AlfalfaGEDB | Msa0748910

M. sativa cultivar zhongmu-4 / Msa0748910

KEGG: K04368
GO: GO:0000003 GO:0000165 GO:0000187 GO:0000280 GO:0000910 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004708 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007049 GO:0007112 GO:0007140 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0007346 GO:0008150 GO:0008152 GO:0009524 GO:0009653 GO:0009791 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010200 GO:0010243 GO:0010311 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022622 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0033206 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045859 GO:0045860 GO:0045937 GO:0048232 GO:0048285 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048583 GO:0048584 GO:0048609 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051301 GO:0051321 GO:0051338 GO:0051347 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0061640 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140013 GO:0140096 GO:1901564 GO:1901698 GO:1901700 GO:1902531 GO:1902533 GO:1903046 GO:1905392 GO:1905393
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0748910	XP_003620788.2	97.175	354	2	1	1	346	1	354	0.0	706

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0748910	sp\|Q9FJV0\|M2K6_ARATH	81.972	355	55	2	1	346	2	356	0.0	601

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0748910	G7KI11	97.175	354	2	1	1	346	1	354	0.0	706

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0027280	Msa0748910	0.820206	7.752940e-53	-8.615850e-47
Msa0032460	Msa0748910	0.820381	7.069124e-53	-8.615850e-47
Msa0081980	Msa0748910	0.811947	5.426531e-51	-8.615850e-47
Msa0123070	Msa0748910	0.810312	1.227065e-50	-8.615850e-47
Msa0174290	Msa0748910	0.801008	1.102366e-48	-8.615850e-47
Msa0422050	Msa0748910	0.818440	1.957638e-52	-8.615850e-47
Msa0506950	Msa0748910	0.818478	1.919286e-52	-8.615850e-47
Msa0529030	Msa0748910	0.814636	1.392850e-51	-8.615850e-47
Msa0530780	Msa0748910	0.813559	2.407337e-51	-8.615850e-47
Msa0580200	Msa0748910	0.800775	1.230100e-48	-8.615850e-47

Showing 1 to 10 of 24 entries

Previous1 2 3Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0748910	MtrunA17_Chr6g0487231	97.175	354	2	1	1	346	1	354	0.0	706
Msa0748910	MtrunA17_Chr4g0070851	58.559	333	127	3	10	331	10	342	1.51e-137	395
Msa0748910	MtrunA17_Chr2g0299991	53.043	345	147	5	1	331	1	344	3.26e-136	391
Msa0748910	MtrunA17_Chr6g0449691	40.656	305	163	5	38	331	53	350	8.23e-69	224
Msa0748910	MtrunA17_Chr6g0479211	39.493	276	147	8	63	323	50	320	3.43e-57	188
Msa0748910	MtrunA17_Chr4g0000481	42.435	271	133	7	66	323	81	341	7.47e-57	189
Msa0748910	MtrunA17_Chr2g0317001	35.632	261	150	5	71	322	17	268	5.85e-38	144
Msa0748910	MtrunA17_Chr5g0419441	33.208	265	161	4	70	325	240	497	3.28e-37	142
Msa0748910	MtrunA17_Chr3g0140631	31.618	272	157	7	64	321	32	288	2.33e-33	125
Msa0748910	MtrunA17_Chr4g0038501	33.571	280	161	8	55	323	11	276	2.36e-32	128

Showing 1 to 10 of 308 entries

Previous1 2 3 4 5…31Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0748910	AT5G56580.1	81.972	355	55	2	1	346	2	356	0.0	601
Msa0748910	AT4G29810.1	54.839	341	145	2	1	332	1	341	4.87e-137	394
Msa0748910	AT4G29810.2	53.429	350	145	3	1	332	1	350	1.23e-133	385
Msa0748910	AT4G26070.2	52.632	342	151	2	12	342	11	352	1.62e-131	380
Msa0748910	AT4G26070.3	52.632	342	151	2	12	342	11	352	1.62e-131	380
Msa0748910	AT4G26070.5	53.354	328	142	2	26	342	12	339	3.65e-128	370
Msa0748910	AT4G29810.3	54.491	334	134	3	1	316	1	334	5.39e-128	370
Msa0748910	AT4G26070.4	52.553	333	147	2	21	342	19	351	5.55e-128	370
Msa0748910	AT4G26070.1	53.716	296	129	1	12	299	11	306	2.11e-115	337
Msa0748910	AT5G40440.5	42.105	285	147	5	69	342	1	278	1.81e-69	224

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 91 sgRNAs with CRISPR-Local

Find 451 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTAATACGGGGAGATA+AGG	0.520076	5_2:-2283543	None:intergenic
AAAGTAATTGGAAAAGGCAG+CGG	0.615493	5_2:+2281273	Msa0748910:CDS
AAATGAGACGCATCCCTTTC+TGG	0.189641	5_2:-2279773	None:intergenic
AAATTACAGGAATGAAGTGA+TGG	0.555694	5_2:-2276951	None:intergenic
AACAAAACTCCGGCGAGAAC+TGG	0.426599	5_2:-2282669	None:intergenic
AACTCCGGCGAGAACTGGTC+AGG	0.494006	5_2:-2282664	None:intergenic
AACTGGTCAGGAGGAGCAGA+AGG	0.514627	5_2:-2282652	None:intergenic
AAGATTCAATGTTGATTTCA+AGG	0.356273	5_2:-2276818	None:intergenic
AATATAAGGAAACCGTCCTA+TGG	0.551899	5_2:-2282560	None:intergenic
AATCTCTTAGTAAACCACAA+AGG	0.595312	5_2:+2282037	Msa0748910:CDS

Showing 1 to 10 of 91 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GATGAAAAAGAAGAAAGAGA+AGG	-	chr5_2:2276765-2276784	None:intergenic	30.0%
GTGAGAAAGAAATGGAAAAA+GGG	-	chr5_2:2276787-2276806	None:intergenic	30.0%
AGTGAGAAAGAAATGGAAAA+AGG	-	chr5_2:2276788-2276807	None:intergenic	30.0%
TTCATACAGTGAGAAAGAAA+TGG	-	chr5_2:2276795-2276814	None:intergenic	30.0%
AATTACAGGAATGAAGTGAT+GGG	-	chr5_2:2276953-2276972	None:intergenic	30.0%
AAATTACAGGAATGAAGTGA+TGG	-	chr5_2:2276954-2276973	None:intergenic	30.0%
ATGAAAGTCGAAGAAATTAC+AGG	-	chr5_2:2276967-2276986	None:intergenic	30.0%
AGCAAAAAATCAAAATGGGT+CGG	-	chr5_2:2277000-2277019	None:intergenic	30.0%
TCTGTTAATTGATCCCTTAA+AGG	+	chr5_2:2277078-2277097	Msa0748910:intron	30.0%
ATGTCTTCAATCAAAAATGC+CGG	-	chr5_2:2277202-2277221	None:intergenic	30.0%

Showing 1 to 10 of 451 entries

Previous1 2 3 4 5…46Next

Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	2276743	2283573	2276743	ID=Msa0748910;Name=Msa0748910
chr5_2	mRNA	2276743	2283573	2276743	ID=Msa0748910-mRNA-1;Parent=Msa0748910;Name=Msa0748910-mRNA-1;_AED=0.04;_eAED=0.04;_QI=150\|0.85\|0.87\|1\|0.71\|1\|8\|213\|346
chr5_2	exon	2276743	2276966	2276743	ID=Msa0748910-mRNA-1:exon:622;Parent=Msa0748910-mRNA-1
chr5_2	exon	2279731	2279815	2279731	ID=Msa0748910-mRNA-1:exon:623;Parent=Msa0748910-mRNA-1
chr5_2	exon	2281216	2281350	2281216	ID=Msa0748910-mRNA-1:exon:624;Parent=Msa0748910-mRNA-1
chr5_2	exon	2281643	2281867	2281643	ID=Msa0748910-mRNA-1:exon:625;Parent=Msa0748910-mRNA-1
chr5_2	exon	2281971	2282129	2281971	ID=Msa0748910-mRNA-1:exon:626;Parent=Msa0748910-mRNA-1
chr5_2	exon	2282484	2282707	2282484	ID=Msa0748910-mRNA-1:exon:627;Parent=Msa0748910-mRNA-1
chr5_2	exon	2283122	2283167	2283122	ID=Msa0748910-mRNA-1:exon:628;Parent=Msa0748910-mRNA-1
chr5_2	exon	2283268	2283573	2283268	ID=Msa0748910-mRNA-1:exon:629;Parent=Msa0748910-mRNA-1
chr5_2	five_prime_UTR	2276743	2276892	2276743	ID=Msa0748910-mRNA-1:five_prime_utr;Parent=Msa0748910-mRNA-1
chr5_2	CDS	2276893	2276966	2276893	ID=Msa0748910-mRNA-1:cds;Parent=Msa0748910-mRNA-1
chr5_2	CDS	2279731	2279815	2279731	ID=Msa0748910-mRNA-1:cds;Parent=Msa0748910-mRNA-1
chr5_2	CDS	2281216	2281350	2281216	ID=Msa0748910-mRNA-1:cds;Parent=Msa0748910-mRNA-1
chr5_2	CDS	2281643	2281867	2281643	ID=Msa0748910-mRNA-1:cds;Parent=Msa0748910-mRNA-1
chr5_2	CDS	2281971	2282129	2281971	ID=Msa0748910-mRNA-1:cds;Parent=Msa0748910-mRNA-1
chr5_2	CDS	2282484	2282707	2282484	ID=Msa0748910-mRNA-1:cds;Parent=Msa0748910-mRNA-1
chr5_2	CDS	2283122	2283167	2283122	ID=Msa0748910-mRNA-1:cds;Parent=Msa0748910-mRNA-1
chr5_2	CDS	2283268	2283360	2283268	ID=Msa0748910-mRNA-1:cds;Parent=Msa0748910-mRNA-1
chr5_2	three_prime_UTR	2283361	2283573	2283361	ID=Msa0748910-mRNA-1:three_prime_utr;Parent=Msa0748910-mRNA-1

Gene Sequence

>Msa0748910

ATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCAGTTCCAGCTCAAGAAACACCCATCACTTCATTCCTGACTGCAAGTGGTACATTTCATGATGGAGATCTGCTGTTGAACCAGAAAGGGATGCGTCTCATTTCTGAAGAAAAGGAATCAAGGCCTTCGGATGCTAAGGATCTCGACTTTGACTTCACGTTGGACGACCTTGAGACTGTCAAAGTAATTGGAAAAGGCAGCGGTGGTGTAGTGCAACTCGTTCGCCATAAGTGGGTTGGAAAATTGTTTGCTTTAAAGGCCATTCCAATGAATATACAAGAGGATATTCGGAAACAGATTGTTCAGGAACTGAAAATAAACCAAGCATCACAGTGTCCACATGTTGTAGTTTGCTATCACTCATTCTATAACAATGGAGTTATATCTCTTGTATTAGAATACATGGACCGTGGTTCTCTCGTAGATATAATCAGACAAGTTAATACAATTCTGGAACCATATCTTGCTGTGGTTTGTAAACAGGTTTTACAGGGCCTTGTTTATTTGCACAATGAAAGACATGTCATACATAGGGACATCAAACCATCCAATCTCTTAGTAAACCACAAAGGGGAGGTGAAGATTACTGATTTTGGTGTTAGTGCTATGCTGGCAAGCACAATGGGCCAAAGAGATACATTTCCAGAAAGAATCAGTGGGAGTACTTATGATTATAGCTGTGACATCTGGAGTTTGGGGATGGTAGTACTTGAGTGTGCCATAGGACGGTTTCCTTATATTCAGTCTGAAGATCAGCAAGCCTGGCCTAGTTTCTATGAGCTGTTGCAAGCAATTGTTGAAAGTCCACCACCTTCTGCTCCTCCTGACCAGTTCTCGCCGGAGTTTTGTTCATTTGTGTCATCCTGCATAAAAAAGGATCCTCGCGAAAGATCAACGTCACTGGAGCTTTTGGATCATCCATTCATAAAAAAGTTTGAAGATAAAGATCTAGATCTTGGAATTTTAGTAGGTGGCTTGGAACCTCCTGTAAATTTTCCTAGATAA

Protein sequence

>Msa0748910

MKTKTPLKQLKLSVPAQETPITSFLTASGTFHDGDLLLNQKGMRLISEEKESRPSDAKDLDFDFTLDDLETVKVIGKGSGGVVQLVRHKWVGKLFALKAIPMNIQEDIRKQIVQELKINQASQCPHVVVCYHSFYNNGVISLVLEYMDRGSLVDIIRQVNTILEPYLAVVCKQVLQGLVYLHNERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASTMGQRDTFPERISGSTYDYSCDIWSLGMVVLECAIGRFPYIQSEDQQAWPSFYELLQAIVESPPPSAPPDQFSPEFCSFVSSCIKKDPRERSTSLELLDHPFIKKFEDKDLDLGILVGGLEPPVNFPR*