Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0753550 | XP_024639524.1 | 94.821 | 502 | 24 | 2 | 1 | 500 | 1 | 502 | 0.0 | 975 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0753550 | sp|F4I2H7|TPX2_ARATH | 35.690 | 297 | 136 | 11 | 186 | 430 | 217 | 510 | 5.48e-34 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0753550 | A0A396HK57 | 94.821 | 502 | 24 | 2 | 1 | 500 | 1 | 502 | 0.0 | 975 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027800 | Msa0753550 | 0.800714 | 1.265884e-48 | -8.615850e-47 |
| Msa0032980 | Msa0753550 | 0.815837 | 7.534818e-52 | -8.615850e-47 |
| Msa0091350 | Msa0753550 | 0.827454 | 1.550933e-54 | -8.615850e-47 |
| Msa0106630 | Msa0753550 | 0.810671 | 1.026639e-50 | -8.615850e-47 |
| Msa0648760 | Msa0753550 | 0.807250 | 5.540012e-50 | -8.615850e-47 |
| Msa0717900 | Msa0753550 | 0.803307 | 3.711196e-49 | -8.615850e-47 |
| Msa0753550 | Msa0807160 | 0.905553 | 3.803003e-80 | -8.615850e-47 |
| Msa0753550 | Msa0833140 | 0.962434 | 7.132997e-121 | -8.615850e-47 |
| Msa0753550 | Msa1078860 | 0.803654 | 3.144256e-49 | -8.615850e-47 |
| Msa0753550 | Msa1169690 | 0.806378 | 8.468688e-50 | -8.615850e-47 |
| Msa0753550 | Msa1213830 | 0.810488 | 1.124137e-50 | -8.615850e-47 |
| Msa0753550 | Msa1294460 | 0.801582 | 8.414160e-49 | -8.615850e-47 |
| Msa0753550 | Msa1294790 | 0.804654 | 1.947110e-49 | -8.615850e-47 |
| Msa0753550 | Msa1300460 | 0.801796 | 7.604153e-49 | -8.615850e-47 |
| Msa0127340 | Msa0753550 | 0.830629 | 2.637629e-55 | -8.615850e-47 |
| Msa0153210 | Msa0753550 | 0.804612 | 1.987044e-49 | -8.615850e-47 |
| Msa0170070 | Msa0753550 | 0.813436 | 2.562581e-51 | -8.615850e-47 |
| Msa0412130 | Msa0753550 | 0.800481 | 1.412205e-48 | -8.615850e-47 |
| Msa0421750 | Msa0753550 | 0.819311 | 1.241750e-52 | -8.615850e-47 |
| Msa0429970 | Msa0753550 | 0.809219 | 2.108292e-50 | -8.615850e-47 |
| Msa0461550 | Msa0753550 | 0.803877 | 2.826417e-49 | -8.615850e-47 |
| Msa0466520 | Msa0753550 | 0.804583 | 2.014748e-49 | -8.615850e-47 |
| Msa0563900 | Msa0753550 | 0.806190 | 9.275878e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0753550 | MtrunA17_Chr5g0398421 | 94.821 | 502 | 24 | 2 | 1 | 500 | 1 | 502 | 0.0 | 975 |
| Msa0753550 | MtrunA17_Chr4g0056701 | 49.378 | 482 | 200 | 11 | 21 | 500 | 19 | 458 | 2.23e-139 | 409 |
| Msa0753550 | MtrunA17_Chr4g0040361 | 30.273 | 512 | 242 | 19 | 28 | 436 | 16 | 515 | 4.15e-36 | 142 |
| Msa0753550 | MtrunA17_Chr6g0475641 | 35.531 | 273 | 138 | 8 | 21 | 287 | 16 | 256 | 2.14e-33 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0753550 | AT4G22860.1 | 43.870 | 522 | 238 | 14 | 15 | 500 | 7 | 509 | 7.54e-117 | 353 |
| Msa0753550 | AT4G11990.1 | 42.769 | 484 | 234 | 13 | 15 | 477 | 15 | 476 | 1.27e-99 | 309 |
| Msa0753550 | AT4G22860.2 | 50.970 | 361 | 151 | 9 | 149 | 500 | 158 | 501 | 1.90e-98 | 306 |
| Msa0753550 | AT4G22860.3 | 42.286 | 350 | 165 | 8 | 15 | 336 | 7 | 347 | 2.17e-73 | 237 |
| Msa0753550 | AT1G03780.2 | 35.690 | 297 | 136 | 11 | 186 | 430 | 217 | 510 | 3.72e-35 | 140 |
| Msa0753550 | AT1G03780.3 | 35.690 | 297 | 136 | 11 | 186 | 430 | 217 | 510 | 5.57e-35 | 139 |
| Msa0753550 | AT5G07170.1 | 31.172 | 401 | 205 | 17 | 11 | 402 | 18 | 356 | 7.53e-35 | 134 |
| Msa0753550 | AT5G07170.2 | 34.234 | 333 | 156 | 15 | 11 | 334 | 18 | 296 | 5.74e-34 | 132 |
| Msa0753550 | AT5G62240.1 | 30.408 | 319 | 175 | 9 | 23 | 336 | 15 | 291 | 4.86e-22 | 98.2 |
| Msa0753550 | AT1G03780.1 | 30.822 | 292 | 126 | 12 | 186 | 425 | 217 | 484 | 9.19e-22 | 99.4 |
Find 130 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCAATTGTTCTGCTGTTAA+AGG | 0.182738 | 5_2:-7192796 | None:intergenic |
| TATTGGCCGTGCTTTGAATT+TGG | 0.191392 | 5_2:-7194185 | None:intergenic |
| ATTAGGATTCATACCTTCTT+AGG | 0.212980 | 5_2:-7193552 | None:intergenic |
| CAAGAGCTTACTTGAAATTC+AGG | 0.216104 | 5_2:-7194362 | None:intergenic |
| CTGATTACCTTCTTATTAAA+TGG | 0.255685 | 5_2:-7195075 | None:intergenic |
| ACCTAGTCCTTTGTGCTCTA+TGG | 0.273421 | 5_2:-7194030 | None:intergenic |
| TTCACTCGCATTCACGGAAT+TGG | 0.278574 | 5_2:-7192130 | None:intergenic |
| ATTGGCCGTGCTTTGAATTT+GGG | 0.284854 | 5_2:-7194184 | None:intergenic |
| TTGACTGGGCTCCAGATGTT+AGG | 0.287195 | 5_2:-7196084 | None:intergenic |
| AAGAGTTGTTGGGCACTATT+AGG | 0.297396 | 5_2:-7196699 | None:intergenic |
| TCATACAAAATTACTTTGTT+AGG | 0.303556 | 5_2:+7196749 | Msa0753550:three_prime_UTR |
| GGACCTGAGTTCCACTTTCT+AGG | 0.305933 | 5_2:-7196824 | None:intergenic |
| AACACCAATATCTCCTTTAC+TGG | 0.322420 | 5_2:-7195714 | None:intergenic |
| CACTCTAGGAAGCGTAATCT+TGG | 0.333654 | 5_2:-7193990 | None:intergenic |
| CTTTCCAGTAAAGGAGATAT+TGG | 0.359519 | 5_2:+7195710 | Msa0753550:CDS |
| CATGGGAAATTCCTTTCATC+TGG | 0.361861 | 5_2:+7196260 | Msa0753550:CDS |
| GGTACAACAAGCGCATAAAA+AGG | 0.363755 | 5_2:+7193214 | Msa0753550:CDS |
| GATTAGTGTAGCTAACTCTT+TGG | 0.366736 | 5_2:+7193238 | Msa0753550:CDS |
| ACCTTTAACAGCAGAACAAT+TGG | 0.388644 | 5_2:+7192795 | Msa0753550:CDS |
| GCGGTTTCGAACCAGCGTTC+AGG | 0.397286 | 5_2:-7191788 | None:intergenic |
| GCTTCAGGAACCTGGGAATT+CGG | 0.408413 | 5_2:+7196571 | Msa0753550:intron |
| TCCTCATTTCAGAGTGTTCA+AGG | 0.409665 | 5_2:+7196132 | Msa0753550:CDS |
| CCCCTCAAATTGTTGGTTCA+AGG | 0.418407 | 5_2:+7192913 | Msa0753550:CDS |
| GTCAGTTGGCTAAGCAAAAT+CGG | 0.418493 | 5_2:+7192889 | Msa0753550:CDS |
| CCAGTCAAATAGTGGTTCTA+AGG | 0.420256 | 5_2:+7196099 | Msa0753550:CDS |
| TTCCTTTCATCTGGACCAAA+AGG | 0.420779 | 5_2:+7196269 | Msa0753550:CDS |
| ACCTTACTAAAGAGGTCAAT+TGG | 0.421892 | 5_2:-7195905 | None:intergenic |
| CCTTAGAACCACTATTTGAC+TGG | 0.423593 | 5_2:-7196099 | None:intergenic |
| CATCATTACCTCTTCATAAG+AGG | 0.434508 | 5_2:+7194324 | Msa0753550:CDS |
| TACCAAGCGGCAGAAATTAG+AGG | 0.441976 | 5_2:+7193277 | Msa0753550:CDS |
| AATAATCTAAGAAGAGTTGT+TGG | 0.446232 | 5_2:-7196710 | None:intergenic |
| CACCTTGAACCAACAATTTG+AGG | 0.450794 | 5_2:-7192915 | None:intergenic |
| ACTGAAATGCTTCAGGAACC+TGG | 0.454412 | 5_2:+7196563 | Msa0753550:intron |
| TAATCCAATCCATCATGCTT+TGG | 0.455156 | 5_2:-7195030 | None:intergenic |
| ACCAATTGACCTCTTTAGTA+AGG | 0.458480 | 5_2:+7195904 | Msa0753550:CDS |
| TCGAACCAGCGTTCAGGTTG+TGG | 0.460088 | 5_2:-7191782 | None:intergenic |
| CTATGGAATGTTTCTAGCTC+GGG | 0.461630 | 5_2:-7194013 | None:intergenic |
| TGTCCACAAGGCACCTAAGA+AGG | 0.462403 | 5_2:+7193539 | Msa0753550:CDS |
| ACCCTCTAATTTCTGCCGCT+TGG | 0.464692 | 5_2:-7193279 | None:intergenic |
| TTCTTCGGTTTCAGCATTTG+CGG | 0.466832 | 5_2:+7191916 | Msa0753550:intron |
| GTTTCTAGCTCGGGCACTCT+AGG | 0.467618 | 5_2:-7194004 | None:intergenic |
| TCCATGCAATGATTCTGATA+AGG | 0.467882 | 5_2:+7194695 | Msa0753550:CDS |
| CTGGGAATTCGGTGACTGCC+AGG | 0.469319 | 5_2:+7196582 | Msa0753550:exon |
| AATCAGTTGTCCCTAACATC+TGG | 0.475710 | 5_2:+7196073 | Msa0753550:intron |
| AGCTCGACCATTTAATAAGA+AGG | 0.477019 | 5_2:+7195068 | Msa0753550:CDS |
| AGGAAGCGTAATCTTGGGCT+TGG | 0.477041 | 5_2:-7193984 | None:intergenic |
| TCTGCACAGGCCATCTGTGA+TGG | 0.480912 | 5_2:+7195002 | Msa0753550:intron |
| TGACTGGGCTCCAGATGTTA+GGG | 0.481922 | 5_2:-7196083 | None:intergenic |
| GAAATTCAGGCAACCGTGCA+GGG | 0.483025 | 5_2:-7194349 | None:intergenic |
| TGAAATTCAGGCAACCGTGC+AGG | 0.483442 | 5_2:-7194350 | None:intergenic |
| TCTATGGAATGTTTCTAGCT+CGG | 0.489717 | 5_2:-7194014 | None:intergenic |
| GTACAAATACTCCTAGAAAG+TGG | 0.495544 | 5_2:+7196813 | Msa0753550:three_prime_UTR |
| CTCTTATGAAGAGGTAATGA+TGG | 0.501693 | 5_2:-7194323 | None:intergenic |
| TGGTTTCCTGTTTAATGTTG+CGG | 0.504893 | 5_2:-7195739 | None:intergenic |
| GATGGATTGGATTATAGTCA+TGG | 0.504951 | 5_2:+7195039 | Msa0753550:CDS |
| ATGAATTCACCTTACTAAAG+AGG | 0.505144 | 5_2:-7195913 | None:intergenic |
| ACTGAAATGGAAAACAATGT+TGG | 0.505866 | 5_2:+7191620 | Msa0753550:exon |
| TCTGGAGCCCAGTCAAATAG+TGG | 0.506582 | 5_2:+7196091 | Msa0753550:CDS |
| CTGCACAGGCCATCTGTGAT+GGG | 0.507509 | 5_2:+7195003 | Msa0753550:intron |
| ATAATCTAAGAAGAGTTGTT+GGG | 0.507543 | 5_2:-7196709 | None:intergenic |
| GTGCAGATACTTTCCAGTAA+AGG | 0.509041 | 5_2:+7195701 | Msa0753550:intron |
| CTTCGATTGTAGTTGTCGCC+TGG | 0.509139 | 5_2:-7196600 | None:intergenic |
| CACCACAGCAGATTTAGACT+TGG | 0.509558 | 5_2:-7192832 | None:intergenic |
| ACCTTGAACACTCTGAAATG+AGG | 0.513391 | 5_2:-7196133 | None:intergenic |
| ACCTTGAACCAACAATTTGA+GGG | 0.514030 | 5_2:-7192914 | None:intergenic |
| TGCTCCAAAGCATGATGGAT+TGG | 0.515441 | 5_2:+7195026 | Msa0753550:CDS |
| ACTCTAGGAAGCGTAATCTT+GGG | 0.521083 | 5_2:-7193989 | None:intergenic |
| GAAGCAAGAAATCATGATGA+TGG | 0.523568 | 5_2:+7191649 | Msa0753550:CDS |
| CATCAAAATGTTGTGCAACC+AGG | 0.534171 | 5_2:+7192180 | Msa0753550:CDS |
| GAAGGATTTAAAAGAAAACA+TGG | 0.535892 | 5_2:+7196242 | Msa0753550:intron |
| CTGGCAGTCACCGAATTCCC+AGG | 0.536237 | 5_2:-7196581 | None:intergenic |
| ACCAACTATGCATACCTCCT+TGG | 0.540572 | 5_2:-7196492 | None:intergenic |
| AAGTGGAACTCAGGTCCACT+CGG | 0.549672 | 5_2:+7196830 | Msa0753550:three_prime_UTR |
| GCAAATTCAGAGAGGGAGTG+AGG | 0.550875 | 5_2:+7196437 | Msa0753550:CDS |
| CTGAAATGCTTCAGGAACCT+GGG | 0.551433 | 5_2:+7196564 | Msa0753550:intron |
| CAAATTCAGAGAGGGAGTGA+GGG | 0.554572 | 5_2:+7196438 | Msa0753550:CDS |
| CTGGTACAATATTGAGTCCA+AGG | 0.554844 | 5_2:+7196475 | Msa0753550:CDS |
| GAGGGTTGCATCAACGAAGC+TGG | 0.554864 | 5_2:+7196456 | Msa0753550:CDS |
| ATACCTTCTTAGGTGCCTTG+TGG | 0.557173 | 5_2:-7193542 | None:intergenic |
| AGTGGAACTCAGGTCCACTC+GGG | 0.560724 | 5_2:+7196831 | Msa0753550:three_prime_UTR |
| CTTAGAACCACTATTTGACT+GGG | 0.562338 | 5_2:-7196098 | None:intergenic |
| GAGAAAAGCAAATTCAGAGA+GGG | 0.563610 | 5_2:+7196430 | Msa0753550:CDS |
| ACTCCTAGAAAGTGGAACTC+AGG | 0.567690 | 5_2:+7196821 | Msa0753550:three_prime_UTR |
| ACAGGAAACCACTGTGCCAA+TGG | 0.568258 | 5_2:+7195751 | Msa0753550:CDS |
| TGGAAAACAATGTTGGAATG+TGG | 0.569916 | 5_2:+7191627 | Msa0753550:CDS |
| TACTAAAGAGGTCAATTGGT+GGG | 0.571250 | 5_2:-7195901 | None:intergenic |
| TCCATAGAGCACAAAGGACT+AGG | 0.572111 | 5_2:+7194029 | Msa0753550:CDS |
| ACCTTATCAGAATCATTGCA+TGG | 0.573862 | 5_2:-7194696 | None:intergenic |
| ACGAGAAGGAGGATAAGTTC+CGG | 0.578369 | 5_2:-7191810 | None:intergenic |
| CCATCGGCTCTCTAGTTAGC+CGG | 0.582610 | 5_2:-7196663 | None:intergenic |
| AACACTCTGAAATGAGGACC+TGG | 0.584017 | 5_2:-7196127 | None:intergenic |
| GAACGCTGGTTCGAAACCGC+CGG | 0.587311 | 5_2:+7191791 | Msa0753550:CDS |
| TTAGCCAACTGACTAGCTGT+AGG | 0.588692 | 5_2:-7192879 | None:intergenic |
| AACTTCCACAACCTGAACGC+TGG | 0.589569 | 5_2:+7191777 | Msa0753550:CDS |
| AACAGCAGAACAATTGGCGA+AGG | 0.595460 | 5_2:+7192801 | Msa0753550:CDS |
| ATAGAATCAGTAATTTGAGA+AGG | 0.607446 | 5_2:+7194905 | Msa0753550:CDS |
| TTCATAAGAGGACCCCTGCA+CGG | 0.608163 | 5_2:+7194336 | Msa0753550:CDS |
| TTTGGAGCACCCATCACAGA+TGG | 0.610704 | 5_2:-7195012 | None:intergenic |
| ATGGGTGCTCCAAAGCATGA+TGG | 0.613189 | 5_2:+7195021 | Msa0753550:CDS |
| AGGTTTAGGATGAAGATGAA+CGG | 0.614262 | 5_2:-7191984 | None:intergenic |
| ACCAAGCGGCAGAAATTAGA+GGG | 0.614941 | 5_2:+7193278 | Msa0753550:CDS |
| TCACCTCAAAACATCGGAGA+GGG | 0.615996 | 5_2:+7194635 | Msa0753550:CDS |
| GAAACCTACAGCTAGTCAGT+TGG | 0.618966 | 5_2:+7192875 | Msa0753550:CDS |
| CTGTACCCAAATTCAAAGCA+CGG | 0.625486 | 5_2:+7194179 | Msa0753550:CDS |
| GGAATTTCACCTCAAAACAT+CGG | 0.626340 | 5_2:+7194629 | Msa0753550:intron |
| TAGCCGGCAAAATTCTGTTG+CGG | 0.626545 | 5_2:-7196647 | None:intergenic |
| TTACTAAAGAGGTCAATTGG+TGG | 0.627296 | 5_2:-7195902 | None:intergenic |
| AGAGGGTGGTCTCTTGCGCA+AGG | 0.627509 | 5_2:+7193295 | Msa0753550:CDS |
| GCAGGGGTCCTCTTATGAAG+AGG | 0.627687 | 5_2:-7194332 | None:intergenic |
| TGAGAGAACGAACGAGAAGG+AGG | 0.631453 | 5_2:-7191821 | None:intergenic |
| AAGGATTTAAAAGAAAACAT+GGG | 0.633883 | 5_2:+7196243 | Msa0753550:intron |
| GTAGCTGCTGATCAAAACGC+TGG | 0.635512 | 5_2:+7193956 | Msa0753550:CDS |
| AAATTCAGGCAACCGTGCAG+GGG | 0.635837 | 5_2:-7194348 | None:intergenic |
| AGTGGTTCTAAGGTGAAACC+AGG | 0.639008 | 5_2:+7196109 | Msa0753550:CDS |
| TTCCAAGTCTAAATCTGCTG+TGG | 0.647649 | 5_2:+7192830 | Msa0753550:CDS |
| AAAATGTCTGGATTATTCGG+AGG | 0.654029 | 5_2:+7192153 | Msa0753550:CDS |
| CCAACTCACCATTGGCACAG+TGG | 0.655857 | 5_2:-7195759 | None:intergenic |
| CTTGAACCAACAATTTGAGG+GGG | 0.660413 | 5_2:-7192912 | None:intergenic |
| CCTTGAACCAACAATTTGAG+GGG | 0.664796 | 5_2:-7192913 | None:intergenic |
| TAGAGAGTCAATCTACCAAG+CGG | 0.667246 | 5_2:+7193264 | Msa0753550:CDS |
| TGTAGCAGATGTGTGCTGCA+TGG | 0.674174 | 5_2:-7194658 | None:intergenic |
| GGAGAAAAGCAAATTCAGAG+AGG | 0.675935 | 5_2:+7196429 | Msa0753550:CDS |
| AAACATTCCATAGAGCACAA+AGG | 0.688582 | 5_2:+7194023 | Msa0753550:CDS |
| GTGGAACTCAGGTCCACTCG+GGG | 0.690256 | 5_2:+7196832 | Msa0753550:three_prime_UTR |
| GCAGTGAAATCGAAGAAGCG+AGG | 0.694547 | 5_2:-7191731 | None:intergenic |
| TTCACCTCAAAACATCGGAG+AGG | 0.699050 | 5_2:+7194634 | Msa0753550:CDS |
| AAGCGGCAGAAATTAGAGGG+TGG | 0.721444 | 5_2:+7193281 | Msa0753550:CDS |
| AGAAGGAGGATAAGTTCCGG+CGG | 0.732383 | 5_2:-7191807 | None:intergenic |
| TGAAGCAGAACACTTGACAG+TGG | 0.737347 | 5_2:+7194156 | Msa0753550:CDS |
| GTACAATATTGAGTCCAAGG+AGG | 0.778248 | 5_2:+7196478 | Msa0753550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAATATCTAATATTAATA+AGG | - | chr5_2:7193595-7193614 | None:intergenic | 10.0% |
| !!! | TAAATCTTTTTATTTTTTGA+AGG | - | chr5_2:7195419-7195438 | None:intergenic | 10.0% |
| !! | TGGATTATTAGAATTAAAAT+TGG | + | chr5_2:7193348-7193367 | Msa0753550:intron | 15.0% |
| !! | AATATGATATATATGGTAAT+GGG | - | chr5_2:7193673-7193692 | None:intergenic | 15.0% |
| !! | TAGATAAATTTAGTATTGTT+AGG | + | chr5_2:7194231-7194250 | Msa0753550:intron | 15.0% |
| !! | AATGTAGTTCAATATAAATT+GGG | - | chr5_2:7194807-7194826 | None:intergenic | 15.0% |
| !! | CTGATTGAATTATATTTAAA+GGG | + | chr5_2:7195156-7195175 | Msa0753550:intron | 15.0% |
| !!! | TAAATTTAATGTGAGAATTT+TGG | + | chr5_2:7196172-7196191 | Msa0753550:intron | 15.0% |
| !!! | ATATTGAGTTATTTCTTTTT+GGG | + | chr5_2:7196218-7196237 | Msa0753550:intron | 15.0% |
| !!! | TGGATATTGTTATATTTTTA+AGG | - | chr5_2:7196311-7196330 | None:intergenic | 15.0% |
| !! | TTATATTTATCGTTGTTCTT+CGG | + | chr5_2:7191901-7191920 | Msa0753550:intron | 20.0% |
| !!! | TTTTCAAATCCTAATCTATA+TGG | + | chr5_2:7192310-7192329 | Msa0753550:intron | 20.0% |
| !! | ATCAGAAAAGAAAAAAAGAA+GGG | - | chr5_2:7192650-7192669 | None:intergenic | 20.0% |
| !! | TATCAGAAAAGAAAAAAAGA+AGG | - | chr5_2:7192651-7192670 | None:intergenic | 20.0% |
| !! | AAAGACATGAACTATTATTA+TGG | + | chr5_2:7192972-7192991 | Msa0753550:intron | 20.0% |
| !! | TAACTTTCCATTTAATCTAA+TGG | - | chr5_2:7193409-7193428 | None:intergenic | 20.0% |
| !! | CAATATGATATATATGGTAA+TGG | - | chr5_2:7193674-7193693 | None:intergenic | 20.0% |
| !! | TGATAGAATACTTCTATTAT+GGG | + | chr5_2:7193765-7193784 | Msa0753550:intron | 20.0% |
| !! | GTGGAAAATTTACTAAATAA+TGG | + | chr5_2:7193787-7193806 | Msa0753550:intron | 20.0% |
| !! | AAGTAAAAAATTTCACATGA+TGG | + | chr5_2:7193902-7193921 | Msa0753550:intron | 20.0% |
| !!! | TAGTATTGTTAGGTTAATTT+TGG | + | chr5_2:7194241-7194260 | Msa0753550:intron | 20.0% |
| !! | TTATAAACAGGATCATAAAA+TGG | - | chr5_2:7194417-7194436 | None:intergenic | 20.0% |
| !! | TACACATTAATGAGTATAAT+TGG | + | chr5_2:7194519-7194538 | Msa0753550:intron | 20.0% |
| !!! | TTGTTTGTGTGATTAATTTT+TGG | - | chr5_2:7194557-7194576 | None:intergenic | 20.0% |
| !! | CAATGTAGTTCAATATAAAT+TGG | - | chr5_2:7194808-7194827 | None:intergenic | 20.0% |
| !! | CAATTTATATTGAACTACAT+TGG | + | chr5_2:7194806-7194825 | Msa0753550:intron | 20.0% |
| !!! | AAATTACTGATTCTATTTTG+TGG | - | chr5_2:7194901-7194920 | None:intergenic | 20.0% |
| !! | AAATTAGTACTATTGTTTCA+CGG | - | chr5_2:7194971-7194990 | None:intergenic | 20.0% |
| !! | GACACTGTAAAAAAAAAATT+AGG | + | chr5_2:7195097-7195116 | Msa0753550:intron | 20.0% |
| !! | GCTGATTGAATTATATTTAA+AGG | + | chr5_2:7195155-7195174 | Msa0753550:intron | 20.0% |
| !!! | ACGATAATACTTTTATTACA+AGG | - | chr5_2:7195469-7195488 | None:intergenic | 20.0% |
| !! | ACATATAACTAAGAAAAGAA+AGG | - | chr5_2:7195655-7195674 | None:intergenic | 20.0% |
| !!! | CATATTGAGTTATTTCTTTT+TGG | + | chr5_2:7196217-7196236 | Msa0753550:intron | 20.0% |
| !! | AAGGATTTAAAAGAAAACAT+GGG | + | chr5_2:7196243-7196262 | Msa0753550:intron | 20.0% |
| !!! | ATTGTTATATTTTTAAGGCA+GGG | - | chr5_2:7196306-7196325 | None:intergenic | 20.0% |
| !!! | TATTGTTATATTTTTAAGGC+AGG | - | chr5_2:7196307-7196326 | None:intergenic | 20.0% |
| !! | TCATACAAAATTACTTTGTT+AGG | + | chr5_2:7196749-7196768 | Msa0753550:three_prime_UTR | 20.0% |
| ! | TAAAAAAAGATGAAGACGAT+CGG | - | chr5_2:7191884-7191903 | None:intergenic | 25.0% |
| !! | TGTTGAAAAACTTTAGGTTT+AGG | - | chr5_2:7192001-7192020 | None:intergenic | 25.0% |
| ! | CCAAAATGTTGAAAAACTTT+AGG | - | chr5_2:7192007-7192026 | None:intergenic | 25.0% |
| !!! | CCTAAAGTTTTTCAACATTT+TGG | + | chr5_2:7192004-7192023 | Msa0753550:CDS | 25.0% |
| !!! | GAATAGCTTTATAATCTAAC+TGG | + | chr5_2:7192089-7192108 | Msa0753550:intron | 25.0% |
| !!! | TAACTGGTTTTTACTTGATT+AGG | + | chr5_2:7192105-7192124 | Msa0753550:intron | 25.0% |
| ! | GAAAAAATGTCTGGATTATT+CGG | + | chr5_2:7192150-7192169 | Msa0753550:CDS | 25.0% |
| ! | TTCTGATGAAATTTATTACC+TGG | - | chr5_2:7192201-7192220 | None:intergenic | 25.0% |
| ! | AATAAGTTGTTTATCCAAAC+AGG | - | chr5_2:7192337-7192356 | None:intergenic | 25.0% |
| ! | TCAGAAAAGAAAAAAAGAAG+GGG | - | chr5_2:7192649-7192668 | None:intergenic | 25.0% |
| ! | ATGCAATAGTACAACATTTA+TGG | - | chr5_2:7193059-7193078 | None:intergenic | 25.0% |
| ! | AGTATCAAAAGGAAAAAGTA+AGG | - | chr5_2:7193087-7193106 | None:intergenic | 25.0% |
| ! | ATAATCTATCAGAGGAAAAA+GGG | - | chr5_2:7193329-7193348 | None:intergenic | 25.0% |
| ! | AATAATCCATAATCTATCAG+AGG | - | chr5_2:7193337-7193356 | None:intergenic | 25.0% |
| ! | ACTTGAACCATTAGATTAAA+TGG | + | chr5_2:7193399-7193418 | Msa0753550:intron | 25.0% |
| ! | AAGTACTTGTATAATGCATT+AGG | - | chr5_2:7193572-7193591 | None:intergenic | 25.0% |
| ! | AGTGCTCAATATGATATATA+TGG | - | chr5_2:7193680-7193699 | None:intergenic | 25.0% |
| ! | CTGATAGAATACTTCTATTA+TGG | + | chr5_2:7193764-7193783 | Msa0753550:intron | 25.0% |
| ! | TAAAAAATTTCACATGATGG+CGG | + | chr5_2:7193905-7193924 | Msa0753550:intron | 25.0% |
| ! | TTATGAGCATAAATAGTTAG+AGG | - | chr5_2:7194286-7194305 | None:intergenic | 25.0% |
| ! | ACATTAATGAGTATAATTGG+AGG | + | chr5_2:7194522-7194541 | Msa0753550:intron | 25.0% |
| ! | ATCACACAAACAAGTTTATT+CGG | + | chr5_2:7194564-7194583 | Msa0753550:intron | 25.0% |
| ! | ATAGAATCAGTAATTTGAGA+AGG | + | chr5_2:7194905-7194924 | Msa0753550:CDS | 25.0% |
| ! | CTGATTACCTTCTTATTAAA+TGG | - | chr5_2:7195078-7195097 | None:intergenic | 25.0% |
| !!! | TCAATTTTAGTACAGAAAAG+AGG | + | chr5_2:7195867-7195886 | Msa0753550:CDS | 25.0% |
| !! | GTTTTTCTTTAATCATTCTC+TGG | + | chr5_2:7195941-7195960 | Msa0753550:intron | 25.0% |
| ! | AGGAATTTATAATGCAAAGT+GGG | - | chr5_2:7195996-7196015 | None:intergenic | 25.0% |
| ! | GAAGGATTTAAAAGAAAACA+TGG | + | chr5_2:7196242-7196261 | Msa0753550:intron | 25.0% |
| ! | TGATGTTTCACTAAACTTAA+AGG | - | chr5_2:7196350-7196369 | None:intergenic | 25.0% |
| ! | TAGACATTAAATGTCATCTT+TGG | + | chr5_2:7196372-7196391 | Msa0753550:intron | 25.0% |
| !! | TAGGAAAAGCCTTTTATATT+TGG | + | chr5_2:7196408-7196427 | Msa0753550:intron | 25.0% |
| !! | TGCTTTTCTCCAAATATAAA+AGG | - | chr5_2:7196420-7196439 | None:intergenic | 25.0% |
| ! | ATAATCTAAGAAGAGTTGTT+GGG | - | chr5_2:7196712-7196731 | None:intergenic | 25.0% |
| ! | AATAATCTAAGAAGAGTTGT+TGG | - | chr5_2:7196713-7196732 | None:intergenic | 25.0% |
| TACTACTACTACTACTGAAA+TGG | + | chr5_2:7191607-7191626 | Msa0753550:exon | 30.0% | |
| ACTGAAATGGAAAACAATGT+TGG | + | chr5_2:7191620-7191639 | Msa0753550:exon | 30.0% | |
| TCAAATAAGCCAATCGTAAT+AGG | + | chr5_2:7192543-7192562 | Msa0753550:intron | 30.0% | |
| TGAATTAATATCTTGTGCCA+TGG | + | chr5_2:7192591-7192610 | Msa0753550:intron | 30.0% | |
| GTTTACAACAAAAATTGCCA+TGG | - | chr5_2:7192611-7192630 | None:intergenic | 30.0% | |
| !! | TGTCTTTTCATCTAAGATAC+AGG | - | chr5_2:7192959-7192978 | None:intergenic | 30.0% |
| !! | ACTTTTTCCTTTTGATACTC+TGG | + | chr5_2:7193088-7193107 | Msa0753550:intron | 30.0% |
| GGAAGAAGTTATGTAATCTT+TGG | + | chr5_2:7193129-7193148 | Msa0753550:intron | 30.0% | |
| !!! | TTACAACTTCTGTTGTTTTC+AGG | + | chr5_2:7193183-7193202 | Msa0753550:intron | 30.0% |
| CATAATCTATCAGAGGAAAA+AGG | - | chr5_2:7193330-7193349 | None:intergenic | 30.0% | |
| ! | CTTTTTCCTCTGATAGATTA+TGG | + | chr5_2:7193328-7193347 | Msa0753550:intron | 30.0% |
| ATTAGGATTCATACCTTCTT+AGG | - | chr5_2:7193555-7193574 | None:intergenic | 30.0% | |
| CAAGCCATATGAAATGTATT+TGG | - | chr5_2:7193631-7193650 | None:intergenic | 30.0% | |
| ATCTGTTTACAAAATGCAGT+AGG | - | chr5_2:7193727-7193746 | None:intergenic | 30.0% | |
| TAGAATACTTCTATTATGGG+TGG | + | chr5_2:7193768-7193787 | Msa0753550:intron | 30.0% | |
| TAGAGTTCTCCATTACAAAT+TGG | + | chr5_2:7193819-7193838 | Msa0753550:intron | 30.0% | |
| CTTGCTAATCCAATTTGTAA+TGG | - | chr5_2:7193831-7193850 | None:intergenic | 30.0% | |
| CTTGACACTCAAAAGATATA+CGG | - | chr5_2:7193885-7193904 | None:intergenic | 30.0% | |
| TATCCTTACTTCATTAGATG+AGG | - | chr5_2:7194104-7194123 | None:intergenic | 30.0% | |
| !! | ATACCCACTTTTCTGTTTAT+TGG | - | chr5_2:7194205-7194224 | None:intergenic | 30.0% |
| ATGATCCTGTTTATAAAGAG+TGG | + | chr5_2:7194421-7194440 | Msa0753550:intron | 30.0% | |
| TCTTTCCACTCTTTATAAAC+AGG | - | chr5_2:7194429-7194448 | None:intergenic | 30.0% | |
| ! | CAATGTTTTTCGTTATGTCT+AGG | - | chr5_2:7194497-7194516 | None:intergenic | 30.0% |
| !!! | CATTTTTTGTCTTGCTTCTA+AGG | + | chr5_2:7194608-7194627 | Msa0753550:intron | 30.0% |
| !!! | TACATTGGTTTTGAAATCTC+TGG | + | chr5_2:7194821-7194840 | Msa0753550:intron | 30.0% |
| !!! | ACATTGGTTTTGAAATCTCT+GGG | + | chr5_2:7194822-7194841 | Msa0753550:intron | 30.0% |
| ! | GACAAAAATGCTATGTTTTC+TGG | + | chr5_2:7194874-7194893 | Msa0753550:CDS | 30.0% |
| ! | GTATGAACTGTCATTTATCA+TGG | - | chr5_2:7194940-7194959 | None:intergenic | 30.0% |
| ! | CAAATCTGATTTTGTGATGT+TGG | - | chr5_2:7195276-7195295 | None:intergenic | 30.0% |
| ! | TTTTGTTGATCAAGATCAGA+TGG | - | chr5_2:7195321-7195340 | None:intergenic | 30.0% |
| GCTAAAGTTATCATTGTACT+AGG | + | chr5_2:7195393-7195412 | Msa0753550:intron | 30.0% | |
| ACAACATTTATACAGTACAG+CGG | - | chr5_2:7195683-7195702 | None:intergenic | 30.0% | |
| !! | GATGTTACTTTAATTCGTAC+AGG | + | chr5_2:7195841-7195860 | Msa0753550:intron | 30.0% |
| ATGAATTCACCTTACTAAAG+AGG | - | chr5_2:7195916-7195935 | None:intergenic | 30.0% | |
| GAGGAATTTATAATGCAAAG+TGG | - | chr5_2:7195997-7196016 | None:intergenic | 30.0% | |
| TTAAATATCGTTACGAAGTG+AGG | - | chr5_2:7196016-7196035 | None:intergenic | 30.0% | |
| !!! | AGTTATTTCTTTTTGGGTGA+AGG | + | chr5_2:7196224-7196243 | Msa0753550:intron | 30.0% |
| ! | AGGGATAGATTTTTACCTTT+TGG | - | chr5_2:7196287-7196306 | None:intergenic | 30.0% |
| TGTTTCACTAAACTTAAAGG+AGG | - | chr5_2:7196347-7196366 | None:intergenic | 30.0% | |
| TGCTTTCATGTTTGTTCAAT+TGG | + | chr5_2:7196520-7196539 | Msa0753550:intron | 30.0% | |
| ATTCTTTACTGAAATGCTTC+AGG | + | chr5_2:7196556-7196575 | Msa0753550:intron | 30.0% | |
| TGGAAAACAATGTTGGAATG+TGG | + | chr5_2:7191627-7191646 | Msa0753550:CDS | 35.0% | |
| GAAGCAAGAAATCATGATGA+TGG | + | chr5_2:7191649-7191668 | Msa0753550:CDS | 35.0% | |
| ! | AGGTTTAGGATGAAGATGAA+CGG | - | chr5_2:7191987-7192006 | None:intergenic | 35.0% |
| !!! | CATTTTTTCACTCGCATTCA+CGG | - | chr5_2:7192139-7192158 | None:intergenic | 35.0% |
| AATGCGAGTGAAAAAATGTC+TGG | + | chr5_2:7192141-7192160 | Msa0753550:CDS | 35.0% | |
| AAAATGTCTGGATTATTCGG+AGG | + | chr5_2:7192153-7192172 | Msa0753550:CDS | 35.0% | |
| ATTAGTGAATTCATGCGTGA+CGG | - | chr5_2:7192256-7192275 | None:intergenic | 35.0% | |
| CAAACAGGACCATATAGATT+AGG | - | chr5_2:7192322-7192341 | None:intergenic | 35.0% | |
| CTAATCTATATGGTCCTGTT+TGG | + | chr5_2:7192320-7192339 | Msa0753550:intron | 35.0% | |
| !! | CTTATTTTCACAATCACTCC+AGG | - | chr5_2:7192461-7192480 | None:intergenic | 35.0% |
| ! | GAGTGTTTTACACTATTTCC+AGG | + | chr5_2:7192768-7192787 | Msa0753550:intron | 35.0% |
| ACCTTTAACAGCAGAACAAT+TGG | + | chr5_2:7192795-7192814 | Msa0753550:CDS | 35.0% | |
| ACCTTGAACCAACAATTTGA+GGG | - | chr5_2:7192917-7192936 | None:intergenic | 35.0% | |
| TGGTTCAAGGTGATTATTGA+AGG | + | chr5_2:7192926-7192945 | Msa0753550:intron | 35.0% | |
| GAAAGGAAATGCAGTTCATT+TGG | - | chr5_2:7193158-7193177 | None:intergenic | 35.0% | |
| CAGAAGTTGTAAATGACGAA+AGG | - | chr5_2:7193175-7193194 | None:intergenic | 35.0% | |
| !!! | TGTTGTTTTCAGGTTTCAGA+AGG | + | chr5_2:7193193-7193212 | Msa0753550:intron | 35.0% |
| GATTAGTGTAGCTAACTCTT+TGG | + | chr5_2:7193238-7193257 | Msa0753550:CDS | 35.0% | |
| CATGCTACAAATCAAACATG+AGG | - | chr5_2:7193374-7193393 | None:intergenic | 35.0% | |
| !! | CTCATGTTTGATTTGTAGCA+TGG | + | chr5_2:7193372-7193391 | Msa0753550:intron | 35.0% |
| ! | ACAAGCTAATTTTGTCCACA+AGG | + | chr5_2:7193527-7193546 | Msa0753550:CDS | 35.0% |
| CCATATGAAATGTATTTGGC+AGG | - | chr5_2:7193627-7193646 | None:intergenic | 35.0% | |
| CCTGCCAAATACATTTCATA+TGG | + | chr5_2:7193624-7193643 | Msa0753550:intron | 35.0% | |
| GCAGTAGGAATAGAAAGTAA+TGG | - | chr5_2:7193712-7193731 | None:intergenic | 35.0% | |
| ATATACGGCACTTTGTCTAA+AGG | - | chr5_2:7193870-7193889 | None:intergenic | 35.0% | |
| !! | TCTATGGAATGTTTCTAGCT+CGG | - | chr5_2:7194017-7194036 | None:intergenic | 35.0% |
| AAACATTCCATAGAGCACAA+AGG | + | chr5_2:7194023-7194042 | Msa0753550:CDS | 35.0% | |
| !! | AGGTTTGTTATTGTGCTGTT+CGG | + | chr5_2:7194049-7194068 | Msa0753550:intron | 35.0% |
| CTTCCTCATCTAATGAAGTA+AGG | + | chr5_2:7194098-7194117 | Msa0753550:intron | 35.0% | |
| AGCATAAATAGTTAGAGGAG+AGG | - | chr5_2:7194281-7194300 | None:intergenic | 35.0% | |
| CTCTTATGAAGAGGTAATGA+TGG | - | chr5_2:7194326-7194345 | None:intergenic | 35.0% | |
| CATCATTACCTCTTCATAAG+AGG | + | chr5_2:7194324-7194343 | Msa0753550:CDS | 35.0% | |
| CAAGAGCTTACTTGAAATTC+AGG | - | chr5_2:7194365-7194384 | None:intergenic | 35.0% | |
| AGACAAAAAATGTGAGCTTC+TGG | - | chr5_2:7194600-7194619 | None:intergenic | 35.0% | |
| GGAATTTCACCTCAAAACAT+CGG | + | chr5_2:7194629-7194648 | Msa0753550:intron | 35.0% | |
| TCCATGCAATGATTCTGATA+AGG | + | chr5_2:7194695-7194714 | Msa0753550:CDS | 35.0% | |
| ACCTTATCAGAATCATTGCA+TGG | - | chr5_2:7194699-7194718 | None:intergenic | 35.0% | |
| TAATCCAATCCATCATGCTT+TGG | - | chr5_2:7195033-7195052 | None:intergenic | 35.0% | |
| !! | GATGGATTGGATTATAGTCA+TGG | + | chr5_2:7195039-7195058 | Msa0753550:CDS | 35.0% |
| AGCTCGACCATTTAATAAGA+AGG | + | chr5_2:7195068-7195087 | Msa0753550:CDS | 35.0% | |
| GATAATGACTGCACACAATT+TGG | - | chr5_2:7195194-7195213 | None:intergenic | 35.0% | |
| CTTTCCAGTAAAGGAGATAT+TGG | + | chr5_2:7195710-7195729 | Msa0753550:CDS | 35.0% | |
| AACACCAATATCTCCTTTAC+TGG | - | chr5_2:7195717-7195736 | None:intergenic | 35.0% | |
| ! | TGTTTTCCGCAACATTAAAC+AGG | + | chr5_2:7195733-7195752 | Msa0753550:CDS | 35.0% |
| TGGTTTCCTGTTTAATGTTG+CGG | - | chr5_2:7195742-7195761 | None:intergenic | 35.0% | |
| ! | GTTAAACTTTTCCATCCAAG+GGG | - | chr5_2:7195799-7195818 | None:intergenic | 35.0% |
| ! | CGTTAAACTTTTCCATCCAA+GGG | - | chr5_2:7195800-7195819 | None:intergenic | 35.0% |
| ! | TCGTTAAACTTTTCCATCCA+AGG | - | chr5_2:7195801-7195820 | None:intergenic | 35.0% |
| TACTAAAGAGGTCAATTGGT+GGG | - | chr5_2:7195904-7195923 | None:intergenic | 35.0% | |
| TTACTAAAGAGGTCAATTGG+TGG | - | chr5_2:7195905-7195924 | None:intergenic | 35.0% | |
| ACCAATTGACCTCTTTAGTA+AGG | + | chr5_2:7195904-7195923 | Msa0753550:CDS | 35.0% | |
| ACCTTACTAAAGAGGTCAAT+TGG | - | chr5_2:7195908-7195927 | None:intergenic | 35.0% | |
| CTTAGAACCACTATTTGACT+GGG | - | chr5_2:7196101-7196120 | None:intergenic | 35.0% | |
| GAGAAAAGCAAATTCAGAGA+GGG | + | chr5_2:7196430-7196449 | Msa0753550:CDS | 35.0% | |
| GTACAAATACTCCTAGAAAG+TGG | + | chr5_2:7196813-7196832 | Msa0753550:three_prime_UTR | 35.0% | |
| TTCTTCGGTTTCAGCATTTG+CGG | + | chr5_2:7191916-7191935 | Msa0753550:intron | 40.0% | |
| CATCAAAATGTTGTGCAACC+AGG | + | chr5_2:7192180-7192199 | Msa0753550:CDS | 40.0% | |
| !! | GTTGTTTTCATCAGCTATCC+TGG | + | chr5_2:7192440-7192459 | Msa0753550:intron | 40.0% |
| CTTGTGAGAGTGAGACTATT+CGG | - | chr5_2:7192502-7192521 | None:intergenic | 40.0% | |
| CCTCAAACTCCTATTACGAT+TGG | - | chr5_2:7192555-7192574 | None:intergenic | 40.0% | |
| CCAATCGTAATAGGAGTTTG+AGG | + | chr5_2:7192552-7192571 | Msa0753550:intron | 40.0% | |
| GCCAATTGTTCTGCTGTTAA+AGG | - | chr5_2:7192799-7192818 | None:intergenic | 40.0% | |
| TTCCAAGTCTAAATCTGCTG+TGG | + | chr5_2:7192830-7192849 | Msa0753550:CDS | 40.0% | |
| GTCAGTTGGCTAAGCAAAAT+CGG | + | chr5_2:7192889-7192908 | Msa0753550:CDS | 40.0% | |
| CTTGAACCAACAATTTGAGG+GGG | - | chr5_2:7192915-7192934 | None:intergenic | 40.0% | |
| CCTTGAACCAACAATTTGAG+GGG | - | chr5_2:7192916-7192935 | None:intergenic | 40.0% | |
| CACCTTGAACCAACAATTTG+AGG | - | chr5_2:7192918-7192937 | None:intergenic | 40.0% | |
| CTTCCATACTAGTTCAACAG+AGG | - | chr5_2:7193114-7193133 | None:intergenic | 40.0% | |
| GGTACAACAAGCGCATAAAA+AGG | + | chr5_2:7193214-7193233 | Msa0753550:CDS | 40.0% | |
| TAGAGAGTCAATCTACCAAG+CGG | + | chr5_2:7193264-7193283 | Msa0753550:CDS | 40.0% | |
| ! | ACTCTAGGAAGCGTAATCTT+GGG | - | chr5_2:7193992-7194011 | None:intergenic | 40.0% |
| !! | CTATGGAATGTTTCTAGCTC+GGG | - | chr5_2:7194016-7194035 | None:intergenic | 40.0% |
| !!! | TTCAGCAGCATTTTTAGGTC+TGG | - | chr5_2:7194140-7194159 | None:intergenic | 40.0% |
| ! | TCTGCTTCAGCAGCATTTTT+AGG | - | chr5_2:7194145-7194164 | None:intergenic | 40.0% |
| CTGTACCCAAATTCAAAGCA+CGG | + | chr5_2:7194179-7194198 | Msa0753550:CDS | 40.0% | |
| ! | ATTGGCCGTGCTTTGAATTT+GGG | - | chr5_2:7194187-7194206 | None:intergenic | 40.0% |
| ! | TATTGGCCGTGCTTTGAATT+TGG | - | chr5_2:7194188-7194207 | None:intergenic | 40.0% |
| ACGGCCAATAAACAGAAAAG+TGG | + | chr5_2:7194198-7194217 | Msa0753550:intron | 40.0% | |
| CGGCCAATAAACAGAAAAGT+GGG | + | chr5_2:7194199-7194218 | Msa0753550:intron | 40.0% | |
| TTGAATTGCTATCTCTGCAC+AGG | + | chr5_2:7194989-7195008 | Msa0753550:intron | 40.0% | |
| ! | GTGGTTAGCTCAAGATTCAA+TGG | + | chr5_2:7195242-7195261 | Msa0753550:intron | 40.0% |
| ! | GAAAGGTGTATCAGAGAAGA+TGG | + | chr5_2:7195566-7195585 | Msa0753550:intron | 40.0% |
| GTGCAGATACTTTCCAGTAA+AGG | + | chr5_2:7195701-7195720 | Msa0753550:intron | 40.0% | |
| AGTGATAACCAACTCACCAT+TGG | - | chr5_2:7195770-7195789 | None:intergenic | 40.0% | |
| AATCAGTTGTCCCTAACATC+TGG | + | chr5_2:7196073-7196092 | Msa0753550:intron | 40.0% | |
| CCTTAGAACCACTATTTGAC+TGG | - | chr5_2:7196102-7196121 | None:intergenic | 40.0% | |
| ! | CCAGTCAAATAGTGGTTCTA+AGG | + | chr5_2:7196099-7196118 | Msa0753550:CDS | 40.0% |
| ! | TCCTCATTTCAGAGTGTTCA+AGG | + | chr5_2:7196132-7196151 | Msa0753550:CDS | 40.0% |
| !! | ACCTTGAACACTCTGAAATG+AGG | - | chr5_2:7196136-7196155 | None:intergenic | 40.0% |
| CATGGGAAATTCCTTTCATC+TGG | + | chr5_2:7196260-7196279 | Msa0753550:CDS | 40.0% | |
| TTCCTTTCATCTGGACCAAA+AGG | + | chr5_2:7196269-7196288 | Msa0753550:CDS | 40.0% | |
| ! | TACCTTTTGGTCCAGATGAA+AGG | - | chr5_2:7196274-7196293 | None:intergenic | 40.0% |
| CTTAAAGGAGGAACAGAACA+AGG | - | chr5_2:7196335-7196354 | None:intergenic | 40.0% | |
| CTTTGGCTGACAAATGATGT+AGG | + | chr5_2:7196389-7196408 | Msa0753550:intron | 40.0% | |
| GGAGAAAAGCAAATTCAGAG+AGG | + | chr5_2:7196429-7196448 | Msa0753550:CDS | 40.0% | |
| CTGGTACAATATTGAGTCCA+AGG | + | chr5_2:7196475-7196494 | Msa0753550:CDS | 40.0% | |
| GTACAATATTGAGTCCAAGG+AGG | + | chr5_2:7196478-7196497 | Msa0753550:CDS | 40.0% | |
| ! | TATCCGCAACAGAATTTTGC+CGG | + | chr5_2:7196644-7196663 | Msa0753550:three_prime_UTR | 40.0% |
| !!! | AGGTTTTGTTACGTCTCCAT+CGG | - | chr5_2:7196682-7196701 | None:intergenic | 40.0% |
| AAGAGTTGTTGGGCACTATT+AGG | - | chr5_2:7196702-7196721 | None:intergenic | 40.0% | |
| GTTAAAAACAAAACCCCGAG+TGG | - | chr5_2:7196848-7196867 | None:intergenic | 40.0% | |
| ACGAGAAGGAGGATAAGTTC+CGG | - | chr5_2:7191813-7191832 | None:intergenic | 45.0% | |
| GAATGAGAGAACGAACGAGA+AGG | - | chr5_2:7191827-7191846 | None:intergenic | 45.0% | |
| TTCACTCGCATTCACGGAAT+TGG | - | chr5_2:7192133-7192152 | None:intergenic | 45.0% | |
| CTGCTGTTAAAGGTCATTCC+TGG | - | chr5_2:7192789-7192808 | None:intergenic | 45.0% | |
| AACAGCAGAACAATTGGCGA+AGG | + | chr5_2:7192801-7192820 | Msa0753550:CDS | 45.0% | |
| CACCACAGCAGATTTAGACT+TGG | - | chr5_2:7192835-7192854 | None:intergenic | 45.0% | |
| GAAACCTACAGCTAGTCAGT+TGG | + | chr5_2:7192875-7192894 | Msa0753550:CDS | 45.0% | |
| ! | TTAGCCAACTGACTAGCTGT+AGG | - | chr5_2:7192882-7192901 | None:intergenic | 45.0% |
| !! | CCCCTCAAATTGTTGGTTCA+AGG | + | chr5_2:7192913-7192932 | Msa0753550:CDS | 45.0% |
| ! | ACAGAGGCCAGAGTATCAAA+AGG | - | chr5_2:7193098-7193117 | None:intergenic | 45.0% |
| TGGCCTCTGTTGAACTAGTA+TGG | + | chr5_2:7193108-7193127 | Msa0753550:intron | 45.0% | |
| TACCAAGCGGCAGAAATTAG+AGG | + | chr5_2:7193277-7193296 | Msa0753550:CDS | 45.0% | |
| ACCAAGCGGCAGAAATTAGA+GGG | + | chr5_2:7193278-7193297 | Msa0753550:CDS | 45.0% | |
| TACCACATCTTTCCTGTGAC+AGG | + | chr5_2:7193488-7193507 | Msa0753550:intron | 45.0% | |
| AACCTGTCACAGGAAAGATG+TGG | - | chr5_2:7193493-7193512 | None:intergenic | 45.0% | |
| ACATCTTTCCTGTGACAGGT+TGG | + | chr5_2:7193492-7193511 | Msa0753550:intron | 45.0% | |
| ATACCTTCTTAGGTGCCTTG+TGG | - | chr5_2:7193545-7193564 | None:intergenic | 45.0% | |
| ! | CACTCTAGGAAGCGTAATCT+TGG | - | chr5_2:7193993-7194012 | None:intergenic | 45.0% |
| TCCATAGAGCACAAAGGACT+AGG | + | chr5_2:7194029-7194048 | Msa0753550:CDS | 45.0% | |
| ACCTAGTCCTTTGTGCTCTA+TGG | - | chr5_2:7194033-7194052 | None:intergenic | 45.0% | |
| TGAAGCAGAACACTTGACAG+TGG | + | chr5_2:7194156-7194175 | Msa0753550:CDS | 45.0% | |
| TTCACCTCAAAACATCGGAG+AGG | + | chr5_2:7194634-7194653 | Msa0753550:CDS | 45.0% | |
| TCACCTCAAAACATCGGAGA+GGG | + | chr5_2:7194635-7194654 | Msa0753550:CDS | 45.0% | |
| !! | GACTGATTTTTGCTGTGTGC+AGG | + | chr5_2:7194846-7194865 | Msa0753550:intron | 45.0% |
| !! | TGCTCCAAAGCATGATGGAT+TGG | + | chr5_2:7195026-7195045 | Msa0753550:CDS | 45.0% |
| GTTATCACTTTGTCACCCCT+TGG | + | chr5_2:7195781-7195800 | Msa0753550:intron | 45.0% | |
| !! | AGTGGTTCTAAGGTGAAACC+AGG | + | chr5_2:7196109-7196128 | Msa0753550:CDS | 45.0% |
| !! | AACACTCTGAAATGAGGACC+TGG | - | chr5_2:7196130-7196149 | None:intergenic | 45.0% |
| AAGGAGGAACAGAACAAGGA+TGG | - | chr5_2:7196331-7196350 | None:intergenic | 45.0% | |
| CAAATTCAGAGAGGGAGTGA+GGG | + | chr5_2:7196438-7196457 | Msa0753550:CDS | 45.0% | |
| ! | TCCAAGGAGGTATGCATAGT+TGG | + | chr5_2:7196491-7196510 | Msa0753550:intron | 45.0% |
| ACCAACTATGCATACCTCCT+TGG | - | chr5_2:7196495-7196514 | None:intergenic | 45.0% | |
| ACTGAAATGCTTCAGGAACC+TGG | + | chr5_2:7196563-7196582 | Msa0753550:intron | 45.0% | |
| CTGAAATGCTTCAGGAACCT+GGG | + | chr5_2:7196564-7196583 | Msa0753550:intron | 45.0% | |
| TAGCCGGCAAAATTCTGTTG+CGG | - | chr5_2:7196650-7196669 | None:intergenic | 45.0% | |
| ACTCCTAGAAAGTGGAACTC+AGG | + | chr5_2:7196821-7196840 | Msa0753550:three_prime_UTR | 45.0% | |
| !!! | ATTAAATTTAAAATTATAGA+AGG | - | chr5_2:7196162-7196181 | None:intergenic | 5.0% |
| GCAGTGAAATCGAAGAAGCG+AGG | - | chr5_2:7191734-7191753 | None:intergenic | 50.0% | |
| AACTTCCACAACCTGAACGC+TGG | + | chr5_2:7191777-7191796 | Msa0753550:CDS | 50.0% | |
| AGAAGGAGGATAAGTTCCGG+CGG | - | chr5_2:7191810-7191829 | None:intergenic | 50.0% | |
| TGAGAGAACGAACGAGAAGG+AGG | - | chr5_2:7191824-7191843 | None:intergenic | 50.0% | |
| AATCGGCCCCCTCAAATTGT+TGG | + | chr5_2:7192906-7192925 | Msa0753550:CDS | 50.0% | |
| ACCCTCTAATTTCTGCCGCT+TGG | - | chr5_2:7193282-7193301 | None:intergenic | 50.0% | |
| AAGCGGCAGAAATTAGAGGG+TGG | + | chr5_2:7193281-7193300 | Msa0753550:CDS | 50.0% | |
| TCACATCACCAACCTGTCAC+AGG | - | chr5_2:7193503-7193522 | None:intergenic | 50.0% | |
| ! | TGTCCACAAGGCACCTAAGA+AGG | + | chr5_2:7193539-7193558 | Msa0753550:CDS | 50.0% |
| GTAGCTGCTGATCAAAACGC+TGG | + | chr5_2:7193956-7193975 | Msa0753550:CDS | 50.0% | |
| ! | AGGAAGCGTAATCTTGGGCT+TGG | - | chr5_2:7193987-7194006 | None:intergenic | 50.0% |
| TTCATAAGAGGACCCCTGCA+CGG | + | chr5_2:7194336-7194355 | Msa0753550:CDS | 50.0% | |
| AAATTCAGGCAACCGTGCAG+GGG | - | chr5_2:7194351-7194370 | None:intergenic | 50.0% | |
| GAAATTCAGGCAACCGTGCA+GGG | - | chr5_2:7194352-7194371 | None:intergenic | 50.0% | |
| TGAAATTCAGGCAACCGTGC+AGG | - | chr5_2:7194353-7194372 | None:intergenic | 50.0% | |
| TGTAGCAGATGTGTGCTGCA+TGG | - | chr5_2:7194661-7194680 | None:intergenic | 50.0% | |
| ! | TTTGGAGCACCCATCACAGA+TGG | - | chr5_2:7195015-7195034 | None:intergenic | 50.0% |
| ATGGGTGCTCCAAAGCATGA+TGG | + | chr5_2:7195021-7195040 | Msa0753550:CDS | 50.0% | |
| !! | CCACCTATATGTGCTGACTG+CGG | - | chr5_2:7195226-7195245 | None:intergenic | 50.0% |
| ACAGGAAACCACTGTGCCAA+TGG | + | chr5_2:7195751-7195770 | Msa0753550:CDS | 50.0% | |
| TCACTTTGTCACCCCTTGGA+TGG | + | chr5_2:7195785-7195804 | Msa0753550:intron | 50.0% | |
| TGACTGGGCTCCAGATGTTA+GGG | - | chr5_2:7196086-7196105 | None:intergenic | 50.0% | |
| TTGACTGGGCTCCAGATGTT+AGG | - | chr5_2:7196087-7196106 | None:intergenic | 50.0% | |
| ! | TCTGGAGCCCAGTCAAATAG+TGG | + | chr5_2:7196091-7196110 | Msa0753550:CDS | 50.0% |
| GCAAATTCAGAGAGGGAGTG+AGG | + | chr5_2:7196437-7196456 | Msa0753550:CDS | 50.0% | |
| GCTTCAGGAACCTGGGAATT+CGG | + | chr5_2:7196571-7196590 | Msa0753550:intron | 50.0% | |
| CTTCGATTGTAGTTGTCGCC+TGG | - | chr5_2:7196603-7196622 | None:intergenic | 50.0% | |
| GGACCTGAGTTCCACTTTCT+AGG | - | chr5_2:7196827-7196846 | None:intergenic | 50.0% | |
| AAGTGGAACTCAGGTCCACT+CGG | + | chr5_2:7196830-7196849 | Msa0753550:three_prime_UTR | 50.0% | |
| !! | TCGAACCAGCGTTCAGGTTG+TGG | - | chr5_2:7191785-7191804 | None:intergenic | 55.0% |
| !! | GTTTCTAGCTCGGGCACTCT+AGG | - | chr5_2:7194007-7194026 | None:intergenic | 55.0% |
| GCAGGGGTCCTCTTATGAAG+AGG | - | chr5_2:7194335-7194354 | None:intergenic | 55.0% | |
| ! | TGGCCCTCTCCGATGTTTTG+AGG | - | chr5_2:7194641-7194660 | None:intergenic | 55.0% |
| TCTGCACAGGCCATCTGTGA+TGG | + | chr5_2:7195002-7195021 | Msa0753550:intron | 55.0% | |
| CTGCACAGGCCATCTGTGAT+GGG | + | chr5_2:7195003-7195022 | Msa0753550:intron | 55.0% | |
| !! | CCTATATGTGCTGACTGCGG+TGG | - | chr5_2:7195223-7195242 | None:intergenic | 55.0% |
| CCACCGCAGTCAGCACATAT+AGG | + | chr5_2:7195220-7195239 | Msa0753550:intron | 55.0% | |
| CCGCAGTCAGCACATATAGG+TGG | + | chr5_2:7195223-7195242 | Msa0753550:intron | 55.0% | |
| CCAACTCACCATTGGCACAG+TGG | - | chr5_2:7195762-7195781 | None:intergenic | 55.0% | |
| CCACTGTGCCAATGGTGAGT+TGG | + | chr5_2:7195759-7195778 | Msa0753550:intron | 55.0% | |
| GAGGGTTGCATCAACGAAGC+TGG | + | chr5_2:7196456-7196475 | Msa0753550:CDS | 55.0% | |
| !! | CCATCGGCTCTCTAGTTAGC+CGG | - | chr5_2:7196666-7196685 | None:intergenic | 55.0% |
| AGTGGAACTCAGGTCCACTC+GGG | + | chr5_2:7196831-7196850 | Msa0753550:three_prime_UTR | 55.0% | |
| GCGGTTTCGAACCAGCGTTC+AGG | - | chr5_2:7191791-7191810 | None:intergenic | 60.0% | |
| !! | GAACGCTGGTTCGAAACCGC+CGG | + | chr5_2:7191791-7191810 | Msa0753550:CDS | 60.0% |
| AGAGGGTGGTCTCTTGCGCA+AGG | + | chr5_2:7193295-7193314 | Msa0753550:CDS | 60.0% | |
| CTGGCAGTCACCGAATTCCC+AGG | - | chr5_2:7196584-7196603 | None:intergenic | 60.0% | |
| ! | CTGGGAATTCGGTGACTGCC+AGG | + | chr5_2:7196582-7196601 | Msa0753550:exon | 60.0% |
| CCGGCTAACTAGAGAGCCGA+TGG | + | chr5_2:7196663-7196682 | Msa0753550:three_prime_UTR | 60.0% | |
| GTGGAACTCAGGTCCACTCG+GGG | + | chr5_2:7196832-7196851 | Msa0753550:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 7191556 | 7196910 | 7191556 | ID=Msa0753550;Name=Msa0753550 |
| chr5_2 | mRNA | 7191556 | 7196910 | 7191556 | ID=Msa0753550-mRNA-1;Parent=Msa0753550;Name=Msa0753550-mRNA-1;_AED=0.16;_eAED=0.16;_QI=70|1|1|1|0.94|1|18|314|500 |
| chr5_2 | exon | 7191556 | 7191830 | 7191556 | ID=Msa0753550-mRNA-1:exon:3219;Parent=Msa0753550-mRNA-1 |
| chr5_2 | exon | 7191930 | 7192025 | 7191930 | ID=Msa0753550-mRNA-1:exon:3220;Parent=Msa0753550-mRNA-1 |
| chr5_2 | exon | 7192127 | 7192201 | 7192127 | ID=Msa0753550-mRNA-1:exon:3221;Parent=Msa0753550-mRNA-1 |
| chr5_2 | exon | 7192790 | 7192934 | 7192790 | ID=Msa0753550-mRNA-1:exon:3222;Parent=Msa0753550-mRNA-1 |
| chr5_2 | exon | 7193205 | 7193316 | 7193205 | ID=Msa0753550-mRNA-1:exon:3223;Parent=Msa0753550-mRNA-1 |
| chr5_2 | exon | 7193510 | 7193560 | 7193510 | ID=Msa0753550-mRNA-1:exon:3224;Parent=Msa0753550-mRNA-1 |
| chr5_2 | exon | 7193953 | 7194050 | 7193953 | ID=Msa0753550-mRNA-1:exon:3225;Parent=Msa0753550-mRNA-1 |
| chr5_2 | exon | 7194141 | 7194216 | 7194141 | ID=Msa0753550-mRNA-1:exon:3226;Parent=Msa0753550-mRNA-1 |
| chr5_2 | exon | 7194311 | 7194373 | 7194311 | ID=Msa0753550-mRNA-1:exon:3227;Parent=Msa0753550-mRNA-1 |
| chr5_2 | exon | 7194630 | 7194716 | 7194630 | ID=Msa0753550-mRNA-1:exon:3228;Parent=Msa0753550-mRNA-1 |
| chr5_2 | exon | 7194868 | 7194926 | 7194868 | ID=Msa0753550-mRNA-1:exon:3229;Parent=Msa0753550-mRNA-1 |
| chr5_2 | exon | 7195011 | 7195089 | 7195011 | ID=Msa0753550-mRNA-1:exon:3230;Parent=Msa0753550-mRNA-1 |
| chr5_2 | exon | 7195707 | 7195772 | 7195707 | ID=Msa0753550-mRNA-1:exon:3231;Parent=Msa0753550-mRNA-1 |
| chr5_2 | exon | 7195863 | 7195925 | 7195863 | ID=Msa0753550-mRNA-1:exon:3232;Parent=Msa0753550-mRNA-1 |
| chr5_2 | exon | 7196079 | 7196153 | 7196079 | ID=Msa0753550-mRNA-1:exon:3233;Parent=Msa0753550-mRNA-1 |
| chr5_2 | exon | 7196246 | 7196290 | 7196246 | ID=Msa0753550-mRNA-1:exon:3234;Parent=Msa0753550-mRNA-1 |
| chr5_2 | exon | 7196411 | 7196499 | 7196411 | ID=Msa0753550-mRNA-1:exon:3235;Parent=Msa0753550-mRNA-1 |
| chr5_2 | exon | 7196578 | 7196910 | 7196578 | ID=Msa0753550-mRNA-1:exon:3236;Parent=Msa0753550-mRNA-1 |
| chr5_2 | five_prime_UTR | 7191556 | 7191625 | 7191556 | ID=Msa0753550-mRNA-1:five_prime_utr;Parent=Msa0753550-mRNA-1 |
| chr5_2 | CDS | 7191626 | 7191830 | 7191626 | ID=Msa0753550-mRNA-1:cds;Parent=Msa0753550-mRNA-1 |
| chr5_2 | CDS | 7191930 | 7192025 | 7191930 | ID=Msa0753550-mRNA-1:cds;Parent=Msa0753550-mRNA-1 |
| chr5_2 | CDS | 7192127 | 7192201 | 7192127 | ID=Msa0753550-mRNA-1:cds;Parent=Msa0753550-mRNA-1 |
| chr5_2 | CDS | 7192790 | 7192934 | 7192790 | ID=Msa0753550-mRNA-1:cds;Parent=Msa0753550-mRNA-1 |
| chr5_2 | CDS | 7193205 | 7193316 | 7193205 | ID=Msa0753550-mRNA-1:cds;Parent=Msa0753550-mRNA-1 |
| chr5_2 | CDS | 7193510 | 7193560 | 7193510 | ID=Msa0753550-mRNA-1:cds;Parent=Msa0753550-mRNA-1 |
| chr5_2 | CDS | 7193953 | 7194050 | 7193953 | ID=Msa0753550-mRNA-1:cds;Parent=Msa0753550-mRNA-1 |
| chr5_2 | CDS | 7194141 | 7194216 | 7194141 | ID=Msa0753550-mRNA-1:cds;Parent=Msa0753550-mRNA-1 |
| chr5_2 | CDS | 7194311 | 7194373 | 7194311 | ID=Msa0753550-mRNA-1:cds;Parent=Msa0753550-mRNA-1 |
| chr5_2 | CDS | 7194630 | 7194716 | 7194630 | ID=Msa0753550-mRNA-1:cds;Parent=Msa0753550-mRNA-1 |
| chr5_2 | CDS | 7194868 | 7194926 | 7194868 | ID=Msa0753550-mRNA-1:cds;Parent=Msa0753550-mRNA-1 |
| chr5_2 | CDS | 7195011 | 7195089 | 7195011 | ID=Msa0753550-mRNA-1:cds;Parent=Msa0753550-mRNA-1 |
| chr5_2 | CDS | 7195707 | 7195772 | 7195707 | ID=Msa0753550-mRNA-1:cds;Parent=Msa0753550-mRNA-1 |
| chr5_2 | CDS | 7195863 | 7195925 | 7195863 | ID=Msa0753550-mRNA-1:cds;Parent=Msa0753550-mRNA-1 |
| chr5_2 | CDS | 7196079 | 7196153 | 7196079 | ID=Msa0753550-mRNA-1:cds;Parent=Msa0753550-mRNA-1 |
| chr5_2 | CDS | 7196246 | 7196290 | 7196246 | ID=Msa0753550-mRNA-1:cds;Parent=Msa0753550-mRNA-1 |
| chr5_2 | CDS | 7196411 | 7196499 | 7196411 | ID=Msa0753550-mRNA-1:cds;Parent=Msa0753550-mRNA-1 |
| chr5_2 | CDS | 7196578 | 7196596 | 7196578 | ID=Msa0753550-mRNA-1:cds;Parent=Msa0753550-mRNA-1 |
| chr5_2 | three_prime_UTR | 7196597 | 7196910 | 7196597 | ID=Msa0753550-mRNA-1:three_prime_utr;Parent=Msa0753550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
