 330 196 9 137 457 131 439 2.49e-37 142
Msa1397540 MtrunA17_Chr8g0334851 26.923 494 294 19 4 462 2 463 2.54e-37 142
Msa1397540 MtrunA17_Chr7g0243851 32.203 295 166 11 200 470 160 444 2.61e-37 142
Msa1397540 MtrunA17_Chr1g0159551 25.157 477 298 14 14 468 20 459 7.87e-37 141
Msa1397540 MtrunA17_Chr5g0432731 32.472 271 168 6 203 470 40 298 1.69e-36 136
Msa1397540 MtrunA17_Chr5g0428081 26.899 487 308 16 11 469 14 480 3.91e-36 139
Msa1397540 MtrunA17_Chr2g0302991 28.690 481 298 17 9 468 6 462 4.32e-36 139
Msa1397540 MtrunA17_Chr7g0265111 25.918 490 325 16 8 470 39 517 5.01e-36 140
Msa1397540 MtrunA17_Chr2g0302961 28.571 497 283 20 8 468 5 465 8.76e-36 138
Msa1397540 MtrunA17_Chr7g0243911 34.783 207 120 3 265 464 18 216 2.11e-35 131
Msa1397540 MtrunA17_Chr8g0350881 25.247 507 313 14 1 470 5 482 2.90e-35 137
Msa1397540 MtrunA17_Chr7g0243761 26.432 454 265 18 8 421 11 435 5.36e-35 136
Msa1397540 MtrunA17_Chr8g0361411 24.948 485 315 14 1 468 1 453 6.23e-35 135
Msa1397540 MtrunA17_Chr4g0069611 29.310 464 273 15 1 440 1 433 1.77e-34 134
Msa1397540 MtrunA17_Chr8g0355011 24.384 365 217 6 115 468 45 361 3.22e-34 132
Msa1397540 MtrunA17_Chr4g0042931 32.143 308 185 10 175 470 170 465 3.26e-34 134
Msa1397540 MtrunA17_Chr8g0336321 27.254 477 310 13 3 465 2 455 5.84e-34 133
Msa1397540 MtrunA17_Chr7g0243811 27.184 412 241 16 20 406 1 378 6.72e-34 131
Msa1397540 MtrunA17_Chr6g0454371 36.000 175 104 2 294 468 4 170 6.79e-34 125
Msa1397540 MtrunA17_Chr7g0243711 31.855 248 144 6 241 470 78 318 6.90e-34 130
Msa1397540 MtrunA17_Chr2g0278741 29.114 474 265 17 1 440 84 520 8.58e-34 134
Msa1397540 MtrunA17_Chr8g0382021 34.450 209 128 3 269 468 280 488 9.13e-34 133
Msa1397540 MtrunA17_Chr8g0336251 27.044 477 311 13 3 465 2 455 8.80e-33 130
Msa1397540 MtrunA17_Chr2g0278721 28.512 477 265 15 1 440 1 438 1.21e-32 132
Msa1397540 MtrunA17_Chr2g0278721 24.395 496 311 16 8 473 517 978 1.51e-25 110
Msa1397540 MtrunA17_Chr5g0409591 32.986 288 158 12 209 471 207 484 1.33e-32 129
Msa1397540 MtrunA17_Chr3g0106251 33.333 264 152 6 215 472 52 297 4.85e-32 124
Msa1397540 MtrunA17_Chr6g0466841 29.386 456 262 18 8 440 18 436 2.29e-31 125
Msa1397540 MtrunA17_Chr6g0454231 31.907 257 126 5 215 468 8 218 4.44e-31 125
Msa1397540 MtrunA17_Chr2g0302851 28.151 476 283 16 2 458 10 445 4.81e-31 125
Msa1397540 MtrunA17_Chr3g0079711 40.217 184 88 6 295 461 3 181 6.18e-31 118
Msa1397540 MtrunA17_Chr1g0196851 25.546 458 299 12 8 449 49 480 6.93e-31 125
Msa1397540 MtrunA17_Chr8g0334861 30.597 268 157 8 215 465 205 460 3.19e-30 122
Msa1397540 MtrunA17_Chr6g0466831 29.167 456 263 18 8 440 18 436 4.37e-30 122
Msa1397540 MtrunA17_Chr8g0367221 28.571 455 234 15 4 419 794 1196 6.48e-30 124
Msa1397540 MtrunA17_Chr8g0367221 28.276 435 260 14 4 419 8 409 2.19e-27 116
Msa1397540 MtrunA17_Chr8g0367221 25.245 511 294 16 1 471 1281 1743 7.19e-27 115
Msa1397540 MtrunA17_Chr5g0427571 39.362 188 103 4 268 454 102 279 4.71e-29 116
Msa1397540 MtrunA17_Chr4g0029131 25.684 475 280 17 5 449 9 440 5.48e-29 120
Msa1397540 MtrunA17_Chr7g0243611 34.653 202 120 5 213 406 77 274 8.52e-29 115
Msa1397540 MtrunA17_Chr6g0482061 24.346 497 312 17 7 467 10 478 1.37e-27 115
Msa1397540 MtrunA17_Chr6g0464091 27.612 402 262 10 8 397 18 402 1.58e-27 115
Msa1397540 MtrunA17_Chr4g0039881 28.000 475 272 21 18 468 2 430 3.27e-27 113
Msa1397540 MtrunA17_Chr7g0232351 35.233 193 104 7 201 380 194 378 4.96e-27 112
Msa1397540 MtrunA17_Chr4g0040691 27.211 441 275 15 1 424 1 412 1.29e-26 112
Msa1397540 MtrunA17_Chr7g0231631 27.615 239 150 4 241 470 37 261 2.27e-26 108
Msa1397540 MtrunA17_Chr4g0029151 25.000 468 292 17 5 449 17 448 2.52e-26 111
Msa1397540 MtrunA17_Chr8g0336261 38.406 138 77 2 294 431 4 133 3.77e-26 103
Msa1397540 MtrunA17_Chr7g0241801 26.797 459 262 18 8 449 9 410 7.53e-26 109
Msa1397540 MtrunA17_Chr7g0241781 26.535 456 267 20 8 449 9 410 2.66e-25 107
Msa1397540 MtrunA17_Chr5g0431431 32.323 198 119 2 201 398 142 324 1.52e-24 104
Msa1397540 MtrunA17_Chr4g0040711 26.637 443 275 15 1 424 1 412 3.06e-24 105
Msa1397540 MtrunA17_Chr4g0066141 37.975 158 87 5 324 470 196 353 1.51e-23 101
Msa1397540 MtrunA17_Chr2g0283041 28.745 247 157 7 204 445 201 433 4.41e-22 98.6
Msa1397540 MtrunA17_Chr8g0357361 29.412 204 131 5 208 406 57 252 1.09e-21 94.7
Msa1397540 MtrunA17_Chr3g0092031 36.571 175 104 5 267 440 2 170 1.26e-21 92.8
Msa1397540 MtrunA17_Chr8g0337381 40.323 124 62 4 345 464 6 121 6.42e-21 88.6
Msa1397540 MtrunA17_Chr2g0319731 27.211 441 267 17 1 420 18 425 1.12e-20 94.7
Msa1397540 MtrunA17_Chr2g0319761 25.966 466 293 16 1 445 1 435 5.01e-20 92.4
Msa1397540 MtrunA17_Chr2g0319801 26.802 444 265 18 1 420 1 408 6.82e-19 89.0
Msa1397540 MtrunA17_Chr2g0319791 25.862 464 294 19 1 444 1 434 1.42e-18 88.2
Msa1397540 MtrunA17_Chr8g0377911 34.028 144 83 3 9 150 8 141 9.91e-18 80.5
Msa1397540 MtrunA17_Chr4g0029161 23.191 470 262 19 5 445 9 408 2.49e-17 84.0
Msa1397540 MtrunA17_Chr6g0453981 28.700 223 142 6 132 340 8 227 8.85e-17 79.7
Msa1397540 MtrunA17_Chr2g0321331 37.584 149 81 6 251 393 65 207 1.56e-16 79.7
Msa1397540 MtrunA17_Chr2g0319751 31.250 208 125 8 221 424 696 889 1.24e-15 80.1
Msa1397540 MtrunA17_Chr2g0319751 26.609 233 121 10 221 444 219 410 1.83e-12 70.1
Msa1397540 MtrunA17_Chr7g0243731 42.254 71 40 1 337 406 4 74 8.81e-15 69.3
Msa1397540 MtrunA17_Chr5g0426411 33.537 164 97 6 1 156 1 160 2.32e-14 71.2
Msa1397540 MtrunA17_Chr5g0442501 25.846 325 200 12 9 317 6 305 4.05e-14 73.2
Msa1397540 MtrunA17_Chr5g0442551 25.632 277 145 12 102 351 53 295 2.85e-13 70.5
Msa1397540 MtrunA17_Chr6g0453941 27.670 206 133 7 126 316 54 258 4.39e-13 69.7
Msa1397540 MtrunA17_Chr8g0336271 32.571 175 91 9 1 161 1 162 1.75e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1397540 AT4G15480.1 54.095 464 206 6 8 468 19 478 3.16e-180 514
Msa1397540 AT3G21560.1 51.899 474 202 10 8 468 12 472 8.55e-169 485
Msa1397540 AT4G15500.1 50.943 477 209 10 8 475 9 469 1.05e-163 471
Msa1397540 AT4G15490.1 48.745 478 229 9 1 471 1 469 6.54e-162 467
Msa1397540 AT2G23260.1 37.681 483 256 16 1 468 1 453 3.34e-95 295
Msa1397540 AT1G05680.1 34.904 467 274 12 7 465 5 449 6.99e-90 281
Msa1397540 AT1G05675.1 34.542 469 273 11 7 465 5 449 8.14e-89 279
Msa1397540 AT2G43820.1 34.100 478 266 13 8 471 7 449 2.63e-88 277
Msa1397540 AT2G23250.1 36.797 462 261 14 11 468 1 435 3.86e-87 274
Msa1397540 AT2G31750.1 34.937 478 277 13 1 468 1 454 6.04e-87 274
Msa1397540 AT2G31750.2 34.937 478 277 13 1 468 1 454 1.49e-86 274
Msa1397540 AT4G15550.1 35.062 482 269 13 8 467 13 472 2.83e-84 268
Msa1397540 AT4G14090.1 35.158 475 272 11 2 467 7 454 1.77e-83 265
Msa1397540 AT2G43840.2 34.468 470 271 13 8 469 7 447 8.32e-83 263
Msa1397540 AT2G43840.1 34.395 471 270 14 8 469 7 447 1.74e-82 262
Msa1397540 AT2G31790.1 32.716 486 273 12 1 465 1 453 1.46e-80 258
Msa1397540 AT1G05560.1 35.113 487 250 16 8 468 5 451 2.90e-80 257
Msa1397540 AT1G05560.2 35.113 487 250 16 8 468 55 501 6.11e-80 258
Msa1397540 AT1G22400.1 32.043 465 281 11 8 451 13 463 1.76e-75 245
Msa1397540 AT1G24100.1 32.484 471 285 12 8 468 11 458 6.66e-75 243
Msa1397540 AT1G05530.1 33.333 480 277 13 5 468 2 454 7.02e-74 240
Msa1397540 AT1G22340.1 32.231 484 290 13 8 468 13 481 3.84e-72 236
Msa1397540 AT1G22380.1 31.429 490 299 13 1 468 6 480 8.08e-72 236
Msa1397540 AT1G22360.1 30.957 491 302 12 1 468 1 477 2.13e-71 234
Msa1397540 AT1G78270.1 31.377 494 306 13 2 475 7 487 1.84e-70 232
Msa1397540 AT2G36970.1 30.480 479 303 10 8 471 10 473 1.90e-69 229
Msa1397540 AT1G22360.2 29.939 491 295 12 1 468 1 465 1.07e-67 224
Msa1397540 AT2G15490.1 31.557 488 299 14 8 471 7 483 4.33e-66 221
Msa1397540 AT2G15490.3 31.893 486 297 14 8 471 7 480 6.68e-66 220
Msa1397540 AT1G22370.2 30.105 475 306 12 8 468 13 475 1.86e-65 219
Msa1397540 AT2G15480.1 30.675 489 299 14 8 471 10 483 2.14e-63 213
Msa1397540 AT2G15480.2 29.860 499 300 15 8 471 10 493 2.45e-60 206
Msa1397540 AT2G36770.1 29.084 502 294 15 8 471 14 491 7.06e-58 199
Msa1397540 AT2G28080.1 30.407 467 304 10 12 471 22 474 1.42e-56 195
Msa1397540 AT4G34138.1 29.607 483 309 12 5 468 8 478 7.72e-54 188
Msa1397540 AT2G36760.1 28.513 491 311 13 8 471 14 491 8.44e-54 188
Msa1397540 AT2G36800.1 28.689 488 309 13 8 468 12 487 1.43e-53 187
Msa1397540 AT5G05870.1 30.271 479 298 12 1 468 1 454 2.96e-53 186
Msa1397540 AT2G36750.1 29.352 494 296 16 8 468 10 483 6.83e-53 186
Msa1397540 AT3G46660.1 30.165 484 283 17 5 470 11 457 1.06e-52 184
Msa1397540 AT2G36780.1 29.116 498 293 15 8 468 14 488 1.14e-52 185
Msa1397540 AT5G59590.1 28.753 473 294 13 7 468 9 449 4.30e-52 182
Msa1397540 AT4G34131.1 28.600 493 301 17 8 470 10 481 1.60e-51 182
Msa1397540 AT2G30140.1 30.189 477 283 16 8 470 13 453 3.36e-50 177
Msa1397540 AT2G36790.1 29.817 493 310 15 8 475 13 494 4.38e-50 178
Msa1397540 AT5G59580.1 28.092 477 291 17 8 469 9 448 1.33e-49 176
Msa1397540 AT2G30140.2 30.271 479 279 17 8 470 13 452 1.35e-49 176
Msa1397540 AT3G46700.1 29.079 478 284 16 8 470 9 446 1.47e-49 176
Msa1397540 AT4G34135.1 29.249 506 299 17 1 470 1 483 1.82e-49 176
Msa1397540 AT3G46650.1 28.931 477 269 13 4 464 6 428 2.78e-49 175
Msa1397540 AT3G11340.1 28.998 469 300 12 4 468 5 444 2.84e-49 175
Msa1397540 AT3G53160.1 27.968 497 320 14 1 471 1 485 3.59e-48 173
Msa1397540 AT3G46670.1 28.992 476 287 15 5 465 6 445 5.57e-48 171
Msa1397540 AT2G30150.2 30.103 485 270 19 8 468 13 452 1.01e-47 171
Msa1397540 AT2G30150.1 30.271 479 265 19 14 468 3 436 1.49e-46 167
Msa1397540 AT3G55710.1 28.184 479 294 15 8 468 8 454 1.75e-46 168
Msa1397540 AT1G73880.1 29.039 489 293 18 7 472 13 470 3.78e-46 167
Msa1397540 AT3G22250.1 29.221 462 269 17 9 441 9 441 5.74e-46 166
Msa1397540 AT3G21780.1 26.423 492 304 14 8 468 4 468 9.34e-46 166
Msa1397540 AT3G55700.1 27.329 483 303 14 1 468 1 450 9.69e-46 166
Msa1397540 AT5G17050.1 26.722 479 307 10 6 470 10 458 2.61e-45 164
Msa1397540 AT5G14860.1 29.779 497 298 16 1 468 1 475 3.15e-45 165
Msa1397540 AT3G46690.1 28.033 478 286 14 8 466 9 447 3.27e-45 164
Msa1397540 AT3G21800.1 26.680 506 289 18 9 468 6 475 4.42e-45 164
Msa1397540 AT4G15280.1 27.800 500 292 15 8 468 4 473 5.39e-45 164
Msa1397540 AT4G15280.2 27.800 500 292 15 8 468 36 505 9.69e-45 164
Msa1397540 AT4G01070.1 28.719 484 298 15 1 461 1 460 1.16e-44 163
Msa1397540 AT3G21790.1 26.078 510 293 14 8 468 4 478 2.57e-44 162
Msa1397540 AT5G05860.1 30.335 478 277 21 8 468 9 447 2.98e-44 161
Msa1397540 AT5G38040.1 28.118 473 279 17 16 468 18 449 7.17e-44 160
Msa1397540 AT2G16890.2 29.218 486 292 20 8 468 9 467 2.36e-43 159
Msa1397540 AT3G46680.1 28.302 477 292 14 4 465 5 446 2.64e-43 159
Msa1397540 AT1G22370.1 30.612 294 191 5 180 468 20 305 4.33e-43 155
Msa1397540 AT1G10400.1 29.435 496 287 19 7 473 6 467 6.25e-43 158
Msa1397540 AT5G03490.1 29.228 479 288 19 8 469 19 463 9.91e-43 157
Msa1397540 AT1G01420.2 29.072 485 295 15 3 463 5 464 1.47e-42 157
Msa1397540 AT4G15260.1 29.396 381 205 12 124 468 2 354 1.54e-42 154
Msa1397540 AT3G02100.1 27.178 482 301 16 8 471 13 462 1.54e-42 157
Msa1397540 AT1G01420.1 29.072 485 295 15 3 463 2 461 1.63e-42 157
Msa1397540 AT3G46720.1 28.482 481 277 18 8 469 9 441 5.20e-42 155
Msa1397540 AT3G21760.1 27.163 497 306 15 8 468 4 480 5.78e-42 156
Msa1397540 AT5G38010.1 28.216 482 295 15 4 468 6 453 6.09e-42 155
Msa1397540 AT1G30530.1 26.915 483 291 14 6 468 10 450 6.28e-42 155
Msa1397540 AT2G29740.1 26.389 504 305 15 1 468 1 474 8.06e-42 155
Msa1397540 AT3G21750.1 27.778 504 296 16 8 477 4 473 1.71e-41 154
Msa1397540 AT2G26480.1 27.349 479 303 15 1 468 1 445 2.19e-41 154
Msa1397540 AT5G26310.1 26.000 500 296 19 8 470 7 469 2.53e-41 154
Msa1397540 AT3G16520.3 38.806 268 144 10 207 467 204 458 3.85e-41 153
Msa1397540 AT4G36770.1 27.101 476 282 15 8 451 4 446 3.13e-40 150
Msa1397540 AT1G51210.1 28.062 449 268 16 8 440 20 429 4.86e-40 149
Msa1397540 AT5G17040.1 24.153 472 316 11 5 468 2 439 9.06e-40 149
Msa1397540 AT5G66690.1 32.500 280 151 7 215 470 204 469 1.86e-39 149
Msa1397540 AT5G17030.1 25.417 480 315 10 6 472 10 459 2.21e-39 148
Msa1397540 AT3G16520.1 39.163 263 137 11 207 462 204 450 3.07e-39 148
Msa1397540 AT5G05880.1 26.403 481 312 13 1 470 1 450 3.33e-39 147
Msa1397540 AT3G16520.2 39.526 253 133 10 207 452 204 443 3.78e-39 147
Msa1397540 AT3G50740.1 25.586 512 289 18 8 470 7 475 1.42e-38 147
Msa1397540 AT1G01390.1 28.211 475 278 15 3 442 2 448 1.46e-38 146
Msa1397540 AT1G01390.2 28.211 475 278 15 3 442 19 465 1.53e-38 147
Msa1397540 AT5G12890.1 27.105 487 314 14 6 466 8 479 1.75e-38 146
Msa1397540 AT1G07250.1 34.221 263 162 5 215 473 222 477 3.04e-38 145
Msa1397540 AT2G29710.1 26.176 489 306 18 6 468 3 462 7.24e-38 144
Msa1397540 AT3G53150.1 26.988 415 279 11 8 406 22 428 1.29e-37 144
Msa1397540 AT5G05900.1 28.041 485 294 18 1 468 1 447 1.70e-37 143
Msa1397540 AT2G29750.1 25.873 487 328 12 1 468 1 473 5.77e-37 142
Msa1397540 AT2G29730.1 24.587 484 320 16 6 468 3 462 1.46e-36 140
Msa1397540 AT1G07260.1 31.022 274 170 4 202 468 210 471 2.07e-36 140
Msa1397540 AT5G05890.1 26.122 490 306 14 1 470 1 454 2.33e-36 140
Msa1397540 AT2G18560.1 31.180 356 197 12 136 464 38 372 3.43e-36 138
Msa1397540 AT2G16890.3 28.959 442 263 19 3 420 4 418 1.02e-35 137
Msa1397540 AT2G18570.1 27.016 496 285 18 8 464 5 462 1.35e-35 138
Msa1397540 AT5G17040.2 30.038 263 162 4 209 468 94 337 1.28e-33 130
Msa1397540 AT1G07240.1 28.412 359 231 12 124 468 129 475 3.97e-33 131
Msa1397540 AT5G49690.1 25.577 477 320 13 4 472 6 455 4.56e-33 130
Msa1397540 AT2G23210.1 34.615 286 159 12 7 284 9 274 8.03e-32 124
Msa1397540 AT5G65550.1 26.735 490 295 18 8 470 9 461 1.51e-31 126
Msa1397540 AT4G27560.1 27.309 498 286 20 8 478 7 455 9.72e-31 124
Msa1397540 AT5G54010.1 25.813 492 300 17 1 470 1 449 1.10e-30 124
Msa1397540 AT4G27570.1 26.860 484 288 17 8 470 7 445 1.43e-29 120
Msa1397540 AT1G06000.1 25.000 480 285 17 8 468 10 433 1.46e-29 120
Msa1397540 AT5G53990.1 27.515 487 280 18 6 470 4 439 4.00e-29 119
Msa1397540 AT3G29630.1 26.875 480 309 14 1 471 1 447 1.42e-28 118
Msa1397540 AT5G54060.1 25.558 493 306 18 2 468 5 462 3.10e-27 114
Msa1397540 AT1G50580.1 28.157 483 295 18 1 470 1 444 4.77e-27 113
Msa1397540 AT2G22590.1 24.356 505 293 16 2 466 9 464 1.65e-24 106
Msa1397540 AT3G29630.2 25.470 479 291 14 1 471 1 421 3.30e-24 105
Msa1397540 AT1G64910.1 25.316 474 291 16 8 462 6 435 4.58e-24 104
Msa1397540 AT4G09500.2 26.456 412 258 13 4 405 2 378 6.75e-24 104
Msa1397540 AT5G37950.2 33.721 172 100 4 209 380 180 337 3.63e-23 100
Msa1397540 AT5G37950.1 33.721 172 100 4 209 380 186 343 4.22e-23 100
Msa1397540 AT2G22930.1 24.217 479 310 14 4 470 2 439 9.17e-23 100
Msa1397540 AT1G64920.1 23.422 491 309 14 8 475 6 452 1.50e-21 97.4
Msa1397540 AT4G34135.2 26.879 346 202 14 1 315 1 326 5.84e-21 94.4
Msa1397540 AT4G01070.2 27.100 369 224 14 1 347 1 346 9.21e-19 87.8
Msa1397540 AT4G09500.1 25.245 408 243 11 4 405 2 353 2.15e-18 87.8

Find 94 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGGAATCTTGATGAATTTA+TGG 0.173256 tig0022164:-47811 Msa1397540:CDS
AAACCACCTTCGGAGGAATT+AGG 0.182104 tig0022164:-48242 Msa1397540:CDS
TTTCACAATCCAAATATTAA+AGG 0.182554 tig0022164:-48452 Msa1397540:CDS
TTTAGTCAATTTCCATTTCT+AGG 0.225535 tig0022164:-48611 Msa1397540:CDS
GTATTCCTTCTGCTTTGTTA+TGG 0.253317 tig0022164:-48778 Msa1397540:CDS
AGAAATGGAAATTGACTAAA+AGG 0.259932 tig0022164:+48614 None:intergenic
TGAAATAGCATATGGGTTAT+TGG 0.264850 tig0022164:-48294 Msa1397540:CDS
CCTAAAAGATTTCCTCTTAG+AGG 0.280977 tig0022164:+48941 None:intergenic
CTAAAAGGATGAAGAAAATC+TGG 0.307810 tig0022164:+48629 None:intergenic
AACCACCTTCGGAGGAATTA+GGG 0.329917 tig0022164:-48241 Msa1397540:CDS
AGTCACAAATGCAAAATTCT+TGG 0.338538 tig0022164:-48021 Msa1397540:CDS
TCTGTGGTTTATATTTCTTT+TGG 0.340949 tig0022164:-48350 Msa1397540:CDS
ATAGAACATCTCAAACTTGT+TGG 0.346592 tig0022164:-48914 Msa1397540:CDS
GGTAATTGAACATCAATATA+AGG 0.356864 tig0022164:+48680 None:intergenic
ATCAATGGAAGCACTTACTT+TGG 0.370900 tig0022164:-48081 Msa1397540:CDS
CAAGTGAATGAAATAGCATA+TGG 0.385064 tig0022164:-48302 Msa1397540:CDS
ATATAAACCACAGAACCTTT+TGG 0.387524 tig0022164:+48359 None:intergenic
AGAGAGGAAAAGTTGTGAAA+TGG 0.387921 tig0022164:-48172 Msa1397540:CDS
AAGATGAGTGTCCCTAGAAA+TGG 0.398955 tig0022164:+48599 None:intergenic
GTAGGGATTAGATTGGGTTA+TGG 0.399166 tig0022164:-47984 Msa1397540:CDS
CTATAACTATTTCCACAAAC+TGG 0.401688 tig0022164:-48726 Msa1397540:CDS
ATTGTTTATGATACATGAAA+AGG 0.404572 tig0022164:+48841 None:intergenic
TTTGCCAGATGGGTTCTTAG+AGG 0.405833 tig0022164:-48204 Msa1397540:CDS
TGCTTATTGGAAGCTACAAC+AGG 0.405883 tig0022164:-47918 Msa1397540:CDS
TCAATGGAAGCACTTACTTT+GGG 0.408798 tig0022164:-48080 Msa1397540:CDS
ATCATGCTCTAGTTCTTCAT+AGG 0.422004 tig0022164:+48529 None:intergenic
TCACAAACCCATGGAACAAA+AGG 0.449755 tig0022164:+48818 None:intergenic
TTTGGTGTAGGGATTAGATT+GGG 0.453004 tig0022164:-47990 Msa1397540:CDS
TTAGTCAATTTCCATTTCTA+GGG 0.453241 tig0022164:-48610 Msa1397540:CDS
GTGGGTATTAAAACCACCTT+CGG 0.463856 tig0022164:-48252 Msa1397540:CDS
TTGATCATTTGAGAAACAAA+TGG 0.467441 tig0022164:+48887 None:intergenic
GTGAGAGAACCATCACCAAT+TGG 0.469242 tig0022164:+49001 None:intergenic
GGGTTTATGTGTCCTTGTGC+TGG 0.472078 tig0022164:+49142 None:intergenic
TTGTTTATGATACATGAAAA+GGG 0.474261 tig0022164:+48842 None:intergenic
GAGGATGCGGTTGCCGTAGG+TGG 0.478660 tig0022164:-47843 Msa1397540:CDS
AAGGGAAACGTACCAGTTTG+TGG 0.480432 tig0022164:+48714 None:intergenic
AATGTTGACATTTCCAGCAT+GGG 0.490713 tig0022164:-48051 Msa1397540:CDS
CAATGTTGACATTTCCAGCA+TGG 0.493052 tig0022164:-48052 Msa1397540:CDS
AGCAAAGTGTCTTGCTGCAA+AGG 0.493150 tig0022164:-49107 Msa1397540:CDS
TTGTATTTAAGAACTTGAAA+AGG 0.493342 tig0022164:+48659 None:intergenic
AAGAACATAATTTGCCAGAT+GGG 0.496155 tig0022164:-48214 Msa1397540:CDS
GAAGATGATCATCCTCTAAG+AGG 0.496341 tig0022164:-48953 Msa1397540:CDS
AAAGAACATAATTTGCCAGA+TGG 0.501406 tig0022164:-48215 Msa1397540:CDS
CATTCACTTGTTCTTGAGGA+AGG 0.503631 tig0022164:+48315 None:intergenic
TTGTGGTTGGAATTCATCAA+TGG 0.506287 tig0022164:-48096 Msa1397540:CDS
GTTTCCTCTAAGAACCCATC+TGG 0.511421 tig0022164:+48200 None:intergenic
GAAGAAAGCGGCAGAGGATG+CGG 0.514863 tig0022164:-47856 Msa1397540:CDS
GTTTCGTAACACATTGTGGT+TGG 0.516570 tig0022164:-48109 Msa1397540:CDS
ATATAAGGTTCTGTTTCTGA+AGG 0.523191 tig0022164:+48695 None:intergenic
GTGCTGGATAAGAGATAAGA+AGG 0.529561 tig0022164:+49158 None:intergenic
ATTTCATTCACTTGTTCTTG+AGG 0.531660 tig0022164:+48311 None:intergenic
AAGGATATGAGTGTTTGCTT+CGG 0.536727 tig0022164:+49177 None:intergenic
TCAATCTTCGTAAGACCCAT+TGG 0.541457 tig0022164:-48482 Msa1397540:CDS
GTGACTTGATCACCCCATGC+TGG 0.545234 tig0022164:+48038 None:intergenic
GCAAAGTGTCTTGCTGCAAA+GGG 0.545350 tig0022164:-49106 Msa1397540:CDS
TTTAGCCCTAATTCCTCCGA+AGG 0.547618 tig0022164:+48236 None:intergenic
TAAAAGGATGAAGAAAATCT+GGG 0.548773 tig0022164:+48630 None:intergenic
ATATTTGGATTGTGAAACAA+TGG 0.550835 tig0022164:+48458 None:intergenic
TGGCTAAACACAAAGCCAAA+AGG 0.552067 tig0022164:-48374 Msa1397540:CDS
CACTTTGCTAGTCTAAGAAG+AGG 0.557139 tig0022164:+49121 None:intergenic
TTGTGAAACAATGGACCAAT+GGG 0.563623 tig0022164:+48467 None:intergenic
GCAGAGGATGCGGTTGCCGT+AGG 0.563630 tig0022164:-47846 Msa1397540:CDS
CACAAAGCCAAAAGGTTCTG+TGG 0.563752 tig0022164:-48366 Msa1397540:CDS
GAAGTGGAAGAAAGCGGCAG+AGG 0.565645 tig0022164:-47862 Msa1397540:CDS
TGAGCCAATACTTCTTCTTG+TGG 0.573069 tig0022164:+48146 None:intergenic
CCGTAGGTGGATCCTCTGAT+CGG 0.574855 tig0022164:-47830 Msa1397540:CDS
TTCATCACAACAGAGAAAGC+TGG 0.577898 tig0022164:-49070 Msa1397540:CDS
GAGTCCACAAGAAGAAGTAT+TGG 0.578318 tig0022164:-48150 Msa1397540:CDS
AGCCCTAATTCCTCCGAAGG+TGG 0.578340 tig0022164:+48239 None:intergenic
TTAGAGGAAACAAGTGAGAG+AGG 0.578410 tig0022164:-48188 Msa1397540:CDS
TCACTCACTCCAATTGGTGA+TGG 0.584522 tig0022164:-49010 Msa1397540:CDS
TGAATCCATAACAAAGCAGA+AGG 0.585284 tig0022164:+48773 None:intergenic
CTTATCTCTTATCCAGCACA+AGG 0.587114 tig0022164:-49154 Msa1397540:CDS
TATAAGGTTCTGTTTCTGAA+GGG 0.593373 tig0022164:+48696 None:intergenic
ACTTTGCTAGTCTAAGAAGA+GGG 0.596564 tig0022164:+49122 None:intergenic
CATGCTGGAAATGTCAACAT+TGG 0.596885 tig0022164:+48053 None:intergenic
AAGTGAATGAAATAGCATAT+GGG 0.601672 tig0022164:-48301 Msa1397540:CDS
TTCATCAAGATTCCGATCAG+AGG 0.604344 tig0022164:+47818 None:intergenic
TAAATTAGTAACAAGAGATG+AGG 0.604740 tig0022164:-47949 Msa1397540:CDS
GTTACGAAACATGCCACTGA+TGG 0.608593 tig0022164:+48122 None:intergenic
ATGATTGTAAAATTATAGAG+TGG 0.612349 tig0022164:-48394 Msa1397540:CDS
CTTATTGGAAGCTACAACAG+GGG 0.618372 tig0022164:-47916 Msa1397540:CDS
GGTATTAAAACCACCTTCGG+AGG 0.626039 tig0022164:-48249 Msa1397540:CDS
CCGATCAGAGGATCCACCTA+CGG 0.631198 tig0022164:+47830 None:intergenic
TCGGAATATTAACAGTGCCA+CGG 0.633212 tig0022164:+47775 None:intergenic
ATTGTGAAACAATGGACCAA+TGG 0.633300 tig0022164:+48466 None:intergenic
ATGTTGACATTTCCAGCATG+GGG 0.637801 tig0022164:-48050 Msa1397540:CDS
TGCAATGAAGTGGAAGAAAG+CGG 0.637939 tig0022164:-47868 Msa1397540:CDS
GCATGTTTCGTAACACATTG+TGG 0.641634 tig0022164:-48113 Msa1397540:CDS
TCAGCTACATCACAAACCCA+TGG 0.646612 tig0022164:+48809 None:intergenic
GCTTATTGGAAGCTACAACA+GGG 0.662731 tig0022164:-47917 Msa1397540:CDS
AGTATTGGCTCATCCATCAG+TGG 0.681283 tig0022164:-48135 Msa1397540:CDS
ATGGAAGACATTCAGAACCG+TGG 0.696567 tig0022164:-47792 Msa1397540:CDS
TGTGATGTAGCTGATGAACA+TGG 0.703527 tig0022164:-48800 Msa1397540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTTTATGATACATGAAAA+GGG + tig0022164:48112-48131 None:intergenic 20.0%
!! ATTGTTTATGATACATGAAA+AGG + tig0022164:48113-48132 None:intergenic 20.0%
!! TTGTATTTAAGAACTTGAAA+AGG + tig0022164:48295-48314 None:intergenic 20.0%
!! TTTCACAATCCAAATATTAA+AGG - tig0022164:48499-48518 Msa1397540:CDS 20.0%
!!! TTTTTTGCACCTTTAATATT+TGG + tig0022164:48511-48530 None:intergenic 20.0%
!! ATGATTGTAAAATTATAGAG+TGG - tig0022164:48557-48576 Msa1397540:CDS 20.0%
!! TTGTTTATGATACATGAAAA+GGG + tig0022164:48112-48131 None:intergenic 20.0%
!! ATTGTTTATGATACATGAAA+AGG + tig0022164:48113-48132 None:intergenic 20.0%
!! TTGTATTTAAGAACTTGAAA+AGG + tig0022164:48295-48314 None:intergenic 20.0%
!! TTTCACAATCCAAATATTAA+AGG - tig0022164:48499-48518 Msa1397540:CDS 20.0%
!!! TTTTTTGCACCTTTAATATT+TGG + tig0022164:48511-48530 None:intergenic 20.0%
!! ATGATTGTAAAATTATAGAG+TGG - tig0022164:48557-48576 Msa1397540:CDS 20.0%
! TTGATCATTTGAGAAACAAA+TGG + tig0022164:48067-48086 None:intergenic 25.0%
! GGTAATTGAACATCAATATA+AGG + tig0022164:48274-48293 None:intergenic 25.0%
! TAAAAGGATGAAGAAAATCT+GGG + tig0022164:48324-48343 None:intergenic 25.0%
! AGAAATGGAAATTGACTAAA+AGG + tig0022164:48340-48359 None:intergenic 25.0%
! TTTAGTCAATTTCCATTTCT+AGG - tig0022164:48340-48359 Msa1397540:CDS 25.0%
! TTAGTCAATTTCCATTTCTA+GGG - tig0022164:48341-48360 Msa1397540:CDS 25.0%
! ATATTTGGATTGTGAAACAA+TGG + tig0022164:48496-48515 None:intergenic 25.0%
!! TCTGTGGTTTATATTTCTTT+TGG - tig0022164:48601-48620 Msa1397540:CDS 25.0%
! AAGTGAATGAAATAGCATAT+GGG - tig0022164:48650-48669 Msa1397540:CDS 25.0%
!! AAATTCTTGGTAGATGTTTT+TGG - tig0022164:48943-48962 Msa1397540:CDS 25.0%
! TAAATTAGTAACAAGAGATG+AGG - tig0022164:49002-49021 Msa1397540:CDS 25.0%
! TTGATCATTTGAGAAACAAA+TGG + tig0022164:48067-48086 None:intergenic 25.0%
! GGTAATTGAACATCAATATA+AGG + tig0022164:48274-48293 None:intergenic 25.0%
! TAAAAGGATGAAGAAAATCT+GGG + tig0022164:48324-48343 None:intergenic 25.0%
! AGAAATGGAAATTGACTAAA+AGG + tig0022164:48340-48359 None:intergenic 25.0%
! TTTAGTCAATTTCCATTTCT+AGG - tig0022164:48340-48359 Msa1397540:CDS 25.0%
! TTAGTCAATTTCCATTTCTA+GGG - tig0022164:48341-48360 Msa1397540:CDS 25.0%
! ATATTTGGATTGTGAAACAA+TGG + tig0022164:48496-48515 None:intergenic 25.0%
!! TCTGTGGTTTATATTTCTTT+TGG - tig0022164:48601-48620 Msa1397540:CDS 25.0%
! AAGTGAATGAAATAGCATAT+GGG - tig0022164:48650-48669 Msa1397540:CDS 25.0%
!! AAATTCTTGGTAGATGTTTT+TGG - tig0022164:48943-48962 Msa1397540:CDS 25.0%
! TAAATTAGTAACAAGAGATG+AGG - tig0022164:49002-49021 Msa1397540:CDS 25.0%
!!! ACTTTTGAGTTCTTAGATGA+TGG - tig0022164:47971-47990 Msa1397540:CDS 30.0%
ATAGAACATCTCAAACTTGT+TGG - tig0022164:48037-48056 Msa1397540:CDS 30.0%
! TAAACAATCCTTTTGTTCCA+TGG - tig0022164:48125-48144 Msa1397540:CDS 30.0%
! AAACAATCCTTTTGTTCCAT+GGG - tig0022164:48126-48145 Msa1397540:CDS 30.0%
CTATAACTATTTCCACAAAC+TGG - tig0022164:48225-48244 Msa1397540:CDS 30.0%
!! TATAAGGTTCTGTTTCTGAA+GGG + tig0022164:48258-48277 None:intergenic 30.0%
!! ATATAAGGTTCTGTTTCTGA+AGG + tig0022164:48259-48278 None:intergenic 30.0%
CTAAAAGGATGAAGAAAATC+TGG + tig0022164:48325-48344 None:intergenic 30.0%
! AAAGGTGCAAAAAATATTCG+TGG - tig0022164:48517-48536 Msa1397540:CDS 30.0%
! ATATAAACCACAGAACCTTT+TGG + tig0022164:48595-48614 None:intergenic 30.0%
ATTTCATTCACTTGTTCTTG+AGG + tig0022164:48643-48662 None:intergenic 30.0%
CAAGTGAATGAAATAGCATA+TGG - tig0022164:48649-48668 Msa1397540:CDS 30.0%
! TGAAATAGCATATGGGTTAT+TGG - tig0022164:48657-48676 Msa1397540:CDS 30.0%
!! ATTCTCAAGTATCGTTTTTG+TGG - tig0022164:48680-48699 Msa1397540:CDS 30.0%
!! TTCTCAAGTATCGTTTTTGT+GGG - tig0022164:48681-48700 Msa1397540:CDS 30.0%
! AAAGAACATAATTTGCCAGA+TGG - tig0022164:48736-48755 Msa1397540:CDS 30.0%
! AAGAACATAATTTGCCAGAT+GGG - tig0022164:48737-48756 Msa1397540:CDS 30.0%
AGTCACAAATGCAAAATTCT+TGG - tig0022164:48930-48949 Msa1397540:CDS 30.0%
TGAAGAAAAATGCAATGAAG+TGG - tig0022164:49073-49092 Msa1397540:CDS 30.0%
TCGGAATCTTGATGAATTTA+TGG - tig0022164:49140-49159 Msa1397540:CDS 30.0%
!!! ACTTTTGAGTTCTTAGATGA+TGG - tig0022164:47971-47990 Msa1397540:CDS 30.0%
ATAGAACATCTCAAACTTGT+TGG - tig0022164:48037-48056 Msa1397540:CDS 30.0%
! TAAACAATCCTTTTGTTCCA+TGG - tig0022164:48125-48144 Msa1397540:CDS 30.0%
! AAACAATCCTTTTGTTCCAT+GGG - tig0022164:48126-48145 Msa1397540:CDS 30.0%
CTATAACTATTTCCACAAAC+TGG - tig0022164:48225-48244 Msa1397540:CDS 30.0%
!! TATAAGGTTCTGTTTCTGAA+GGG + tig0022164:48258-48277 None:intergenic 30.0%
!! ATATAAGGTTCTGTTTCTGA+AGG + tig0022164:48259-48278 None:intergenic 30.0%
CTAAAAGGATGAAGAAAATC+TGG + tig0022164:48325-48344 None:intergenic 30.0%
! AAAGGTGCAAAAAATATTCG+TGG - tig0022164:48517-48536 Msa1397540:CDS 30.0%
! ATATAAACCACAGAACCTTT+TGG + tig0022164:48595-48614 None:intergenic 30.0%
ATTTCATTCACTTGTTCTTG+AGG + tig0022164:48643-48662 None:intergenic 30.0%
CAAGTGAATGAAATAGCATA+TGG - tig0022164:48649-48668 Msa1397540:CDS 30.0%
! TGAAATAGCATATGGGTTAT+TGG - tig0022164:48657-48676 Msa1397540:CDS 30.0%
!! ATTCTCAAGTATCGTTTTTG+TGG - tig0022164:48680-48699 Msa1397540:CDS 30.0%
!! TTCTCAAGTATCGTTTTTGT+GGG - tig0022164:48681-48700 Msa1397540:CDS 30.0%
! AAAGAACATAATTTGCCAGA+TGG - tig0022164:48736-48755 Msa1397540:CDS 30.0%
! AAGAACATAATTTGCCAGAT+GGG - tig0022164:48737-48756 Msa1397540:CDS 30.0%
AGTCACAAATGCAAAATTCT+TGG - tig0022164:48930-48949 Msa1397540:CDS 30.0%
TGAAGAAAAATGCAATGAAG+TGG - tig0022164:49073-49092 Msa1397540:CDS 30.0%
TCGGAATCTTGATGAATTTA+TGG - tig0022164:49140-49159 Msa1397540:CDS 30.0%
AAGGATATGAGTGTTTGCTT+CGG + tig0022164:47777-47796 None:intergenic 35.0%
! ACTTTGCTAGTCTAAGAAGA+GGG + tig0022164:47832-47851 None:intergenic 35.0%
GAAAAATCACTCACTCCAAT+TGG - tig0022164:47935-47954 Msa1397540:CDS 35.0%
CCTAAAAGATTTCCTCTTAG+AGG + tig0022164:48013-48032 None:intergenic 35.0%
!! CCTCTAAGAGGAAATCTTTT+AGG - tig0022164:48010-48029 Msa1397540:CDS 35.0%
! GTATTCCTTCTGCTTTGTTA+TGG - tig0022164:48173-48192 Msa1397540:CDS 35.0%
TGAATCCATAACAAAGCAGA+AGG + tig0022164:48181-48200 None:intergenic 35.0%
!! ATCATGCTCTAGTTCTTCAT+AGG + tig0022164:48425-48444 None:intergenic 35.0%
TTGTGAAACAATGGACCAAT+GGG + tig0022164:48487-48506 None:intergenic 35.0%
ATTGTGAAACAATGGACCAA+TGG + tig0022164:48488-48507 None:intergenic 35.0%
AGAGAGGAAAAGTTGTGAAA+TGG - tig0022164:48779-48798 Msa1397540:CDS 35.0%
TTGTGGTTGGAATTCATCAA+TGG - tig0022164:48855-48874 Msa1397540:CDS 35.0%
!! ATCAATGGAAGCACTTACTT+TGG - tig0022164:48870-48889 Msa1397540:CDS 35.0%
!! TCAATGGAAGCACTTACTTT+GGG - tig0022164:48871-48890 Msa1397540:CDS 35.0%
AATGTTGACATTTCCAGCAT+GGG - tig0022164:48900-48919 Msa1397540:CDS 35.0%
!!! TTGGTAGATGTTTTTGGTGT+AGG - tig0022164:48949-48968 Msa1397540:CDS 35.0%
!!! TGGTAGATGTTTTTGGTGTA+GGG - tig0022164:48950-48969 Msa1397540:CDS 35.0%
!! TTTTGGTGTAGGGATTAGAT+TGG - tig0022164:48960-48979 Msa1397540:CDS 35.0%
! TTTGGTGTAGGGATTAGATT+GGG - tig0022164:48961-48980 Msa1397540:CDS 35.0%
!! TGAGGTGAAAAAGTGCTTAT+TGG - tig0022164:49020-49039 Msa1397540:CDS 35.0%
AAGGATATGAGTGTTTGCTT+CGG + tig0022164:47777-47796 None:intergenic 35.0%
! ACTTTGCTAGTCTAAGAAGA+GGG + tig0022164:47832-47851 None:intergenic 35.0%
GAAAAATCACTCACTCCAAT+TGG - tig0022164:47935-47954 Msa1397540:CDS 35.0%
CCTAAAAGATTTCCTCTTAG+AGG + tig0022164:48013-48032 None:intergenic 35.0%
!! CCTCTAAGAGGAAATCTTTT+AGG - tig0022164:48010-48029 Msa1397540:CDS 35.0%
! GTATTCCTTCTGCTTTGTTA+TGG - tig0022164:48173-48192 Msa1397540:CDS 35.0%
TGAATCCATAACAAAGCAGA+AGG + tig0022164:48181-48200 None:intergenic 35.0%
!! ATCATGCTCTAGTTCTTCAT+AGG + tig0022164:48425-48444 None:intergenic 35.0%
TTGTGAAACAATGGACCAAT+GGG + tig0022164:48487-48506 None:intergenic 35.0%
ATTGTGAAACAATGGACCAA+TGG + tig0022164:48488-48507 None:intergenic 35.0%
AGAGAGGAAAAGTTGTGAAA+TGG - tig0022164:48779-48798 Msa1397540:CDS 35.0%
TTGTGGTTGGAATTCATCAA+TGG - tig0022164:48855-48874 Msa1397540:CDS 35.0%
!! ATCAATGGAAGCACTTACTT+TGG - tig0022164:48870-48889 Msa1397540:CDS 35.0%
!! TCAATGGAAGCACTTACTTT+GGG - tig0022164:48871-48890 Msa1397540:CDS 35.0%
AATGTTGACATTTCCAGCAT+GGG - tig0022164:48900-48919 Msa1397540:CDS 35.0%
!!! TTGGTAGATGTTTTTGGTGT+AGG - tig0022164:48949-48968 Msa1397540:CDS 35.0%
!!! TGGTAGATGTTTTTGGTGTA+GGG - tig0022164:48950-48969 Msa1397540:CDS 35.0%
!! TTTTGGTGTAGGGATTAGAT+TGG - tig0022164:48960-48979 Msa1397540:CDS 35.0%
! TTTGGTGTAGGGATTAGATT+GGG - tig0022164:48961-48980 Msa1397540:CDS 35.0%
!! TGAGGTGAAAAAGTGCTTAT+TGG - tig0022164:49020-49039 Msa1397540:CDS 35.0%
GTGCTGGATAAGAGATAAGA+AGG + tig0022164:47796-47815 None:intergenic 40.0%
CTTATCTCTTATCCAGCACA+AGG - tig0022164:47797-47816 Msa1397540:CDS 40.0%
! CACTTTGCTAGTCTAAGAAG+AGG + tig0022164:47833-47852 None:intergenic 40.0%
TTCATCACAACAGAGAAAGC+TGG - tig0022164:47881-47900 Msa1397540:CDS 40.0%
GAAGATGATCATCCTCTAAG+AGG - tig0022164:47998-48017 Msa1397540:CDS 40.0%
TCACAAACCCATGGAACAAA+AGG + tig0022164:48136-48155 None:intergenic 40.0%
TGTGATGTAGCTGATGAACA+TGG - tig0022164:48151-48170 Msa1397540:CDS 40.0%
AAGATGAGTGTCCCTAGAAA+TGG + tig0022164:48355-48374 None:intergenic 40.0%
TCAATCTTCGTAAGACCCAT+TGG - tig0022164:48469-48488 Msa1397540:CDS 40.0%
TGGCTAAACACAAAGCCAAA+AGG - tig0022164:48577-48596 Msa1397540:CDS 40.0%
CATTCACTTGTTCTTGAGGA+AGG + tig0022164:48639-48658 None:intergenic 40.0%
GTGGGTATTAAAACCACCTT+CGG - tig0022164:48699-48718 Msa1397540:CDS 40.0%
TTAGAGGAAACAAGTGAGAG+AGG - tig0022164:48763-48782 Msa1397540:CDS 40.0%
! GAGTCCACAAGAAGAAGTAT+TGG - tig0022164:48801-48820 Msa1397540:CDS 40.0%
TGAGCCAATACTTCTTCTTG+TGG + tig0022164:48808-48827 None:intergenic 40.0%
GCATGTTTCGTAACACATTG+TGG - tig0022164:48838-48857 Msa1397540:CDS 40.0%
GTTTCGTAACACATTGTGGT+TGG - tig0022164:48842-48861 Msa1397540:CDS 40.0%
CATGCTGGAAATGTCAACAT+TGG + tig0022164:48901-48920 None:intergenic 40.0%
CAATGTTGACATTTCCAGCA+TGG - tig0022164:48899-48918 Msa1397540:CDS 40.0%
ATGTTGACATTTCCAGCATG+GGG - tig0022164:48901-48920 Msa1397540:CDS 40.0%
GTAGGGATTAGATTGGGTTA+TGG - tig0022164:48967-48986 Msa1397540:CDS 40.0%
TGCTTATTGGAAGCTACAAC+AGG - tig0022164:49033-49052 Msa1397540:CDS 40.0%
GCTTATTGGAAGCTACAACA+GGG - tig0022164:49034-49053 Msa1397540:CDS 40.0%
CTTATTGGAAGCTACAACAG+GGG - tig0022164:49035-49054 Msa1397540:CDS 40.0%
TGCAATGAAGTGGAAGAAAG+CGG - tig0022164:49083-49102 Msa1397540:CDS 40.0%
TTCATCAAGATTCCGATCAG+AGG + tig0022164:49136-49155 None:intergenic 40.0%
TCGGAATATTAACAGTGCCA+CGG + tig0022164:49179-49198 None:intergenic 40.0%
GTGCTGGATAAGAGATAAGA+AGG + tig0022164:47796-47815 None:intergenic 40.0%
CTTATCTCTTATCCAGCACA+AGG - tig0022164:47797-47816 Msa1397540:CDS 40.0%
! CACTTTGCTAGTCTAAGAAG+AGG + tig0022164:47833-47852 None:intergenic 40.0%
TTCATCACAACAGAGAAAGC+TGG - tig0022164:47881-47900 Msa1397540:CDS 40.0%
GAAGATGATCATCCTCTAAG+AGG - tig0022164:47998-48017 Msa1397540:CDS 40.0%
TCACAAACCCATGGAACAAA+AGG + tig0022164:48136-48155 None:intergenic 40.0%
TGTGATGTAGCTGATGAACA+TGG - tig0022164:48151-48170 Msa1397540:CDS 40.0%
AAGATGAGTGTCCCTAGAAA+TGG + tig0022164:48355-48374 None:intergenic 40.0%
TCAATCTTCGTAAGACCCAT+TGG - tig0022164:48469-48488 Msa1397540:CDS 40.0%
TGGCTAAACACAAAGCCAAA+AGG - tig0022164:48577-48596 Msa1397540:CDS 40.0%
CATTCACTTGTTCTTGAGGA+AGG + tig0022164:48639-48658 None:intergenic 40.0%
GTGGGTATTAAAACCACCTT+CGG - tig0022164:48699-48718 Msa1397540:CDS 40.0%
TTAGAGGAAACAAGTGAGAG+AGG - tig0022164:48763-48782 Msa1397540:CDS 40.0%
! GAGTCCACAAGAAGAAGTAT+TGG - tig0022164:48801-48820 Msa1397540:CDS 40.0%
TGAGCCAATACTTCTTCTTG+TGG + tig0022164:48808-48827 None:intergenic 40.0%
GCATGTTTCGTAACACATTG+TGG - tig0022164:48838-48857 Msa1397540:CDS 40.0%
GTTTCGTAACACATTGTGGT+TGG - tig0022164:48842-48861 Msa1397540:CDS 40.0%
CATGCTGGAAATGTCAACAT+TGG + tig0022164:48901-48920 None:intergenic 40.0%
CAATGTTGACATTTCCAGCA+TGG - tig0022164:48899-48918 Msa1397540:CDS 40.0%
ATGTTGACATTTCCAGCATG+GGG - tig0022164:48901-48920 Msa1397540:CDS 40.0%
GTAGGGATTAGATTGGGTTA+TGG - tig0022164:48967-48986 Msa1397540:CDS 40.0%
TGCTTATTGGAAGCTACAAC+AGG - tig0022164:49033-49052 Msa1397540:CDS 40.0%
GCTTATTGGAAGCTACAACA+GGG - tig0022164:49034-49053 Msa1397540:CDS 40.0%
CTTATTGGAAGCTACAACAG+GGG - tig0022164:49035-49054 Msa1397540:CDS 40.0%
TGCAATGAAGTGGAAGAAAG+CGG - tig0022164:49083-49102 Msa1397540:CDS 40.0%
TTCATCAAGATTCCGATCAG+AGG + tig0022164:49136-49155 None:intergenic 40.0%
TCGGAATATTAACAGTGCCA+CGG + tig0022164:49179-49198 None:intergenic 40.0%
! AGCAAAGTGTCTTGCTGCAA+AGG - tig0022164:47844-47863 Msa1397540:CDS 45.0%
! GCAAAGTGTCTTGCTGCAAA+GGG - tig0022164:47845-47864 Msa1397540:CDS 45.0%
TCACTCACTCCAATTGGTGA+TGG - tig0022164:47941-47960 Msa1397540:CDS 45.0%
GTGAGAGAACCATCACCAAT+TGG + tig0022164:47953-47972 None:intergenic 45.0%
TCAGCTACATCACAAACCCA+TGG + tig0022164:48145-48164 None:intergenic 45.0%
GTAAGCAGCAAAAACAGCAG+TGG + tig0022164:48206-48225 None:intergenic 45.0%
AAGGGAAACGTACCAGTTTG+TGG + tig0022164:48240-48259 None:intergenic 45.0%
CACAAAGCCAAAAGGTTCTG+TGG - tig0022164:48585-48604 Msa1397540:CDS 45.0%
GGTATTAAAACCACCTTCGG+AGG - tig0022164:48702-48721 Msa1397540:CDS 45.0%
AAACCACCTTCGGAGGAATT+AGG - tig0022164:48709-48728 Msa1397540:CDS 45.0%
AACCACCTTCGGAGGAATTA+GGG - tig0022164:48710-48729 Msa1397540:CDS 45.0%
TTTAGCCCTAATTCCTCCGA+AGG + tig0022164:48718-48737 None:intergenic 45.0%
! TTTGCCAGATGGGTTCTTAG+AGG - tig0022164:48747-48766 Msa1397540:CDS 45.0%
! GTTTCCTCTAAGAACCCATC+TGG + tig0022164:48754-48773 None:intergenic 45.0%
!! AGTATTGGCTCATCCATCAG+TGG - tig0022164:48816-48835 Msa1397540:CDS 45.0%
GTTACGAAACATGCCACTGA+TGG + tig0022164:48832-48851 None:intergenic 45.0%
TACAACAGGGGAAAAAGCAG+AGG - tig0022164:49047-49066 Msa1397540:CDS 45.0%
ATGGAAGACATTCAGAACCG+TGG - tig0022164:49159-49178 Msa1397540:CDS 45.0%
! AGCAAAGTGTCTTGCTGCAA+AGG - tig0022164:47844-47863 Msa1397540:CDS 45.0%
! GCAAAGTGTCTTGCTGCAAA+GGG - tig0022164:47845-47864 Msa1397540:CDS 45.0%
TCACTCACTCCAATTGGTGA+TGG - tig0022164:47941-47960 Msa1397540:CDS 45.0%
GTGAGAGAACCATCACCAAT+TGG + tig0022164:47953-47972 None:intergenic 45.0%
TCAGCTACATCACAAACCCA+TGG + tig0022164:48145-48164 None:intergenic 45.0%
GTAAGCAGCAAAAACAGCAG+TGG + tig0022164:48206-48225 None:intergenic 45.0%
AAGGGAAACGTACCAGTTTG+TGG + tig0022164:48240-48259 None:intergenic 45.0%
CACAAAGCCAAAAGGTTCTG+TGG - tig0022164:48585-48604 Msa1397540:CDS 45.0%
GGTATTAAAACCACCTTCGG+AGG - tig0022164:48702-48721 Msa1397540:CDS 45.0%
AAACCACCTTCGGAGGAATT+AGG - tig0022164:48709-48728 Msa1397540:CDS 45.0%
AACCACCTTCGGAGGAATTA+GGG - tig0022164:48710-48729 Msa1397540:CDS 45.0%
TTTAGCCCTAATTCCTCCGA+AGG + tig0022164:48718-48737 None:intergenic 45.0%
! TTTGCCAGATGGGTTCTTAG+AGG - tig0022164:48747-48766 Msa1397540:CDS 45.0%
! GTTTCCTCTAAGAACCCATC+TGG + tig0022164:48754-48773 None:intergenic 45.0%
!! AGTATTGGCTCATCCATCAG+TGG - tig0022164:48816-48835 Msa1397540:CDS 45.0%
GTTACGAAACATGCCACTGA+TGG + tig0022164:48832-48851 None:intergenic 45.0%
TACAACAGGGGAAAAAGCAG+AGG - tig0022164:49047-49066 Msa1397540:CDS 45.0%
ATGGAAGACATTCAGAACCG+TGG - tig0022164:49159-49178 Msa1397540:CDS 45.0%
GGGTTTATGTGTCCTTGTGC+TGG + tig0022164:47812-47831 None:intergenic 50.0%
GGGTTTATGTGTCCTTGTGC+TGG + tig0022164:47812-47831 None:intergenic 50.0%
AGCCCTAATTCCTCCGAAGG+TGG + tig0022164:48715-48734 None:intergenic 55.0%
GTGACTTGATCACCCCATGC+TGG + tig0022164:48916-48935 None:intergenic 55.0%
GAAGTGGAAGAAAGCGGCAG+AGG - tig0022164:49089-49108 Msa1397540:CDS 55.0%
GAAGAAAGCGGCAGAGGATG+CGG - tig0022164:49095-49114 Msa1397540:CDS 55.0%
CCGATCAGAGGATCCACCTA+CGG + tig0022164:49124-49143 None:intergenic 55.0%
CCGTAGGTGGATCCTCTGAT+CGG - tig0022164:49121-49140 Msa1397540:CDS 55.0%
AGCCCTAATTCCTCCGAAGG+TGG + tig0022164:48715-48734 None:intergenic 55.0%
GTGACTTGATCACCCCATGC+TGG + tig0022164:48916-48935 None:intergenic 55.0%
GAAGTGGAAGAAAGCGGCAG+AGG - tig0022164:49089-49108 Msa1397540:CDS 55.0%
GAAGAAAGCGGCAGAGGATG+CGG - tig0022164:49095-49114 Msa1397540:CDS 55.0%
CCGATCAGAGGATCCACCTA+CGG + tig0022164:49124-49143 None:intergenic 55.0%
CCGTAGGTGGATCCTCTGAT+CGG - tig0022164:49121-49140 Msa1397540:CDS 55.0%
GCAGAGGATGCGGTTGCCGT+AGG - tig0022164:49105-49124 Msa1397540:CDS 65.0%
GAGGATGCGGTTGCCGTAGG+TGG - tig0022164:49108-49127 Msa1397540:CDS 65.0%
GCAGAGGATGCGGTTGCCGT+AGG - tig0022164:49105-49124 Msa1397540:CDS 65.0%
GAGGATGCGGTTGCCGTAGG+TGG - tig0022164:49108-49127 Msa1397540:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0022164 gene 47767 49206 47767 ID=Msa1397540;Name=Msa1397540
tig0022164 mRNA 47767 49206 47767 ID=Msa1397540-mRNA-1;Parent=Msa1397540;Name=Msa1397540-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|479
tig0022164 exon 47767 49206 47767 ID=Msa1397540-mRNA-1:exon:16149;Parent=Msa1397540-mRNA-1
tig0022164 CDS 47767 49206 47767 ID=Msa1397540-mRNA-1:cds;Parent=Msa1397540-mRNA-1
Gene Sequence

>Msa1397540

ATGGGATCCGAAGCAAACACTCATATCCTTCTTATCTCTTATCCAGCACAAGGACACATAAACCCTCTTCTTAGACTAGCAAAGTGTCTTGCTGCAAAGGGTGCTTCTGTCATCTTCATCACAACAGAGAAAGCTGGCAAAGACATAAGAACTGTTAACAACATCATTGAAAAATCACTCACTCCAATTGGTGATGGTTCTCTCACTTTTGAGTTCTTAGATGATGGTTTAGAAGATGATCATCCTCTAAGAGGAAATCTTTTAGGTTACATAGAACATCTCAAACTTGTTGGAAAACCATTTGTTTCTCAAATGATCAAGAATCATGCTGATTCAAACAAACCCTTTTCATGTATCATAAACAATCCTTTTGTTCCATGGGTTTGTGATGTAGCTGATGAACATGGTATTCCTTCTGCTTTGTTATGGATTCAATCCACTGCTGTTTTTGCTGCTTACTATAACTATTTCCACAAACTGGTACGTTTCCCTTCAGAAACAGAACCTTATATTGATGTTCAATTACCTTTTCAAGTTCTTAAATACAATGAAATCCCAGATTTTCTTCATCCTTTTAGTCAATTTCCATTTCTAGGGACACTCATCTTAGAACAGTTTAAGAATTTGTCTAAAGTATTTTGTGTTTTAGTAGAAACCTATGAAGAACTAGAGCATGATTTCATTGACTATATTTCAAACAAATCAATCTTCGTAAGACCCATTGGTCCATTGTTTCACAATCCAAATATTAAAGGTGCAAAAAATATTCGTGGAGATTTTGTTAAGAGTGATGATTGTAAAATTATAGAGTGGCTAAACACAAAGCCAAAAGGTTCTGTGGTTTATATTTCTTTTGGTACTGTTGTGTACCTTCCTCAAGAACAAGTGAATGAAATAGCATATGGGTTATTGGATTCTCAAGTATCGTTTTTGTGGGTATTAAAACCACCTTCGGAGGAATTAGGGCTAAAAGAACATAATTTGCCAGATGGGTTCTTAGAGGAAACAAGTGAGAGAGGAAAAGTTGTGAAATGGAGTCCACAAGAAGAAGTATTGGCTCATCCATCAGTGGCATGTTTCGTAACACATTGTGGTTGGAATTCATCAATGGAAGCACTTACTTTGGGAGTTCCAATGTTGACATTTCCAGCATGGGGTGATCAAGTCACAAATGCAAAATTCTTGGTAGATGTTTTTGGTGTAGGGATTAGATTGGGTTATGGTATGATTGAAAATAAATTAGTAACAAGAGATGAGGTGAAAAAGTGCTTATTGGAAGCTACAACAGGGGAAAAAGCAGAGGAGTTGAAGAAAAATGCAATGAAGTGGAAGAAAGCGGCAGAGGATGCGGTTGCCGTAGGTGGATCCTCTGATCGGAATCTTGATGAATTTATGGAAGACATTCAGAACCGTGGCACTGTTAATATTCCGAAGATGTAA
Protein sequence

>Msa1397540

MGSEANTHILLISYPAQGHINPLLRLAKCLAAKGASVIFITTEKAGKDIRTVNNIIEKSLTPIGDGSLTFEFLDDGLEDDHPLRGNLLGYIEHLKLVGKPFVSQMIKNHADSNKPFSCIINNPFVPWVCDVADEHGIPSALLWIQSTAVFAAYYNYFHKLVRFPSETEPYIDVQLPFQVLKYNEIPDFLHPFSQFPFLGTLILEQFKNLSKVFCVLVETYEELEHDFIDYISNKSIFVRPIGPLFHNPNIKGAKNIRGDFVKSDDCKIIEWLNTKPKGSVVYISFGTVVYLPQEQVNEIAYGLLDSQVSFLWVLKPPSEELGLKEHNLPDGFLEETSERGKVVKWSPQEEVLAHPSVACFVTHCGWNSSMEALTLGVPMLTFPAWGDQVTNAKFLVDVFGVGIRLGYGMIENKLVTRDEVKKCLLEATTGEKAEELKKNAMKWKKAAEDAVAVGGSSDRNLDEFMEDIQNRGTVNIPKM*