Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1064370 | XP_003623411.2 | 98.009 | 452 | 9 | 0 | 1 | 452 | 1 | 452 | 0.0 | 917 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1064370 | sp|Q9SCU1|PATL6_ARATH | 72.932 | 399 | 103 | 2 | 38 | 436 | 11 | 404 | 0.0 | 610 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1064370 | G7KU47 | 97.936 | 436 | 9 | 0 | 17 | 452 | 1 | 436 | 0.0 | 883 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017670 | Msa1064370 | 0.803080 | 4.135350e-49 | -8.615850e-47 |
| Msa0025160 | Msa1064370 | 0.816046 | 6.767906e-52 | -8.615850e-47 |
| Msa0027280 | Msa1064370 | 0.811147 | 8.095060e-51 | -8.615850e-47 |
| Msa0032460 | Msa1064370 | 0.814087 | 1.842000e-51 | -8.615850e-47 |
| Msa0035060 | Msa1064370 | 0.800602 | 1.334214e-48 | -8.615850e-47 |
| Msa0035270 | Msa1064370 | 0.812393 | 4.335849e-51 | -8.615850e-47 |
| Msa0035340 | Msa1064370 | 0.847639 | 1.018091e-59 | -8.615850e-47 |
| Msa0035380 | Msa1064370 | 0.821807 | 3.318111e-53 | -8.615850e-47 |
| Msa0042640 | Msa1064370 | 0.819939 | 8.925039e-53 | -8.615850e-47 |
| Msa0054690 | Msa1064370 | 0.820073 | 8.313999e-53 | -8.615850e-47 |
| Msa0077340 | Msa1064370 | 0.808660 | 2.777104e-50 | -8.615850e-47 |
| Msa0081390 | Msa1064370 | 0.808456 | 3.069753e-50 | -8.615850e-47 |
| Msa0081450 | Msa1064370 | 0.810823 | 9.518906e-51 | -8.615850e-47 |
| Msa0081980 | Msa1064370 | 0.800667 | 1.294415e-48 | -8.615850e-47 |
| Msa0098040 | Msa1064370 | 0.823233 | 1.546393e-53 | -8.615850e-47 |
| Msa0611210 | Msa1064370 | 0.836896 | 7.152625e-57 | -8.615850e-47 |
| Msa0646510 | Msa1064370 | 0.813515 | 2.462277e-51 | -8.615850e-47 |
| Msa0651550 | Msa1064370 | 0.848359 | 6.443738e-60 | -8.615850e-47 |
| Msa0658640 | Msa1064370 | 0.807165 | 5.775068e-50 | -8.615850e-47 |
| Msa0661150 | Msa1064370 | 0.819858 | 9.314124e-53 | -8.615850e-47 |
| Msa0666700 | Msa1064370 | 0.805530 | 1.277168e-49 | -8.615850e-47 |
| Msa0700460 | Msa1064370 | 0.820480 | 6.709388e-53 | -8.615850e-47 |
| Msa0716480 | Msa1064370 | 0.805446 | 1.329836e-49 | -8.615850e-47 |
| Msa0735780 | Msa1064370 | 0.833027 | 6.751242e-56 | -8.615850e-47 |
| Msa0740710 | Msa1064370 | 0.828071 | 1.102145e-54 | -8.615850e-47 |
| Msa0747000 | Msa1064370 | 0.806299 | 8.799155e-50 | -8.615850e-47 |
| Msa0748910 | Msa1064370 | 0.806071 | 9.827723e-50 | -8.615850e-47 |
| Msa0756490 | Msa1064370 | 0.817116 | 3.895604e-52 | -8.615850e-47 |
| Msa0780910 | Msa1064370 | 0.810394 | 1.177934e-50 | -8.615850e-47 |
| Msa0792370 | Msa1064370 | 0.827064 | 1.922976e-54 | -8.615850e-47 |
| Msa0795870 | Msa1064370 | 0.814712 | 1.339634e-51 | -8.615850e-47 |
| Msa0819170 | Msa1064370 | 0.800513 | 1.391555e-48 | -8.615850e-47 |
| Msa0821160 | Msa1064370 | 0.806909 | 6.543421e-50 | -8.615850e-47 |
| Msa0829300 | Msa1064370 | 0.829709 | 4.423174e-55 | -8.615850e-47 |
| Msa0829330 | Msa1064370 | 0.824704 | 6.986480e-54 | -8.615850e-47 |
| Msa0833650 | Msa1064370 | 0.828007 | 1.141654e-54 | -8.615850e-47 |
| Msa0835490 | Msa1064370 | 0.802856 | 4.599696e-49 | -8.615850e-47 |
| Msa0837460 | Msa1064370 | 0.802860 | 4.590312e-49 | -8.615850e-47 |
| Msa0123070 | Msa1064370 | 0.800244 | 1.578427e-48 | -8.615850e-47 |
| Msa0125360 | Msa1064370 | 0.811945 | 5.430839e-51 | -8.615850e-47 |
| Msa0154620 | Msa1064370 | 0.816223 | 6.176161e-52 | -8.615850e-47 |
| Msa0173690 | Msa1064370 | 0.827036 | 1.952612e-54 | -8.615850e-47 |
| Msa0174290 | Msa1064370 | 0.808274 | 3.356154e-50 | -8.615850e-47 |
| Msa0176060 | Msa1064370 | 0.817147 | 3.834395e-52 | -8.615850e-47 |
| Msa0365210 | Msa1064370 | 0.802256 | 6.115649e-49 | -8.615850e-47 |
| Msa0380670 | Msa1064370 | 0.806530 | 7.865148e-50 | -8.615850e-47 |
| Msa0415600 | Msa1064370 | 0.812311 | 4.520223e-51 | -8.615850e-47 |
| Msa0422050 | Msa1064370 | 0.834530 | 2.841208e-56 | -8.615850e-47 |
| Msa0430300 | Msa1064370 | 0.818121 | 2.312617e-52 | -8.615850e-47 |
| Msa0431200 | Msa1064370 | 0.808750 | 2.655935e-50 | -8.615850e-47 |
| Msa1021590 | Msa1064370 | 0.814287 | 1.663579e-51 | -8.615850e-47 |
| Msa1025560 | Msa1064370 | 0.950323 | 2.086871e-108 | -8.615850e-47 |
| Msa1034600 | Msa1064370 | 0.833442 | 5.320246e-56 | -8.615850e-47 |
| Msa1042160 | Msa1064370 | 0.807723 | 4.397744e-50 | -8.615850e-47 |
| Msa1042190 | Msa1064370 | 0.809878 | 1.522133e-50 | -8.615850e-47 |
| Msa1044680 | Msa1064370 | 0.844821 | 5.963424e-59 | -8.615850e-47 |
| Msa1064370 | Msa1072940 | 0.808042 | 3.760756e-50 | -8.615850e-47 |
| Msa1064370 | Msa1074370 | 0.829115 | 6.164971e-55 | -8.615850e-47 |
| Msa1064370 | Msa1081390 | 0.800909 | 1.155142e-48 | -8.615850e-47 |
| Msa1064370 | Msa1081690 | 0.810705 | 1.009265e-50 | -8.615850e-47 |
| Msa1064370 | Msa1090140 | 0.814541 | 1.461956e-51 | -8.615850e-47 |
| Msa1064370 | Msa1105640 | 0.844654 | 6.612754e-59 | -8.615850e-47 |
| Msa1064370 | Msa1109390 | 0.871634 | 5.887166e-67 | -8.615850e-47 |
| Msa1064370 | Msa1116220 | 0.804228 | 2.389445e-49 | -8.615850e-47 |
| Msa1064370 | Msa1132840 | 0.830565 | 2.734411e-55 | -8.615850e-47 |
| Msa1064370 | Msa1148960 | 0.802897 | 4.512015e-49 | -8.615850e-47 |
| Msa1064370 | Msa1167470 | 0.804963 | 1.678572e-49 | -8.615850e-47 |
| Msa1064370 | Msa1186020 | 0.806830 | 6.797883e-50 | -8.615850e-47 |
| Msa1064370 | Msa1216110 | 0.824161 | 9.379024e-54 | -8.615850e-47 |
| Msa1064370 | Msa1226520 | 0.810691 | 1.016266e-50 | -8.615850e-47 |
| Msa1064370 | Msa1282260 | 0.847557 | 1.072697e-59 | -8.615850e-47 |
| Msa1064370 | Msa1284420 | 0.801724 | 7.865107e-49 | -8.615850e-47 |
| Msa1064370 | Msa1297230 | 0.801788 | 7.630555e-49 | -8.615850e-47 |
| Msa1064370 | Msa1308820 | 0.802199 | 6.282401e-49 | -8.615850e-47 |
| Msa1064370 | Msa1321340 | 0.835055 | 2.096832e-56 | -8.615850e-47 |
| Msa1064370 | Msa1343180 | 0.817462 | 3.257449e-52 | -8.615850e-47 |
| Msa1064370 | Msa1347310 | 0.841516 | 4.532147e-58 | -8.615850e-47 |
| Msa1064370 | Msa1349690 | 0.822623 | 2.145231e-53 | -8.615850e-47 |
| Msa1064370 | Msa1358290 | 0.838597 | 2.615637e-57 | -8.615850e-47 |
| Msa1064370 | Msa1359690 | 0.806385 | 8.440779e-50 | -8.615850e-47 |
| Msa1064370 | Msa1372040 | 0.826333 | 2.873977e-54 | -8.615850e-47 |
| Msa1064370 | Msa1383310 | 0.805199 | 1.497699e-49 | -8.615850e-47 |
| Msa1064370 | Msa1392740 | 0.820460 | 6.781357e-53 | -8.615850e-47 |
| Msa1064370 | Msa1405460 | 0.826965 | 2.030328e-54 | -8.615850e-47 |
| Msa1064370 | Msa1409410 | 0.804811 | 1.805849e-49 | -8.615850e-47 |
| Msa1064370 | Msa1417380 | 0.809921 | 1.489852e-50 | -8.615850e-47 |
| Msa0270340 | Msa1064370 | 0.824963 | 6.069138e-54 | -8.615850e-47 |
| Msa0298470 | Msa1064370 | 0.806163 | 9.398224e-50 | -8.615850e-47 |
| Msa0307670 | Msa1064370 | 0.822751 | 2.003712e-53 | -8.615850e-47 |
| Msa0321620 | Msa1064370 | 0.805976 | 1.029279e-49 | -8.615850e-47 |
| Msa0513970 | Msa1064370 | 0.814418 | 1.556362e-51 | -8.615850e-47 |
| Msa0517250 | Msa1064370 | 0.817043 | 4.045211e-52 | -8.615850e-47 |
| Msa0520260 | Msa1064370 | 0.817100 | 3.928548e-52 | -8.615850e-47 |
| Msa0529030 | Msa1064370 | 0.829940 | 3.885376e-55 | -8.615850e-47 |
| Msa0530780 | Msa1064370 | 0.854173 | 1.468298e-61 | -8.615850e-47 |
| Msa0549370 | Msa1064370 | 0.832196 | 1.085086e-55 | -8.615850e-47 |
| Msa0574050 | Msa1064370 | 0.808950 | 2.407285e-50 | -8.615850e-47 |
| Msa0580370 | Msa1064370 | 0.829418 | 5.206761e-55 | -8.615850e-47 |
| Msa0585340 | Msa1064370 | 0.810745 | 9.891664e-51 | -8.615850e-47 |
| Msa0587620 | Msa1064370 | 0.807031 | 6.163983e-50 | -8.615850e-47 |
| Msa0881360 | Msa1064370 | 0.806900 | 6.571107e-50 | -8.615850e-47 |
| Msa0894790 | Msa1064370 | 0.821734 | 3.449579e-53 | -8.615850e-47 |
| Msa0921590 | Msa1064370 | 0.842784 | 2.092422e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1064370 | MtrunA17_Chr7g0243541 | 88.717 | 452 | 8 | 1 | 1 | 452 | 1 | 409 | 0.0 | 811 |
| Msa1064370 | MtrunA17_Chr4g0004981 | 72.870 | 446 | 111 | 5 | 1 | 436 | 1 | 446 | 0.0 | 662 |
| Msa1064370 | MtrunA17_Chr8g0385291 | 44.019 | 418 | 218 | 10 | 15 | 427 | 85 | 491 | 6.58e-116 | 349 |
| Msa1064370 | MtrunA17_Chr2g0293201 | 42.890 | 429 | 192 | 9 | 61 | 442 | 46 | 468 | 1.08e-113 | 342 |
| Msa1064370 | MtrunA17_Chr4g0014911 | 43.218 | 435 | 217 | 10 | 14 | 439 | 52 | 465 | 8.61e-112 | 337 |
| Msa1064370 | MtrunA17_Chr4g0014901 | 48.512 | 336 | 163 | 7 | 101 | 431 | 257 | 587 | 7.44e-108 | 331 |
| Msa1064370 | MtrunA17_Chr3g0131071 | 48.780 | 328 | 158 | 7 | 100 | 422 | 234 | 556 | 1.48e-106 | 327 |
| Msa1064370 | MtrunA17_Chr1g0183881 | 39.640 | 333 | 190 | 6 | 100 | 427 | 131 | 457 | 4.69e-78 | 250 |
| Msa1064370 | MtrunA17_Chr8g0385681 | 28.440 | 218 | 141 | 5 | 114 | 329 | 50 | 254 | 1.50e-18 | 85.1 |
| Msa1064370 | MtrunA17_Chr3g0131581 | 27.358 | 212 | 139 | 4 | 111 | 320 | 64 | 262 | 2.64e-18 | 84.7 |
| Msa1064370 | MtrunA17_Chr8g0385691 | 28.230 | 209 | 135 | 5 | 114 | 320 | 47 | 242 | 2.24e-17 | 81.6 |
| Msa1064370 | MtrunA17_Chr5g0404711 | 28.000 | 225 | 140 | 7 | 116 | 326 | 76 | 292 | 2.89e-17 | 84.0 |
| Msa1064370 | MtrunA17_Chr3g0144911 | 28.444 | 225 | 139 | 7 | 116 | 326 | 110 | 326 | 1.09e-16 | 82.0 |
| Msa1064370 | MtrunA17_Chr4g0035391 | 27.602 | 221 | 134 | 8 | 116 | 320 | 107 | 317 | 2.09e-15 | 78.6 |
| Msa1064370 | MtrunA17_Chr1g0155521 | 26.582 | 237 | 148 | 10 | 100 | 320 | 96 | 322 | 5.13e-15 | 77.4 |
| Msa1064370 | MtrunA17_Chr4g0035381 | 26.941 | 219 | 138 | 7 | 116 | 320 | 84 | 294 | 1.14e-14 | 75.5 |
| Msa1064370 | MtrunA17_Chr3g0141821 | 27.273 | 220 | 136 | 8 | 116 | 320 | 93 | 303 | 1.45e-14 | 75.9 |
| Msa1064370 | MtrunA17_Chr4g0035361 | 26.339 | 224 | 145 | 6 | 116 | 326 | 1 | 217 | 2.49e-14 | 74.7 |
| Msa1064370 | MtrunA17_Chr3g0144891 | 26.786 | 224 | 144 | 6 | 116 | 326 | 97 | 313 | 3.96e-14 | 74.7 |
| Msa1064370 | MtrunA17_Chr8g0372651 | 27.556 | 225 | 141 | 7 | 116 | 326 | 79 | 295 | 9.47e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1064370 | AT3G51670.1 | 72.932 | 399 | 103 | 2 | 38 | 436 | 11 | 404 | 0.0 | 610 |
| Msa1064370 | AT4G09160.2 | 47.644 | 382 | 183 | 10 | 63 | 435 | 265 | 638 | 1.22e-111 | 343 |
| Msa1064370 | AT4G09160.1 | 47.644 | 382 | 183 | 10 | 63 | 435 | 290 | 663 | 1.73e-111 | 343 |
| Msa1064370 | AT4G09160.3 | 47.644 | 382 | 183 | 10 | 63 | 435 | 265 | 638 | 1.81e-111 | 342 |
| Msa1064370 | AT1G72160.1 | 46.632 | 386 | 188 | 11 | 63 | 435 | 108 | 488 | 4.86e-111 | 336 |
| Msa1064370 | AT1G30690.1 | 45.217 | 345 | 171 | 8 | 95 | 432 | 199 | 532 | 2.56e-98 | 305 |
| Msa1064370 | AT1G30690.2 | 45.217 | 345 | 171 | 8 | 95 | 432 | 199 | 532 | 2.56e-98 | 305 |
| Msa1064370 | AT1G22530.2 | 43.582 | 335 | 171 | 9 | 100 | 427 | 318 | 641 | 5.01e-86 | 276 |
| Msa1064370 | AT1G22530.1 | 43.582 | 335 | 171 | 9 | 100 | 427 | 352 | 675 | 6.28e-86 | 277 |
| Msa1064370 | AT1G72150.1 | 35.417 | 432 | 249 | 12 | 12 | 432 | 158 | 570 | 5.37e-78 | 253 |
| Msa1064370 | AT2G21540.6 | 28.444 | 225 | 139 | 7 | 116 | 326 | 95 | 311 | 5.12e-17 | 84.0 |
| Msa1064370 | AT2G21540.2 | 28.444 | 225 | 139 | 7 | 116 | 326 | 95 | 311 | 5.12e-17 | 84.0 |
| Msa1064370 | AT2G21540.1 | 28.444 | 225 | 139 | 7 | 116 | 326 | 95 | 311 | 5.12e-17 | 84.0 |
| Msa1064370 | AT2G21540.4 | 28.444 | 225 | 139 | 7 | 116 | 326 | 95 | 311 | 5.12e-17 | 84.0 |
| Msa1064370 | AT2G21540.3 | 28.444 | 225 | 139 | 7 | 116 | 326 | 95 | 311 | 5.53e-17 | 84.0 |
| Msa1064370 | AT2G21540.5 | 28.444 | 225 | 139 | 7 | 116 | 326 | 95 | 311 | 5.53e-17 | 84.0 |
| Msa1064370 | AT4G39180.3 | 28.444 | 225 | 139 | 7 | 116 | 326 | 96 | 312 | 7.28e-17 | 83.6 |
| Msa1064370 | AT4G39180.2 | 28.444 | 225 | 139 | 7 | 116 | 326 | 96 | 312 | 7.28e-17 | 83.6 |
| Msa1064370 | AT4G39180.1 | 28.444 | 225 | 139 | 7 | 116 | 326 | 96 | 312 | 7.49e-17 | 83.6 |
| Msa1064370 | AT4G34580.2 | 27.876 | 226 | 139 | 8 | 116 | 326 | 88 | 304 | 3.78e-16 | 81.3 |
| Msa1064370 | AT4G34580.1 | 27.876 | 226 | 139 | 8 | 116 | 326 | 88 | 304 | 3.78e-16 | 81.3 |
| Msa1064370 | AT4G36490.1 | 27.556 | 225 | 141 | 7 | 116 | 326 | 78 | 294 | 6.97e-16 | 80.5 |
| Msa1064370 | AT2G18180.2 | 28.444 | 225 | 139 | 7 | 116 | 326 | 81 | 297 | 1.62e-15 | 79.3 |
| Msa1064370 | AT2G18180.1 | 28.444 | 225 | 139 | 7 | 116 | 326 | 81 | 297 | 2.41e-15 | 78.6 |
| Msa1064370 | AT4G39170.1 | 25.448 | 279 | 167 | 10 | 42 | 295 | 32 | 294 | 3.07e-15 | 78.6 |
| Msa1064370 | AT4G39170.2 | 25.448 | 279 | 167 | 10 | 42 | 295 | 32 | 294 | 3.26e-15 | 78.6 |
| Msa1064370 | AT1G19650.1 | 27.753 | 227 | 138 | 8 | 116 | 326 | 104 | 320 | 4.54e-15 | 78.2 |
| Msa1064370 | AT1G19650.3 | 27.753 | 227 | 138 | 8 | 116 | 326 | 104 | 320 | 5.20e-15 | 77.4 |
| Msa1064370 | AT2G16380.2 | 27.660 | 235 | 142 | 9 | 108 | 326 | 82 | 304 | 7.32e-15 | 77.0 |
| Msa1064370 | AT2G16380.1 | 27.660 | 235 | 142 | 9 | 108 | 326 | 82 | 304 | 7.32e-15 | 77.0 |
| Msa1064370 | AT1G01630.1 | 23.832 | 214 | 144 | 4 | 111 | 320 | 47 | 245 | 8.33e-14 | 71.6 |
| Msa1064370 | AT2G21520.2 | 25.641 | 195 | 122 | 6 | 116 | 295 | 114 | 300 | 9.33e-14 | 73.9 |
| Msa1064370 | AT2G21520.3 | 25.641 | 195 | 122 | 6 | 116 | 295 | 114 | 300 | 9.33e-14 | 73.9 |
| Msa1064370 | AT2G21520.1 | 25.641 | 195 | 122 | 6 | 116 | 295 | 110 | 296 | 1.02e-13 | 73.9 |
| Msa1064370 | AT4G08690.2 | 24.413 | 213 | 142 | 5 | 112 | 320 | 41 | 238 | 3.93e-13 | 70.5 |
| Msa1064370 | AT4G08690.1 | 24.413 | 213 | 142 | 5 | 112 | 320 | 41 | 238 | 3.93e-13 | 70.5 |
| Msa1064370 | AT4G08690.3 | 24.413 | 213 | 142 | 5 | 112 | 320 | 41 | 238 | 3.93e-13 | 70.5 |
| Msa1064370 | AT1G55840.1 | 25.581 | 215 | 130 | 8 | 117 | 315 | 39 | 239 | 2.63e-12 | 68.2 |
| Msa1064370 | AT1G55840.2 | 25.581 | 215 | 130 | 8 | 117 | 315 | 12 | 212 | 2.75e-12 | 67.8 |
| Msa1064370 | AT2G18180.5 | 28.218 | 202 | 123 | 7 | 139 | 326 | 6 | 199 | 1.72e-11 | 66.2 |
Find 87 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCTGAGTTCACTGTTAA+AGG | 0.184177 | 7_2:+56898945 | Msa1064370:CDS |
| GTGAACTCAGAAGCTGGTTT+TGG | 0.239830 | 7_2:-56898936 | None:intergenic |
| TTCCATTAATGTTGTGACTA+TGG | 0.244429 | 7_2:-56897580 | None:intergenic |
| AACCATAGTCACAACATTAA+TGG | 0.252522 | 7_2:+56897578 | Msa1064370:CDS |
| TTTGAGGTTGGAAATGAAAT+AGG | 0.258263 | 7_2:-56897640 | None:intergenic |
| ACCTTACGAGCAACCATTTC+AGG | 0.266158 | 7_2:-56898212 | None:intergenic |
| TGCTTGTGAAGTGTCTTTCT+TGG | 0.289785 | 7_2:+56897838 | Msa1064370:CDS |
| CTTTCTTGGAGGAAAGAATT+TGG | 0.299122 | 7_2:+56897852 | Msa1064370:CDS |
| GTGTAGCTAGCTTCTGCATT+TGG | 0.299367 | 7_2:-56899464 | None:intergenic |
| AAATGTTGTGGATGAAGATT+TGG | 0.311161 | 7_2:+56897881 | Msa1064370:CDS |
| TGTAGTTGGAGGCTGGGATT+TGG | 0.312615 | 7_2:+56899421 | Msa1064370:CDS |
| GATTCAAGTTACTGATCTTA+AGG | 0.332587 | 7_2:+56898124 | Msa1064370:CDS |
| ACAAGTGAATTGAGTGATTA+TGG | 0.341620 | 7_2:+56899920 | Msa1064370:three_prime_UTR |
| ATCAAAAGAAGCCGGCATTA+TGG | 0.356633 | 7_2:+56899550 | Msa1064370:CDS |
| GTGGTGTATTAGTACTTGTT+TGG | 0.360457 | 7_2:+56899768 | Msa1064370:three_prime_UTR |
| TTCCATGCAGAAATTTCATC+TGG | 0.363571 | 7_2:+56897434 | Msa1064370:exon |
| TTAGTTCTTTGAGTCAGAAA+TGG | 0.368588 | 7_2:-56898561 | None:intergenic |
| GAGAATATTCCAATTCAATA+TGG | 0.371553 | 7_2:+56898876 | Msa1064370:CDS |
| CTCAGTCCACCATATTGAAT+TGG | 0.383764 | 7_2:-56898885 | None:intergenic |
| TGTAGCTAGCTTCTGCATTT+GGG | 0.386593 | 7_2:-56899463 | None:intergenic |
| TTTCTTGGAGTTTCTAGAAA+TGG | 0.388074 | 7_2:-56897531 | None:intergenic |
| ACAACCCTTAACTCACTCTT+AGG | 0.396909 | 7_2:-56898152 | None:intergenic |
| GAGCAAGTTTGTGATCTCTA+AGG | 0.402946 | 7_2:+56898584 | Msa1064370:CDS |
| TCAAGATAACTATCCTGAAA+TGG | 0.404693 | 7_2:+56898199 | Msa1064370:CDS |
| GGGAGATTGTAGTTGGAGGC+TGG | 0.407967 | 7_2:+56899414 | Msa1064370:CDS |
| AATCCCTCATTCACCATCAA+TGG | 0.429468 | 7_2:+56897467 | Msa1064370:CDS |
| TTTCTAGAAATGGTGTGCTT+AGG | 0.436314 | 7_2:-56897521 | None:intergenic |
| TATTGAATTGGAATATTCTC+AGG | 0.440014 | 7_2:-56898873 | None:intergenic |
| GAGTGATCTTCTTCCATTGA+TGG | 0.440321 | 7_2:-56897480 | None:intergenic |
| AATGTTGTGGATGAAGATTT+GGG | 0.445253 | 7_2:+56897882 | Msa1064370:CDS |
| ATGAAATTTCTGCATGGAAA+TGG | 0.446188 | 7_2:-56897430 | None:intergenic |
| TCCTGAAATGGTTGCTCGTA+AGG | 0.456947 | 7_2:+56898211 | Msa1064370:CDS |
| GGAGATTGTAGTTGGAGGCT+GGG | 0.463853 | 7_2:+56899415 | Msa1064370:CDS |
| AAAGTGAACATACAAATAGA+AGG | 0.473146 | 7_2:+56898975 | Msa1064370:CDS |
| ATATGCCTAAGAGTGAGTTA+AGG | 0.474991 | 7_2:+56898147 | Msa1064370:CDS |
| CCTGTGTGTTATAATCATTA+TGG | 0.475087 | 7_2:+56897963 | Msa1064370:CDS |
| TCTTCCATTGATGGTGAATG+AGG | 0.482387 | 7_2:-56897471 | None:intergenic |
| ATCAAAGAATTCACCCCACC+AGG | 0.485860 | 7_2:-56898104 | None:intergenic |
| CTACACTATAGAAGTTGAAA+AGG | 0.488723 | 7_2:+56899481 | Msa1064370:CDS |
| TATGCCTAAGAGTGAGTTAA+GGG | 0.489546 | 7_2:+56898148 | Msa1064370:CDS |
| TTGTGAAGTGTCTTTCTTGG+AGG | 0.498038 | 7_2:+56897841 | Msa1064370:CDS |
| ATCAAGTGGGAGATTGTAGT+TGG | 0.499306 | 7_2:+56899407 | Msa1064370:CDS |
| AAAAGCATTGAAACAGTTGA+AGG | 0.500192 | 7_2:+56897674 | Msa1064370:CDS |
| TTTCTCTGAGGATTTGAGGT+TGG | 0.500900 | 7_2:-56897652 | None:intergenic |
| TTATGGTGTGTTCAAAGATA+AGG | 0.503248 | 7_2:+56897980 | Msa1064370:CDS |
| CTTCCATTGATGGTGAATGA+GGG | 0.503374 | 7_2:-56897470 | None:intergenic |
| AATTGAGTGATTATGGTCAT+TGG | 0.505043 | 7_2:+56899927 | Msa1064370:three_prime_UTR |
| TATCAAAATTCTTCAAGAGC+AGG | 0.506972 | 7_2:-56899962 | None:intergenic |
| TACTCATGGGTTTGATAGAG+AGG | 0.507545 | 7_2:+56897935 | Msa1064370:CDS |
| TTGGGATTCAAAGAGCTTGA+AGG | 0.513195 | 7_2:+56897900 | Msa1064370:CDS |
| TTAACAGTGAACTCAGAAGC+TGG | 0.523617 | 7_2:-56898942 | None:intergenic |
| GAGACAAAGAAAAGAAACAT+AGG | 0.532207 | 7_2:-56897302 | None:intergenic |
| AGGCTTAATTGCATATCAGA+TGG | 0.543533 | 7_2:-56899656 | None:intergenic |
| GACCGAGAGTACCATAATGC+CGG | 0.550985 | 7_2:-56899561 | None:intergenic |
| CGGTCGATAACTCTGCCTCT+AGG | 0.552178 | 7_2:+56899579 | Msa1064370:CDS |
| TTTACAGTTTAAACCTGGTG+GGG | 0.553174 | 7_2:+56898091 | Msa1064370:CDS |
| TAAGCCTCAAAATCAAATAG+TGG | 0.553201 | 7_2:+56899672 | Msa1064370:CDS |
| AGCCGGCATTATGGTACTCT+CGG | 0.554951 | 7_2:+56899559 | Msa1064370:CDS |
| TGGGGTGTTTGTTTGATCAA+AGG | 0.560070 | 7_2:+56897741 | Msa1064370:CDS |
| TGCATGGAAATGGTGAATGA+AGG | 0.567134 | 7_2:-56897420 | None:intergenic |
| ACTCATGGGTTTGATAGAGA+GGG | 0.567192 | 7_2:+56897936 | Msa1064370:CDS |
| ATTTGGTGCTGAAAATGTTG+TGG | 0.567986 | 7_2:+56897869 | Msa1064370:CDS |
| AATATTCCAATTCAATATGG+TGG | 0.569255 | 7_2:+56898879 | Msa1064370:CDS |
| GGGTTCAAGTTCTTGAGAGA+GGG | 0.569611 | 7_2:+56898060 | Msa1064370:CDS |
| GATCAAACAAACACCCCACA+TGG | 0.575221 | 7_2:-56897736 | None:intergenic |
| AACAACAATGGTTCCATGTG+GGG | 0.581025 | 7_2:+56897723 | Msa1064370:CDS |
| TCCATGCAGAAATTTCATCT+GGG | 0.581919 | 7_2:+56897435 | Msa1064370:exon |
| TCATTCACATCAAAAGAAGC+CGG | 0.584067 | 7_2:+56899542 | Msa1064370:CDS |
| AAGTGGGAGATTGTAGTTGG+AGG | 0.586468 | 7_2:+56899410 | Msa1064370:CDS |
| CAACAACAATGGTTCCATGT+GGG | 0.588302 | 7_2:+56897722 | Msa1064370:CDS |
| AGATAAGGAAATGTATGAGA+AGG | 0.595028 | 7_2:+56897995 | Msa1064370:CDS |
| CTATAGAAGTTGAAAAGGCA+AGG | 0.600332 | 7_2:+56899486 | Msa1064370:CDS |
| AGGGTTCAAGTTCTTGAGAG+AGG | 0.610104 | 7_2:+56898059 | Msa1064370:CDS |
| CATACAAATAGAAGGAGTTG+AGG | 0.610399 | 7_2:+56898983 | Msa1064370:CDS |
| CCATAATGATTATAACACAC+AGG | 0.614159 | 7_2:-56897963 | None:intergenic |
| ACCCAGATGAAATTTCTGCA+TGG | 0.617097 | 7_2:-56897436 | None:intergenic |
| CAAAGAAAAGAAACATAGGA+AGG | 0.619311 | 7_2:-56897298 | None:intergenic |
| TACAACATGCTGAAATACCA+TGG | 0.625322 | 7_2:-56898525 | None:intergenic |
| AGAAAGACACTTCACAAGCA+TGG | 0.625599 | 7_2:-56897835 | None:intergenic |
| AGAGTGGTGCAACAATCAAG+TGG | 0.626220 | 7_2:+56899393 | Msa1064370:intron |
| GGACCATTCTGAAAATCACT+AGG | 0.626931 | 7_2:-56898912 | None:intergenic |
| TCTGAGTTCACTGTTAAAGG+AGG | 0.633144 | 7_2:+56898948 | Msa1064370:CDS |
| AAGTTTGTGATCTCTAAGGA+AGG | 0.634705 | 7_2:+56898588 | Msa1064370:CDS |
| TCTGGTGAAATCAACAACAA+TGG | 0.648679 | 7_2:+56897711 | Msa1064370:CDS |
| GAGTGGTGCAACAATCAAGT+GGG | 0.657297 | 7_2:+56899394 | Msa1064370:intron |
| TCAACAACAATGGTTCCATG+TGG | 0.658931 | 7_2:+56897721 | Msa1064370:CDS |
| CATAATGATTATAACACACA+GGG | 0.662377 | 7_2:-56897962 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTTTGTTTTGTTATTT+TGG | + | chr7_2:56898247-56898266 | Msa1064370:intron | 15.0% |
| !!! | AGATGTAATTTTAGAAATTT+TGG | + | chr7_2:56898671-56898690 | Msa1064370:intron | 15.0% |
| !! | ATTATAAAAAGAGAAATTGT+GGG | - | chr7_2:56898807-56898826 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTTCAGATTTATA+AGG | + | chr7_2:56898850-56898869 | Msa1064370:intron | 15.0% |
| !!! | AAATTTAACTACATTTTACA+CGG | + | chr7_2:56899097-56899116 | Msa1064370:intron | 15.0% |
| !! | TGATTTAATCTTGTTAAAAA+AGG | + | chr7_2:56899739-56899758 | Msa1064370:three_prime_UTR | 15.0% |
| !!! | TTATTTTGGTGTTGTTTATT+TGG | + | chr7_2:56898261-56898280 | Msa1064370:intron | 20.0% |
| !! | ACATAATTCAGTGTAATTAT+AGG | - | chr7_2:56898373-56898392 | None:intergenic | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | + | chr7_2:56898392-56898411 | Msa1064370:intron | 20.0% |
| !! | TTTCATGTCATACTAAATAT+AGG | - | chr7_2:56898469-56898488 | None:intergenic | 20.0% |
| !! | TTATAAAAAGAGAAATTGTG+GGG | - | chr7_2:56898806-56898825 | None:intergenic | 20.0% |
| !! | CATTATAAAAAGAGAAATTG+TGG | - | chr7_2:56898808-56898827 | None:intergenic | 20.0% |
| !! | TCTTATTAGAGACTATATAA+TGG | + | chr7_2:56899031-56899050 | Msa1064370:intron | 20.0% |
| !! | ACGTTAAAATTTGTAGTTAA+CGG | - | chr7_2:56899190-56899209 | None:intergenic | 20.0% |
| !!! | TAATACTATTATGTTTTTGC+TGG | + | chr7_2:56899704-56899723 | Msa1064370:three_prime_UTR | 20.0% |
| !! | ATGTAAAAAATAGTGAGAAA+TGG | + | chr7_2:56899797-56899816 | Msa1064370:three_prime_UTR | 20.0% |
| !!! | ATGAAGGTTGATTTTGAAAT+GGG | - | chr7_2:56897407-56897426 | None:intergenic | 25.0% |
| !!! | AATGAAGGTTGATTTTGAAA+TGG | - | chr7_2:56897408-56897427 | None:intergenic | 25.0% |
| ! | CATAATGATTATAACACACA+GGG | - | chr7_2:56897965-56897984 | None:intergenic | 25.0% |
| ! | AAACAAAAACAATGTCATCA+AGG | - | chr7_2:56898239-56898258 | None:intergenic | 25.0% |
| !! | CATAAACATCATTGATGTTT+TGG | - | chr7_2:56898644-56898663 | None:intergenic | 25.0% |
| !!! | AACTTTTGTTTAAACTGCTT+TGG | + | chr7_2:56898711-56898730 | Msa1064370:intron | 25.0% |
| !!! | ACTTTTGTTTAAACTGCTTT+GGG | + | chr7_2:56898712-56898731 | Msa1064370:intron | 25.0% |
| !!! | ATTTTGTTTGATACATAGAC+AGG | - | chr7_2:56898776-56898795 | None:intergenic | 25.0% |
| ! | TATTGAATTGGAATATTCTC+AGG | - | chr7_2:56898876-56898895 | None:intergenic | 25.0% |
| ! | GAGAATATTCCAATTCAATA+TGG | + | chr7_2:56898876-56898895 | Msa1064370:CDS | 25.0% |
| ! | AATATTCCAATTCAATATGG+TGG | + | chr7_2:56898879-56898898 | Msa1064370:CDS | 25.0% |
| ! | AAAGTGAACATACAAATAGA+AGG | + | chr7_2:56898975-56898994 | Msa1064370:CDS | 25.0% |
| ! | GACTATATAATGGTTACTTA+TGG | + | chr7_2:56899041-56899060 | Msa1064370:intron | 25.0% |
| ! | TAATGGTTACTTATGGTTTA+AGG | + | chr7_2:56899048-56899067 | Msa1064370:intron | 25.0% |
| !!! | GTGTATTGTTGTTGTATTTT+CGG | - | chr7_2:56899637-56899656 | None:intergenic | 25.0% |
| ! | TTGTTAAAAAAGGAACTTAG+TGG | + | chr7_2:56899749-56899768 | Msa1064370:three_prime_UTR | 25.0% |
| GAGACAAAGAAAAGAAACAT+AGG | - | chr7_2:56897305-56897324 | None:intergenic | 30.0% | |
| !!! | TGAAGGTTGATTTTGAAATG+GGG | - | chr7_2:56897406-56897425 | None:intergenic | 30.0% |
| ATGAAATTTCTGCATGGAAA+TGG | - | chr7_2:56897433-56897452 | None:intergenic | 30.0% | |
| ! | TTTCTTGGAGTTTCTAGAAA+TGG | - | chr7_2:56897534-56897553 | None:intergenic | 30.0% |
| !!! | GTTCTTTTGTTTGGTTTTGA+GGG | - | chr7_2:56897561-56897580 | None:intergenic | 30.0% |
| AACCATAGTCACAACATTAA+TGG | + | chr7_2:56897578-56897597 | Msa1064370:CDS | 30.0% | |
| TTCCATTAATGTTGTGACTA+TGG | - | chr7_2:56897583-56897602 | None:intergenic | 30.0% | |
| ! | TTTGAGGTTGGAAATGAAAT+AGG | - | chr7_2:56897643-56897662 | None:intergenic | 30.0% |
| !!! | TTTCAATGCTTTTTTCTCTG+AGG | - | chr7_2:56897667-56897686 | None:intergenic | 30.0% |
| !! | AAAAGCATTGAAACAGTTGA+AGG | + | chr7_2:56897674-56897693 | Msa1064370:CDS | 30.0% |
| AAGGAAAAACTCTTAACTTC+TGG | + | chr7_2:56897693-56897712 | Msa1064370:CDS | 30.0% | |
| AAATGTTGTGGATGAAGATT+TGG | + | chr7_2:56897881-56897900 | Msa1064370:CDS | 30.0% | |
| AATGTTGTGGATGAAGATTT+GGG | + | chr7_2:56897882-56897901 | Msa1064370:CDS | 30.0% | |
| CCATAATGATTATAACACAC+AGG | - | chr7_2:56897966-56897985 | None:intergenic | 30.0% | |
| CCTGTGTGTTATAATCATTA+TGG | + | chr7_2:56897963-56897982 | Msa1064370:CDS | 30.0% | |
| TTATGGTGTGTTCAAAGATA+AGG | + | chr7_2:56897980-56897999 | Msa1064370:CDS | 30.0% | |
| AGATAAGGAAATGTATGAGA+AGG | + | chr7_2:56897995-56898014 | Msa1064370:CDS | 30.0% | |
| ! | GAAATGTATGAGAAGGTTTT+TGG | + | chr7_2:56898002-56898021 | Msa1064370:CDS | 30.0% |
| !! | AGTTGAAGAAGTTTTTGAGA+TGG | + | chr7_2:56898036-56898055 | Msa1064370:CDS | 30.0% |
| ! | AAGCTTTTACAGTTTAAACC+TGG | + | chr7_2:56898086-56898105 | Msa1064370:CDS | 30.0% |
| ! | TTTTACAGTTTAAACCTGGT+GGG | + | chr7_2:56898090-56898109 | Msa1064370:CDS | 30.0% |
| ! | GATTCAAGTTACTGATCTTA+AGG | + | chr7_2:56898124-56898143 | Msa1064370:CDS | 30.0% |
| TCAAGATAACTATCCTGAAA+TGG | + | chr7_2:56898199-56898218 | Msa1064370:CDS | 30.0% | |
| ! | TTAGTTCTTTGAGTCAGAAA+TGG | - | chr7_2:56898564-56898583 | None:intergenic | 30.0% |
| AGTAAAAGTAAAGCCTAGAA+TGG | - | chr7_2:56898745-56898764 | None:intergenic | 30.0% | |
| !! | AGGCTTTACTTTTACTGAAT+TGG | + | chr7_2:56898749-56898768 | Msa1064370:intron | 30.0% |
| !! | CGTGATTAGTCACAATTTTT+AGG | + | chr7_2:56899207-56899226 | Msa1064370:intron | 30.0% |
| ! | AGTTGAAACATCTGAAATCA+GGG | + | chr7_2:56899247-56899266 | Msa1064370:intron | 30.0% |
| ! | TCACTAATTGTTGATTAGAG+TGG | + | chr7_2:56899377-56899396 | Msa1064370:intron | 30.0% |
| CTACACTATAGAAGTTGAAA+AGG | + | chr7_2:56899481-56899500 | Msa1064370:CDS | 30.0% | |
| TAAGCCTCAAAATCAAATAG+TGG | + | chr7_2:56899672-56899691 | Msa1064370:CDS | 30.0% | |
| ACAAGTGAATTGAGTGATTA+TGG | + | chr7_2:56899920-56899939 | Msa1064370:three_prime_UTR | 30.0% | |
| AATTGAGTGATTATGGTCAT+TGG | + | chr7_2:56899927-56899946 | Msa1064370:three_prime_UTR | 30.0% | |
| TATCAAAATTCTTCAAGAGC+AGG | - | chr7_2:56899965-56899984 | None:intergenic | 30.0% | |
| TTCCATGCAGAAATTTCATC+TGG | + | chr7_2:56897434-56897453 | Msa1064370:exon | 35.0% | |
| TCCATGCAGAAATTTCATCT+GGG | + | chr7_2:56897435-56897454 | Msa1064370:exon | 35.0% | |
| ! | TTTCTAGAAATGGTGTGCTT+AGG | - | chr7_2:56897524-56897543 | None:intergenic | 35.0% |
| !!! | GGTTCTTTTGTTTGGTTTTG+AGG | - | chr7_2:56897562-56897581 | None:intergenic | 35.0% |
| ! | GTGACTATGGTTCTTTTGTT+TGG | - | chr7_2:56897570-56897589 | None:intergenic | 35.0% |
| !!! | CTTTTTTCTCTGAGGATTTG+AGG | - | chr7_2:56897659-56897678 | None:intergenic | 35.0% |
| TCTGGTGAAATCAACAACAA+TGG | + | chr7_2:56897711-56897730 | Msa1064370:CDS | 35.0% | |
| CTTTCTTGGAGGAAAGAATT+TGG | + | chr7_2:56897852-56897871 | Msa1064370:CDS | 35.0% | |
| !! | ATTTGGTGCTGAAAATGTTG+TGG | + | chr7_2:56897869-56897888 | Msa1064370:CDS | 35.0% |
| !!! | GTGTTGTTGCTTTTACTCAT+GGG | + | chr7_2:56897922-56897941 | Msa1064370:CDS | 35.0% |
| !!! | TGAAGAAGTTTTTGAGATGG+AGG | + | chr7_2:56898039-56898058 | Msa1064370:CDS | 35.0% |
| !!! | GAAGAAGTTTTTGAGATGGA+GGG | + | chr7_2:56898040-56898059 | Msa1064370:CDS | 35.0% |
| ! | CTTTTACAGTTTAAACCTGG+TGG | + | chr7_2:56898089-56898108 | Msa1064370:CDS | 35.0% |
| TTTACAGTTTAAACCTGGTG+GGG | + | chr7_2:56898091-56898110 | Msa1064370:CDS | 35.0% | |
| ATATGCCTAAGAGTGAGTTA+AGG | + | chr7_2:56898147-56898166 | Msa1064370:CDS | 35.0% | |
| TATGCCTAAGAGTGAGTTAA+GGG | + | chr7_2:56898148-56898167 | Msa1064370:CDS | 35.0% | |
| ! | AGAAGTGTATGTGCTTCATA+GGG | - | chr7_2:56898318-56898337 | None:intergenic | 35.0% |
| ! | AAGAAGTGTATGTGCTTCAT+AGG | - | chr7_2:56898319-56898338 | None:intergenic | 35.0% |
| TATGAAGCACATACACTTCT+TGG | + | chr7_2:56898318-56898337 | Msa1064370:intron | 35.0% | |
| GTAATTATAGGTGTCAGTGT+CGG | - | chr7_2:56898361-56898380 | None:intergenic | 35.0% | |
| TCTCAAATTATTAGCGGTGT+CGG | + | chr7_2:56898398-56898417 | Msa1064370:intron | 35.0% | |
| ! | AGATTTTCATCAATGTGCCA+TGG | + | chr7_2:56898508-56898527 | Msa1064370:intron | 35.0% |
| TACAACATGCTGAAATACCA+TGG | - | chr7_2:56898528-56898547 | None:intergenic | 35.0% | |
| ! | AAGTTTGTGATCTCTAAGGA+AGG | + | chr7_2:56898588-56898607 | Msa1064370:CDS | 35.0% |
| ! | TTTGGGATTGTTTCCATTCT+AGG | + | chr7_2:56898729-56898748 | Msa1064370:intron | 35.0% |
| CATACAAATAGAAGGAGTTG+AGG | + | chr7_2:56898983-56899002 | Msa1064370:CDS | 35.0% | |
| AATTTGTAGTTAACGGTAGC+TGG | - | chr7_2:56899183-56899202 | None:intergenic | 35.0% | |
| ! | CAGTTGAAACATCTGAAATC+AGG | + | chr7_2:56899246-56899265 | Msa1064370:intron | 35.0% |
| GTAGCAAATTGCTTTCACAT+TGG | - | chr7_2:56899329-56899348 | None:intergenic | 35.0% | |
| CTATAGAAGTTGAAAAGGCA+AGG | + | chr7_2:56899486-56899505 | Msa1064370:CDS | 35.0% | |
| TCATTCACATCAAAAGAAGC+CGG | + | chr7_2:56899542-56899561 | Msa1064370:CDS | 35.0% | |
| AGGCTTAATTGCATATCAGA+TGG | - | chr7_2:56899659-56899678 | None:intergenic | 35.0% | |
| !! | GTGACCACTATTTGATTTTG+AGG | - | chr7_2:56899679-56899698 | None:intergenic | 35.0% |
| GTGGTGTATTAGTACTTGTT+TGG | + | chr7_2:56899768-56899787 | Msa1064370:three_prime_UTR | 35.0% | |
| !! | ATTGTGATGAGTTTTGTCAG+AGG | + | chr7_2:56899864-56899883 | Msa1064370:three_prime_UTR | 35.0% |
| !! | TTGTGATGAGTTTTGTCAGA+GGG | + | chr7_2:56899865-56899884 | Msa1064370:three_prime_UTR | 35.0% |
| TGCATGGAAATGGTGAATGA+AGG | - | chr7_2:56897423-56897442 | None:intergenic | 40.0% | |
| ACCCAGATGAAATTTCTGCA+TGG | - | chr7_2:56897439-56897458 | None:intergenic | 40.0% | |
| AATCCCTCATTCACCATCAA+TGG | + | chr7_2:56897467-56897486 | Msa1064370:CDS | 40.0% | |
| !! | CTTCCATTGATGGTGAATGA+GGG | - | chr7_2:56897473-56897492 | None:intergenic | 40.0% |
| !! | TCTTCCATTGATGGTGAATG+AGG | - | chr7_2:56897474-56897493 | None:intergenic | 40.0% |
| GAGTGATCTTCTTCCATTGA+TGG | - | chr7_2:56897483-56897502 | None:intergenic | 40.0% | |
| !!! | GGTTTTGAGGGAGTTTTTCT+TGG | - | chr7_2:56897549-56897568 | None:intergenic | 40.0% |
| ! | TTTCTCTGAGGATTTGAGGT+TGG | - | chr7_2:56897655-56897674 | None:intergenic | 40.0% |
| TCAACAACAATGGTTCCATG+TGG | + | chr7_2:56897721-56897740 | Msa1064370:CDS | 40.0% | |
| CAACAACAATGGTTCCATGT+GGG | + | chr7_2:56897722-56897741 | Msa1064370:CDS | 40.0% | |
| AACAACAATGGTTCCATGTG+GGG | + | chr7_2:56897723-56897742 | Msa1064370:CDS | 40.0% | |
| ! | TGGGGTGTTTGTTTGATCAA+AGG | + | chr7_2:56897741-56897760 | Msa1064370:CDS | 40.0% |
| AGAAAGACACTTCACAAGCA+TGG | - | chr7_2:56897838-56897857 | None:intergenic | 40.0% | |
| ! | TGCTTGTGAAGTGTCTTTCT+TGG | + | chr7_2:56897838-56897857 | Msa1064370:CDS | 40.0% |
| ! | TTGTGAAGTGTCTTTCTTGG+AGG | + | chr7_2:56897841-56897860 | Msa1064370:CDS | 40.0% |
| TTGGGATTCAAAGAGCTTGA+AGG | + | chr7_2:56897900-56897919 | Msa1064370:CDS | 40.0% | |
| !!! | GGTGTTGTTGCTTTTACTCA+TGG | + | chr7_2:56897921-56897940 | Msa1064370:CDS | 40.0% |
| TACTCATGGGTTTGATAGAG+AGG | + | chr7_2:56897935-56897954 | Msa1064370:CDS | 40.0% | |
| ACTCATGGGTTTGATAGAGA+GGG | + | chr7_2:56897936-56897955 | Msa1064370:CDS | 40.0% | |
| ACAACCCTTAACTCACTCTT+AGG | - | chr7_2:56898155-56898174 | None:intergenic | 40.0% | |
| TGTAACCTATGACGCAGATA+CGG | - | chr7_2:56898446-56898465 | None:intergenic | 40.0% | |
| GAGCAAGTTTGTGATCTCTA+AGG | + | chr7_2:56898584-56898603 | Msa1064370:CDS | 40.0% | |
| CTCAGTCCACCATATTGAAT+TGG | - | chr7_2:56898888-56898907 | None:intergenic | 40.0% | |
| ! | CGACCTAGTGATTTTCAGAA+TGG | + | chr7_2:56898909-56898928 | Msa1064370:CDS | 40.0% |
| ! | GGACCATTCTGAAAATCACT+AGG | - | chr7_2:56898915-56898934 | None:intergenic | 40.0% |
| !!! | TGAACTCAGAAGCTGGTTTT+GGG | - | chr7_2:56898938-56898957 | None:intergenic | 40.0% |
| TTAACAGTGAACTCAGAAGC+TGG | - | chr7_2:56898945-56898964 | None:intergenic | 40.0% | |
| GCTTCTGAGTTCACTGTTAA+AGG | + | chr7_2:56898945-56898964 | Msa1064370:CDS | 40.0% | |
| TCTGAGTTCACTGTTAAAGG+AGG | + | chr7_2:56898948-56898967 | Msa1064370:CDS | 40.0% | |
| !!! | AGGTTCTGAGTTCGAACTTT+TGG | + | chr7_2:56899068-56899087 | Msa1064370:intron | 40.0% |
| ATCAAGTGGGAGATTGTAGT+TGG | + | chr7_2:56899407-56899426 | Msa1064370:CDS | 40.0% | |
| ! | TGTAGCTAGCTTCTGCATTT+GGG | - | chr7_2:56899466-56899485 | None:intergenic | 40.0% |
| ATCAAAAGAAGCCGGCATTA+TGG | + | chr7_2:56899550-56899569 | Msa1064370:CDS | 40.0% | |
| !!! | AGCGACTTTTTTCTTCCTAG+AGG | - | chr7_2:56899597-56899616 | None:intergenic | 40.0% |
| GATCAAACAAACACCCCACA+TGG | - | chr7_2:56897739-56897758 | None:intergenic | 45.0% | |
| ! | AGGGTTCAAGTTCTTGAGAG+AGG | + | chr7_2:56898059-56898078 | Msa1064370:CDS | 45.0% |
| ! | GGGTTCAAGTTCTTGAGAGA+GGG | + | chr7_2:56898060-56898079 | Msa1064370:CDS | 45.0% |
| ATCAAAGAATTCACCCCACC+AGG | - | chr7_2:56898107-56898126 | None:intergenic | 45.0% | |
| TCCTGAAATGGTTGCTCGTA+AGG | + | chr7_2:56898211-56898230 | Msa1064370:CDS | 45.0% | |
| ACCTTACGAGCAACCATTTC+AGG | - | chr7_2:56898215-56898234 | None:intergenic | 45.0% | |
| !!! | AACTCAGAAGCTGGTTTTGG+GGG | - | chr7_2:56898936-56898955 | None:intergenic | 45.0% |
| !!! | GAACTCAGAAGCTGGTTTTG+GGG | - | chr7_2:56898937-56898956 | None:intergenic | 45.0% |
| !! | GTGAACTCAGAAGCTGGTTT+TGG | - | chr7_2:56898939-56898958 | None:intergenic | 45.0% |
| AGAGTGGTGCAACAATCAAG+TGG | + | chr7_2:56899393-56899412 | Msa1064370:intron | 45.0% | |
| GAGTGGTGCAACAATCAAGT+GGG | + | chr7_2:56899394-56899413 | Msa1064370:intron | 45.0% | |
| AAGTGGGAGATTGTAGTTGG+AGG | + | chr7_2:56899410-56899429 | Msa1064370:CDS | 45.0% | |
| ! | GTGTAGCTAGCTTCTGCATT+TGG | - | chr7_2:56899467-56899486 | None:intergenic | 45.0% |
| !! | ATAGGTGTCAGTGTCGGTGT+CGG | - | chr7_2:56898355-56898374 | None:intergenic | 50.0% |
| GGAGATTGTAGTTGGAGGCT+GGG | + | chr7_2:56899415-56899434 | Msa1064370:CDS | 50.0% | |
| TGTAGTTGGAGGCTGGGATT+TGG | + | chr7_2:56899421-56899440 | Msa1064370:CDS | 50.0% | |
| AGCCGGCATTATGGTACTCT+CGG | + | chr7_2:56899559-56899578 | Msa1064370:CDS | 50.0% | |
| !! | GACCGAGAGTACCATAATGC+CGG | - | chr7_2:56899564-56899583 | None:intergenic | 50.0% |
| CGTGTCCGTATCTGCGTCAT+AGG | + | chr7_2:56898438-56898457 | Msa1064370:intron | 55.0% | |
| GGGAGATTGTAGTTGGAGGC+TGG | + | chr7_2:56899414-56899433 | Msa1064370:CDS | 55.0% | |
| CGGTCGATAACTCTGCCTCT+AGG | + | chr7_2:56899579-56899598 | Msa1064370:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 56897299 | 56899997 | 56897299 | ID=Msa1064370;Name=Msa1064370 |
| chr7_2 | mRNA | 56897299 | 56899997 | 56897299 | ID=Msa1064370-mRNA-1;Parent=Msa1064370;Name=Msa1064370-mRNA-1;_AED=0.03;_eAED=0.03;_QI=139|1|1|1|1|1|4|306|452 |
| chr7_2 | exon | 56897299 | 56898232 | 56897299 | ID=Msa1064370-mRNA-1:exon:10814;Parent=Msa1064370-mRNA-1 |
| chr7_2 | exon | 56898510 | 56898634 | 56898510 | ID=Msa1064370-mRNA-1:exon:10815;Parent=Msa1064370-mRNA-1 |
| chr7_2 | exon | 56898863 | 56899004 | 56898863 | ID=Msa1064370-mRNA-1:exon:10816;Parent=Msa1064370-mRNA-1 |
| chr7_2 | exon | 56899395 | 56899997 | 56899395 | ID=Msa1064370-mRNA-1:exon:10817;Parent=Msa1064370-mRNA-1 |
| chr7_2 | five_prime_UTR | 56897299 | 56897437 | 56897299 | ID=Msa1064370-mRNA-1:five_prime_utr;Parent=Msa1064370-mRNA-1 |
| chr7_2 | CDS | 56897438 | 56898232 | 56897438 | ID=Msa1064370-mRNA-1:cds;Parent=Msa1064370-mRNA-1 |
| chr7_2 | CDS | 56898510 | 56898634 | 56898510 | ID=Msa1064370-mRNA-1:cds;Parent=Msa1064370-mRNA-1 |
| chr7_2 | CDS | 56898863 | 56899004 | 56898863 | ID=Msa1064370-mRNA-1:cds;Parent=Msa1064370-mRNA-1 |
| chr7_2 | CDS | 56899395 | 56899691 | 56899395 | ID=Msa1064370-mRNA-1:cds;Parent=Msa1064370-mRNA-1 |
| chr7_2 | three_prime_UTR | 56899692 | 56899997 | 56899692 | ID=Msa1064370-mRNA-1:three_prime_utr;Parent=Msa1064370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
