Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662110 | XP_024639419.1 | 93.103 | 551 | 28 | 6 | 1 | 547 | 1 | 545 | 0.0 | 1004 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662110 | sp|Q84Z02|CRL5_ORYSJ | 56.044 | 364 | 92 | 7 | 247 | 547 | 281 | 639 | 5.42e-120 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0662110 | TF | AP2/ERF-AP2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0662110 | 0.831109 | 2.010533e-55 | -8.615850e-47 |
| Msa0002580 | Msa0662110 | 0.805860 | 1.088668e-49 | -8.615850e-47 |
| Msa0050660 | Msa0662110 | 0.812275 | 4.602240e-51 | -8.615850e-47 |
| Msa0050700 | Msa0662110 | 0.815960 | 7.072604e-52 | -8.615850e-47 |
| Msa0050790 | Msa0662110 | 0.819186 | 1.325778e-52 | -8.615850e-47 |
| Msa0657440 | Msa0662110 | 0.811542 | 6.644577e-51 | -8.615850e-47 |
| Msa0662110 | Msa0675330 | 0.812939 | 3.293150e-51 | -8.615850e-47 |
| Msa0662110 | Msa0693890 | 0.809385 | 1.942374e-50 | -8.615850e-47 |
| Msa0662110 | Msa0748910 | 0.803968 | 2.706268e-49 | -8.615850e-47 |
| Msa0662110 | Msa0755930 | 0.877769 | 4.816682e-69 | -8.615850e-47 |
| Msa0662110 | Msa0795870 | 0.804912 | 1.719777e-49 | -8.615850e-47 |
| Msa0662110 | Msa0819170 | 0.803578 | 3.261376e-49 | -8.615850e-47 |
| Msa0662110 | Msa0829300 | 0.801413 | 9.111734e-49 | -8.615850e-47 |
| Msa0662110 | Msa0833650 | 0.807657 | 4.540646e-50 | -8.615850e-47 |
| Msa0662110 | Msa0859290 | 0.802742 | 4.856223e-49 | -8.615850e-47 |
| Msa0662110 | Msa1009950 | 0.809816 | 1.569267e-50 | -8.615850e-47 |
| Msa0662110 | Msa1021590 | 0.801861 | 7.373391e-49 | -8.615850e-47 |
| Msa0662110 | Msa1042160 | 0.806307 | 8.767643e-50 | -8.615850e-47 |
| Msa0662110 | Msa1042190 | 0.808666 | 2.768066e-50 | -8.615850e-47 |
| Msa0662110 | Msa1044680 | 0.825465 | 4.619801e-54 | -8.615850e-47 |
| Msa0662110 | Msa1105640 | 0.824401 | 8.232729e-54 | -8.615850e-47 |
| Msa0662110 | Msa1132840 | 0.809733 | 1.635282e-50 | -8.615850e-47 |
| Msa0662110 | Msa1148960 | 0.802442 | 5.599763e-49 | -8.615850e-47 |
| Msa0662110 | Msa1167470 | 0.803961 | 2.714901e-49 | -8.615850e-47 |
| Msa0662110 | Msa1265650 | 0.809066 | 2.273886e-50 | -8.615850e-47 |
| Msa0662110 | Msa1303560 | 0.803474 | 3.427257e-49 | -8.615850e-47 |
| Msa0662110 | Msa1303650 | 0.806137 | 9.520501e-50 | -8.615850e-47 |
| Msa0662110 | Msa1372040 | 0.806782 | 6.959538e-50 | -8.615850e-47 |
| Msa0662110 | Msa1409410 | 0.800972 | 1.121523e-48 | -8.615850e-47 |
| Msa0662110 | Msa1415540 | 0.805812 | 1.114414e-49 | -8.615850e-47 |
| Msa0662110 | Msa1427100 | 0.808614 | 2.840053e-50 | -8.615850e-47 |
| Msa0662110 | Msa1440630 | 0.819927 | 8.978520e-53 | -8.615850e-47 |
| Msa0185820 | Msa0662110 | 0.932485 | 7.940252e-95 | -8.615850e-47 |
| Msa0188610 | Msa0662110 | 0.832135 | 1.123284e-55 | -8.615850e-47 |
| Msa0230800 | Msa0662110 | 0.802241 | 6.159047e-49 | -8.615850e-47 |
| Msa0369790 | Msa0662110 | 0.816756 | 4.694052e-52 | -8.615850e-47 |
| Msa0436910 | Msa0662110 | 0.812527 | 4.053335e-51 | -8.615850e-47 |
| Msa0464000 | Msa0662110 | 0.816014 | 6.879993e-52 | -8.615850e-47 |
| Msa0244640 | Msa0662110 | 0.832675 | 8.257136e-56 | -8.615850e-47 |
| Msa0270340 | Msa0662110 | 0.827241 | 1.744507e-54 | -8.615850e-47 |
| Msa0283330 | Msa0662110 | 0.800886 | 1.167521e-48 | -8.615850e-47 |
| Msa0509550 | Msa0662110 | 0.811111 | 8.243737e-51 | -8.615850e-47 |
| Msa0519750 | Msa0662110 | 0.812406 | 4.309278e-51 | -8.615850e-47 |
| Msa0519830 | Msa0662110 | 0.817449 | 3.278948e-52 | -8.615850e-47 |
| Msa0528570 | Msa0662110 | 0.819522 | 1.111433e-52 | -8.615850e-47 |
| Msa0529030 | Msa0662110 | 0.801218 | 9.986875e-49 | -8.615850e-47 |
| Msa0530780 | Msa0662110 | 0.803826 | 2.896015e-49 | -8.615850e-47 |
| Msa0541300 | Msa0662110 | 0.816455 | 5.482450e-52 | -8.615850e-47 |
| Msa0541310 | Msa0662110 | 0.813053 | 3.109447e-51 | -8.615850e-47 |
| Msa0557460 | Msa0662110 | 0.803441 | 3.481091e-49 | -8.615850e-47 |
| Msa0580370 | Msa0662110 | 0.811238 | 7.736790e-51 | -8.615850e-47 |
| Msa0585020 | Msa0662110 | 0.815095 | 1.101999e-51 | -8.615850e-47 |
| Msa0597270 | Msa0662110 | 0.813373 | 2.645176e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662110 | MtrunA17_Chr5g0400871 | 92.922 | 551 | 28 | 7 | 1 | 547 | 1 | 544 | 0.0 | 997 |
| Msa0662110 | MtrunA17_Chr4g0054351 | 48.755 | 683 | 189 | 27 | 1 | 547 | 1 | 658 | 1.69e-161 | 474 |
| Msa0662110 | MtrunA17_Chr3g0135161 | 49.679 | 467 | 171 | 11 | 35 | 445 | 45 | 503 | 2.36e-132 | 400 |
| Msa0662110 | MtrunA17_Chr1g0152161 | 48.780 | 533 | 158 | 20 | 100 | 547 | 158 | 660 | 2.21e-126 | 384 |
| Msa0662110 | MtrunA17_Chr8g0343851 | 82.011 | 189 | 33 | 1 | 247 | 435 | 244 | 431 | 9.04e-111 | 342 |
| Msa0662110 | MtrunA17_Chr2g0328971 | 75.253 | 198 | 47 | 2 | 247 | 443 | 163 | 359 | 4.05e-105 | 325 |
| Msa0662110 | MtrunA17_Chr4g0072291 | 81.461 | 178 | 29 | 2 | 247 | 421 | 155 | 331 | 8.70e-104 | 321 |
| Msa0662110 | MtrunA17_Chr4g0032631 | 64.228 | 246 | 71 | 5 | 202 | 443 | 126 | 358 | 1.35e-103 | 322 |
| Msa0662110 | MtrunA17_Chr7g0249621 | 66.525 | 236 | 62 | 3 | 211 | 443 | 232 | 453 | 2.80e-103 | 325 |
| Msa0662110 | MtrunA17_Chr5g0412151 | 74.619 | 197 | 46 | 2 | 247 | 440 | 220 | 415 | 6.29e-91 | 288 |
| Msa0662110 | MtrunA17_Chr4g0073521 | 70.659 | 167 | 48 | 1 | 250 | 416 | 46 | 211 | 5.19e-81 | 257 |
| Msa0662110 | MtrunA17_Chr8g0355191 | 66.667 | 180 | 57 | 2 | 239 | 416 | 41 | 219 | 1.53e-77 | 250 |
| Msa0662110 | MtrunA17_Chr7g0216601 | 65.882 | 170 | 54 | 2 | 250 | 416 | 64 | 232 | 2.50e-73 | 238 |
| Msa0662110 | MtrunA17_Chr6g0452911 | 57.426 | 202 | 75 | 2 | 225 | 416 | 35 | 235 | 7.02e-72 | 234 |
| Msa0662110 | MtrunA17_Chr8g0355181 | 60.396 | 202 | 73 | 3 | 221 | 416 | 20 | 220 | 4.82e-71 | 232 |
| Msa0662110 | MtrunA17_Chr4g0002011 | 67.059 | 170 | 52 | 2 | 250 | 416 | 35 | 203 | 7.89e-69 | 224 |
| Msa0662110 | MtrunA17_Chr8g0367311 | 62.921 | 178 | 54 | 4 | 288 | 454 | 22 | 198 | 6.69e-68 | 219 |
| Msa0662110 | MtrunA17_Chr8g0362541 | 58.794 | 199 | 66 | 3 | 250 | 434 | 68 | 264 | 4.28e-66 | 220 |
| Msa0662110 | MtrunA17_Chr7g0257361 | 63.359 | 131 | 39 | 2 | 249 | 376 | 55 | 179 | 6.16e-41 | 152 |
| Msa0662110 | MtrunA17_Chr2g0305821 | 68.519 | 108 | 34 | 0 | 250 | 357 | 46 | 153 | 7.07e-41 | 145 |
| Msa0662110 | MtrunA17_Chr4g0053181 | 51.429 | 175 | 70 | 4 | 254 | 425 | 176 | 338 | 7.24e-40 | 152 |
| Msa0662110 | MtrunA17_Chr5g0401891 | 52.071 | 169 | 66 | 4 | 254 | 419 | 152 | 308 | 7.93e-39 | 149 |
| Msa0662110 | MtrunA17_Chr7g0263581 | 49.112 | 169 | 71 | 4 | 254 | 419 | 139 | 295 | 4.85e-37 | 143 |
| Msa0662110 | MtrunA17_Chr4g0030191 | 49.112 | 169 | 71 | 4 | 254 | 419 | 131 | 287 | 1.14e-36 | 142 |
| Msa0662110 | MtrunA17_Chr2g0325911 | 46.154 | 169 | 61 | 5 | 254 | 419 | 134 | 275 | 2.14e-29 | 120 |
| Msa0662110 | MtrunA17_Chr2g0305831 | 71.930 | 57 | 16 | 0 | 360 | 416 | 3 | 59 | 6.62e-23 | 97.1 |
| Msa0662110 | MtrunA17_Chr3g0126151 | 44.792 | 96 | 51 | 1 | 299 | 394 | 47 | 140 | 1.05e-19 | 85.9 |
| Msa0662110 | MtrunA17_Chr8g0367321 | 73.469 | 49 | 13 | 0 | 241 | 289 | 145 | 193 | 3.13e-19 | 86.3 |
| Msa0662110 | MtrunA17_Chr1g0170761 | 44.643 | 112 | 48 | 4 | 251 | 359 | 134 | 234 | 1.06e-13 | 72.8 |
| Msa0662110 | MtrunA17_Chr4g0044871 | 36.508 | 126 | 71 | 3 | 354 | 473 | 96 | 218 | 7.80e-12 | 65.5 |
| Msa0662110 | MtrunA17_Chr4g0044881 | 36.893 | 103 | 62 | 2 | 354 | 456 | 114 | 213 | 4.27e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662110 | AT4G37750.1 | 42.014 | 576 | 165 | 19 | 55 | 547 | 66 | 555 | 1.02e-117 | 359 |
| Msa0662110 | AT1G72570.1 | 65.145 | 241 | 74 | 3 | 203 | 434 | 166 | 405 | 3.15e-106 | 325 |
| Msa0662110 | AT5G57390.2 | 81.183 | 186 | 30 | 3 | 241 | 423 | 73 | 256 | 3.45e-105 | 323 |
| Msa0662110 | AT1G51190.1 | 63.035 | 257 | 80 | 5 | 191 | 443 | 137 | 382 | 7.69e-105 | 326 |
| Msa0662110 | AT5G57390.1 | 81.183 | 186 | 30 | 3 | 241 | 423 | 191 | 374 | 3.33e-104 | 324 |
| Msa0662110 | AT5G17430.2 | 77.157 | 197 | 41 | 2 | 246 | 439 | 140 | 335 | 2.46e-103 | 321 |
| Msa0662110 | AT5G17430.1 | 77.157 | 197 | 41 | 2 | 246 | 439 | 202 | 397 | 7.50e-103 | 322 |
| Msa0662110 | AT3G20840.1 | 74.129 | 201 | 47 | 3 | 247 | 443 | 174 | 373 | 9.84e-103 | 321 |
| Msa0662110 | AT5G10510.2 | 74.227 | 194 | 49 | 1 | 247 | 440 | 223 | 415 | 8.44e-90 | 286 |
| Msa0662110 | AT5G65510.4 | 68.421 | 209 | 62 | 2 | 230 | 435 | 149 | 356 | 2.94e-88 | 279 |
| Msa0662110 | AT5G65510.2 | 68.421 | 209 | 62 | 2 | 230 | 435 | 207 | 414 | 5.60e-88 | 280 |
| Msa0662110 | AT5G65510.1 | 68.421 | 209 | 62 | 2 | 230 | 435 | 207 | 414 | 5.60e-88 | 280 |
| Msa0662110 | AT5G10510.7 | 73.096 | 197 | 49 | 2 | 247 | 440 | 223 | 418 | 1.15e-87 | 281 |
| Msa0662110 | AT5G10510.5 | 73.096 | 197 | 49 | 2 | 247 | 440 | 223 | 418 | 1.15e-87 | 281 |
| Msa0662110 | AT5G10510.1 | 73.096 | 197 | 49 | 2 | 247 | 440 | 246 | 441 | 1.95e-87 | 281 |
| Msa0662110 | AT5G10510.6 | 73.096 | 197 | 49 | 2 | 247 | 440 | 261 | 456 | 2.09e-87 | 281 |
| Msa0662110 | AT5G10510.4 | 73.096 | 197 | 49 | 2 | 247 | 440 | 261 | 456 | 2.09e-87 | 281 |
| Msa0662110 | AT5G10510.3 | 65.899 | 217 | 50 | 2 | 247 | 440 | 261 | 476 | 4.17e-83 | 271 |
| Msa0662110 | AT5G65510.3 | 72.327 | 159 | 40 | 2 | 230 | 385 | 149 | 306 | 1.77e-77 | 247 |
| Msa0662110 | AT3G54320.3 | 68.824 | 170 | 49 | 2 | 250 | 416 | 61 | 229 | 2.22e-69 | 229 |
| Msa0662110 | AT3G54320.1 | 68.824 | 170 | 49 | 2 | 250 | 416 | 61 | 229 | 2.71e-69 | 229 |
| Msa0662110 | AT1G79700.2 | 65.882 | 170 | 54 | 2 | 250 | 416 | 48 | 216 | 3.05e-60 | 202 |
| Msa0662110 | AT1G16060.1 | 61.905 | 189 | 63 | 3 | 250 | 430 | 54 | 241 | 9.69e-59 | 199 |
| Msa0662110 | AT1G79700.1 | 61.765 | 170 | 51 | 3 | 250 | 416 | 48 | 206 | 1.83e-52 | 181 |
| Msa0662110 | AT3G54320.4 | 70.543 | 129 | 37 | 1 | 288 | 416 | 36 | 163 | 1.63e-51 | 180 |
| Msa0662110 | AT3G54320.5 | 70.543 | 129 | 37 | 1 | 288 | 416 | 36 | 163 | 1.63e-51 | 180 |
| Msa0662110 | AT1G79700.3 | 66.667 | 129 | 42 | 1 | 288 | 416 | 13 | 140 | 2.18e-41 | 149 |
| Msa0662110 | AT1G79700.4 | 66.667 | 129 | 42 | 1 | 288 | 416 | 7 | 134 | 2.43e-41 | 149 |
| Msa0662110 | AT2G41710.1 | 61.654 | 133 | 42 | 2 | 247 | 376 | 63 | 189 | 4.97e-40 | 150 |
| Msa0662110 | AT2G41710.4 | 61.654 | 133 | 42 | 2 | 247 | 376 | 63 | 189 | 7.79e-40 | 151 |
| Msa0662110 | AT1G16060.3 | 61.486 | 148 | 51 | 2 | 288 | 430 | 25 | 171 | 9.86e-40 | 146 |
| Msa0662110 | AT4G36920.1 | 51.479 | 169 | 67 | 4 | 254 | 419 | 131 | 287 | 5.64e-39 | 148 |
| Msa0662110 | AT4G36920.2 | 51.479 | 169 | 67 | 4 | 254 | 419 | 131 | 287 | 5.64e-39 | 148 |
| Msa0662110 | AT5G67180.2 | 47.761 | 201 | 78 | 6 | 254 | 439 | 96 | 284 | 1.64e-38 | 143 |
| Msa0662110 | AT5G67180.1 | 43.946 | 223 | 98 | 6 | 254 | 461 | 96 | 306 | 2.60e-38 | 144 |
| Msa0662110 | AT5G67180.3 | 48.000 | 175 | 82 | 3 | 254 | 428 | 96 | 261 | 4.64e-38 | 141 |
| Msa0662110 | AT2G41710.2 | 59.420 | 138 | 42 | 3 | 247 | 376 | 63 | 194 | 1.19e-37 | 144 |
| Msa0662110 | AT2G28550.3 | 48.521 | 169 | 72 | 4 | 254 | 419 | 153 | 309 | 9.26e-36 | 139 |
| Msa0662110 | AT2G41710.3 | 59.836 | 122 | 40 | 2 | 258 | 376 | 109 | 224 | 1.18e-33 | 133 |
| Msa0662110 | AT3G54320.2 | 70.787 | 89 | 25 | 1 | 328 | 416 | 1 | 88 | 1.51e-30 | 121 |
| Msa0662110 | AT1G16060.2 | 61.111 | 108 | 36 | 2 | 328 | 430 | 1 | 107 | 5.99e-29 | 114 |
| Msa0662110 | AT1G16060.4 | 61.111 | 108 | 36 | 2 | 328 | 430 | 1 | 107 | 5.99e-29 | 114 |
| Msa0662110 | AT1G16060.6 | 61.111 | 108 | 36 | 2 | 328 | 430 | 1 | 107 | 5.99e-29 | 114 |
| Msa0662110 | AT1G16060.5 | 61.111 | 108 | 36 | 2 | 328 | 430 | 1 | 107 | 5.99e-29 | 114 |
| Msa0662110 | AT2G28550.4 | 48.227 | 141 | 58 | 4 | 254 | 391 | 153 | 281 | 1.24e-28 | 117 |
| Msa0662110 | AT2G28550.1 | 44.970 | 169 | 63 | 5 | 254 | 419 | 153 | 294 | 1.59e-28 | 118 |
| Msa0662110 | AT5G67180.4 | 43.452 | 168 | 85 | 4 | 254 | 421 | 96 | 253 | 8.48e-28 | 112 |
| Msa0662110 | AT2G28550.2 | 48.438 | 128 | 51 | 4 | 254 | 378 | 153 | 268 | 7.81e-25 | 104 |
| Msa0662110 | AT2G28550.6 | 48.438 | 128 | 51 | 4 | 254 | 378 | 153 | 268 | 7.81e-25 | 104 |
| Msa0662110 | AT2G39250.2 | 37.838 | 148 | 78 | 4 | 228 | 371 | 81 | 218 | 1.79e-22 | 97.1 |
| Msa0662110 | AT2G39250.1 | 38.095 | 147 | 77 | 4 | 228 | 370 | 81 | 217 | 4.76e-22 | 97.8 |
| Msa0662110 | AT2G28550.5 | 43.939 | 132 | 57 | 2 | 288 | 419 | 14 | 128 | 2.36e-20 | 92.0 |
| Msa0662110 | AT5G60120.4 | 39.506 | 162 | 68 | 6 | 251 | 409 | 157 | 291 | 1.97e-18 | 88.2 |
| Msa0662110 | AT5G60120.3 | 39.506 | 162 | 68 | 6 | 251 | 409 | 157 | 291 | 1.97e-18 | 88.2 |
| Msa0662110 | AT5G60120.5 | 39.506 | 162 | 68 | 6 | 251 | 409 | 157 | 291 | 1.97e-18 | 88.2 |
| Msa0662110 | AT5G60120.6 | 38.889 | 162 | 69 | 5 | 251 | 409 | 157 | 291 | 2.11e-18 | 88.6 |
| Msa0662110 | AT5G60120.1 | 38.889 | 162 | 69 | 5 | 251 | 409 | 157 | 291 | 2.38e-18 | 88.6 |
| Msa0662110 | AT5G60120.2 | 39.506 | 162 | 68 | 6 | 251 | 409 | 157 | 291 | 2.78e-18 | 88.6 |
| Msa0662110 | AT1G16060.7 | 62.821 | 78 | 24 | 1 | 358 | 430 | 8 | 85 | 7.09e-18 | 82.4 |
| Msa0662110 | AT3G54990.2 | 45.192 | 104 | 50 | 2 | 254 | 357 | 122 | 218 | 1.34e-17 | 83.2 |
| Msa0662110 | AT3G54990.1 | 45.794 | 107 | 45 | 3 | 254 | 357 | 122 | 218 | 8.08e-17 | 82.4 |
Find 101 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTCTCTTGTACATGATTT+AGG | 0.152119 | 4_3:-73949026 | None:intergenic |
| ATTTCATCCTCAACTATATT+TGG | 0.179003 | 4_3:-73949174 | None:intergenic |
| GCTTACTTGCATTTCTTCTT+TGG | 0.217497 | 4_3:-73948947 | None:intergenic |
| AAAATATGACGTGGAGAAAA+TGG | 0.277451 | 4_3:+73951618 | Msa0662110:CDS |
| CATAACTATGGATATTACTA+TGG | 0.312407 | 4_3:+73948725 | Msa0662110:CDS |
| GTAGATATGAAGCTCATCTA+TGG | 0.319596 | 4_3:+73949712 | Msa0662110:CDS |
| ACAAGCTTACCAATGCTCTT+TGG | 0.325053 | 4_3:+73951850 | Msa0662110:CDS |
| GTTTCGTTCGGAATTGGATT+AGG | 0.328507 | 4_3:+73951966 | Msa0662110:three_prime_UTR |
| TACGAGCCTGTTGGGGAGTC+TGG | 0.330751 | 4_3:+73949047 | Msa0662110:CDS |
| TCTTCACTGCTAAGAAGGTT+AGG | 0.347377 | 4_3:-73951586 | None:intergenic |
| GCAATGGGAATCTCTCATTA+TGG | 0.348044 | 4_3:+73948916 | Msa0662110:intron |
| GGAAATAAAGATCTCTATCT+TGG | 0.352592 | 4_3:+73950606 | Msa0662110:CDS |
| CCTACACCTCTTCATAACTA+TGG | 0.352711 | 4_3:+73948713 | Msa0662110:CDS |
| AACATGAGAGTTGTTGCTTC+TGG | 0.354947 | 4_3:-73949077 | None:intergenic |
| CAAGAGAATACGAGCCTGTT+GGG | 0.358991 | 4_3:+73949039 | Msa0662110:CDS |
| TATGGCTGCACTCAAGTATT+GGG | 0.360270 | 4_3:+73950104 | Msa0662110:CDS |
| TTTAGGTTATTCAAATTGTT+TGG | 0.361139 | 4_3:-73949009 | None:intergenic |
| TTCTCTTCACAAATGAATAT+AGG | 0.368739 | 4_3:+73948638 | Msa0662110:CDS |
| ATGTTCTTTGCCCAAAGGTT+TGG | 0.385434 | 4_3:-73949401 | None:intergenic |
| CTTGCCACCTTCCATGTTGA+TGG | 0.386912 | 4_3:-73950563 | None:intergenic |
| TATATGTTATTTATTGAGAA+TGG | 0.399769 | 4_3:-73951724 | None:intergenic |
| AAGAATCAGAACCAAACCTT+TGG | 0.415358 | 4_3:+73949390 | Msa0662110:CDS |
| GGAAGGTGGCAAGCTCGAAT+AGG | 0.415431 | 4_3:+73950573 | Msa0662110:CDS |
| GCTCGAATAGGGAGAGTTGC+TGG | 0.417556 | 4_3:+73950585 | Msa0662110:CDS |
| TTGGCTCATGGTATGAAGTT+TGG | 0.418171 | 4_3:-73948990 | None:intergenic |
| AGCTGCAAGAGCTTATGATA+TGG | 0.426373 | 4_3:+73950086 | Msa0662110:CDS |
| CTTCACTGCTAAGAAGGTTA+GGG | 0.437353 | 4_3:-73951585 | None:intergenic |
| GAAGGTGGCAAGCTCGAATA+GGG | 0.444273 | 4_3:+73950574 | Msa0662110:CDS |
| GCTCCGCCAGACTCCCCAAC+AGG | 0.448381 | 4_3:-73949053 | None:intergenic |
| AGTCTTGAAGATGAAGTTCA+TGG | 0.451972 | 4_3:+73948556 | None:intergenic |
| ATCTAAGGAGATGGGTATCA+AGG | 0.454082 | 4_3:+73949202 | Msa0662110:CDS |
| CACATTATCGTTTCTTAAGA+CGG | 0.469666 | 4_3:-73949103 | None:intergenic |
| AAACTTGTCACAATTGAAGA+AGG | 0.470854 | 4_3:-73951793 | None:intergenic |
| ATATGGCTGCACTCAAGTAT+TGG | 0.471306 | 4_3:+73950103 | Msa0662110:CDS |
| AACAGCTTCAGCAGCAGTAG+TGG | 0.475357 | 4_3:-73948669 | None:intergenic |
| CCTTGTTACTCCTCTATACA+TGG | 0.477522 | 4_3:-73950443 | None:intergenic |
| AGAATCAGAACCAAACCTTT+GGG | 0.481711 | 4_3:+73949391 | Msa0662110:CDS |
| TATTCAAATTGTTTGGCTCA+TGG | 0.483216 | 4_3:-73949002 | None:intergenic |
| GCTGCTGAAGCTGTTCCAAC+AGG | 0.484113 | 4_3:+73948677 | Msa0662110:CDS |
| CCTCAACTATATTTGGTAGC+TGG | 0.484593 | 4_3:-73949167 | None:intergenic |
| ACACAGCTTGATTGTGAGCT+AGG | 0.489113 | 4_3:-73949285 | None:intergenic |
| TAGCTTCTTCACTGCTAAGA+AGG | 0.489640 | 4_3:-73951591 | None:intergenic |
| AATACGTTGCTCATTTAAGA+AGG | 0.490643 | 4_3:+73950308 | Msa0662110:CDS |
| TCCATGTCTTCAAACGTACA+TGG | 0.491556 | 4_3:-73951664 | None:intergenic |
| TCAACGGAAGCAGAATCAAT+AGG | 0.498341 | 4_3:-73949330 | None:intergenic |
| ATAGTTGGAAAATTATCAAA+AGG | 0.505989 | 4_3:+73950252 | Msa0662110:intron |
| GATGAAAAGGAAGCATCAAA+TGG | 0.506107 | 4_3:+73949356 | Msa0662110:CDS |
| ACCATGTACGTTTGAAGACA+TGG | 0.509219 | 4_3:+73951663 | Msa0662110:CDS |
| AAAGAGGGCCAAGCTAGAAA+AGG | 0.510100 | 4_3:+73949750 | Msa0662110:CDS |
| TTTATCAGACATAGGTGGAC+AGG | 0.517511 | 4_3:+73949690 | Msa0662110:intron |
| AACGATAATGTGATCTTAGA+CGG | 0.518135 | 4_3:+73949114 | Msa0662110:CDS |
| CAAAGAACATCTCAATATAG+AGG | 0.525445 | 4_3:+73949414 | Msa0662110:CDS |
| CTTCCGTTGATACGATGAAA+AGG | 0.528267 | 4_3:+73949343 | Msa0662110:CDS |
| TGGAAAATTTATACGAGTGG+AGG | 0.535662 | 4_3:-73950130 | None:intergenic |
| GCCTTGCCCATCATGCATGA+TGG | 0.542542 | 4_3:+73948779 | Msa0662110:CDS |
| AGAGGGGCTTCCATGTATAG+AGG | 0.543527 | 4_3:+73950433 | Msa0662110:CDS |
| GAAGTCATTCCAAAGAGCAT+TGG | 0.544370 | 4_3:-73951859 | None:intergenic |
| TACTGGAAAATTTATACGAG+TGG | 0.545226 | 4_3:-73950133 | None:intergenic |
| TTGAGATGTTCTTTGCCCAA+AGG | 0.546617 | 4_3:-73949406 | None:intergenic |
| TCAGCTACACAAGAGGAAGC+AGG | 0.548680 | 4_3:+73951466 | Msa0662110:intron |
| TGTAAAATCAGGAAAAGTAG+TGG | 0.560031 | 4_3:+73950403 | Msa0662110:intron |
| ATATGATGAAGAAGAAGTAG+AGG | 0.560222 | 4_3:+73951744 | Msa0662110:CDS |
| TTGTGATCCATCATGCATGA+TGG | 0.561120 | 4_3:-73948786 | None:intergenic |
| TAGATATGAAGCTCATCTAT+GGG | 0.566225 | 4_3:+73949713 | Msa0662110:CDS |
| GGTTGATAATAAAAGCCTGT+TGG | 0.572958 | 4_3:-73948692 | None:intergenic |
| GGAAAATTTATACGAGTGGA+GGG | 0.573107 | 4_3:-73950129 | None:intergenic |
| CCATAGTTATGAAGAGGTGT+AGG | 0.575108 | 4_3:-73948713 | None:intergenic |
| TTCTTAGCAGTGAAGAAGCT+AGG | 0.580054 | 4_3:+73951593 | Msa0662110:CDS |
| GCTTCAGCAGCAGTAGTGGA+AGG | 0.581457 | 4_3:-73948665 | None:intergenic |
| GAAGTTCATGGAAAATATTG+AGG | 0.582271 | 4_3:+73948568 | Msa0662110:CDS |
| ACGATAATGTGATCTTAGAC+GGG | 0.584490 | 4_3:+73949115 | Msa0662110:CDS |
| AAAACAGACAGTGGCATCTG+AGG | 0.588309 | 4_3:-73951913 | None:intergenic |
| AAAGTAGTGGATTCTCAAGA+GGG | 0.589213 | 4_3:+73950416 | Msa0662110:CDS |
| ACAAGAGAATACGAGCCTGT+TGG | 0.589238 | 4_3:+73949038 | Msa0662110:CDS |
| TGTGATCCATCATGCATGAT+GGG | 0.592730 | 4_3:-73948785 | None:intergenic |
| GAGCCTGTTGGGGAGTCTGG+CGG | 0.596564 | 4_3:+73949050 | Msa0662110:CDS |
| GGTTATGAAAGTGAACATGT+TGG | 0.604732 | 4_3:+73948746 | Msa0662110:CDS |
| TAATATCCATAGTTATGAAG+AGG | 0.606260 | 4_3:-73948719 | None:intergenic |
| TCTAAGGAGATGGGTATCAA+GGG | 0.607562 | 4_3:+73949203 | Msa0662110:CDS |
| CAAGCTAGAAAAGGAAAGCA+AGG | 0.608427 | 4_3:+73949759 | Msa0662110:CDS |
| CTCAATATAGAGGTGTAACA+AGG | 0.612520 | 4_3:+73949424 | Msa0662110:CDS |
| AAATTATCAAAAGGAACTTG+AGG | 0.613334 | 4_3:+73950261 | Msa0662110:CDS |
| AAAAGTAGTGGATTCTCAAG+AGG | 0.615091 | 4_3:+73950415 | Msa0662110:CDS |
| AAACAAAACTGATTATGCAT+CGG | 0.617589 | 4_3:-73951947 | None:intergenic |
| AAGAGAATACGAGCCTGTTG+GGG | 0.620765 | 4_3:+73949040 | Msa0662110:CDS |
| TGCAAATTAAGGAGATCAGA+CGG | 0.621253 | 4_3:-73952076 | None:intergenic |
| CCAGCTACCAAATATAGTTG+AGG | 0.626449 | 4_3:+73949167 | Msa0662110:CDS |
| GTGTATTTGACACTTGTGCA+TGG | 0.627663 | 4_3:-73949245 | None:intergenic |
| ATTGCTGCTATAAAATTCAG+AGG | 0.637823 | 4_3:+73951502 | Msa0662110:CDS |
| TCCATCATGCATGATGGGCA+AGG | 0.639163 | 4_3:-73948780 | None:intergenic |
| GCAGACACCATCAACATGGA+AGG | 0.640576 | 4_3:+73950556 | Msa0662110:intron |
| CCATGTATAGAGGAGTAACA+AGG | 0.642280 | 4_3:+73950443 | Msa0662110:CDS |
| GACACCATCAACATGGAAGG+TGG | 0.644993 | 4_3:+73950559 | Msa0662110:CDS |
| GTTGGTTTATCAGACATAGG+TGG | 0.647177 | 4_3:+73949685 | Msa0662110:intron |
| CATGATGGATCACAAGCACA+AGG | 0.647359 | 4_3:+73948794 | Msa0662110:CDS |
| ATGGCTGCACTCAAGTATTG+GGG | 0.648728 | 4_3:+73950105 | Msa0662110:CDS |
| AGCTAGGAGAAAATATGACG+TGG | 0.649958 | 4_3:+73951609 | Msa0662110:CDS |
| TGTAGCAGACACCATCAACA+TGG | 0.652346 | 4_3:+73950552 | Msa0662110:intron |
| TGATATAACAAAATATGACG+TGG | 0.656360 | 4_3:+73951546 | Msa0662110:CDS |
| TGATTGTGAGCTAGGACTCG+CGG | 0.676952 | 4_3:-73949277 | None:intergenic |
| AAGTAGTGGATTCTCAAGAG+GGG | 0.719782 | 4_3:+73950417 | Msa0662110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGAATATAACAAATAT+TGG | - | chr4_3:73948831-73948850 | None:intergenic | 10.0% |
| !!! | TTTTAACTAATAAAATACAA+TGG | + | chr4_3:73950948-73950967 | Msa0662110:intron | 10.0% |
| !! | AATAAAAGAAAATATTAAAG+TGG | - | chr4_3:73951318-73951337 | None:intergenic | 10.0% |
| !!! | AATCAAAATAGTAACATTTT+TGG | + | chr4_3:73948608-73948627 | Msa0662110:CDS | 15.0% |
| !!! | CTATATATGATTTTAAATTG+CGG | + | chr4_3:73949504-73949523 | Msa0662110:intron | 15.0% |
| !!! | CAAATTTTTTCACAATATAA+AGG | - | chr4_3:73949548-73949567 | None:intergenic | 15.0% |
| !!! | GATTTTACAAAGTTAAATTA+TGG | - | chr4_3:73950392-73950411 | None:intergenic | 15.0% |
| !!! | TAATTTAACTTTGTAAAATC+AGG | + | chr4_3:73950392-73950411 | Msa0662110:intron | 15.0% |
| !! | ATATCATTTCTCAAATATAT+TGG | - | chr4_3:73950689-73950708 | None:intergenic | 15.0% |
| !!! | TATTTGAGAAATGATATTTT+TGG | + | chr4_3:73950692-73950711 | Msa0662110:intron | 15.0% |
| !!! | TAAGTTTTTTTTGTACAAAT+GGG | - | chr4_3:73951021-73951040 | None:intergenic | 15.0% |
| !!! | TTAAGTTTTTTTTGTACAAA+TGG | - | chr4_3:73951022-73951041 | None:intergenic | 15.0% |
| !!! | TTTTCTTTTATTAAAGATGT+TGG | + | chr4_3:73951326-73951345 | Msa0662110:intron | 15.0% |
| !!! | AAAAGTTTTCATAACAAAAA+GGG | - | chr4_3:73951447-73951466 | None:intergenic | 15.0% |
| !!! | TATATGTTATTTATTGAGAA+TGG | - | chr4_3:73951727-73951746 | None:intergenic | 15.0% |
| !!! | TGTTACTATTTTGATTGTTT+AGG | - | chr4_3:73948604-73948623 | None:intergenic | 20.0% |
| !!! | TTTAGGTTATTCAAATTGTT+TGG | - | chr4_3:73949012-73949031 | None:intergenic | 20.0% |
| !!! | ACTTTTAATAATGTGACAAA+AGG | - | chr4_3:73949467-73949486 | None:intergenic | 20.0% |
| !! | AAAATATACACACATAAAAG+AGG | - | chr4_3:73949809-73949828 | None:intergenic | 20.0% |
| !!! | CTTTTATGTGTGTATATTTT+TGG | + | chr4_3:73949809-73949828 | Msa0662110:intron | 20.0% |
| !! | ACAAAAACATTCTTAACATT+TGG | - | chr4_3:73949977-73949996 | None:intergenic | 20.0% |
| !! | ATCTCATGATAATATATAGT+TGG | + | chr4_3:73950237-73950256 | Msa0662110:intron | 20.0% |
| !! | ATAGTTGGAAAATTATCAAA+AGG | + | chr4_3:73950252-73950271 | Msa0662110:intron | 20.0% |
| !!! | TGGTTTTGTATATTAACATA+TGG | - | chr4_3:73950372-73950391 | None:intergenic | 20.0% |
| !! | GTTTATAAACCATTTAACAT+TGG | - | chr4_3:73950842-73950861 | None:intergenic | 20.0% |
| !! | AAATGTACATTCAATATAAG+AGG | - | chr4_3:73951167-73951186 | None:intergenic | 20.0% |
| !! | TTATAATAATACTTAGGAAG+AGG | + | chr4_3:73951198-73951217 | Msa0662110:intron | 20.0% |
| !! | TATAATAATACTTAGGAAGA+GGG | + | chr4_3:73951199-73951218 | Msa0662110:intron | 20.0% |
| !!! | GAAAAGTTTTCATAACAAAA+AGG | - | chr4_3:73951448-73951467 | None:intergenic | 20.0% |
| !! | CTAAAAATGAATGCAAATTA+AGG | - | chr4_3:73952090-73952109 | None:intergenic | 20.0% |
| !!! | ATTTTGATTGTTTAGGCTAA+AGG | - | chr4_3:73948597-73948616 | None:intergenic | 25.0% |
| ! | TTCTCTTCACAAATGAATAT+AGG | + | chr4_3:73948638-73948657 | Msa0662110:CDS | 25.0% |
| ! | TAATATCCATAGTTATGAAG+AGG | - | chr4_3:73948722-73948741 | None:intergenic | 25.0% |
| ! | CATAACTATGGATATTACTA+TGG | + | chr4_3:73948725-73948744 | Msa0662110:CDS | 25.0% |
| ! | TAACTATTTATGTGTAGCAA+TGG | + | chr4_3:73948900-73948919 | Msa0662110:intron | 25.0% |
| ! | AACTATTTATGTGTAGCAAT+GGG | + | chr4_3:73948901-73948920 | Msa0662110:intron | 25.0% |
| ! | TATTCTCTTGTACATGATTT+AGG | - | chr4_3:73949029-73949048 | None:intergenic | 25.0% |
| ! | ATTTCATCCTCAACTATATT+TGG | - | chr4_3:73949177-73949196 | None:intergenic | 25.0% |
| !! | AGGATGAAATTTTTGATCTA+AGG | + | chr4_3:73949187-73949206 | Msa0662110:CDS | 25.0% |
| !! | AAATTTTTGATCTAAGGAGA+TGG | + | chr4_3:73949193-73949212 | Msa0662110:CDS | 25.0% |
| !! | AATTTTTGATCTAAGGAGAT+GGG | + | chr4_3:73949194-73949213 | Msa0662110:CDS | 25.0% |
| !! | CTGCAATATAAAGGATTTTA+AGG | - | chr4_3:73949605-73949624 | None:intergenic | 25.0% |
| ! | AATTGTAGTCTGCAATATAA+AGG | - | chr4_3:73949614-73949633 | None:intergenic | 25.0% |
| !! | AACTCCAAGAATTTTATTGT+AGG | + | chr4_3:73950042-73950061 | Msa0662110:intron | 25.0% |
| ! | GCAAAGAATTTAATCATTAC+TGG | - | chr4_3:73950153-73950172 | None:intergenic | 25.0% |
| ! | AAATTATCAAAAGGAACTTG+AGG | + | chr4_3:73950261-73950280 | Msa0662110:CDS | 25.0% |
| ! | AAAATGTGTCAAATACACAA+GGG | - | chr4_3:73950932-73950951 | None:intergenic | 25.0% |
| ! | TAAAATGTGTCAAATACACA+AGG | - | chr4_3:73950933-73950952 | None:intergenic | 25.0% |
| ! | ACTTGAAAAGATTAGATTGA+TGG | + | chr4_3:73951135-73951154 | Msa0662110:intron | 25.0% |
| ! | TGATATAACAAAATATGACG+TGG | + | chr4_3:73951546-73951565 | Msa0662110:CDS | 25.0% |
| ! | AAACAAAACTGATTATGCAT+CGG | - | chr4_3:73951950-73951969 | None:intergenic | 25.0% |
| !!! | ATAATCAGTTTTGTTTCGTT+CGG | + | chr4_3:73951954-73951973 | Msa0662110:exon | 25.0% |
| GAAGTTCATGGAAAATATTG+AGG | + | chr4_3:73948568-73948587 | Msa0662110:CDS | 30.0% | |
| ! | TATTCAAATTGTTTGGCTCA+TGG | - | chr4_3:73949005-73949024 | None:intergenic | 30.0% |
| CACATTATCGTTTCTTAAGA+CGG | - | chr4_3:73949106-73949125 | None:intergenic | 30.0% | |
| AACGATAATGTGATCTTAGA+CGG | + | chr4_3:73949114-73949133 | Msa0662110:CDS | 30.0% | |
| !! | TCTTCTAGCTGATATTTTGT+CGG | - | chr4_3:73949141-73949160 | None:intergenic | 30.0% |
| CAAAGAACATCTCAATATAG+AGG | + | chr4_3:73949414-73949433 | Msa0662110:CDS | 30.0% | |
| GCTTGATTTATAACGAATGT+TGG | + | chr4_3:73949667-73949686 | Msa0662110:intron | 30.0% | |
| !! | AATGTTGGTTTATCAGACAT+AGG | + | chr4_3:73949682-73949701 | Msa0662110:intron | 30.0% |
| TAGATATGAAGCTCATCTAT+GGG | + | chr4_3:73949713-73949732 | Msa0662110:CDS | 30.0% | |
| GATAACAGCTGTAAAAAAGA+GGG | + | chr4_3:73949735-73949754 | Msa0662110:CDS | 30.0% | |
| ! | CAAAATGCACAGCTTTTATA+AGG | - | chr4_3:73949867-73949886 | None:intergenic | 30.0% |
| AATGATTCCTCAGTTTATCT+AGG | + | chr4_3:73949943-73949962 | Msa0662110:intron | 30.0% | |
| AATCTTACCTAGATAAACTG+AGG | - | chr4_3:73949953-73949972 | None:intergenic | 30.0% | |
| ! | CCTCTTTTTCTATCATCATA+AGG | - | chr4_3:73950003-73950022 | None:intergenic | 30.0% |
| CCTTATGATGATAGAAAAAG+AGG | + | chr4_3:73950000-73950019 | Msa0662110:intron | 30.0% | |
| ! | TCCAAGAATTTTATTGTAGG+AGG | + | chr4_3:73950045-73950064 | Msa0662110:intron | 30.0% |
| ACCTCCTACAATAAAATTCT+TGG | - | chr4_3:73950049-73950068 | None:intergenic | 30.0% | |
| TACTGGAAAATTTATACGAG+TGG | - | chr4_3:73950136-73950155 | None:intergenic | 30.0% | |
| TCCTTGAATTGAAGACAAAA+TGG | - | chr4_3:73950175-73950194 | None:intergenic | 30.0% | |
| AATACGTTGCTCATTTAAGA+AGG | + | chr4_3:73950308-73950327 | Msa0662110:CDS | 30.0% | |
| TGTAAAATCAGGAAAAGTAG+TGG | + | chr4_3:73950403-73950422 | Msa0662110:intron | 30.0% | |
| GGAAATAAAGATCTCTATCT+TGG | + | chr4_3:73950606-73950625 | Msa0662110:CDS | 30.0% | |
| !!! | GAGTATACTCTCACATTTTT+TGG | + | chr4_3:73950639-73950658 | Msa0662110:intron | 30.0% |
| ATACGCATTCCAATGTTAAA+TGG | + | chr4_3:73950830-73950849 | Msa0662110:intron | 30.0% | |
| ! | TTTTATAGCAGCAATGTCAT+AGG | - | chr4_3:73951497-73951516 | None:intergenic | 30.0% |
| ATTGCTGCTATAAAATTCAG+AGG | + | chr4_3:73951502-73951521 | Msa0662110:CDS | 30.0% | |
| AAAATATGACGTGGAGAAAA+TGG | + | chr4_3:73951555-73951574 | Msa0662110:CDS | 30.0% | |
| ATATGATGAAGAAGAAGTAG+AGG | + | chr4_3:73951744-73951763 | Msa0662110:CDS | 30.0% | |
| AAACTTGTCACAATTGAAGA+AGG | - | chr4_3:73951796-73951815 | None:intergenic | 30.0% | |
| !! | GGTTGATAATAAAAGCCTGT+TGG | - | chr4_3:73948695-73948714 | None:intergenic | 35.0% |
| GGTTATGAAAGTGAACATGT+TGG | + | chr4_3:73948746-73948765 | Msa0662110:CDS | 35.0% | |
| GCTTACTTGCATTTCTTCTT+TGG | - | chr4_3:73948950-73948969 | None:intergenic | 35.0% | |
| ACGATAATGTGATCTTAGAC+GGG | + | chr4_3:73949115-73949134 | Msa0662110:CDS | 35.0% | |
| ! | CTTCCTTTTCATCGTATCAA+CGG | - | chr4_3:73949349-73949368 | None:intergenic | 35.0% |
| !! | GATGAAAAGGAAGCATCAAA+TGG | + | chr4_3:73949356-73949375 | Msa0662110:CDS | 35.0% |
| AAGAATCAGAACCAAACCTT+TGG | + | chr4_3:73949390-73949409 | Msa0662110:CDS | 35.0% | |
| AGAATCAGAACCAAACCTTT+GGG | + | chr4_3:73949391-73949410 | Msa0662110:CDS | 35.0% | |
| ! | CTCAATATAGAGGTGTAACA+AGG | + | chr4_3:73949424-73949443 | Msa0662110:CDS | 35.0% |
| CAAGCAACAAAAAACACGAA+AGG | - | chr4_3:73949652-73949671 | None:intergenic | 35.0% | |
| GTAGATATGAAGCTCATCTA+TGG | + | chr4_3:73949712-73949731 | Msa0662110:CDS | 35.0% | |
| GGATAACAGCTGTAAAAAAG+AGG | + | chr4_3:73949734-73949753 | Msa0662110:CDS | 35.0% | |
| GGAAAATTTATACGAGTGGA+GGG | - | chr4_3:73950132-73950151 | None:intergenic | 35.0% | |
| TGGAAAATTTATACGAGTGG+AGG | - | chr4_3:73950133-73950152 | None:intergenic | 35.0% | |
| !! | GCCATTTTGTCTTCAATTCA+AGG | + | chr4_3:73950171-73950190 | Msa0662110:intron | 35.0% |
| !! | AAAAGTAGTGGATTCTCAAG+AGG | + | chr4_3:73950415-73950434 | Msa0662110:CDS | 35.0% |
| !! | AAAGTAGTGGATTCTCAAGA+GGG | + | chr4_3:73950416-73950435 | Msa0662110:CDS | 35.0% |
| ! | CTCTTCTTTTCAGTCACATA+AGG | + | chr4_3:73951275-73951294 | Msa0662110:intron | 35.0% |
| !! | ATTAAAGATGTTGGCTCAGA+AGG | + | chr4_3:73951335-73951354 | Msa0662110:intron | 35.0% |
| ! | AAACTTTTCAGCTACACAAG+AGG | + | chr4_3:73951459-73951478 | Msa0662110:intron | 35.0% |
| ! | ATTTTGCATCTTTTCTGCAC+TGG | - | chr4_3:73951700-73951719 | None:intergenic | 35.0% |
| ! | GTAAGCTTGTCATGTTTTCA+GGG | - | chr4_3:73951840-73951859 | None:intergenic | 35.0% |
| !!! | AGTTTTGTTTCGTTCGGAAT+TGG | + | chr4_3:73951960-73951979 | Msa0662110:three_prime_UTR | 35.0% |
| TGCAAATTAAGGAGATCAGA+CGG | - | chr4_3:73952079-73952098 | None:intergenic | 35.0% | |
| ! | CCATAGTTATGAAGAGGTGT+AGG | - | chr4_3:73948716-73948735 | None:intergenic | 40.0% |
| CCTACACCTCTTCATAACTA+TGG | + | chr4_3:73948713-73948732 | Msa0662110:CDS | 40.0% | |
| TGTGATCCATCATGCATGAT+GGG | - | chr4_3:73948788-73948807 | None:intergenic | 40.0% | |
| TTGTGATCCATCATGCATGA+TGG | - | chr4_3:73948789-73948808 | None:intergenic | 40.0% | |
| GCAATGGGAATCTCTCATTA+TGG | + | chr4_3:73948916-73948935 | Msa0662110:intron | 40.0% | |
| TTGGCTCATGGTATGAAGTT+TGG | - | chr4_3:73948993-73949012 | None:intergenic | 40.0% | |
| ! | AACATGAGAGTTGTTGCTTC+TGG | - | chr4_3:73949080-73949099 | None:intergenic | 40.0% |
| ! | CCTCAACTATATTTGGTAGC+TGG | - | chr4_3:73949170-73949189 | None:intergenic | 40.0% |
| CCAGCTACCAAATATAGTTG+AGG | + | chr4_3:73949167-73949186 | Msa0662110:CDS | 40.0% | |
| ATCTAAGGAGATGGGTATCA+AGG | + | chr4_3:73949202-73949221 | Msa0662110:CDS | 40.0% | |
| TCTAAGGAGATGGGTATCAA+GGG | + | chr4_3:73949203-73949222 | Msa0662110:CDS | 40.0% | |
| GTGTATTTGACACTTGTGCA+TGG | - | chr4_3:73949248-73949267 | None:intergenic | 40.0% | |
| TCAACGGAAGCAGAATCAAT+AGG | - | chr4_3:73949333-73949352 | None:intergenic | 40.0% | |
| CTTCCGTTGATACGATGAAA+AGG | + | chr4_3:73949343-73949362 | Msa0662110:CDS | 40.0% | |
| ATGTTCTTTGCCCAAAGGTT+TGG | - | chr4_3:73949404-73949423 | None:intergenic | 40.0% | |
| TTGAGATGTTCTTTGCCCAA+AGG | - | chr4_3:73949409-73949428 | None:intergenic | 40.0% | |
| ! | GTTGGTTTATCAGACATAGG+TGG | + | chr4_3:73949685-73949704 | Msa0662110:intron | 40.0% |
| TTTATCAGACATAGGTGGAC+AGG | + | chr4_3:73949690-73949709 | Msa0662110:intron | 40.0% | |
| !!! | CTTGCTTTCCTTTTCTAGCT+TGG | - | chr4_3:73949761-73949780 | None:intergenic | 40.0% |
| CAAGCTAGAAAAGGAAAGCA+AGG | + | chr4_3:73949759-73949778 | Msa0662110:CDS | 40.0% | |
| AGCTGCAAGAGCTTATGATA+TGG | + | chr4_3:73950086-73950105 | Msa0662110:CDS | 40.0% | |
| ATATGGCTGCACTCAAGTAT+TGG | + | chr4_3:73950103-73950122 | Msa0662110:CDS | 40.0% | |
| TATGGCTGCACTCAAGTATT+GGG | + | chr4_3:73950104-73950123 | Msa0662110:CDS | 40.0% | |
| !! | AAGTAGTGGATTCTCAAGAG+GGG | + | chr4_3:73950417-73950436 | Msa0662110:CDS | 40.0% |
| CCTTGTTACTCCTCTATACA+TGG | - | chr4_3:73950446-73950465 | None:intergenic | 40.0% | |
| CCATGTATAGAGGAGTAACA+AGG | + | chr4_3:73950443-73950462 | Msa0662110:CDS | 40.0% | |
| CTTCACTGCTAAGAAGGTTA+GGG | - | chr4_3:73951588-73951607 | None:intergenic | 40.0% | |
| TCTTCACTGCTAAGAAGGTT+AGG | - | chr4_3:73951589-73951608 | None:intergenic | 40.0% | |
| TAGCTTCTTCACTGCTAAGA+AGG | - | chr4_3:73951594-73951613 | None:intergenic | 40.0% | |
| TTCTTAGCAGTGAAGAAGCT+AGG | + | chr4_3:73951593-73951612 | Msa0662110:CDS | 40.0% | |
| AGCTAGGAGAAAATATGACG+TGG | + | chr4_3:73951609-73951628 | Msa0662110:CDS | 40.0% | |
| ACCATGTACGTTTGAAGACA+TGG | + | chr4_3:73951663-73951682 | Msa0662110:CDS | 40.0% | |
| TCCATGTCTTCAAACGTACA+TGG | - | chr4_3:73951667-73951686 | None:intergenic | 40.0% | |
| ! | GGTAAGCTTGTCATGTTTTC+AGG | - | chr4_3:73951841-73951860 | None:intergenic | 40.0% |
| ACAAGCTTACCAATGCTCTT+TGG | + | chr4_3:73951850-73951869 | Msa0662110:CDS | 40.0% | |
| ! | GAAGTCATTCCAAAGAGCAT+TGG | - | chr4_3:73951862-73951881 | None:intergenic | 40.0% |
| GTTTCGTTCGGAATTGGATT+AGG | + | chr4_3:73951966-73951985 | Msa0662110:three_prime_UTR | 40.0% | |
| !! | CATGATGGATCACAAGCACA+AGG | + | chr4_3:73948794-73948813 | Msa0662110:CDS | 45.0% |
| ATGGATCACAAGCACAAGGT+TGG | + | chr4_3:73948798-73948817 | Msa0662110:intron | 45.0% | |
| ACAAGAGAATACGAGCCTGT+TGG | + | chr4_3:73949038-73949057 | Msa0662110:CDS | 45.0% | |
| CAAGAGAATACGAGCCTGTT+GGG | + | chr4_3:73949039-73949058 | Msa0662110:CDS | 45.0% | |
| AAGAGAATACGAGCCTGTTG+GGG | + | chr4_3:73949040-73949059 | Msa0662110:CDS | 45.0% | |
| ACACAGCTTGATTGTGAGCT+AGG | - | chr4_3:73949288-73949307 | None:intergenic | 45.0% | |
| AAAGAGGGCCAAGCTAGAAA+AGG | + | chr4_3:73949750-73949769 | Msa0662110:CDS | 45.0% | |
| CTGAGGAATCATTGTGCATG+TGG | - | chr4_3:73949936-73949955 | None:intergenic | 45.0% | |
| ! | ATGGCTGCACTCAAGTATTG+GGG | + | chr4_3:73950105-73950124 | Msa0662110:CDS | 45.0% |
| TGTAGCAGACACCATCAACA+TGG | + | chr4_3:73950552-73950571 | Msa0662110:intron | 45.0% | |
| !! | AAAGATGTTGGCTCAGAAGG+AGG | + | chr4_3:73951338-73951357 | Msa0662110:intron | 45.0% |
| AAAACAGACAGTGGCATCTG+AGG | - | chr4_3:73951916-73951935 | None:intergenic | 45.0% | |
| !! | TTATATATGAAAAATAAAAT+TGG | + | chr4_3:73950513-73950532 | Msa0662110:intron | 5.0% |
| !! | TTATAATTATAATAATACTT+AGG | + | chr4_3:73951192-73951211 | Msa0662110:intron | 5.0% |
| AACAGCTTCAGCAGCAGTAG+TGG | - | chr4_3:73948672-73948691 | None:intergenic | 50.0% | |
| !! | TCCATCATGCATGATGGGCA+AGG | - | chr4_3:73948783-73948802 | None:intergenic | 50.0% |
| TGATTGTGAGCTAGGACTCG+CGG | - | chr4_3:73949280-73949299 | None:intergenic | 50.0% | |
| AGAGGGGCTTCCATGTATAG+AGG | + | chr4_3:73950433-73950452 | Msa0662110:CDS | 50.0% | |
| GCAGACACCATCAACATGGA+AGG | + | chr4_3:73950556-73950575 | Msa0662110:intron | 50.0% | |
| GACACCATCAACATGGAAGG+TGG | + | chr4_3:73950559-73950578 | Msa0662110:CDS | 50.0% | |
| CTTGCCACCTTCCATGTTGA+TGG | - | chr4_3:73950566-73950585 | None:intergenic | 50.0% | |
| GAAGGTGGCAAGCTCGAATA+GGG | + | chr4_3:73950574-73950593 | Msa0662110:CDS | 50.0% | |
| TCAGCTACACAAGAGGAAGC+AGG | + | chr4_3:73951466-73951485 | Msa0662110:intron | 50.0% | |
| CACGCAGCAAAAACAGACAG+TGG | - | chr4_3:73951925-73951944 | None:intergenic | 50.0% | |
| !!! | CACTGTCTGTTTTTGCTGCG+TGG | + | chr4_3:73951923-73951942 | Msa0662110:CDS | 50.0% |
| ! | GCTTCAGCAGCAGTAGTGGA+AGG | - | chr4_3:73948668-73948687 | None:intergenic | 55.0% |
| GCTGCTGAAGCTGTTCCAAC+AGG | + | chr4_3:73948677-73948696 | Msa0662110:CDS | 55.0% | |
| GCCTTGCCCATCATGCATGA+TGG | + | chr4_3:73948779-73948798 | Msa0662110:CDS | 55.0% | |
| GGAAGGTGGCAAGCTCGAAT+AGG | + | chr4_3:73950573-73950592 | Msa0662110:CDS | 55.0% | |
| GCTCGAATAGGGAGAGTTGC+TGG | + | chr4_3:73950585-73950604 | Msa0662110:CDS | 55.0% | |
| TACGAGCCTGTTGGGGAGTC+TGG | + | chr4_3:73949047-73949066 | Msa0662110:CDS | 60.0% | |
| GAGCCTGTTGGGGAGTCTGG+CGG | + | chr4_3:73949050-73949069 | Msa0662110:CDS | 65.0% | |
| GCTCCGCCAGACTCCCCAAC+AGG | - | chr4_3:73949056-73949075 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 73948566 | 73952110 | 73948566 | ID=Msa0662110;Name=Msa0662110 |
| chr4_3 | mRNA | 73948566 | 73952110 | 73948566 | ID=Msa0662110-mRNA-1;Parent=Msa0662110;Name=Msa0662110-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.71|0.62|1|1|1|8|153|547 |
| chr4_3 | exon | 73948566 | 73948815 | 73948566 | ID=Msa0662110-mRNA-1:exon:22276;Parent=Msa0662110-mRNA-1 |
| chr4_3 | exon | 73948917 | 73949445 | 73948917 | ID=Msa0662110-mRNA-1:exon:22277;Parent=Msa0662110-mRNA-1 |
| chr4_3 | exon | 73949698 | 73949780 | 73949698 | ID=Msa0662110-mRNA-1:exon:22278;Parent=Msa0662110-mRNA-1 |
| chr4_3 | exon | 73950064 | 73950152 | 73950064 | ID=Msa0662110-mRNA-1:exon:22279;Parent=Msa0662110-mRNA-1 |
| chr4_3 | exon | 73950256 | 73950329 | 73950256 | ID=Msa0662110-mRNA-1:exon:22280;Parent=Msa0662110-mRNA-1 |
| chr4_3 | exon | 73950414 | 73950464 | 73950414 | ID=Msa0662110-mRNA-1:exon:22281;Parent=Msa0662110-mRNA-1 |
| chr4_3 | exon | 73950557 | 73950636 | 73950557 | ID=Msa0662110-mRNA-1:exon:22282;Parent=Msa0662110-mRNA-1 |
| chr4_3 | exon | 73951470 | 73952110 | 73951470 | ID=Msa0662110-mRNA-1:exon:22283;Parent=Msa0662110-mRNA-1 |
| chr4_3 | CDS | 73948566 | 73948815 | 73948566 | ID=Msa0662110-mRNA-1:cds;Parent=Msa0662110-mRNA-1 |
| chr4_3 | CDS | 73948917 | 73949445 | 73948917 | ID=Msa0662110-mRNA-1:cds;Parent=Msa0662110-mRNA-1 |
| chr4_3 | CDS | 73949698 | 73949780 | 73949698 | ID=Msa0662110-mRNA-1:cds;Parent=Msa0662110-mRNA-1 |
| chr4_3 | CDS | 73950064 | 73950152 | 73950064 | ID=Msa0662110-mRNA-1:cds;Parent=Msa0662110-mRNA-1 |
| chr4_3 | CDS | 73950256 | 73950329 | 73950256 | ID=Msa0662110-mRNA-1:cds;Parent=Msa0662110-mRNA-1 |
| chr4_3 | CDS | 73950414 | 73950464 | 73950414 | ID=Msa0662110-mRNA-1:cds;Parent=Msa0662110-mRNA-1 |
| chr4_3 | CDS | 73950557 | 73950636 | 73950557 | ID=Msa0662110-mRNA-1:cds;Parent=Msa0662110-mRNA-1 |
| chr4_3 | CDS | 73951470 | 73951957 | 73951470 | ID=Msa0662110-mRNA-1:cds;Parent=Msa0662110-mRNA-1 |
| chr4_3 | three_prime_UTR | 73951958 | 73952110 | 73951958 | ID=Msa0662110-mRNA-1:three_prime_utr;Parent=Msa0662110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
