AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1078860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078860 MtrunA17_Chr7g0263671 96.419 754 23 2 1 754 1 750 0.0 1450
Msa1078860 MtrunA17_Chr1g0181631 46.861 446 208 9 220 649 46 478 7.26e-56 199
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078860 AT3G53320.1 35.430 302 153 11 19 297 16 298 3.55e-25 111
Msa1078860 AT2G37070.2 41.606 137 57 7 19 144 18 142 6.99e-16 81.6
Msa1078860 AT2G37070.1 41.606 137 57 7 19 144 18 142 8.40e-16 81.6

Find 166 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCGTCTAGCTCTGGGATTC+TGG 0.097225 7_2:+77876372 Msa1078860:CDS
GGTAGCTGCACTAGCAATTT+TGG 0.153480 7_2:-77876344 None:intergenic
TTTCTTCTTGCGGAATTAAA+TGG 0.190171 7_2:-77877755 None:intergenic
TCCAATTACCACCAAAATTC+AGG 0.233828 7_2:+77875770 Msa1078860:CDS
TCAAAATATCCGATGCTAAA+AGG 0.236588 7_2:-77879370 None:intergenic
TGACTGGCCAGGAGTTAATT+TGG 0.237626 7_2:-77877660 None:intergenic
GTGTTAATGTTTAGGGGTTT+TGG 0.243930 7_2:+77876123 Msa1078860:intron
AACACTAAGCGATGCTCTTT+TGG 0.247393 7_2:-77877420 None:intergenic
ACAAACCTTTGCTTAATTCT+TGG 0.254223 7_2:-77878990 None:intergenic
TCAAGAAACAAAACTGAATC+TGG 0.266121 7_2:+77877845 Msa1078860:CDS
CCAAAGATTGGTTTCTTTGA+TGG 0.281624 7_2:+77878214 Msa1078860:CDS
GTGTCAAGAGCATCTGTTAT+TGG 0.287645 7_2:+77877599 Msa1078860:CDS
CTTGCAGCTTTGCTTTGATT+TGG 0.294963 7_2:-77878537 None:intergenic
CCAGCTGTTGCGAGAGTAAT+CGG 0.318243 7_2:+77877112 Msa1078860:CDS
TAAGTTGCTACCGGAAGATT+TGG 0.323444 7_2:-77877711 None:intergenic
AATGATTCATCAATATGATT+TGG 0.323598 7_2:-77878619 None:intergenic
CCAGCTCCTGCAAAACCTTC+AGG 0.325778 7_2:+77878175 Msa1078860:CDS
TGAAACTGAAAGTGTTGATT+TGG 0.331552 7_2:+77876267 Msa1078860:CDS
CCATACCATTGGATTTATCT+TGG 0.343022 7_2:-77878927 None:intergenic
TGTGAATCCATTTCGACCTT+AGG 0.344717 7_2:+77876226 Msa1078860:CDS
GACAAGGCAAAACACATAAA+TGG 0.355451 7_2:+77877464 Msa1078860:CDS
AGCGAAGCCCGATGGTGTTC+TGG 0.355565 7_2:-77877822 None:intergenic
TCGTCTAGCTCTGGGATTCT+GGG 0.368045 7_2:+77876373 Msa1078860:CDS
CCCAGAGCTAGACGACATTC+TGG 0.369940 7_2:-77876365 None:intergenic
CAAAGATTGGTTTCTTTGAT+GGG 0.372758 7_2:+77878215 Msa1078860:CDS
CACCCCTACCAGCATTGATA+TGG 0.384562 7_2:+77879032 Msa1078860:CDS
AGCAACTTATCTGATAATAT+TGG 0.387973 7_2:+77877725 Msa1078860:CDS
TCCGATGCTAAAAGGATTCA+TGG 0.388467 7_2:-77879362 None:intergenic
ACCAGAATGTCGTCTAGCTC+TGG 0.390989 7_2:+77876364 Msa1078860:CDS
CGACTGCCTTCGCCAAAGAT+TGG 0.391284 7_2:+77878202 Msa1078860:CDS
CCATCAAAGAAACCAATCTT+TGG 0.394047 7_2:-77878214 None:intergenic
GGGCAGGAGGCTCAGCAAAA+TGG 0.394670 7_2:+77878103 Msa1078860:CDS
TATACATCCTCTTCAATCCT+TGG 0.397018 7_2:-77876196 None:intergenic
GCAAGAAGAAACGTTATTGC+TGG 0.399942 7_2:+77877767 Msa1078860:CDS
GAATTTGCACTAGGCTTTGT+TGG 0.406749 7_2:-77877386 None:intergenic
ATCAACCAACTTACCTGTGC+TGG 0.411015 7_2:+77879146 Msa1078860:CDS
TTGGATAATATTGTGGACTT+AGG 0.412150 7_2:-77877641 None:intergenic
TCTTTCGCAGATTGAACTTA+GGG 0.413908 7_2:-77875977 None:intergenic
TGGTGGTAATTGGAAGAAAC+GGG 0.413945 7_2:-77875761 None:intergenic
TGTTTCAGAAATTTGAACTT+AGG 0.415299 7_2:-77875601 None:intergenic
TACATCACTGTCGCATGAAA+TGG 0.416230 7_2:+77878729 Msa1078860:CDS
TCTTTGACATCGTTGTTTAT+CGG 0.416620 7_2:-77875686 None:intergenic
TTGGTGGTAATTGGAAGAAA+CGG 0.418940 7_2:-77875762 None:intergenic
CTCTTTCGCAGATTGAACTT+AGG 0.423818 7_2:-77875978 None:intergenic
TCAGCAACTTCCAAATCTTC+CGG 0.426512 7_2:+77877701 Msa1078860:CDS
ATCGCTCCCTAAGGTCGAAA+TGG 0.427949 7_2:-77876233 None:intergenic
GTATAAATTCTCAGATTTCT+CGG 0.431931 7_2:+77878062 Msa1078860:CDS
TTTGGAGGGTGATTTGTTTG+AGG 0.435278 7_2:+77876285 Msa1078860:CDS
CCCTCCCGCCAGAACACCAT+CGG 0.440512 7_2:+77877814 Msa1078860:CDS
GTGAATCCATTTCGACCTTA+GGG 0.441776 7_2:+77876227 Msa1078860:CDS
CATCAATATGATTTGGATGT+GGG 0.447348 7_2:-77878612 None:intergenic
GAACTATCACACATGTGTTT+AGG 0.449363 7_2:-77877977 None:intergenic
GAAGATTTAAATCCATGTAA+TGG 0.458165 7_2:+77879449 Msa1078860:three_prime_UTR
AGCAATAACGTTTCTTCTTG+CGG 0.458182 7_2:-77877765 None:intergenic
AACACATGTGTGATAGTTCA+AGG 0.461632 7_2:+77877981 Msa1078860:CDS
CATCTGTTATTGGAGGTTCA+AGG 0.462665 7_2:+77877609 Msa1078860:CDS
TTTGTAATGCTTTCCAGCAC+AGG 0.466793 7_2:-77879159 None:intergenic
ATCAACACTTTCAGTTTCAA+AGG 0.467451 7_2:-77876263 None:intergenic
TGAAGGCATCACCTGCTTCA+AGG 0.467661 7_2:+77877083 Msa1078860:CDS
CGGCGAAAGTGATGTGAAGA+AGG 0.479720 7_2:-77875636 None:intergenic
TGTGGTATTTGTGTAAAAGT+AGG 0.484204 7_2:-77877157 None:intergenic
CTGGCGGGAGGGCGAGATGA+GGG 0.488219 7_2:-77877803 None:intergenic
TTGTCTTGGTTGATATTGAC+TGG 0.491915 7_2:-77877676 None:intergenic
GAACAAGAAGAAAATGAACT+TGG 0.498335 7_2:+77879391 Msa1078860:three_prime_UTR
ATTCGATAACTCCATACCAT+TGG 0.498382 7_2:-77878938 None:intergenic
GCTTTCCAGCACAGGTAAGT+TGG 0.501226 7_2:-77879151 None:intergenic
GAATTATCAGTCAAAGTGTA+AGG 0.507200 7_2:+77878125 Msa1078860:CDS
ATCTGCGAAAGAGTTTAGCT+TGG 0.507998 7_2:+77875988 Msa1078860:CDS
ATCTGTTATTGGAGGTTCAA+GGG 0.509068 7_2:+77877610 Msa1078860:CDS
TCTGCGAAAGAGTTTAGCTT+GGG 0.510391 7_2:+77875989 Msa1078860:CDS
TTCTTTGTTTCAGATGTCTG+AGG 0.511993 7_2:-77875948 None:intergenic
CCGCTAGTTCTGTTAGTGAC+TGG 0.512313 7_2:+77877924 Msa1078860:CDS
AATGTGACTTGGCGAATAGA+TGG 0.518814 7_2:-77875504 None:intergenic
CAAGAAACAAAACTGAATCT+GGG 0.519601 7_2:+77877846 Msa1078860:CDS
TCATCAATATGATTTGGATG+TGG 0.521364 7_2:-77878613 None:intergenic
CCGATTACTCTCGCAACAGC+TGG 0.522284 7_2:-77877112 None:intergenic
TTGGTTGATATTGACTGGCC+AGG 0.525155 7_2:-77877671 None:intergenic
AGTTAATTTGGATAATATTG+TGG 0.526161 7_2:-77877648 None:intergenic
GGCTTTGTTGGCACCTTCGA+CGG 0.527206 7_2:-77877374 None:intergenic
CCAAGATAAATCCAATGGTA+TGG 0.527305 7_2:+77878927 Msa1078860:CDS
TAGGGGTGACACATTGATAC+GGG 0.528043 7_2:-77879017 None:intergenic
GCTGGTAGATTCCTTGAAGC+AGG 0.530424 7_2:-77877094 None:intergenic
TCCACATATCATAAGCGAAA+AGG 0.535480 7_2:+77877442 Msa1078860:CDS
GAACATAAATTCCAAGACTC+AGG 0.536096 7_2:+77878855 Msa1078860:CDS
TATTGGAGGTTCAAGGGGTA+CGG 0.538224 7_2:+77877616 Msa1078860:CDS
GCTAGAGTTACTATCAATGC+TGG 0.539482 7_2:-77878005 None:intergenic
ATCTATTTCAAAGCCGTCGA+AGG 0.540506 7_2:+77877361 Msa1078860:CDS
GGCAAATAAATACCATTACA+TGG 0.542601 7_2:-77879461 None:intergenic
CCAGAATGTCGTCTAGCTCT+GGG 0.542743 7_2:+77876365 Msa1078860:CDS
AAGCCCGATGGTGTTCTGGC+GGG 0.543148 7_2:-77877818 None:intergenic
TATCGGAGAAGCGTCGGAGT+CGG 0.545556 7_2:-77875669 None:intergenic
TGACTCCCTCCTTGTAGCGA+CGG 0.546341 7_2:-77877339 None:intergenic
TCTTTGGCGAAGGCAGTCGC+AGG 0.546881 7_2:-77878198 None:intergenic
AACTGAAAGTGTTGATTTGG+AGG 0.547878 7_2:+77876270 Msa1078860:CDS
TCTGGCGGGAGGGCGAGATG+AGG 0.548702 7_2:-77877804 None:intergenic
TATAATTGAAGGTGTTGAGA+AGG 0.549903 7_2:+77876165 Msa1078860:CDS
GTAGGGGTGACACATTGATA+CGG 0.550011 7_2:-77879018 None:intergenic
TGTTAGTGACTGGTCTTCAG+AGG 0.550980 7_2:+77877934 Msa1078860:CDS
GACTCCCTCCTTGTAGCGAC+GGG 0.552128 7_2:-77877338 None:intergenic
TGCCATATCAATGCTGGTAG+GGG 0.552572 7_2:-77879034 None:intergenic
ATATTATCCAAATTAACTCC+TGG 0.553361 7_2:+77877653 Msa1078860:CDS
TCAGACACTAATGCAGATCA+AGG 0.554880 7_2:+77878040 Msa1078860:CDS
ACTGACCCGTGTCGATCACC+AGG 0.556843 7_2:+77878777 Msa1078860:CDS
TGATAGTAACTCTAGCAGAA+AGG 0.557439 7_2:+77878012 Msa1078860:CDS
AACTTAGGAGTAGCGGCTAG+TGG 0.558153 7_2:-77875586 None:intergenic
GAGTTAACTAGTATAATTGA+AGG 0.559085 7_2:+77876154 Msa1078860:CDS
TTGCCATATCAATGCTGGTA+GGG 0.559511 7_2:-77879035 None:intergenic
GGTTAAACTATCGCTCCCTA+AGG 0.567132 7_2:-77876242 None:intergenic
CAGCTGTTGCGAGAGTAATC+GGG 0.570911 7_2:+77877113 Msa1078860:CDS
ATTATCAGATAAGTTGCTAC+CGG 0.571364 7_2:-77877720 None:intergenic
CACTGTCCTGGTGATCGACA+CGG 0.577273 7_2:-77878783 None:intergenic
TTTCTTGAAGCGAAGCCCGA+TGG 0.578631 7_2:-77877830 None:intergenic
CAGTCACTAACAGAACTAGC+GGG 0.579052 7_2:-77877923 None:intergenic
ACTGTCCTGGTGATCGACAC+GGG 0.579748 7_2:-77878782 None:intergenic
GAAATTGTGGAATTTGCACT+AGG 0.580738 7_2:-77877395 None:intergenic
CTTCTTCACATCACTTTCGC+CGG 0.581138 7_2:+77875637 Msa1078860:five_prime_UTR
AGAACAAGTACTTAAAGACT+TGG 0.583177 7_2:-77879289 None:intergenic
GGATTTCAAAGACAAACAAA+AGG 0.584203 7_2:-77875564 None:intergenic
CCGATGGTGTTCTGGCGGGA+GGG 0.584412 7_2:-77877814 None:intergenic
GGCTTGCTAAAACATGGAGC+AGG 0.585668 7_2:+77878499 Msa1078860:CDS
AAAGATTGGTTTCTTTGATG+GGG 0.587295 7_2:+77878216 Msa1078860:CDS
TGGTGATCGACACGGGTCAG+TGG 0.589738 7_2:-77878775 None:intergenic
AAGTGTAAGGACTGCTTCTG+TGG 0.593654 7_2:+77878138 Msa1078860:CDS
GCGGGAGGGCGAGATGAGGG+AGG 0.596464 7_2:-77877800 None:intergenic
CCACACTCTTCTGTGTCTCA+CGG 0.596515 7_2:+77878478 Msa1078860:CDS
ACTTAGGAGTAGCGGCTAGT+GGG 0.597098 7_2:-77875585 None:intergenic
AAGAAACCAATCTTTGGCGA+AGG 0.598647 7_2:-77878208 None:intergenic
AAATTTGAACTTAGGAGTAG+CGG 0.599706 7_2:-77875593 None:intergenic
GAAGGCAGTCGCAGGCCTGA+AGG 0.602125 7_2:-77878190 None:intergenic
TCTGTTATTGGAGGTTCAAG+GGG 0.602408 7_2:+77877611 Msa1078860:CDS
GATTGTTTGATCGAACAAGT+TGG 0.602661 7_2:+77878826 Msa1078860:CDS
GGCGAAAGTGATGTGAAGAA+GGG 0.603581 7_2:-77875635 None:intergenic
GGGATCGAGAAGAGAATCAT+CGG 0.607587 7_2:-77875741 None:intergenic
TCAAGAGCATCTGTTATTGG+AGG 0.609151 7_2:+77877602 Msa1078860:CDS
GTTGTTTATCGGAGAAGCGT+CGG 0.613172 7_2:-77875675 None:intergenic
GATTCATGGCAATGAACCCA+AGG 0.615849 7_2:-77879348 None:intergenic
AACATTACCAAGGATTGAAG+AGG 0.617361 7_2:+77876189 Msa1078860:CDS
AGCTGCTAGAAAGGTTGGCG+TGG 0.617848 7_2:+77876508 Msa1078860:intron
TGGCGTGGTTCCTCGCAACA+AGG 0.620806 7_2:+77876523 Msa1078860:CDS
TGAAGTTGCCATATCAATGC+TGG 0.621101 7_2:-77879040 None:intergenic
GAAGCCCGATGGTGTTCTGG+CGG 0.624470 7_2:-77877819 None:intergenic
AAAGCCCGTCGCTACAAGGA+GGG 0.625211 7_2:+77877334 Msa1078860:intron
AGCTTCCAAGATAAATCCAA+TGG 0.625508 7_2:+77878922 Msa1078860:CDS
ATGTAAGTTACCTTGTTGCG+AGG 0.626684 7_2:-77876533 None:intergenic
TCCTCAGTGCGCACTCCACG+TGG 0.629069 7_2:+77878445 Msa1078860:CDS
TATCATAAGCGAAAAGGACA+AGG 0.631796 7_2:+77877448 Msa1078860:CDS
CGTCTAGCTCTGGGATTCTG+GGG 0.633762 7_2:+77876374 Msa1078860:CDS
TCAGTGCGCACTCCACGTGG+TGG 0.638649 7_2:+77878448 Msa1078860:CDS
CCAGTCACTAACAGAACTAG+CGG 0.641140 7_2:-77877924 None:intergenic
GGAGCAGGAAGTTCAAGTGA+AGG 0.642645 7_2:+77878514 Msa1078860:CDS
TGTGGTTGCGCTCCACCACG+TGG 0.647882 7_2:-77878460 None:intergenic
TCTCACGGCTTGCTAAAACA+TGG 0.649356 7_2:+77878493 Msa1078860:CDS
TATCATGATAGACACTGTCC+TGG 0.654242 7_2:-77878795 None:intergenic
TTGATATGGCAACTTCAGCA+AGG 0.657298 7_2:+77879046 Msa1078860:CDS
GTTGCCATATCAATGCTGGT+AGG 0.660587 7_2:-77879036 None:intergenic
ACTGAAAGTGTTGATTTGGA+GGG 0.665976 7_2:+77876271 Msa1078860:CDS
AGTCACTAACAGAACTAGCG+GGG 0.666195 7_2:-77877922 None:intergenic
AAGGCAAAACACATAAATGG+TGG 0.672855 7_2:+77877467 Msa1078860:CDS
AAAAGCCCGTCGCTACAAGG+AGG 0.677449 7_2:+77877333 Msa1078860:intron
AAGACTCAGGAAAAGATCAA+CGG 0.677530 7_2:+77878868 Msa1078860:CDS
CCGTGAGACACAGAAGAGTG+TGG 0.683825 7_2:-77878478 None:intergenic
TTGAGAAGGAAACATTACCA+AGG 0.691255 7_2:+77876179 Msa1078860:CDS
GTCACTAACAGAACTAGCGG+GGG 0.703043 7_2:-77877921 None:intergenic
TATGGAGTTATCGAATCACA+AGG 0.703342 7_2:+77878945 Msa1078860:CDS
AGGGGTGACACATTGATACG+GGG 0.749012 7_2:-77879016 None:intergenic
ACCACGTGGAGTGCGCACTG+AGG 0.755457 7_2:-77878446 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGTTTGAAAAAATATAT+TGG - chr7_2:77875538-77875557 None:intergenic 10.0%
!! AAAAAAAGAAATGAAAAATT+AGG - chr7_2:77875808-77875827 None:intergenic 10.0%
!!! TTTTTCAATTTCTTAAAAAT+AGG + chr7_2:77876057-77876076 Msa1078860:intron 10.0%
!!! TTGATTTATTTATTTTCTAT+TGG + chr7_2:77876101-77876120 Msa1078860:intron 10.0%
!!! TCTTCAAAATTTTTTGAATT+CGG - chr7_2:77875894-77875913 None:intergenic 15.0%
!!! ATTTTTATCGTTTATCAAAA+TGG - chr7_2:77877031-77877050 None:intergenic 15.0%
!!! CAACAAAAATACTATAGTTT+TGG - chr7_2:77876640-77876659 None:intergenic 20.0%
!!! TTTCAATTGATTTTAGATGA+AGG + chr7_2:77877066-77877085 Msa1078860:intron 20.0%
!!! ATCGTAAATGAAATTTTAAG+TGG + chr7_2:77877262-77877281 Msa1078860:intron 20.0%
!!! AGTTAATTTGGATAATATTG+TGG - chr7_2:77877651-77877670 None:intergenic 20.0%
!! ATATGTGATTCTATTAACTA+TGG + chr7_2:77878375-77878394 Msa1078860:intron 20.0%
!! TAAAGAGATGAAGATTAAAT+TGG - chr7_2:77878414-77878433 None:intergenic 20.0%
!! AATGATTCATCAATATGATT+TGG - chr7_2:77878622-77878641 None:intergenic 20.0%
! TGTTTCAGAAATTTGAACTT+AGG - chr7_2:77875604-77875623 None:intergenic 25.0%
!! AAAAATGTGAACCTGAATTT+TGG - chr7_2:77875784-77875803 None:intergenic 25.0%
! AAGTTTCATTCAGATTCAAT+TGG - chr7_2:77875841-77875860 None:intergenic 25.0%
!!! TTCTATTGGTGTTAATGTTT+AGG + chr7_2:77876115-77876134 Msa1078860:intron 25.0%
!!! TCTATTGGTGTTAATGTTTA+GGG + chr7_2:77876116-77876135 Msa1078860:intron 25.0%
! GAGTTAACTAGTATAATTGA+AGG + chr7_2:77876154-77876173 Msa1078860:CDS 25.0%
! ATAATGCTTATTCAAAACTG+AGG + chr7_2:77876429-77876448 Msa1078860:intron 25.0%
! TAATGCTTATTCAAAACTGA+GGG + chr7_2:77876430-77876449 Msa1078860:intron 25.0%
! ATCATGTTGTCTCAATAAAA+AGG - chr7_2:77876684-77876703 None:intergenic 25.0%
! TATCAAAATGGAAAGCAATT+AGG - chr7_2:77877019-77877038 None:intergenic 25.0%
! TAAGTTAGTATAACTAGGAA+AGG - chr7_2:77877213-77877232 None:intergenic 25.0%
! AATCGTAAGTTAGTATAACT+AGG - chr7_2:77877218-77877237 None:intergenic 25.0%
!!! TTAATCCTCATTTTTGCATA+AGG + chr7_2:77877524-77877543 Msa1078860:intron 25.0%
! AAATTTACTACAACTCAGAA+AGG - chr7_2:77877554-77877573 None:intergenic 25.0%
! ATATTATCCAAATTAACTCC+TGG + chr7_2:77877653-77877672 Msa1078860:CDS 25.0%
! AGCAACTTATCTGATAATAT+TGG + chr7_2:77877725-77877744 Msa1078860:CDS 25.0%
! GTATAAATTCTCAGATTTCT+CGG + chr7_2:77878062-77878081 Msa1078860:CDS 25.0%
! AATTTGTATCATTATGACCT+TGG + chr7_2:77878306-77878325 Msa1078860:intron 25.0%
!!! TCTAGTTTTTTGTTTGCAAT+TGG - chr7_2:77878580-77878599 None:intergenic 25.0%
!!! TTGCTTAATTCTTGGTTTTT+AGG - chr7_2:77878985-77879004 None:intergenic 25.0%
! AAAAACCAAGAATTAAGCAA+AGG + chr7_2:77878985-77879004 Msa1078860:CDS 25.0%
!! AAAAGATTCATTTTGCAACA+TGG + chr7_2:77879083-77879102 Msa1078860:CDS 25.0%
! GAAGATTTAAATCCATGTAA+TGG + chr7_2:77879449-77879468 Msa1078860:three_prime_UTR 25.0%
TGGAAAGAAAAAATGTGACT+TGG - chr7_2:77875518-77875537 None:intergenic 30.0%
GGATTTCAAAGACAAACAAA+AGG - chr7_2:77875567-77875586 None:intergenic 30.0%
AAATTTGAACTTAGGAGTAG+CGG - chr7_2:77875596-77875615 None:intergenic 30.0%
TCTTTGACATCGTTGTTTAT+CGG - chr7_2:77875689-77875708 None:intergenic 30.0%
TGCTACAAAAATTGAACAGT+GGG + chr7_2:77875917-77875936 Msa1078860:CDS 30.0%
!! CTATTGGTGTTAATGTTTAG+GGG + chr7_2:77876117-77876136 Msa1078860:intron 30.0%
!! TATAATTGAAGGTGTTGAGA+AGG + chr7_2:77876165-77876184 Msa1078860:CDS 30.0%
ATCAACACTTTCAGTTTCAA+AGG - chr7_2:77876266-77876285 None:intergenic 30.0%
!! TGAAACTGAAAGTGTTGATT+TGG + chr7_2:77876267-77876286 Msa1078860:CDS 30.0%
!!! TTACATCCCAAGTTTTGAAA+GGG - chr7_2:77876867-77876886 None:intergenic 30.0%
!!! ATTACATCCCAAGTTTTGAA+AGG - chr7_2:77876868-77876887 None:intergenic 30.0%
! AGAAGTGCAATATCAATTCT+AGG + chr7_2:77876946-77876965 Msa1078860:intron 30.0%
!! TGCAATATCAATTCTAGGAT+AGG + chr7_2:77876951-77876970 Msa1078860:intron 30.0%
TGTGGTATTTGTGTAAAAGT+AGG - chr7_2:77877160-77877179 None:intergenic 30.0%
! TACTTTTACACAAATACCAC+AGG + chr7_2:77877159-77877178 Msa1078860:CDS 30.0%
TTAAATTAGTTGCATACCTG+TGG - chr7_2:77877178-77877197 None:intergenic 30.0%
TTGGATAATATTGTGGACTT+AGG - chr7_2:77877644-77877663 None:intergenic 30.0%
ATTATCAGATAAGTTGCTAC+CGG - chr7_2:77877723-77877742 None:intergenic 30.0%
TTTCTTCTTGCGGAATTAAA+TGG - chr7_2:77877758-77877777 None:intergenic 30.0%
TCAAGAAACAAAACTGAATC+TGG + chr7_2:77877845-77877864 Msa1078860:CDS 30.0%
CAAGAAACAAAACTGAATCT+GGG + chr7_2:77877846-77877865 Msa1078860:CDS 30.0%
!!! GGAGTGATTTTAACTTAGAA+GGG + chr7_2:77878083-77878102 Msa1078860:CDS 30.0%
GAATTATCAGTCAAAGTGTA+AGG + chr7_2:77878125-77878144 Msa1078860:CDS 30.0%
!! CAAAGATTGGTTTCTTTGAT+GGG + chr7_2:77878215-77878234 Msa1078860:CDS 30.0%
!! AAAGATTGGTTTCTTTGATG+GGG + chr7_2:77878216-77878235 Msa1078860:CDS 30.0%
TATGTCAAACATAAAGAAGG+CGG - chr7_2:77878251-77878270 None:intergenic 30.0%
GACTATGTCAAACATAAAGA+AGG - chr7_2:77878254-77878273 None:intergenic 30.0%
ATAGAATCACATATTACACG+TGG - chr7_2:77878369-77878388 None:intergenic 30.0%
TAATCTTCATCTCTTTATGC+AGG + chr7_2:77878417-77878436 Msa1078860:intron 30.0%
! CATCAATATGATTTGGATGT+GGG - chr7_2:77878615-77878634 None:intergenic 30.0%
! TCATCAATATGATTTGGATG+TGG - chr7_2:77878616-77878635 None:intergenic 30.0%
ACAAACCTTTGCTTAATTCT+TGG - chr7_2:77878993-77879012 None:intergenic 30.0%
! AATGAATCTTTTGCTGCAAA+GGG - chr7_2:77879075-77879094 None:intergenic 30.0%
! AAATGAATCTTTTGCTGCAA+AGG - chr7_2:77879076-77879095 None:intergenic 30.0%
AGAACAAGTACTTAAAGACT+TGG - chr7_2:77879292-77879311 None:intergenic 30.0%
TCAAAATATCCGATGCTAAA+AGG - chr7_2:77879373-77879392 None:intergenic 30.0%
GAACAAGAAGAAAATGAACT+TGG + chr7_2:77879391-77879410 Msa1078860:three_prime_UTR 30.0%
GGCAAATAAATACCATTACA+TGG - chr7_2:77879464-77879483 None:intergenic 30.0%
! TTGGTGGTAATTGGAAGAAA+CGG - chr7_2:77875765-77875784 None:intergenic 35.0%
TCCAATTACCACCAAAATTC+AGG + chr7_2:77875770-77875789 Msa1078860:CDS 35.0%
!! ACCTGAATTTTGGTGGTAAT+TGG - chr7_2:77875774-77875793 None:intergenic 35.0%
! AATGTGAACCTGAATTTTGG+TGG - chr7_2:77875781-77875800 None:intergenic 35.0%
! CATTTTCAGAAAACGAAGCT+TGG + chr7_2:77875862-77875881 Msa1078860:intron 35.0%
CTGCTACAAAAATTGAACAG+TGG + chr7_2:77875916-77875935 Msa1078860:CDS 35.0%
! TTCTTTGTTTCAGATGTCTG+AGG - chr7_2:77875951-77875970 None:intergenic 35.0%
TCTTTCGCAGATTGAACTTA+GGG - chr7_2:77875980-77875999 None:intergenic 35.0%
!!! ACTGCTTTTTTCACTAATGC+TGG + chr7_2:77876014-77876033 Msa1078860:CDS 35.0%
! GTGTTAATGTTTAGGGGTTT+TGG + chr7_2:77876123-77876142 Msa1078860:intron 35.0%
TTGAGAAGGAAACATTACCA+AGG + chr7_2:77876179-77876198 Msa1078860:CDS 35.0%
AACATTACCAAGGATTGAAG+AGG + chr7_2:77876189-77876208 Msa1078860:CDS 35.0%
TATACATCCTCTTCAATCCT+TGG - chr7_2:77876199-77876218 None:intergenic 35.0%
!! AACTGAAAGTGTTGATTTGG+AGG + chr7_2:77876270-77876289 Msa1078860:CDS 35.0%
!! ACTGAAAGTGTTGATTTGGA+GGG + chr7_2:77876271-77876290 Msa1078860:CDS 35.0%
AAAAACTCACAGTCTCTAGT+TGG - chr7_2:77876403-77876422 None:intergenic 35.0%
!!! TCTTTTTTCAGCTGCTAGAA+AGG + chr7_2:77876499-77876518 Msa1078860:intron 35.0%
TATTTCTTACCGAGTGAGAT+TGG + chr7_2:77876704-77876723 Msa1078860:intron 35.0%
TCTATGTAACCAATCTCACT+CGG - chr7_2:77876716-77876735 None:intergenic 35.0%
CACTTAACAGTAGGATCATA+AGG - chr7_2:77876757-77876776 None:intergenic 35.0%
AGTAATCTTGAGAAGAGACA+GGG - chr7_2:77876784-77876803 None:intergenic 35.0%
AAGTAATCTTGAGAAGAGAC+AGG - chr7_2:77876785-77876804 None:intergenic 35.0%
TGTTTCCCCTTTCAAAACTT+GGG + chr7_2:77876858-77876877 Msa1078860:intron 35.0%
!!! TACATCCCAAGTTTTGAAAG+GGG - chr7_2:77876866-77876885 None:intergenic 35.0%
GTGGACATTGATATACATTC+AGG - chr7_2:77876910-77876929 None:intergenic 35.0%
TGATATTGCACTTCTGTGAT+GGG - chr7_2:77876941-77876960 None:intergenic 35.0%
TTGATATTGCACTTCTGTGA+TGG - chr7_2:77876942-77876961 None:intergenic 35.0%
!! ACACAATTTCAGCTTTAGAC+AGG - chr7_2:77876988-77877007 None:intergenic 35.0%
GAAATTGTGGAATTTGCACT+AGG - chr7_2:77877398-77877417 None:intergenic 35.0%
! TGCTCTTTTGGATGAAATTG+TGG - chr7_2:77877411-77877430 None:intergenic 35.0%
TCCACATATCATAAGCGAAA+AGG + chr7_2:77877442-77877461 Msa1078860:CDS 35.0%
! TCCTTTTCGCTTATGATATG+TGG - chr7_2:77877446-77877465 None:intergenic 35.0%
TATCATAAGCGAAAAGGACA+AGG + chr7_2:77877448-77877467 Msa1078860:CDS 35.0%
GACAAGGCAAAACACATAAA+TGG + chr7_2:77877464-77877483 Msa1078860:CDS 35.0%
AAGGCAAAACACATAAATGG+TGG + chr7_2:77877467-77877486 Msa1078860:CDS 35.0%
GCATTCCTTATGCAAAAATG+AGG - chr7_2:77877532-77877551 None:intergenic 35.0%
ATCTGTTATTGGAGGTTCAA+GGG + chr7_2:77877610-77877629 Msa1078860:CDS 35.0%
! TTGTCTTGGTTGATATTGAC+TGG - chr7_2:77877679-77877698 None:intergenic 35.0%
AGCAATAACGTTTCTTCTTG+CGG - chr7_2:77877768-77877787 None:intergenic 35.0%
GAACTATCACACATGTGTTT+AGG - chr7_2:77877980-77877999 None:intergenic 35.0%
AACACATGTGTGATAGTTCA+AGG + chr7_2:77877981-77878000 Msa1078860:CDS 35.0%
TGATAGTAACTCTAGCAGAA+AGG + chr7_2:77878012-77878031 Msa1078860:CDS 35.0%
!!! CGGAGTGATTTTAACTTAGA+AGG + chr7_2:77878082-77878101 Msa1078860:CDS 35.0%
!!! TGATTTTAACTTAGAAGGGC+AGG + chr7_2:77878087-77878106 Msa1078860:CDS 35.0%
CCATCAAAGAAACCAATCTT+TGG - chr7_2:77878217-77878236 None:intergenic 35.0%
!! CCAAAGATTGGTTTCTTTGA+TGG + chr7_2:77878214-77878233 Msa1078860:CDS 35.0%
GAAAAACCAATACATGGCTA+TGG - chr7_2:77878347-77878366 None:intergenic 35.0%
GATTGTTTGATCGAACAAGT+TGG + chr7_2:77878826-77878845 Msa1078860:CDS 35.0%
GAACATAAATTCCAAGACTC+AGG + chr7_2:77878855-77878874 Msa1078860:CDS 35.0%
AAGACTCAGGAAAAGATCAA+CGG + chr7_2:77878868-77878887 Msa1078860:CDS 35.0%
AGCTTCCAAGATAAATCCAA+TGG + chr7_2:77878922-77878941 Msa1078860:CDS 35.0%
CCATACCATTGGATTTATCT+TGG - chr7_2:77878930-77878949 None:intergenic 35.0%
CCAAGATAAATCCAATGGTA+TGG + chr7_2:77878927-77878946 Msa1078860:CDS 35.0%
ATTCGATAACTCCATACCAT+TGG - chr7_2:77878941-77878960 None:intergenic 35.0%
TATGGAGTTATCGAATCACA+AGG + chr7_2:77878945-77878964 Msa1078860:CDS 35.0%
!!! GATTTTATCTCTGAAGTTGC+TGG - chr7_2:77879129-77879148 None:intergenic 35.0%
! AATGTGACTTGGCGAATAGA+TGG - chr7_2:77875507-77875526 None:intergenic 40.0%
TGGTGGTAATTGGAAGAAAC+GGG - chr7_2:77875764-77875783 None:intergenic 40.0%
CTCTTTCGCAGATTGAACTT+AGG - chr7_2:77875981-77876000 None:intergenic 40.0%
ATCTGCGAAAGAGTTTAGCT+TGG + chr7_2:77875988-77876007 Msa1078860:CDS 40.0%
! TCTGCGAAAGAGTTTAGCTT+GGG + chr7_2:77875989-77876008 Msa1078860:CDS 40.0%
TGTGAATCCATTTCGACCTT+AGG + chr7_2:77876226-77876245 Msa1078860:CDS 40.0%
GTGAATCCATTTCGACCTTA+GGG + chr7_2:77876227-77876246 Msa1078860:CDS 40.0%
!! TTTGGAGGGTGATTTGTTTG+AGG + chr7_2:77876285-77876304 Msa1078860:CDS 40.0%
CAGCTGAAAAAAGAGAGTCA+AGG - chr7_2:77876493-77876512 None:intergenic 40.0%
! TTTTCAGCTGCTAGAAAGGT+TGG + chr7_2:77876503-77876522 Msa1078860:intron 40.0%
ATGTAAGTTACCTTGTTGCG+AGG - chr7_2:77876536-77876555 None:intergenic 40.0%
CAGGGTTAACACTTAACAGT+AGG - chr7_2:77876766-77876785 None:intergenic 40.0%
CTGTTTCCCCTTTCAAAACT+TGG + chr7_2:77876857-77876876 Msa1078860:intron 40.0%
TTGGGATGTAATTCCACCTT+TGG + chr7_2:77876876-77876895 Msa1078860:intron 40.0%
CATTCAGGTCAAAGTTCCAA+AGG - chr7_2:77876895-77876914 None:intergenic 40.0%
GATATTGCACTTCTGTGATG+GGG - chr7_2:77876940-77876959 None:intergenic 40.0%
ATCTATTTCAAAGCCGTCGA+AGG + chr7_2:77877361-77877380 Msa1078860:CDS 40.0%
! GAATTTGCACTAGGCTTTGT+TGG - chr7_2:77877389-77877408 None:intergenic 40.0%
! AACACTAAGCGATGCTCTTT+TGG - chr7_2:77877423-77877442 None:intergenic 40.0%
ATGGTGGTTAGTACTTGCAT+TGG + chr7_2:77877483-77877502 Msa1078860:intron 40.0%
!! GTGTCAAGAGCATCTGTTAT+TGG + chr7_2:77877599-77877618 Msa1078860:CDS 40.0%
!! TCAAGAGCATCTGTTATTGG+AGG + chr7_2:77877602-77877621 Msa1078860:CDS 40.0%
CATCTGTTATTGGAGGTTCA+AGG + chr7_2:77877609-77877628 Msa1078860:CDS 40.0%
TCTGTTATTGGAGGTTCAAG+GGG + chr7_2:77877611-77877630 Msa1078860:CDS 40.0%
!!! GGAAGTTGCTGATTTTGTCT+TGG - chr7_2:77877693-77877712 None:intergenic 40.0%
TCAGCAACTTCCAAATCTTC+CGG + chr7_2:77877701-77877720 Msa1078860:CDS 40.0%
TAAGTTGCTACCGGAAGATT+TGG - chr7_2:77877714-77877733 None:intergenic 40.0%
GCAAGAAGAAACGTTATTGC+TGG + chr7_2:77877767-77877786 Msa1078860:CDS 40.0%
GCTAGAGTTACTATCAATGC+TGG - chr7_2:77878008-77878027 None:intergenic 40.0%
TCAGACACTAATGCAGATCA+AGG + chr7_2:77878040-77878059 Msa1078860:CDS 40.0%
!!! TTTTAACTTAGAAGGGCAGG+AGG + chr7_2:77878090-77878109 Msa1078860:CDS 40.0%
AAGAAACCAATCTTTGGCGA+AGG - chr7_2:77878211-77878230 None:intergenic 40.0%
AATACATGGCTATGGCTTTC+AGG - chr7_2:77878339-77878358 None:intergenic 40.0%
TGAAAGCCATAGCCATGTAT+TGG + chr7_2:77878338-77878357 Msa1078860:intron 40.0%
CACGTGGAAAAACCAATACA+TGG - chr7_2:77878353-77878372 None:intergenic 40.0%
CTTGCAGCTTTGCTTTGATT+TGG - chr7_2:77878540-77878559 None:intergenic 40.0%
TACATCACTGTCGCATGAAA+TGG + chr7_2:77878729-77878748 Msa1078860:CDS 40.0%
TATCATGATAGACACTGTCC+TGG - chr7_2:77878798-77878817 None:intergenic 40.0%
! GTTGATCTTTTCCTGAGTCT+TGG - chr7_2:77878869-77878888 None:intergenic 40.0%
TTGCCATATCAATGCTGGTA+GGG - chr7_2:77879038-77879057 None:intergenic 40.0%
TGAAGTTGCCATATCAATGC+TGG - chr7_2:77879043-77879062 None:intergenic 40.0%
TTGATATGGCAACTTCAGCA+AGG + chr7_2:77879046-77879065 Msa1078860:CDS 40.0%
TTTGTAATGCTTTCCAGCAC+AGG - chr7_2:77879162-77879181 None:intergenic 40.0%
!!! TGAGCAGTCTCTTTTTTCCT+TGG + chr7_2:77879331-77879350 Msa1078860:three_prime_UTR 40.0%
!!! GAGCAGTCTCTTTTTTCCTT+GGG + chr7_2:77879332-77879351 Msa1078860:three_prime_UTR 40.0%
! GCCATGAATCCTTTTAGCAT+CGG + chr7_2:77879361-77879380 Msa1078860:three_prime_UTR 40.0%
TCCGATGCTAAAAGGATTCA+TGG - chr7_2:77879365-77879384 None:intergenic 40.0%
GGCGAAAGTGATGTGAAGAA+GGG - chr7_2:77875638-77875657 None:intergenic 45.0%
CTTCTTCACATCACTTTCGC+CGG + chr7_2:77875637-77875656 Msa1078860:five_prime_UTR 45.0%
! GTTGTTTATCGGAGAAGCGT+CGG - chr7_2:77875678-77875697 None:intergenic 45.0%
GGGATCGAGAAGAGAATCAT+CGG - chr7_2:77875744-77875763 None:intergenic 45.0%
!!! TTTAGGGGTTTTGGATGCTG+AGG + chr7_2:77876132-77876151 Msa1078860:intron 45.0%
GGTTAAACTATCGCTCCCTA+AGG - chr7_2:77876245-77876264 None:intergenic 45.0%
! GGTAGCTGCACTAGCAATTT+TGG - chr7_2:77876347-77876366 None:intergenic 45.0%
TCAGGTCAAAGTTCCAAAGG+TGG - chr7_2:77876892-77876911 None:intergenic 45.0%
! TCTGTGATGGGGTTACTTTG+TGG - chr7_2:77876929-77876948 None:intergenic 45.0%
!! CAGCTTTAGACAGGACAACA+TGG - chr7_2:77876979-77876998 None:intergenic 45.0%
TATTGGAGGTTCAAGGGGTA+CGG + chr7_2:77877616-77877635 Msa1078860:CDS 45.0%
! TGACTGGCCAGGAGTTAATT+TGG - chr7_2:77877663-77877682 None:intergenic 45.0%
! TTGGTTGATATTGACTGGCC+AGG - chr7_2:77877674-77877693 None:intergenic 45.0%
AGTCACTAACAGAACTAGCG+GGG - chr7_2:77877925-77877944 None:intergenic 45.0%
CAGTCACTAACAGAACTAGC+GGG - chr7_2:77877926-77877945 None:intergenic 45.0%
CCAGTCACTAACAGAACTAG+CGG - chr7_2:77877927-77877946 None:intergenic 45.0%
!! TGTTAGTGACTGGTCTTCAG+AGG + chr7_2:77877934-77877953 Msa1078860:CDS 45.0%
AAGTGTAAGGACTGCTTCTG+TGG + chr7_2:77878138-77878157 Msa1078860:CDS 45.0%
!! TCTCACGGCTTGCTAAAACA+TGG + chr7_2:77878493-77878512 Msa1078860:CDS 45.0%
! GATTTGGATGTGGGTTTTGC+TGG - chr7_2:77878606-77878625 None:intergenic 45.0%
TAGGGGTGACACATTGATAC+GGG - chr7_2:77879020-77879039 None:intergenic 45.0%
GTAGGGGTGACACATTGATA+CGG - chr7_2:77879021-77879040 None:intergenic 45.0%
TGCCATATCAATGCTGGTAG+GGG - chr7_2:77879037-77879056 None:intergenic 45.0%
GTTGCCATATCAATGCTGGT+AGG - chr7_2:77879039-77879058 None:intergenic 45.0%
ATCAACCAACTTACCTGTGC+TGG + chr7_2:77879146-77879165 Msa1078860:CDS 45.0%
GATTCATGGCAATGAACCCA+AGG - chr7_2:77879351-77879370 None:intergenic 45.0%
!!! TAGTTTTTTTTTTTTTAAAA+AGG + chr7_2:77876614-77876633 Msa1078860:intron 5.0%
ACTTAGGAGTAGCGGCTAGT+GGG - chr7_2:77875588-77875607 None:intergenic 50.0%
AACTTAGGAGTAGCGGCTAG+TGG - chr7_2:77875589-77875608 None:intergenic 50.0%
CGGCGAAAGTGATGTGAAGA+AGG - chr7_2:77875639-77875658 None:intergenic 50.0%
ATCGCTCCCTAAGGTCGAAA+TGG - chr7_2:77876236-77876255 None:intergenic 50.0%
! ACCAGAATGTCGTCTAGCTC+TGG + chr7_2:77876364-77876383 Msa1078860:CDS 50.0%
!! CCAGAATGTCGTCTAGCTCT+GGG + chr7_2:77876365-77876384 Msa1078860:CDS 50.0%
!! TCGTCTAGCTCTGGGATTCT+GGG + chr7_2:77876373-77876392 Msa1078860:CDS 50.0%
!! TGAAGGCATCACCTGCTTCA+AGG + chr7_2:77877083-77877102 Msa1078860:CDS 50.0%
GCTGGTAGATTCCTTGAAGC+AGG - chr7_2:77877097-77877116 None:intergenic 50.0%
CCAGCTGTTGCGAGAGTAAT+CGG + chr7_2:77877112-77877131 Msa1078860:CDS 50.0%
CAGCTGTTGCGAGAGTAATC+GGG + chr7_2:77877113-77877132 Msa1078860:CDS 50.0%
TGAAAAAGCCCGTCGCTACA+AGG + chr7_2:77877330-77877349 Msa1078860:intron 50.0%
TTTCTTGAAGCGAAGCCCGA+TGG - chr7_2:77877833-77877852 None:intergenic 50.0%
GTCACTAACAGAACTAGCGG+GGG - chr7_2:77877924-77877943 None:intergenic 50.0%
!! CCGCTAGTTCTGTTAGTGAC+TGG + chr7_2:77877924-77877943 Msa1078860:CDS 50.0%
! TGAAGGTTTTGCAGGAGCTG+GGG - chr7_2:77878176-77878195 None:intergenic 50.0%
! CTGAAGGTTTTGCAGGAGCT+GGG - chr7_2:77878177-77878196 None:intergenic 50.0%
CCACACTCTTCTGTGTCTCA+CGG + chr7_2:77878478-77878497 Msa1078860:CDS 50.0%
!! GGCTTGCTAAAACATGGAGC+AGG + chr7_2:77878499-77878518 Msa1078860:CDS 50.0%
GGAGCAGGAAGTTCAAGTGA+AGG + chr7_2:77878514-77878533 Msa1078860:CDS 50.0%
AGGGGTGACACATTGATACG+GGG - chr7_2:77879019-77879038 None:intergenic 50.0%
!! CACCCCTACCAGCATTGATA+TGG + chr7_2:77879032-77879051 Msa1078860:CDS 50.0%
GCTTTCCAGCACAGGTAAGT+TGG - chr7_2:77879154-77879173 None:intergenic 50.0%
TCGGAGTCGGAAATCATCGC+CGG - chr7_2:77875659-77875678 None:intergenic 55.0%
!! TATCGGAGAAGCGTCGGAGT+CGG - chr7_2:77875672-77875691 None:intergenic 55.0%
CCCAGAGCTAGACGACATTC+TGG - chr7_2:77876368-77876387 None:intergenic 55.0%
!! GTCGTCTAGCTCTGGGATTC+TGG + chr7_2:77876372-77876391 Msa1078860:CDS 55.0%
!! CGTCTAGCTCTGGGATTCTG+GGG + chr7_2:77876374-77876393 Msa1078860:CDS 55.0%
AGCTGCTAGAAAGGTTGGCG+TGG + chr7_2:77876508-77876527 Msa1078860:intron 55.0%
TGCTAGATGTGCCACCCCAA+TGG + chr7_2:77876814-77876833 Msa1078860:intron 55.0%
GCTAGATGTGCCACCCCAAT+GGG + chr7_2:77876815-77876834 Msa1078860:intron 55.0%
CCAGTTGAACCAGCCCATTG+GGG - chr7_2:77876831-77876850 None:intergenic 55.0%
CCCAGTTGAACCAGCCCATT+GGG - chr7_2:77876832-77876851 None:intergenic 55.0%
!! CCCAATGGGCTGGTTCAACT+GGG + chr7_2:77876829-77876848 Msa1078860:intron 55.0%
!! CCAATGGGCTGGTTCAACTG+GGG + chr7_2:77876830-77876849 Msa1078860:intron 55.0%
CCGATTACTCTCGCAACAGC+TGG - chr7_2:77877115-77877134 None:intergenic 55.0%
AAAAGCCCGTCGCTACAAGG+AGG + chr7_2:77877333-77877352 Msa1078860:intron 55.0%
AAAGCCCGTCGCTACAAGGA+GGG + chr7_2:77877334-77877353 Msa1078860:intron 55.0%
TGACTCCCTCCTTGTAGCGA+CGG - chr7_2:77877342-77877361 None:intergenic 55.0%
!! GGCTTTGTTGGCACCTTCGA+CGG - chr7_2:77877377-77877396 None:intergenic 55.0%
! GAAGGTTTTGCAGGAGCTGG+GGG - chr7_2:77878175-77878194 None:intergenic 55.0%
! CCTGAAGGTTTTGCAGGAGC+TGG - chr7_2:77878178-77878197 None:intergenic 55.0%
CCAGCTCCTGCAAAACCTTC+AGG + chr7_2:77878175-77878194 Msa1078860:CDS 55.0%
CGACTGCCTTCGCCAAAGAT+TGG + chr7_2:77878202-77878221 Msa1078860:CDS 55.0%
! GGCTTTCAGGTGTGTCACCA+AGG - chr7_2:77878326-77878345 None:intergenic 55.0%
CCGTGAGACACAGAAGAGTG+TGG - chr7_2:77878481-77878500 None:intergenic 55.0%
ACTGTCCTGGTGATCGACAC+GGG - chr7_2:77878785-77878804 None:intergenic 55.0%
CACTGTCCTGGTGATCGACA+CGG - chr7_2:77878786-77878805 None:intergenic 55.0%
TGGCGTGGTTCCTCGCAACA+AGG + chr7_2:77876523-77876542 Msa1078860:CDS 60.0%
GTTGAACCAGCCCATTGGGG+TGG - chr7_2:77876828-77876847 None:intergenic 60.0%
!! CCCCAATGGGCTGGTTCAAC+TGG + chr7_2:77876828-77876847 Msa1078860:intron 60.0%
CCCCAGTTGAACCAGCCCAT+TGG - chr7_2:77876833-77876852 None:intergenic 60.0%
!! TGGGCTGGTTCAACTGGGGA+TGG + chr7_2:77876834-77876853 Msa1078860:intron 60.0%
GACTCCCTCCTTGTAGCGAC+GGG - chr7_2:77877341-77877360 None:intergenic 60.0%
AAGCCCGATGGTGTTCTGGC+GGG - chr7_2:77877821-77877840 None:intergenic 60.0%
GAAGCCCGATGGTGTTCTGG+CGG - chr7_2:77877822-77877841 None:intergenic 60.0%
AGCGAAGCCCGATGGTGTTC+TGG - chr7_2:77877825-77877844 None:intergenic 60.0%
GGGCAGGAGGCTCAGCAAAA+TGG + chr7_2:77878103-77878122 Msa1078860:CDS 60.0%
! CGCAGGCCTGAAGGTTTTGC+AGG - chr7_2:77878184-77878203 None:intergenic 60.0%
TCTTTGGCGAAGGCAGTCGC+AGG - chr7_2:77878201-77878220 None:intergenic 60.0%
TGGTGATCGACACGGGTCAG+TGG - chr7_2:77878778-77878797 None:intergenic 60.0%
! ACTGACCCGTGTCGATCACC+AGG + chr7_2:77878777-77878796 Msa1078860:CDS 60.0%
GATGTGCCACCCCAATGGGC+TGG + chr7_2:77876819-77876838 Msa1078860:intron 65.0%
CCGATGGTGTTCTGGCGGGA+GGG - chr7_2:77877817-77877836 None:intergenic 65.0%
CCCTCCCGCCAGAACACCAT+CGG + chr7_2:77877814-77877833 Msa1078860:CDS 65.0%
CCTCCCGCCAGAACACCATC+GGG + chr7_2:77877815-77877834 Msa1078860:CDS 65.0%
GAAGGCAGTCGCAGGCCTGA+AGG - chr7_2:77878193-77878212 None:intergenic 65.0%
TCCTCAGTGCGCACTCCACG+TGG + chr7_2:77878445-77878464 Msa1078860:CDS 65.0%
ACCACGTGGAGTGCGCACTG+AGG - chr7_2:77878449-77878468 None:intergenic 65.0%
TCAGTGCGCACTCCACGTGG+TGG + chr7_2:77878448-77878467 Msa1078860:CDS 65.0%
TGTGGTTGCGCTCCACCACG+TGG - chr7_2:77878463-77878482 None:intergenic 65.0%
CTGGCGGGAGGGCGAGATGA+GGG - chr7_2:77877806-77877825 None:intergenic 70.0%
TCTGGCGGGAGGGCGAGATG+AGG - chr7_2:77877807-77877826 None:intergenic 70.0%
CCCGATGGTGTTCTGGCGGG+AGG - chr7_2:77877818-77877837 None:intergenic 70.0%
GCGGGAGGGCGAGATGAGGG+AGG - chr7_2:77877803-77877822 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 77875495 77879484 77875495 ID=Msa1078860;Name=Msa1078860
chr7_2 mRNA 77875495 77879484 77875495 ID=Msa1078860-mRNA-1;Parent=Msa1078860;Name=Msa1078860-mRNA-1;_AED=0.03;_eAED=0.03;_QI=167|1|1|1|1|1|8|290|754
chr7_2 exon 77875495 77875791 77875495 ID=Msa1078860-mRNA-1:exon:19196;Parent=Msa1078860-mRNA-1
chr7_2 exon 77875871 77876035 77875871 ID=Msa1078860-mRNA-1:exon:19197;Parent=Msa1078860-mRNA-1
chr7_2 exon 77876137 77876412 77876137 ID=Msa1078860-mRNA-1:exon:19198;Parent=Msa1078860-mRNA-1
chr7_2 exon 77876510 77876544 77876510 ID=Msa1078860-mRNA-1:exon:19199;Parent=Msa1078860-mRNA-1
chr7_2 exon 77877082 77877180 77877082 ID=Msa1078860-mRNA-1:exon:19200;Parent=Msa1078860-mRNA-1
chr7_2 exon 77877338 77877488 77877338 ID=Msa1078860-mRNA-1:exon:19201;Parent=Msa1078860-mRNA-1
chr7_2 exon 77877585 77878237 77877585 ID=Msa1078860-mRNA-1:exon:19202;Parent=Msa1078860-mRNA-1
chr7_2 exon 77878439 77879484 77878439 ID=Msa1078860-mRNA-1:exon:19203;Parent=Msa1078860-mRNA-1
chr7_2 five_prime_UTR 77875495 77875661 77875495 ID=Msa1078860-mRNA-1:five_prime_utr;Parent=Msa1078860-mRNA-1
chr7_2 CDS 77875662 77875791 77875662 ID=Msa1078860-mRNA-1:cds;Parent=Msa1078860-mRNA-1
chr7_2 CDS 77875871 77876035 77875871 ID=Msa1078860-mRNA-1:cds;Parent=Msa1078860-mRNA-1
chr7_2 CDS 77876137 77876412 77876137 ID=Msa1078860-mRNA-1:cds;Parent=Msa1078860-mRNA-1
chr7_2 CDS 77876510 77876544 77876510 ID=Msa1078860-mRNA-1:cds;Parent=Msa1078860-mRNA-1
chr7_2 CDS 77877082 77877180 77877082 ID=Msa1078860-mRNA-1:cds;Parent=Msa1078860-mRNA-1
chr7_2 CDS 77877338 77877488 77877338 ID=Msa1078860-mRNA-1:cds;Parent=Msa1078860-mRNA-1
chr7_2 CDS 77877585 77878237 77877585 ID=Msa1078860-mRNA-1:cds;Parent=Msa1078860-mRNA-1
chr7_2 CDS 77878439 77879194 77878439 ID=Msa1078860-mRNA-1:cds;Parent=Msa1078860-mRNA-1
chr7_2 three_prime_UTR 77879195 77879484 77879195 ID=Msa1078860-mRNA-1:three_prime_utr;Parent=Msa1078860-mRNA-1
Gene Sequence

>Msa1078860

ATGATTTCCGACTCCGACGCTTCTCCGATAAACAACGATGTCAAAGATCGACGTCTCAGCATCATCGACTTTCTCTCTGCCGATGATTCTCTTCTCGATCCCGTTTCTTCCAATTACCACCAAAATTCAGAAAACGAAGCTTGGTACACTCCGAATTCAAAAAATTTTGAAGATGCTGCTACAAAAATTGAACAGTGGGAAAACGAACCTCAGACATCTGAAACAAAGAAGAAAAACCCTAAGTTCAATCTGCGAAAGAGTTTAGCTTGGGACACTGCTTTTTTCACTAATGCTGGGGTTTTGGATGCTGAGGAGTTAACTAGTATAATTGAAGGTGTTGAGAAGGAAACATTACCAAGGATTGAAGAGGATGTATACAAATCATGTGAATCCATTTCGACCTTAGGGAGCGATAGTTTAACCTTTGAAACTGAAAGTGTTGATTTGGAGGGTGATTTGTTTGAGGATGTTCGAGCTTCGATTCAGAAATCTAGCAATAAGTCCAAAATTGCTAGTGCAGCTACCAGAATGTCGTCTAGCTCTGGGATTCTGGGGTTGCCAACTAGAGACTCTGCTAGAAAGGTTGGCGTGGTTCCTCGCAACAAGATGAAGGCATCACCTGCTTCAAGGAATCTACCAGCTGTTGCGAGAGTAATCGGGAAGACGACAAACAAGAATAATCCTACTTTTACACAAATACCACAGCCCGTCGCTACAAGGAGGGAGTCATCTATTTCAAAGCCGTCGAAGGTGCCAACAAAGCCTAGTGCAAATTCCACAATTTCATCCAAAAGAGCATCGCTTAGTGTTCCACATATCATAAGCGAAAAGGACAAGGCAAAACACATAAATGGTGATAGAGTCAGTTTAGTGTCAAGAGCATCTGTTATTGGAGGTTCAAGGGGTACGGAGCCTAAGTCCACAATATTATCCAAATTAACTCCTGGCCAGTCAATATCAACCAAGACAAAATCAGCAACTTCCAAATCTTCCGGTAGCAACTTATCTGATAATATTGGTAAATCTCCATTTAATTCCGCAAGAAGAAACGTTATTGCTGGAACTTCAAAGCCTCCCTCATCTCGCCCTCCCGCCAGAACACCATCGGGCTTCGCTTCAAGAAACAAAACTGAATCTGGGAATTCTAGTCTCTCAAGCTTGATTTCTGCTAACAAACTTTCTTCTAGTATTTCCCCCGCTAGTTCTGTTAGTGACTGGTCTTCAGAGGCATCTGTATCAACTTCTATGCCTAAACACATGTGTGATAGTTCAAGGTCCAGCATTGATAGTAACTCTAGCAGAAAGGTTTTATCAGACACTAATGCAGATCAAGGTATAAATTCTCAGATTTCTCGGAGTGATTTTAACTTAGAAGGGCAGGAGGCTCAGCAAAATGGAATTATCAGTCAAAGTGTAAGGACTGCTTCTGTGGCAGCAGTTAATCCCCCAGCTCCTGCAAAACCTTCAGGCCTGCGACTGCCTTCGCCAAAGATTGGTTTCTTTGATGGGGCGAAATCCTCAGTGCGCACTCCACGTGGTGGAGCGCAACCACACTCTTCTGTGTCTCACGGCTTGCTAAAACATGGAGCAGGAAGTTCAAGTGAAGGCCAAATCAAAGCAAAGCTGCAAGCAGTGAGATGTATCAAGCCAATTGCAAACAAAAAACTAGATAACCAGCAAAACCCACATCCAAATCATATTGATGAATCATTAGATGTTGCAAATAAGACATCTAGTGCAGAGCAGAACGTCAAAAGCTCTTCTGAAATGCTGAAGTGTGCTGTTAAAAATGTTGAATATACATCACTGTCGCATGAAATGGAGAGAACTAATTATGATTTGCGTCCACTGACCCGTGTCGATCACCAGGACAGTGTCTATCATGATAATCAAGTTGATTGTTTGATCGAACAAGTTGGACTTATGAACATAAATTCCAAGACTCAGGAAAAGATCAACGGTGATTCTCTTTCTTTTTGTAAGACTGATATCAGCTTCCAAGATAAATCCAATGGTATGGAGTTATCGAATCACAAGGAGCTTTTTGATTATCCTAAAAACCAAGAATTAAGCAAAGGTTTGTCTACCCCGTATCAATGTGTCACCCCTACCAGCATTGATATGGCAACTTCAGCAAGGATACCCTTTGCAGCAAAAGATTCATTTTGCAACATGGATTGTACTGTTTTGACAGAACCAGCAACTTCAGAGATAAAATCAACCAACTTACCTGTGCTGGAAAGCATTACAAAAGAAAACAACTGA

Protein sequence

>Msa1078860

MISDSDASPINNDVKDRRLSIIDFLSADDSLLDPVSSNYHQNSENEAWYTPNSKNFEDAATKIEQWENEPQTSETKKKNPKFNLRKSLAWDTAFFTNAGVLDAEELTSIIEGVEKETLPRIEEDVYKSCESISTLGSDSLTFETESVDLEGDLFEDVRASIQKSSNKSKIASAATRMSSSSGILGLPTRDSARKVGVVPRNKMKASPASRNLPAVARVIGKTTNKNNPTFTQIPQPVATRRESSISKPSKVPTKPSANSTISSKRASLSVPHIISEKDKAKHINGDRVSLVSRASVIGGSRGTEPKSTILSKLTPGQSISTKTKSATSKSSGSNLSDNIGKSPFNSARRNVIAGTSKPPSSRPPARTPSGFASRNKTESGNSSLSSLISANKLSSSISPASSVSDWSSEASVSTSMPKHMCDSSRSSIDSNSSRKVLSDTNADQGINSQISRSDFNLEGQEAQQNGIISQSVRTASVAAVNPPAPAKPSGLRLPSPKIGFFDGAKSSVRTPRGGAQPHSSVSHGLLKHGAGSSSEGQIKAKLQAVRCIKPIANKKLDNQQNPHPNHIDESLDVANKTSSAEQNVKSSSEMLKCAVKNVEYTSLSHEMERTNYDLRPLTRVDHQDSVYHDNQVDCLIEQVGLMNINSKTQEKINGDSLSFCKTDISFQDKSNGMELSNHKELFDYPKNQELSKGLSTPYQCVTPTSIDMATSARIPFAAKDSFCNMDCTVLTEPATSEIKSTNLPVLESITKENN*