AlfalfaGEDB | Msa0461550

M. sativa cultivar zhongmu-4 / Msa0461550

KEGG: K03364
GO: -
PFAM: PF12894.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0461550	XP_024633558.1	99.589	487	1	1	1	487	1	486	0.0	990

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0461550	sp\|Q8LPL5\|FZR3_ARATH	79.226	491	88	6	1	487	1	481	0.0	726

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0461550	A0A396ISC0	99.589	487	1	1	1	487	1	486	0.0	990

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006840	Msa0461550	0.841434	4.762903e-58	-8.615850e-47
Msa0015570	Msa0461550	0.832229	1.065018e-55	-8.615850e-47
Msa0016530	Msa0461550	0.838964	2.103212e-57	-8.615850e-47
Msa0018920	Msa0461550	0.859078	5.305242e-63	-8.615850e-47
Msa0020540	Msa0461550	0.809604	1.742662e-50	-8.615850e-47
Msa0027800	Msa0461550	0.825855	3.733083e-54	-8.615850e-47
Msa0030070	Msa0461550	0.857932	1.164754e-62	-8.615850e-47
Msa0030690	Msa0461550	0.830568	2.729135e-55	-8.615850e-47
Msa0032970	Msa0461550	0.820484	6.694201e-53	-8.615850e-47
Msa0032980	Msa0461550	0.836935	6.990711e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0461550	MtrunA17_Chr3g0111961	99.589	487	1	1	1	487	1	486	0.0	990
Msa0461550	MtrunA17_Chr4g0057131	62.754	443	152	6	48	487	43	475	0.0	550
Msa0461550	MtrunA17_Chr3g0098921	44.342	433	207	9	57	474	33	446	9.85e-120	358
Msa0461550	MtrunA17_Chr5g0395821	46.099	423	200	8	51	464	26	429	1.96e-119	357
Msa0461550	MtrunA17_Chr7g0267961	51.360	331	147	5	150	466	103	433	3.88e-115	347
Msa0461550	MtrunA17_Chr7g0233651	47.590	332	160	5	155	472	92	423	7.78e-104	317
Msa0461550	MtrunA17_Chr7g0234591	47.305	334	160	6	159	476	99	432	1.40e-101	311
Msa0461550	MtrunA17_Chr7g0228191	48.065	310	151	4	167	466	13	322	5.38e-101	306
Msa0461550	MtrunA17_Chr7g0235181	42.824	432	207	10	44	464	3	405	2.08e-100	308
Msa0461550	MtrunA17_Chr2g0308501	42.988	328	177	5	170	487	8	335	1.23e-92	285

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0461550	AT5G13840.1	79.226	491	88	6	1	487	1	481	0.0	726
Msa0461550	AT5G13840.2	79.226	491	88	6	1	487	1	481	0.0	726
Msa0461550	AT4G22910.1	62.299	435	149	5	56	487	61	483	0.0	546
Msa0461550	AT4G11920.1	62.332	446	147	6	48	487	45	475	0.0	531
Msa0461550	AT4G33260.1	43.823	429	206	7	49	464	16	422	3.02e-116	349
Msa0461550	AT4G33270.1	43.243	444	206	9	49	472	26	443	1.50e-115	348
Msa0461550	AT5G27570.1	51.111	315	145	3	159	464	110	424	2.07e-112	340
Msa0461550	AT4G33260.2	42.657	429	211	7	49	464	16	422	1.20e-110	335
Msa0461550	AT5G27080.1	49.841	315	149	3	159	464	102	416	9.26e-110	333
Msa0461550	AT5G26900.1	48.734	316	154	3	157	464	103	418	2.33e-107	327

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Find 154 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCCTGTATCTTTAACT+GGG	0.587939	3_3:+59838431	None:intergenic
AACCAGTCACCGGTTAAAGA+AGG	0.514252	3_3:-59841098	Msa0461550:CDS
AACCTCAACATATTCTTACT+CGG	0.518937	3_3:+59840966	None:intergenic
AACCTTCTCGTATCTGGAGG+TGG	0.572049	3_3:-59839163	Msa0461550:CDS
AAGAAGGTCAGAACAATGGG+AGG	0.649698	3_3:-59839677	Msa0461550:CDS
AAGATAGAAACTTACCTTGT+GGG	0.446408	3_3:+59840821	None:intergenic
AAGGCCTGTATCTTTAACTG+GGG	0.685695	3_3:+59838432	None:intergenic
AATAATACCTTTGCTAGTGA+TGG	0.483310	3_3:+59838893	None:intergenic
AATACTCTAGCAGTTGGACT+TGG	0.567179	3_3:-59840048	Msa0461550:CDS
AATATCGAAGGCGAAGAAAA+AGG	0.319187	3_3:+59840915	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCTCAACATATTCTTACT+CGG	+	chr3_3:59838730-59838749	None:intergenic	30.0%
GAATATGTTGAGGTTTAAGA+CGG	-	chr3_3:59838735-59838754	Msa0461550:CDS	30.0%
TCATTTCTTCCAAATATCGA+AGG	+	chr3_3:59838793-59838812	None:intergenic	30.0%
TCGATATTTGGAAGAAATGA+TGG	-	chr3_3:59838793-59838812	Msa0461550:intron	30.0%
CGATATTTGGAAGAAATGAT+GGG	-	chr3_3:59838794-59838813	Msa0461550:intron	30.0%
AAGATAGAAACTTACCTTGT+GGG	+	chr3_3:59838875-59838894	None:intergenic	30.0%
AAAGATAGAAACTTACCTTG+TGG	+	chr3_3:59838876-59838895	None:intergenic	30.0%
TATGCTATGACTCTATCTTA+GGG	+	chr3_3:59839075-59839094	None:intergenic	30.0%
AAAACTAGGATTGTCATGAT+TGG	+	chr3_3:59839140-59839159	None:intergenic	30.0%
AATCAACTCATAACCAGATT+AGG	+	chr3_3:59839384-59839403	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	59838204	59841511	59838204	ID=Msa0461550;Name=Msa0461550
chr3_3	mRNA	59838204	59841511	59838204	ID=Msa0461550-mRNA-1;Parent=Msa0461550;Name=Msa0461550-mRNA-1;_AED=0.14;_eAED=0.14;_QI=166\|1\|1\|1\|1\|1\|10\|198\|487
chr3_3	exon	59838204	59838455	59838204	ID=Msa0461550-mRNA-1:exon:12468;Parent=Msa0461550-mRNA-1
chr3_3	exon	59838549	59838617	59838549	ID=Msa0461550-mRNA-1:exon:12467;Parent=Msa0461550-mRNA-1
chr3_3	exon	59838729	59838791	59838729	ID=Msa0461550-mRNA-1:exon:12466;Parent=Msa0461550-mRNA-1
chr3_3	exon	59838901	59839002	59838901	ID=Msa0461550-mRNA-1:exon:12465;Parent=Msa0461550-mRNA-1
chr3_3	exon	59839087	59839281	59839087	ID=Msa0461550-mRNA-1:exon:12464;Parent=Msa0461550-mRNA-1
chr3_3	exon	59839379	59839441	59839379	ID=Msa0461550-mRNA-1:exon:12463;Parent=Msa0461550-mRNA-1
chr3_3	exon	59839541	59839720	59839541	ID=Msa0461550-mRNA-1:exon:12462;Parent=Msa0461550-mRNA-1
chr3_3	exon	59839820	59839924	59839820	ID=Msa0461550-mRNA-1:exon:12461;Parent=Msa0461550-mRNA-1
chr3_3	exon	59840011	59840133	59840011	ID=Msa0461550-mRNA-1:exon:12460;Parent=Msa0461550-mRNA-1
chr3_3	exon	59840836	59841511	59840836	ID=Msa0461550-mRNA-1:exon:12459;Parent=Msa0461550-mRNA-1
chr3_3	five_prime_UTR	59841346	59841511	59841346	ID=Msa0461550-mRNA-1:five_prime_utr;Parent=Msa0461550-mRNA-1
chr3_3	CDS	59840836	59841345	59840836	ID=Msa0461550-mRNA-1:cds;Parent=Msa0461550-mRNA-1
chr3_3	CDS	59840011	59840133	59840011	ID=Msa0461550-mRNA-1:cds;Parent=Msa0461550-mRNA-1
chr3_3	CDS	59839820	59839924	59839820	ID=Msa0461550-mRNA-1:cds;Parent=Msa0461550-mRNA-1
chr3_3	CDS	59839541	59839720	59839541	ID=Msa0461550-mRNA-1:cds;Parent=Msa0461550-mRNA-1
chr3_3	CDS	59839379	59839441	59839379	ID=Msa0461550-mRNA-1:cds;Parent=Msa0461550-mRNA-1
chr3_3	CDS	59839087	59839281	59839087	ID=Msa0461550-mRNA-1:cds;Parent=Msa0461550-mRNA-1
chr3_3	CDS	59838901	59839002	59838901	ID=Msa0461550-mRNA-1:cds;Parent=Msa0461550-mRNA-1
chr3_3	CDS	59838729	59838791	59838729	ID=Msa0461550-mRNA-1:cds;Parent=Msa0461550-mRNA-1
chr3_3	CDS	59838549	59838617	59838549	ID=Msa0461550-mRNA-1:cds;Parent=Msa0461550-mRNA-1
chr3_3	CDS	59838402	59838455	59838402	ID=Msa0461550-mRNA-1:cds;Parent=Msa0461550-mRNA-1
chr3_3	three_prime_UTR	59838204	59838401	59838204	ID=Msa0461550-mRNA-1:three_prime_utr;Parent=Msa0461550-mRNA-1

Gene Sequence

>Msa0461550

ATGGAGTCACCACAAGCAAAAAAATCAGGTCTAAACCTCCCAGCAGGGATGTCAACAATAACCTCCCTCCGTCTAGAAACGCTATCAACACCCCCTTCTTCCGCTTCGCCTCGCGCGATCTCAAACCTCTCATCAACACCCTCTCCATCAAAATCCTCCAAGTGTAGTGACAGATTCATACCTTGCAGATCATCTTCAAGACTGCATACATTCGGATTAATCGATAACCAGTCACCGGTTAAAGAAGGGAGTAATGAGGCTTATAATAGGTTGTTGAAATCTGAACTTTTTGGACCTGATTTTGCTTCTCCTTCTTCTTCTCCTGCAGGTTGTGGTGTAGGTTCGCCATTGGTGAGTCCGAGTAAGAATATGTTGAGGTTTAAGACGGAGAGTTGTGGACCTTCTTCGCCTTTTTCTTCGCCTTCGATATTTGGAAGAAATGATGGGTTTTGTAATGAGGGTTCTACTCCTCCTAAGCCTCCTAGGAAAGTTCCTAAGACGCCCCACAAGGTTCTGGATGCTCCTTCACTTCAAGATGACTTTTACTTGAATCTTGTGGATTGGTCCTCACAAAATACTCTAGCAGTTGGACTTGGCACTTGTGTTTATCTCTGGAGTGCTTCAAACAGCAAAGTAACTAAGCTGTGTGACTTGGGGCCTTATGATGGTGTCTGTTCTGTCCAGTGGACCAAGGAGGGTTCCTTCATATCCATTGGTACAAATGGTGGTCAAGTTCAGATTTGGGATGGTACTAAATGCAAGAAGGTCAGAACAATGGGAGGGCATCAAACAAGAACCGGTGTCTTGGCATGGAATTCTCGCATTTTGGCTTCAGGAAGCAGGGATAGGAACATACTTCAGCATGACATGAGGGTTCCAAGCGACTTTATTGGCAAGCTTGTCGGCCACAAATCCGAGGTTTGTGGATTGAAATGGTCCTGTGATGACCGGGAACTTGCTTCTGGTGGTAATGATAATCAGCTATTGGTATGGAATCAGCACTCTCAACAACCAACTTTGAGGCTTACAGAGCACACTGCTGCTGTGAAAGCCATTGCTTGGTCACCTCATCAGAGCAACCTTCTCGTATCTGGAGGTGGAACTGCTGATCGGTGTATTCGTTTCTGGAACACGACAAATGGCCACCAATTGAACTCTGTTGACACTGGAAGCCAGGTGTGTAACCTTGCTTGGAGTAAAAATGTAAATGAGCTAGTGAGTACACATGGTTACTCACAAAATCAAATCATGGTGTGGAAATATCCATCACTAGCAAAGGTTGCAACTCTAACTGGCCACAGCATGAGAGTACTATACCTTGCAATGTCTCCTGATGGTCAGACAATAGTGACTGGTGCTGGGGATGAGACTCTGCGGTTTTGGAATGTTTTCCCATCAATGAAAACACCTGCCCCAGTTAAAGATACAGGCCTTTGGTCACTAGGCCGCACCCAAATCAGATGA

Protein sequence

>Msa0461550

MESPQAKKSGLNLPAGMSTITSLRLETLSTPPSSASPRAISNLSSTPSPSKSSKCSDRFIPCRSSSRLHTFGLIDNQSPVKEGSNEAYNRLLKSELFGPDFASPSSSPAGCGVGSPLVSPSKNMLRFKTESCGPSSPFSSPSIFGRNDGFCNEGSTPPKPPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNTLAVGLGTCVYLWSASNSKVTKLCDLGPYDGVCSVQWTKEGSFISIGTNGGQVQIWDGTKCKKVRTMGGHQTRTGVLAWNSRILASGSRDRNILQHDMRVPSDFIGKLVGHKSEVCGLKWSCDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSNLLVSGGGTADRCIRFWNTTNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSLAKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSMKTPAPVKDTGLWSLGRTQIR*