AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1294460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1294460 MtrunA17_Chr8g0371521 99.374 479 3 0 1 479 1 479 0.0 988
Msa1294460 MtrunA17_Chr7g0237581 58.848 243 95 2 24 265 11 249 1.15e-96 293
Msa1294460 MtrunA17_Chr2g0292681 56.420 257 106 3 13 265 25 279 1.38e-93 296
Msa1294460 MtrunA17_Chr7g0237621 58.051 236 95 1 32 267 32 263 1.18e-92 283
Msa1294460 MtrunA17_Chr2g0292671 50.932 161 78 1 105 265 2 161 1.76e-50 170
Msa1294460 MtrunA17_Chr2g0292661 64.615 65 23 0 27 91 39 103 3.70e-23 94.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1294460 AT3G51280.1 67.312 465 109 7 12 476 6 427 0.0 603
Msa1294460 AT5G48850.1 65.842 202 69 0 34 235 25 226 8.08e-94 286
Msa1294460 AT1G04770.1 60.435 230 86 3 35 263 19 244 1.09e-91 281
Msa1294460 AT4G20900.2 50.549 273 121 2 8 266 9 281 1.77e-89 280
Msa1294460 AT4G20900.1 47.751 289 121 3 8 266 9 297 3.11e-85 270
Msa1294460 AT5G44330.1 50.649 231 109 2 34 264 46 271 1.94e-69 229
Msa1294460 AT5G22794.2 58.209 67 28 0 113 179 71 137 2.79e-18 84.3
Msa1294460 AT5G22794.1 50.746 67 26 1 113 179 71 130 4.62e-12 65.5

Find 109 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGATATTATGGGTTTAT+TGG 0.116432 8_3:-52286961 Msa1294460:three_prime_UTR
TTATGAATAAATTGATATTA+TGG 0.166982 8_3:-52286970 Msa1294460:three_prime_UTR
TGCTATTCTTGCTGCTGTTT+TGG 0.178483 8_3:-52287336 Msa1294460:CDS
AGAGAGCAATTCCGTTGTTT+TGG 0.210595 8_3:-52289353 Msa1294460:CDS
AATGAAAATGCTGCTACTTC+TGG 0.215619 8_3:-52287293 Msa1294460:CDS
ATAAATCAATTAGACAATTA+AGG 0.235046 8_3:+52287045 None:intergenic
AGGAGTAGCCATCTGCATTT+TGG 0.244447 8_3:-52287073 Msa1294460:three_prime_UTR
ACAGCAATTCAAGATGAATT+TGG 0.253422 8_3:-52287695 Msa1294460:CDS
GATGATTTCGCTGCATAAAA+TGG 0.277779 8_3:+52287566 None:intergenic
AGGAAATTAAGTTAAATAAA+TGG 0.286808 8_3:+52287128 None:intergenic
CATTTGCTGTGCTCTTTCAT+AGG 0.288854 8_3:+52287877 None:intergenic
TGTGCCTCAATAGAGCTATT+TGG 0.289144 8_3:+52288727 None:intergenic
TAACTGCAGGTTTGACTCTA+TGG 0.294689 8_3:+52287936 None:intergenic
AACAACAAAATGTGCAATTT+AGG 0.302248 8_3:-52288007 Msa1294460:CDS
TATGAATAAATTGATATTAT+GGG 0.304186 8_3:-52286969 Msa1294460:three_prime_UTR
TGATTTGTTGCCTGATACTA+AGG 0.323363 8_3:-52287369 Msa1294460:CDS
AAATGATTCAGAACGAGTTC+TGG 0.326927 8_3:+52289575 None:intergenic
TTCTTGGTTCTTCATCAATC+TGG 0.332090 8_3:-52287778 Msa1294460:CDS
TCCTCCTCTGTTCATCATTT+CGG 0.336439 8_3:+52287838 None:intergenic
ACAAGAAGCCACTAGATTAT+TGG 0.338104 8_3:-52288613 Msa1294460:intron
GCATTGCAATAGAAAGGATT+TGG 0.341199 8_3:+52286936 None:intergenic
AGTCAATTAACTTAAGCCTT+TGG 0.361559 8_3:+52287203 None:intergenic
TGATGTTTAGTTGGTGGATA+AGG 0.361759 8_3:-52289382 Msa1294460:intron
CATTGAAAGCCAAGCCTTGT+TGG 0.364459 8_3:+52288691 None:intergenic
ACAAAACAAGTTTACTCCTT+TGG 0.369430 8_3:-52287618 Msa1294460:CDS
TCTTCAAAGTCCTTAGTATC+AGG 0.383303 8_3:+52287359 None:intergenic
TTGTTAAATGAAGGGAAACT+TGG 0.386892 8_3:-52288107 Msa1294460:intron
ATAACATCATAGTGTTAGAT+TGG 0.391620 8_3:-52287166 Msa1294460:three_prime_UTR
ATCCCTTGATAATATTCTCT+TGG 0.392842 8_3:-52289193 Msa1294460:CDS
TAAATCAATTAGACAATTAA+GGG 0.396410 8_3:+52287046 None:intergenic
AACAAGGTGAATGTGGAATT+AGG 0.398538 8_3:-52287443 Msa1294460:CDS
ATGAAAATGCTGCTACTTCT+GGG 0.406115 8_3:-52287292 Msa1294460:CDS
CAACAAGGCTTGGCTTTCAA+TGG 0.408200 8_3:-52288690 Msa1294460:CDS
GCTGTTGATGTTGTTCTCAT+TGG 0.412634 8_3:+52287713 None:intergenic
AGCCTTCTTGCTTTGTTCCC+AGG 0.413071 8_3:+52287416 None:intergenic
TGCAGCGAAATCATCTTTCA+AGG 0.414771 8_3:-52287558 Msa1294460:CDS
GTCAATGTGCCTTGTTTACA+AGG 0.424222 8_3:+52286993 None:intergenic
TGTTATGAAGCAACAGAATA+GGG 0.426367 8_3:-52289277 Msa1294460:CDS
AGGTGAAGAAGGTGCTGATT+TGG 0.430455 8_3:+52289617 None:intergenic
CCTTTCTATTGCAATGCAAA+AGG 0.431000 8_3:-52286930 None:intergenic
TTGTTATGAAGCAACAGAAT+AGG 0.435114 8_3:-52289278 Msa1294460:CDS
ATCATTTCACATCACTCATA+AGG 0.435859 8_3:-52289559 Msa1294460:CDS
GGATAGTGCTTTGAAAGATA+TGG 0.439771 8_3:-52289304 Msa1294460:CDS
ATTTCCTGTATGCTACACTA+TGG 0.444205 8_3:-52287112 Msa1294460:three_prime_UTR
GATTTGGAGGGTCTGAAACC+TGG 0.448598 8_3:+52289633 None:intergenic
CTGGCAACCTCAGCCTTGTA+AGG 0.454869 8_3:-52287759 Msa1294460:CDS
AGACTTAAGAGAACAAGGTC+TGG 0.456656 8_3:-52287506 Msa1294460:CDS
CTTGGTCCATCTGTAACTGC+AGG 0.464222 8_3:+52287923 None:intergenic
TCTTCACCTGCAAAACCTCT+TGG 0.468666 8_3:-52289603 Msa1294460:CDS
AGATGAGAATCTGAGCCTCT+TGG 0.492459 8_3:+52287905 None:intergenic
GTATTTAATCCAACAAGGCT+TGG 0.493094 8_3:-52288700 Msa1294460:CDS
GATCCAAGAGAATATTATCA+AGG 0.493677 8_3:+52289190 None:intergenic
AATGTGGAATTAGGTGTGCC+TGG 0.493922 8_3:-52287434 Msa1294460:CDS
TACATTATCTTTGAGTCCAA+AGG 0.496791 8_3:-52287219 Msa1294460:CDS
ACATAAGGAGTATCACCAAC+AGG 0.497457 8_3:+52289534 None:intergenic
GTTGATGTTGTTCTCATTGG+CGG 0.500581 8_3:+52287716 None:intergenic
GTGTGAATGTTATCCTTACA+AGG 0.508378 8_3:+52287746 None:intergenic
TTAGTTGGTGGATAAGGATC+CGG 0.513352 8_3:-52289376 Msa1294460:intron
ACAAGGTCTGGAAATGCTGC+AGG 0.523586 8_3:-52287494 Msa1294460:CDS
AACAACGGAATTGCTCTCTC+CGG 0.528144 8_3:+52289357 None:intergenic
TGCCTTGTTTACAAGGTACA+AGG 0.529107 8_3:+52287000 None:intergenic
TGAAGAAGGTGCTGATTTGG+AGG 0.538531 8_3:+52289620 None:intergenic
TGTTAGATTGGAGATGAGCT+TGG 0.540000 8_3:-52287154 Msa1294460:three_prime_UTR
ACTGCCATAGTGTAGCATAC+AGG 0.544952 8_3:+52287108 None:intergenic
TGAACAGAGGAGGAGTGGAC+AGG 0.547527 8_3:-52287829 Msa1294460:CDS
GAGATGTGGAATGCTCCTCC+AGG 0.548444 8_3:-52289651 Msa1294460:CDS
AGGGAAGAAGTTTCAAGTCT+CGG 0.550109 8_3:-52288640 Msa1294460:CDS
ACAAAGACTGCTAGATCTCA+AGG 0.550806 8_3:-52288660 Msa1294460:CDS
CTGAGAGACTTAAGAGAACA+AGG 0.551011 8_3:-52287511 Msa1294460:CDS
TGCCTTGTACCTTGTAAACA+AGG 0.556187 8_3:-52287002 Msa1294460:three_prime_UTR
ATGTTATCCTTACAAGGCTG+AGG 0.558507 8_3:+52287752 None:intergenic
TATTCTCTTGGATCTATACA+AGG 0.569966 8_3:-52289181 Msa1294460:intron
CAACAATGATGCAAGAGATG+TGG 0.570388 8_3:-52289665 Msa1294460:exon
ATGACCAAATAGCTCTATTG+AGG 0.570773 8_3:-52288731 Msa1294460:CDS
TGTTAAATGAAGGGAAACTT+GGG 0.573897 8_3:-52288106 Msa1294460:intron
GTCAAACCTGCAGTTACAGA+TGG 0.578477 8_3:-52287929 Msa1294460:CDS
ATCCAAGAGAATATTATCAA+GGG 0.583006 8_3:+52289191 None:intergenic
GATAAATGCGGGAGATAGAG+TGG 0.583477 8_3:-52289325 Msa1294460:CDS
CCAAGAAAATTGACAAGAGG+AGG 0.583655 8_3:-52287262 Msa1294460:CDS
GGCATTTGTCTGATGAAACA+AGG 0.583982 8_3:-52287986 Msa1294460:CDS
AATTGACAAGAGGAGGCTCA+AGG 0.587680 8_3:-52287255 Msa1294460:CDS
GTTTACAAGGTACAAGGCAA+AGG 0.590282 8_3:+52287006 None:intergenic
GCTCCAAGAAAATTGACAAG+AGG 0.594072 8_3:-52287265 Msa1294460:CDS
TGCTGCAGGATTACTGAGAG+TGG 0.597304 8_3:-52287480 Msa1294460:CDS
ACACTATGGCAGTTCTACTA+CGG 0.598069 8_3:-52287098 Msa1294460:three_prime_UTR
ATCACTCATAAGGTTCCTGT+TGG 0.598329 8_3:-52289549 Msa1294460:CDS
AAATGAAGGGAAACTTGGGA+TGG 0.608392 8_3:-52288102 Msa1294460:intron
AATGATGAACAGAGGAGGAG+TGG 0.608787 8_3:-52287834 Msa1294460:CDS
TTTATCGCCGCCCAAAACAA+CGG 0.610991 8_3:+52289342 None:intergenic
ATGGCAGTTCTACTACGGAT+AGG 0.618341 8_3:-52287093 Msa1294460:three_prime_UTR
GAACAGCAACAAGGTGAATG+TGG 0.619368 8_3:-52287450 Msa1294460:CDS
AAATCAATTAGACAATTAAG+GGG 0.621061 8_3:+52287047 None:intergenic
TCCGAAATGATGAACAGAGG+AGG 0.643527 8_3:-52287839 Msa1294460:CDS
ATGTGGAATTAGGTGTGCCT+GGG 0.644724 8_3:-52287433 Msa1294460:CDS
AATGAAGGGAAACTTGGGAT+GGG 0.645206 8_3:-52288101 Msa1294460:intron
GAAGAAGGTGCTGATTTGGA+GGG 0.645726 8_3:+52289621 None:intergenic
CAAAGACTGCTAGATCTCAA+GGG 0.647976 8_3:-52288659 Msa1294460:CDS
TGCCTGGGAACAAAGCAAGA+AGG 0.654997 8_3:-52287418 Msa1294460:CDS
TTAAGCGAGTTGTTCACCAA+AGG 0.657800 8_3:+52287602 None:intergenic
AATCAATTAGACAATTAAGG+GGG 0.679389 8_3:+52287048 None:intergenic
AAGCTGTATTTAATCCAACA+AGG 0.684622 8_3:-52288705 Msa1294460:CDS
GCAGTTACAGATGGACCAAG+AGG 0.685614 8_3:-52287920 Msa1294460:CDS
GAAGAAGTTTCAAGTCTCGG+TGG 0.688690 8_3:-52288637 Msa1294460:CDS
GAGTCCGAAATGATGAACAG+AGG 0.689687 8_3:-52287842 Msa1294460:CDS
TTGGAGGGTCTGAAACCTGG+AGG 0.693634 8_3:+52289636 None:intergenic
CTGGAGCTAGACAAAGCGCA+CGG 0.693761 8_3:+52288032 None:intergenic
GATTTCGCTGCATAAAATGG+CGG 0.696414 8_3:+52287569 None:intergenic
GGATGATGTGAACAGCAACA+AGG 0.698794 8_3:-52287459 Msa1294460:CDS
CGAGTTCTGGAAACACCAAG+AGG 0.701607 8_3:+52289588 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAATGTTTTATCTAAA+TGG - chr8_3:52287296-52287315 Msa1294460:CDS 10.0%
!!! TTTTAATGTTTTATCTAAAT+GGG - chr8_3:52287297-52287316 Msa1294460:CDS 10.0%
!!! TATAAAATTACATTCATTTT+GGG + chr8_3:52287829-52287848 None:intergenic 10.0%
!!! TTATAAAATTACATTCATTT+TGG + chr8_3:52287830-52287849 None:intergenic 10.0%
!!! AATGTAATTTTATAATTTGT+AGG - chr8_3:52287835-52287854 Msa1294460:CDS 10.0%
!!! ATGTAATTTTATAATTTGTA+GGG - chr8_3:52287836-52287855 Msa1294460:CDS 10.0%
!! CATAAAAACTTTATTATTTA+AGG + chr8_3:52288294-52288313 None:intergenic 10.0%
!! TTATGAATAAATTGATATTA+TGG - chr8_3:52289742-52289761 Msa1294460:five_prime_UTR 10.0%
!! TATGAATAAATTGATATTAT+GGG - chr8_3:52289743-52289762 Msa1294460:five_prime_UTR 10.0%
!!! TGTAATTTTATAATTTGTAG+GGG - chr8_3:52287837-52287856 Msa1294460:CDS 15.0%
!!! TATTATTTAAGGTTTTGAAA+AGG + chr8_3:52288283-52288302 None:intergenic 15.0%
!! AGGAAATTAAGTTAAATAAA+TGG + chr8_3:52289587-52289606 None:intergenic 15.0%
!! TAAATCAATTAGACAATTAA+GGG + chr8_3:52289669-52289688 None:intergenic 15.0%
!! ATAAATCAATTAGACAATTA+AGG + chr8_3:52289670-52289689 None:intergenic 15.0%
!! AAATTGAACAAAATGTGTAT+GGG + chr8_3:52288182-52288201 None:intergenic 20.0%
!! AAAATTGAACAAAATGTGTA+TGG + chr8_3:52288183-52288202 None:intergenic 20.0%
!! AAAAGTCAAATACTCTTTAA+AGG + chr8_3:52288407-52288426 None:intergenic 20.0%
!! TTCTTAATTTCAAAACCTTA+TGG - chr8_3:52288440-52288459 Msa1294460:intron 20.0%
!! AAATCAATTAGACAATTAAG+GGG + chr8_3:52289668-52289687 None:intergenic 20.0%
!! AATTGATATTATGGGTTTAT+TGG - chr8_3:52289751-52289770 Msa1294460:five_prime_UTR 20.0%
!!! CAATTTTTTGATGATGTTGT+TGG + chr8_3:52287017-52287036 None:intergenic 25.0%
!! AATCATTACCTGAACATTTT+TGG + chr8_3:52287209-52287228 None:intergenic 25.0%
!!! TGTTTGATTTGATGTTTAGT+TGG - chr8_3:52287321-52287340 Msa1294460:CDS 25.0%
! ATCCAAGAGAATATTATCAA+GGG + chr8_3:52287524-52287543 None:intergenic 25.0%
! AATTTGTAGGATTGAAAAGT+GGG + chr8_3:52287644-52287663 None:intergenic 25.0%
!!! TTTTTTTTTCTTTCCACCAT+TGG + chr8_3:52287781-52287800 None:intergenic 25.0%
! AAATGTGCACTAAACAAAAT+TGG - chr8_3:52287865-52287884 Msa1294460:CDS 25.0%
!! TTTTCTTACCAATAATCTAG+TGG + chr8_3:52288110-52288129 None:intergenic 25.0%
! AATTCTGTCAAAGCAAAATA+AGG + chr8_3:52288209-52288228 None:intergenic 25.0%
!! CAAAGACCGTTTTATAAATA+GGG - chr8_3:52288508-52288527 Msa1294460:intron 25.0%
!!! TGAACTTTGTTGTTAAATGA+AGG - chr8_3:52288596-52288615 Msa1294460:intron 25.0%
!!! GAACTTTGTTGTTAAATGAA+GGG - chr8_3:52288597-52288616 Msa1294460:intron 25.0%
! AACAACAAAATGTGCAATTT+AGG - chr8_3:52288705-52288724 Msa1294460:CDS 25.0%
!! ATTTTTCACTATGTTGGTAT+TGG + chr8_3:52289060-52289079 None:intergenic 25.0%
!! TGTGTAATTTTTCACTATGT+TGG + chr8_3:52289066-52289085 None:intergenic 25.0%
! ATAACATCATAGTGTTAGAT+TGG - chr8_3:52289546-52289565 Msa1294460:CDS 25.0%
! AATCAATTAGACAATTAAGG+GGG + chr8_3:52289667-52289686 None:intergenic 25.0%
ATCATTTCACATCACTCATA+AGG - chr8_3:52287153-52287172 Msa1294460:three_prime_UTR 30.0%
!!! ACATTTTTGGCTCTAACATA+AGG + chr8_3:52287196-52287215 None:intergenic 30.0%
! AGGTAATGATTTTCAACTTC+TGG - chr8_3:52287218-52287237 Msa1294460:CDS 30.0%
! GGTAATGATTTTCAACTTCT+GGG - chr8_3:52287219-52287238 Msa1294460:CDS 30.0%
! TTGATTTGATGTTTAGTTGG+TGG - chr8_3:52287324-52287343 Msa1294460:CDS 30.0%
TTGTTATGAAGCAACAGAAT+AGG - chr8_3:52287434-52287453 Msa1294460:CDS 30.0%
TGTTATGAAGCAACAGAATA+GGG - chr8_3:52287435-52287454 Msa1294460:CDS 30.0%
! ATCCCTTGATAATATTCTCT+TGG - chr8_3:52287519-52287538 Msa1294460:CDS 30.0%
GATCCAAGAGAATATTATCA+AGG + chr8_3:52287525-52287544 None:intergenic 30.0%
TATTCTCTTGGATCTATACA+AGG - chr8_3:52287531-52287550 Msa1294460:CDS 30.0%
CAATTTGTAGGATTGAAAAG+TGG + chr8_3:52287645-52287664 None:intergenic 30.0%
!! ATTTTATAATTTGTAGGGGC+AGG - chr8_3:52287841-52287860 Msa1294460:CDS 30.0%
! TATGATTTTGAACAGAGATG+TGG - chr8_3:52287950-52287969 Msa1294460:CDS 30.0%
AAGCTGTATTTAATCCAACA+AGG - chr8_3:52288007-52288026 Msa1294460:CDS 30.0%
TTATAAAACGGTCTTTGCTA+AGG + chr8_3:52288505-52288524 None:intergenic 30.0%
! GCAAAGACCGTTTTATAAAT+AGG - chr8_3:52288507-52288526 Msa1294460:intron 30.0%
GGTCGAACAAAATTTATGTA+GGG - chr8_3:52288538-52288557 Msa1294460:intron 30.0%
TTGTTAAATGAAGGGAAACT+TGG - chr8_3:52288605-52288624 Msa1294460:intron 30.0%
TGTTAAATGAAGGGAAACTT+GGG - chr8_3:52288606-52288625 Msa1294460:intron 30.0%
ACAGCAATTCAAGATGAATT+TGG - chr8_3:52289017-52289036 Msa1294460:intron 30.0%
!!! AAAGGAGTAAACTTGTTTTG+TGG + chr8_3:52289095-52289114 None:intergenic 30.0%
ACAAAACAAGTTTACTCCTT+TGG - chr8_3:52289094-52289113 Msa1294460:intron 30.0%
TACATTATCTTTGAGTCCAA+AGG - chr8_3:52289493-52289512 Msa1294460:intron 30.0%
AGTCAATTAACTTAAGCCTT+TGG + chr8_3:52289512-52289531 None:intergenic 30.0%
! TAGAACAGATTTTGTTCCTG+CGG + chr8_3:52286993-52287012 None:intergenic 35.0%
AAATGATTCAGAACGAGTTC+TGG + chr8_3:52287140-52287159 None:intergenic 35.0%
TGTTAGAGCCAAAAATGTTC+AGG - chr8_3:52287198-52287217 Msa1294460:exon 35.0%
!! TGATGTTTAGTTGGTGGATA+AGG - chr8_3:52287330-52287349 Msa1294460:CDS 35.0%
!! GGATAGTGCTTTGAAAGATA+TGG - chr8_3:52287408-52287427 Msa1294460:CDS 35.0%
AGGATTGAAAAGTGGGTATA+GGG + chr8_3:52287637-52287656 None:intergenic 35.0%
TAGGATTGAAAAGTGGGTAT+AGG + chr8_3:52287638-52287657 None:intergenic 35.0%
!!! CATGCTGTTTTGCAATTTGT+AGG + chr8_3:52287657-52287676 None:intergenic 35.0%
!! CACAAACTTGTTTTCACCAT+TGG - chr8_3:52287717-52287736 Msa1294460:CDS 35.0%
! TTTTCACCATTGGATCAAGT+GGG - chr8_3:52287727-52287746 Msa1294460:CDS 35.0%
GTGGGATATTGACATATTGT+AGG - chr8_3:52287745-52287764 Msa1294460:CDS 35.0%
TGTAGGACTTATTGATCCAA+TGG - chr8_3:52287762-52287781 Msa1294460:CDS 35.0%
! ATTTTGAACAGAGATGTGGT+AGG - chr8_3:52287954-52287973 Msa1294460:CDS 35.0%
! ATGACCAAATAGCTCTATTG+AGG - chr8_3:52287981-52288000 Msa1294460:CDS 35.0%
GTATTTAATCCAACAAGGCT+TGG - chr8_3:52288012-52288031 Msa1294460:CDS 35.0%
ACAAGAAGCCACTAGATTAT+TGG - chr8_3:52288099-52288118 Msa1294460:intron 35.0%
GGTAAGAAAAACATCACACA+TGG - chr8_3:52288120-52288139 Msa1294460:intron 35.0%
TCGGGTCCCTATTTATAAAA+CGG + chr8_3:52288517-52288536 None:intergenic 35.0%
! TTTTATAAATAGGGACCCGA+GGG - chr8_3:52288517-52288536 Msa1294460:intron 35.0%
! ATAAATTTTGTTCGACCCTC+GGG + chr8_3:52288535-52288554 None:intergenic 35.0%
! CATAAATTTTGTTCGACCCT+CGG + chr8_3:52288536-52288555 None:intergenic 35.0%
GGGTCGAACAAAATTTATGT+AGG - chr8_3:52288537-52288556 Msa1294460:intron 35.0%
!!! TTGCACATTTTGTTGTTGTC+TGG + chr8_3:52288702-52288721 None:intergenic 35.0%
!!! AGACTCTTTGAAGCTTTTCT+TGG - chr8_3:52288918-52288937 Msa1294460:intron 35.0%
! TTCTTGGTTCTTCATCAATC+TGG - chr8_3:52288934-52288953 Msa1294460:intron 35.0%
GTGTGAATGTTATCCTTACA+AGG + chr8_3:52288969-52288988 None:intergenic 35.0%
GATGATTTCGCTGCATAAAA+TGG + chr8_3:52289149-52289168 None:intergenic 35.0%
AACAAGGTGAATGTGGAATT+AGG - chr8_3:52289269-52289288 Msa1294460:CDS 35.0%
!! TGATTTGTTGCCTGATACTA+AGG - chr8_3:52289343-52289362 Msa1294460:CDS 35.0%
TCTTCAAAGTCCTTAGTATC+AGG + chr8_3:52289356-52289375 None:intergenic 35.0%
! AATGAAAATGCTGCTACTTC+TGG - chr8_3:52289419-52289438 Msa1294460:intron 35.0%
! ATGAAAATGCTGCTACTTCT+GGG - chr8_3:52289420-52289439 Msa1294460:intron 35.0%
ATTTCCTGTATGCTACACTA+TGG - chr8_3:52289600-52289619 Msa1294460:CDS 35.0%
GCATTGCAATAGAAAGGATT+TGG + chr8_3:52289779-52289798 None:intergenic 35.0%
! AGAACAGATTTTGTTCCTGC+GGG + chr8_3:52286992-52287011 None:intergenic 40.0%
CAACAATGATGCAAGAGATG+TGG - chr8_3:52287047-52287066 Msa1294460:three_prime_UTR 40.0%
ATCACTCATAAGGTTCCTGT+TGG - chr8_3:52287163-52287182 Msa1294460:three_prime_UTR 40.0%
!! ACATAAGGAGTATCACCAAC+AGG + chr8_3:52287181-52287200 None:intergenic 40.0%
!! TTAGTTGGTGGATAAGGATC+CGG - chr8_3:52287336-52287355 Msa1294460:CDS 40.0%
! AGAGAGCAATTCCGTTGTTT+TGG - chr8_3:52287359-52287378 Msa1294460:CDS 40.0%
!! GAGAGCAATTCCGTTGTTTT+GGG - chr8_3:52287360-52287379 Msa1294460:CDS 40.0%
! GTTTTCACCATTGGATCAAG+TGG - chr8_3:52287726-52287745 Msa1294460:CDS 40.0%
CAATATCCCACTTGATCCAA+TGG + chr8_3:52287736-52287755 None:intergenic 40.0%
AGGACTTATTGATCCAATGG+TGG - chr8_3:52287765-52287784 Msa1294460:CDS 40.0%
TGTGCCTCAATAGAGCTATT+TGG + chr8_3:52287988-52288007 None:intergenic 40.0%
ACAAAGACTGCTAGATCTCA+AGG - chr8_3:52288052-52288071 Msa1294460:CDS 40.0%
CAAAGACTGCTAGATCTCAA+GGG - chr8_3:52288053-52288072 Msa1294460:CDS 40.0%
! AGGGAAGAAGTTTCAAGTCT+CGG - chr8_3:52288072-52288091 Msa1294460:CDS 40.0%
TCAAAACCTTATGGTCCGTT+TGG - chr8_3:52288449-52288468 Msa1294460:intron 40.0%
! GTTTTATAAATAGGGACCCG+AGG - chr8_3:52288516-52288535 Msa1294460:intron 40.0%
GTTTCATGTAAGCCAGTTTC+TGG + chr8_3:52288569-52288588 None:intergenic 40.0%
AAATGAAGGGAAACTTGGGA+TGG - chr8_3:52288610-52288629 Msa1294460:intron 40.0%
AATGAAGGGAAACTTGGGAT+GGG - chr8_3:52288611-52288630 Msa1294460:intron 40.0%
GGCATTTGTCTGATGAAACA+AGG - chr8_3:52288726-52288745 Msa1294460:CDS 40.0%
TAACTGCAGGTTTGACTCTA+TGG + chr8_3:52288779-52288798 None:intergenic 40.0%
!! CATTTGCTGTGCTCTTTCAT+AGG + chr8_3:52288838-52288857 None:intergenic 40.0%
TCCTCCTCTGTTCATCATTT+CGG + chr8_3:52288877-52288896 None:intergenic 40.0%
ATGTTATCCTTACAAGGCTG+AGG + chr8_3:52288963-52288982 None:intergenic 40.0%
GTTGATGTTGTTCTCATTGG+CGG + chr8_3:52288999-52289018 None:intergenic 40.0%
GCTGTTGATGTTGTTCTCAT+TGG + chr8_3:52289002-52289021 None:intergenic 40.0%
TTAAGCGAGTTGTTCACCAA+AGG + chr8_3:52289113-52289132 None:intergenic 40.0%
GATTTCGCTGCATAAAATGG+CGG + chr8_3:52289146-52289165 None:intergenic 40.0%
TGCAGCGAAATCATCTTTCA+AGG - chr8_3:52289154-52289173 Msa1294460:intron 40.0%
CTGAGAGACTTAAGAGAACA+AGG - chr8_3:52289201-52289220 Msa1294460:CDS 40.0%
AGACTTAAGAGAACAAGGTC+TGG - chr8_3:52289206-52289225 Msa1294460:CDS 40.0%
!! TGCTATTCTTGCTGCTGTTT+TGG - chr8_3:52289376-52289395 Msa1294460:intron 40.0%
!!! GCTATTCTTGCTGCTGTTTT+GGG - chr8_3:52289377-52289396 Msa1294460:intron 40.0%
!!! CTATTCTTGCTGCTGTTTTG+GGG - chr8_3:52289378-52289397 Msa1294460:intron 40.0%
GCTCCAAGAAAATTGACAAG+AGG - chr8_3:52289447-52289466 Msa1294460:intron 40.0%
! CCTCCTCTTGTCAATTTTCT+TGG + chr8_3:52289453-52289472 None:intergenic 40.0%
CCAAGAAAATTGACAAGAGG+AGG - chr8_3:52289450-52289469 Msa1294460:intron 40.0%
TGTTAGATTGGAGATGAGCT+TGG - chr8_3:52289558-52289577 Msa1294460:CDS 40.0%
ACACTATGGCAGTTCTACTA+CGG - chr8_3:52289614-52289633 Msa1294460:CDS 40.0%
GTTTACAAGGTACAAGGCAA+AGG + chr8_3:52289709-52289728 None:intergenic 40.0%
TGCCTTGTACCTTGTAAACA+AGG - chr8_3:52289710-52289729 Msa1294460:five_prime_UTR 40.0%
!! TGCCTTGTTTACAAGGTACA+AGG + chr8_3:52289715-52289734 None:intergenic 40.0%
!! GTCAATGTGCCTTGTTTACA+AGG + chr8_3:52289722-52289741 None:intergenic 40.0%
TTCCTGCGGGGAAACAAAAA+TGG + chr8_3:52286979-52286998 None:intergenic 45.0%
! GAACAGATTTTGTTCCTGCG+GGG + chr8_3:52286991-52287010 None:intergenic 45.0%
!! GAAGAAGGTGCTGATTTGGA+GGG + chr8_3:52287094-52287113 None:intergenic 45.0%
!! TGAAGAAGGTGCTGATTTGG+AGG + chr8_3:52287095-52287114 None:intergenic 45.0%
!! AGGTGAAGAAGGTGCTGATT+TGG + chr8_3:52287098-52287117 None:intergenic 45.0%
! AGAGGTTTTGCAGGTGAAGA+AGG + chr8_3:52287109-52287128 None:intergenic 45.0%
TCTTCACCTGCAAAACCTCT+TGG - chr8_3:52287109-52287128 Msa1294460:three_prime_UTR 45.0%
! GAAACACCAAGAGGTTTTGC+AGG + chr8_3:52287118-52287137 None:intergenic 45.0%
AACAACGGAATTGCTCTCTC+CGG + chr8_3:52287358-52287377 None:intergenic 45.0%
!!! AGCAATTCCGTTGTTTTGGG+CGG - chr8_3:52287363-52287382 Msa1294460:CDS 45.0%
TTTATCGCCGCCCAAAACAA+CGG + chr8_3:52287373-52287392 None:intergenic 45.0%
GATAAATGCGGGAGATAGAG+TGG - chr8_3:52287387-52287406 Msa1294460:CDS 45.0%
! CATTGAAAGCCAAGCCTTGT+TGG + chr8_3:52288024-52288043 None:intergenic 45.0%
! CAACAAGGCTTGGCTTTCAA+TGG - chr8_3:52288022-52288041 Msa1294460:CDS 45.0%
! GAAGAAGTTTCAAGTCTCGG+TGG - chr8_3:52288075-52288094 Msa1294460:CDS 45.0%
ACCTTATGGTCCGTTTGGTT+CGG - chr8_3:52288454-52288473 Msa1294460:intron 45.0%
TCCAAAAACCCCGAACCAAA+CGG + chr8_3:52288467-52288486 None:intergenic 45.0%
!!! TTTGGTTCGGGGTTTTTGGA+GGG - chr8_3:52288467-52288486 Msa1294460:intron 45.0%
GTCAAACCTGCAGTTACAGA+TGG - chr8_3:52288783-52288802 Msa1294460:intron 45.0%
AGATGAGAATCTGAGCCTCT+TGG + chr8_3:52288810-52288829 None:intergenic 45.0%
GAGTCCGAAATGATGAACAG+AGG - chr8_3:52288870-52288889 Msa1294460:intron 45.0%
TCCGAAATGATGAACAGAGG+AGG - chr8_3:52288873-52288892 Msa1294460:intron 45.0%
AATGATGAACAGAGGAGGAG+TGG - chr8_3:52288878-52288897 Msa1294460:intron 45.0%
GGATGATGTGAACAGCAACA+AGG - chr8_3:52289253-52289272 Msa1294460:CDS 45.0%
GAACAGCAACAAGGTGAATG+TGG - chr8_3:52289262-52289281 Msa1294460:CDS 45.0%
AATGTGGAATTAGGTGTGCC+TGG - chr8_3:52289278-52289297 Msa1294460:CDS 45.0%
ATGTGGAATTAGGTGTGCCT+GGG - chr8_3:52289279-52289298 Msa1294460:CDS 45.0%
AATTGACAAGAGGAGGCTCA+AGG - chr8_3:52289457-52289476 Msa1294460:intron 45.0%
ACTGCCATAGTGTAGCATAC+AGG + chr8_3:52289607-52289626 None:intergenic 45.0%
ATGGCAGTTCTACTACGGAT+AGG - chr8_3:52289619-52289638 Msa1294460:CDS 45.0%
! AGGAGTAGCCATCTGCATTT+TGG - chr8_3:52289639-52289658 Msa1294460:CDS 45.0%
!!! TTTAATTTAATCATAAAAAT+TGG + chr8_3:52287571-52287590 None:intergenic 5.0%
!! GTCCATTTTTGTTTCCCCGC+AGG - chr8_3:52286974-52286993 Msa1294460:three_prime_UTR 50.0%
! GATTTGGAGGGTCTGAAACC+TGG + chr8_3:52287082-52287101 None:intergenic 50.0%
!! CGAGTTCTGGAAACACCAAG+AGG + chr8_3:52287127-52287146 None:intergenic 50.0%
!! GTTTTGGGCGGCGATAAATG+CGG - chr8_3:52287375-52287394 Msa1294460:CDS 50.0%
! TTTTGGGCGGCGATAAATGC+GGG - chr8_3:52287376-52287395 Msa1294460:CDS 50.0%
! CCTTATGGTCCGTTTGGTTC+GGG - chr8_3:52288455-52288474 Msa1294460:intron 50.0%
! CTTATGGTCCGTTTGGTTCG+GGG - chr8_3:52288456-52288475 Msa1294460:intron 50.0%
!!! TCCGTTTGGTTCGGGGTTTT+TGG - chr8_3:52288463-52288482 Msa1294460:intron 50.0%
!!! GTTTGGTTCGGGGTTTTTGG+AGG - chr8_3:52288466-52288485 Msa1294460:intron 50.0%
!!! TTGGTTCGGGGTTTTTGGAG+GGG - chr8_3:52288468-52288487 Msa1294460:intron 50.0%
TGTAGGGCTACACCAGAAAC+TGG - chr8_3:52288554-52288573 Msa1294460:intron 50.0%
CTTGGTCCATCTGTAACTGC+AGG + chr8_3:52288792-52288811 None:intergenic 50.0%
GCAGTTACAGATGGACCAAG+AGG - chr8_3:52288792-52288811 Msa1294460:intron 50.0%
ACAAGGTCTGGAAATGCTGC+AGG - chr8_3:52289218-52289237 Msa1294460:CDS 50.0%
TGCTGCAGGATTACTGAGAG+TGG - chr8_3:52289232-52289251 Msa1294460:CDS 50.0%
TGCCTGGGAACAAAGCAAGA+AGG - chr8_3:52289294-52289313 Msa1294460:CDS 50.0%
! AGCCTTCTTGCTTTGTTCCC+AGG + chr8_3:52289299-52289318 None:intergenic 50.0%
AGGGGGATCCAAAATGCAGA+TGG + chr8_3:52289650-52289669 None:intergenic 50.0%
GAGATGTGGAATGCTCCTCC+AGG - chr8_3:52287061-52287080 Msa1294460:three_prime_UTR 55.0%
! TTGGAGGGTCTGAAACCTGG+AGG + chr8_3:52287079-52287098 None:intergenic 55.0%
CCCGAACCAAACGGACCATA+AGG + chr8_3:52288458-52288477 None:intergenic 55.0%
!! TTCGGGGTTTTTGGAGGGGA+GGG - chr8_3:52288472-52288491 Msa1294460:intron 55.0%
TAGACAAAGCGCACGGCGAT+AGG + chr8_3:52288676-52288695 None:intergenic 55.0%
CTGGAGCTAGACAAAGCGCA+CGG + chr8_3:52288683-52288702 None:intergenic 55.0%
TGAACAGAGGAGGAGTGGAC+AGG - chr8_3:52288883-52288902 Msa1294460:intron 55.0%
! CTGGCAACCTCAGCCTTGTA+AGG - chr8_3:52288953-52288972 Msa1294460:intron 55.0%
!! GTTCGGGGTTTTTGGAGGGG+AGG - chr8_3:52288471-52288490 Msa1294460:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 52286933 52289801 52286933 ID=Msa1294460;Name=Msa1294460
chr8_3 mRNA 52286933 52289801 52286933 ID=Msa1294460-mRNA-1;Parent=Msa1294460;Name=Msa1294460-mRNA-1;_AED=0.05;_eAED=0.05;_QI=119|1|1|1|1|1|4|281|479
chr8_3 exon 52286933 52288116 52286933 ID=Msa1294460-mRNA-1:exon:14830;Parent=Msa1294460-mRNA-1
chr8_3 exon 52288614 52288769 52288614 ID=Msa1294460-mRNA-1:exon:14829;Parent=Msa1294460-mRNA-1
chr8_3 exon 52289182 52289394 52289182 ID=Msa1294460-mRNA-1:exon:14828;Parent=Msa1294460-mRNA-1
chr8_3 exon 52289515 52289801 52289515 ID=Msa1294460-mRNA-1:exon:14827;Parent=Msa1294460-mRNA-1
chr8_3 five_prime_UTR 52289683 52289801 52289683 ID=Msa1294460-mRNA-1:five_prime_utr;Parent=Msa1294460-mRNA-1
chr8_3 CDS 52289515 52289682 52289515 ID=Msa1294460-mRNA-1:cds;Parent=Msa1294460-mRNA-1
chr8_3 CDS 52289182 52289394 52289182 ID=Msa1294460-mRNA-1:cds;Parent=Msa1294460-mRNA-1
chr8_3 CDS 52288614 52288769 52288614 ID=Msa1294460-mRNA-1:cds;Parent=Msa1294460-mRNA-1
chr8_3 CDS 52287214 52288116 52287214 ID=Msa1294460-mRNA-1:cds;Parent=Msa1294460-mRNA-1
chr8_3 three_prime_UTR 52286933 52287213 52286933 ID=Msa1294460-mRNA-1:three_prime_utr;Parent=Msa1294460-mRNA-1
Gene Sequence

>Msa1294460

ATGATGCAAGAGATGTGGAATGCTCCTCCAGGTTTCAGACCCTCCAAATCAGCACCTTCTTCACCTGCAAAACCTCTTGGTGTTTCCAGAACTCGTTCTGAATCATTTCACATCACTCATAAGGTTCCTGTTGGTGATACTCCTTATGTTAGAGCCAAAAATGTTCAGTTGGTGGATAAGGATCCGGAGAGAGCAATTCCGTTGTTTTGGGCGGCGATAAATGCGGGAGATAGAGTGGATAGTGCTTTGAAAGATATGGCTATTGTTATGAAGCAACAGAATAGGGCTGAAGAAGCTATTGAAGCTATTAAATCACTTCGAAGTAGATGCTCAGATCAAGCACAAGAATCCCTTGATAATATTCTCTTGGATCTATACAAGAGATGTGGTAGGCTTGATGACCAAATAGCTCTATTGAGGCACAAGCTGTATTTAATCCAACAAGGCTTGGCTTTCAATGGCAAGCGCACAAAGACTGCTAGATCTCAAGGGAAGAAGTTTCAAGTCTCGGTGGAACAAGAAGCCACTAGATTATTGGGAAACTTGGGATGGGCACTGATGCAACAAAACAACTACATAGAAGCAGAAGAAGCCTATCGCCGTGCGCTTTGTCTAGCTCCAGACAACAACAAAATGTGCAATTTAGGCATTTGTCTGATGAAACAAGGAAGAATAGCTGAAGCAAAAGAAACTCTCCATAGAGTCAAACCTGCAGTTACAGATGGACCAAGAGGCTCAGATTCTCATCTGAAAGCCTATGAAAGAGCACAGCAAATGCTCAAAGATCTCGAGTCCGAAATGATGAACAGAGGAGGAGTGGACAGGCTTGAACAAAGTAGACTCTTTGAAGCTTTTCTTGGTTCTTCATCAATCTGGCAACCTCAGCCTTGTAAGGATAACATTCACACAAGCTTGCCGCCAATGAGAACAACATCAACAGCAATTCAAGATGAATTTGGTGATGAGAACATCAACTCCAATACCAACATAGTGAAAAATTACACAGCACAGCCACAAAACAAGTTTACTCCTTTGGTGAACAACTCGCTTAACGTTGCAGCTCCGCCATTTTATGCAGCGAAATCATCTTTCAAGGAATCAAATGAGAATTTGAATTTGTCTGAGAGACTTAAGAGAACAAGGTCTGGAAATGCTGCAGGATTACTGAGAGTGGATGATGTGAACAGCAACAAGGTGAATGTGGAATTAGGTGTGCCTGGGAACAAAGCAAGAAGGCTTTCGTTTGAGAAGAATAAGTTGTGTGATTTGTTGCCTGATACTAAGGACTTTGAAGATGCTATTCTTGCTGCTGTTTTGGGGTCTTCAAATGAGTTAGAGAATGAAAATGCTGCTACTTCTGGGATTTGCTCCAAGAAAATTGACAAGAGGAGGCTCAAGGTTTTTCAAGATATTACATTATCTTTGAGTCCAAAGGCTTAA

Protein sequence

>Msa1294460

MMQEMWNAPPGFRPSKSAPSSPAKPLGVSRTRSESFHITHKVPVGDTPYVRAKNVQLVDKDPERAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLRHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEEAYRRALCLAPDNNKMCNLGICLMKQGRIAEAKETLHRVKPAVTDGPRGSDSHLKAYERAQQMLKDLESEMMNRGGVDRLEQSRLFEAFLGSSSIWQPQPCKDNIHTSLPPMRTTSTAIQDEFGDENINSNTNIVKNYTAQPQNKFTPLVNNSLNVAAPPFYAAKSSFKESNENLNLSERLKRTRSGNAAGLLRVDDVNSNKVNVELGVPGNKARRLSFEKNKLCDLLPDTKDFEDAILAAVLGSSNELENENAATSGICSKKIDKRRLKVFQDITLSLSPKA*