Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773650 | XP_024639897.1 | 65.893 | 431 | 37 | 6 | 12 | 387 | 884 | 1259 | 2.50e-172 | 525 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773650 | sp|F4K0J3|KN4C_ARATH | 28.736 | 261 | 96 | 9 | 135 | 372 | 1072 | 1265 | 5.54e-11 | 68.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773650 | G7KBM2 | 65.893 | 431 | 37 | 6 | 12 | 387 | 883 | 1258 | 1.48e-172 | 525 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0075530 | Msa0773650 | 0.806121 | 9.593910e-50 | -8.615850e-47 |
| Msa0091360 | Msa0773650 | 0.813064 | 3.092456e-51 | -8.615850e-47 |
| Msa0098410 | Msa0773650 | 0.808685 | 2.742521e-50 | -8.615850e-47 |
| Msa0606100 | Msa0773650 | 0.831648 | 1.482202e-55 | -8.615850e-47 |
| Msa0647050 | Msa0773650 | 0.821663 | 3.582100e-53 | -8.615850e-47 |
| Msa0668900 | Msa0773650 | 0.808169 | 3.534380e-50 | -8.615850e-47 |
| Msa0728780 | Msa0773650 | 0.807449 | 5.026938e-50 | -8.615850e-47 |
| Msa0747740 | Msa0773650 | 0.823132 | 1.632747e-53 | -8.615850e-47 |
| Msa0769730 | Msa0773650 | 0.808939 | 2.420853e-50 | -8.615850e-47 |
| Msa0773630 | Msa0773650 | 0.815057 | 1.123380e-51 | -8.615850e-47 |
| Msa0773650 | Msa0811020 | 0.854580 | 1.119981e-61 | -8.615850e-47 |
| Msa0773650 | Msa1078880 | 0.801141 | 1.035584e-48 | -8.615850e-47 |
| Msa0773650 | Msa1078970 | 0.814515 | 1.481586e-51 | -8.615850e-47 |
| Msa0773650 | Msa1116660 | 0.814265 | 1.682143e-51 | -8.615850e-47 |
| Msa0773650 | Msa1116740 | 0.814645 | 1.386488e-51 | -8.615850e-47 |
| Msa0773650 | Msa1162880 | 0.817502 | 3.189962e-52 | -8.615850e-47 |
| Msa0773650 | Msa1364410 | 0.800811 | 1.209408e-48 | -8.615850e-47 |
| Msa0773650 | Msa1447170 | 0.809397 | 1.930469e-50 | -8.615850e-47 |
| Msa0561560 | Msa0773650 | 0.800165 | 1.637628e-48 | -8.615850e-47 |
| Msa0563740 | Msa0773650 | 0.801387 | 9.221007e-49 | -8.615850e-47 |
| Msa0563980 | Msa0773650 | 0.825457 | 4.639986e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773650 | MtrunA17_Chr5g0427481 | 65.893 | 431 | 37 | 6 | 12 | 387 | 883 | 1258 | 2.85e-176 | 525 |
| Msa0773650 | MtrunA17_Chr3g0132911 | 43.882 | 237 | 82 | 10 | 23 | 212 | 431 | 663 | 1.59e-35 | 138 |
| Msa0773650 | MtrunA17_Chr3g0132901 | 39.474 | 114 | 58 | 6 | 126 | 228 | 350 | 463 | 4.74e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773650 | AT5G60930.2 | 31.034 | 261 | 125 | 10 | 135 | 372 | 1072 | 1300 | 1.98e-16 | 82.0 |
| Msa0773650 | AT5G60930.3 | 28.736 | 261 | 96 | 9 | 135 | 372 | 1072 | 1265 | 5.63e-12 | 68.2 |
| Msa0773650 | AT5G60930.1 | 28.395 | 243 | 85 | 8 | 135 | 354 | 1072 | 1248 | 3.45e-11 | 65.9 |
Find 104 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGTTATTCTTCTCTTTCT+TGG | 0.191071 | 5_2:-48786594 | None:intergenic |
| CTTTCTCTGGTTACCCTTCA+TGG | 0.214207 | 5_2:-48786495 | None:intergenic |
| TTGTTATTCTTCTCTTTCTT+GGG | 0.216563 | 5_2:-48786593 | None:intergenic |
| CTACAATTTATTCGAGTATA+TGG | 0.223204 | 5_2:+48785168 | Msa0773650:CDS |
| AGGCTTCCTCTCGTAAAATT+TGG | 0.233123 | 5_2:-48784287 | None:intergenic |
| AATAATTAATCTCTGGCTTT+GGG | 0.240295 | 5_2:-48786688 | None:intergenic |
| TCAAGGTGCTGAGTTGCTTC+AGG | 0.287475 | 5_2:+48785578 | Msa0773650:CDS |
| AAATAATTAATCTCTGGCTT+TGG | 0.307338 | 5_2:-48786689 | None:intergenic |
| TGATCATCAATTGAAGTTGA+TGG | 0.316995 | 5_2:+48784790 | Msa0773650:CDS |
| GTGGAAGCTCATGCGGTTGC+CGG | 0.320844 | 5_2:+48785472 | Msa0773650:CDS |
| TCAGAATCCATGCGAGATTC+AGG | 0.324996 | 5_2:+48785007 | Msa0773650:CDS |
| TGGTACGTGAGTACCGAATT+CGG | 0.325954 | 5_2:-48786076 | None:intergenic |
| TTGCTTCAGGGTGCATTGAT+TGG | 0.328845 | 5_2:+48785591 | Msa0773650:CDS |
| TGCTTCAGGGTGCATTGATT+GGG | 0.332055 | 5_2:+48785592 | Msa0773650:CDS |
| TTTATCTGCTTCGTCGCTAC+CGG | 0.340675 | 5_2:-48785538 | None:intergenic |
| AGAAGAATTCGGTACGTATA+GGG | 0.344173 | 5_2:+48785779 | Msa0773650:CDS |
| TGTTTGCACACTTTGTTTCC+CGG | 0.346112 | 5_2:-48785491 | None:intergenic |
| CTTTGGTACGCTTGGTTCGC+TGG | 0.375028 | 5_2:+48786026 | Msa0773650:CDS |
| CCCGAAATGGAAAGTACTTT+CGG | 0.385712 | 5_2:+48784254 | None:intergenic |
| GAGAAGAATTCGGTACGTAT+AGG | 0.387152 | 5_2:+48785778 | Msa0773650:CDS |
| GCAAGATGAGTCAATCAAAA+AGG | 0.390586 | 5_2:+48786805 | Msa0773650:CDS |
| ATTTCCGCCATTTCTTTCTC+TGG | 0.395533 | 5_2:-48786508 | None:intergenic |
| ACAATTGTAGCATCAACTTC+GGG | 0.401002 | 5_2:-48786830 | None:intergenic |
| TGGCTATCAAATAGGAAAAT+CGG | 0.415163 | 5_2:+48785141 | Msa0773650:intron |
| ATCAAATACTATCCTTCCAT+TGG | 0.418936 | 5_2:+48786763 | Msa0773650:CDS |
| GTGTCAAAATAATTAATCTC+TGG | 0.419977 | 5_2:-48786695 | None:intergenic |
| AGAAAAGCTCTCTCTGACAT+TGG | 0.422940 | 5_2:+48785645 | Msa0773650:CDS |
| TACGCCGAAGTACCCGAATT+CGG | 0.436567 | 5_2:+48786063 | Msa0773650:CDS |
| TCCGGTACGCGGTATGGGTA+CGG | 0.444918 | 5_2:+48785737 | Msa0773650:CDS |
| GTTCATTCCGGTACGCGGTA+TGG | 0.447348 | 5_2:+48785731 | Msa0773650:intron |
| GCTGAAGCTAACACTGATCA+TGG | 0.452989 | 5_2:+48785618 | Msa0773650:CDS |
| ATTCGGGTACTTCGGCGTAT+TGG | 0.454389 | 5_2:-48786059 | None:intergenic |
| GGTACGTGAGTACCGAATTC+GGG | 0.457839 | 5_2:-48786075 | None:intergenic |
| TTATCTGCTTCGTCGCTACC+GGG | 0.459412 | 5_2:-48785537 | None:intergenic |
| AACAATTGTAGCATCAACTT+CGG | 0.460171 | 5_2:-48786831 | None:intergenic |
| TGGAAGCTCATGCGGTTGCC+GGG | 0.464347 | 5_2:+48785473 | Msa0773650:CDS |
| CAGCACCTTGAGTTGCTAGA+AGG | 0.469056 | 5_2:-48785566 | None:intergenic |
| GCTTGCAGAGCTATGGGAAT+TGG | 0.470287 | 5_2:+48785447 | Msa0773650:CDS |
| TGTTATTCTTCTCTTTCTTG+GGG | 0.471087 | 5_2:-48786592 | None:intergenic |
| GAAATGCGCTTGCAGAGCTA+TGG | 0.472543 | 5_2:+48785440 | Msa0773650:CDS |
| GGCTAAATCAAATGCCATGA+AGG | 0.473277 | 5_2:+48786481 | Msa0773650:intron |
| CAAGGTGCTGAGTTGCTTCA+GGG | 0.476773 | 5_2:+48785579 | Msa0773650:CDS |
| ACCAGCTTGCGTAAGTCATA+AGG | 0.481531 | 5_2:-48785049 | None:intergenic |
| ACATAATTCGCAGTTCATTC+CGG | 0.486328 | 5_2:+48785719 | Msa0773650:intron |
| GCGGTATGGGTACGGGTTCG+CGG | 0.493717 | 5_2:+48785745 | Msa0773650:CDS |
| TAACCATGCTTTGGTACGCT+TGG | 0.493788 | 5_2:+48786018 | Msa0773650:CDS |
| GTTCACTTGAACAGTTGAAA+AGG | 0.494939 | 5_2:+48784753 | Msa0773650:CDS |
| AGAATTTATCTGCAGAGATA+AGG | 0.495317 | 5_2:+48784685 | Msa0773650:CDS |
| TAGTGAAGCAAATGTATATG+AGG | 0.496262 | 5_2:+48786616 | Msa0773650:CDS |
| CGAGATTCAGGATATTATGT+TGG | 0.499161 | 5_2:+48785019 | Msa0773650:CDS |
| TTCATTCCGGTACGCGGTAT+GGG | 0.503467 | 5_2:+48785732 | Msa0773650:CDS |
| TTCTGTAACAAGAACTATTG+AGG | 0.508403 | 5_2:-48786531 | None:intergenic |
| ACGGGTTCGCGGTACGCGAC+AGG | 0.508756 | 5_2:+48785756 | Msa0773650:CDS |
| AATCAGCGGTAACCATGCTT+TGG | 0.512668 | 5_2:+48786009 | Msa0773650:intron |
| TTGAACAGTTGAAAAGGCAG+AGG | 0.514370 | 5_2:+48784759 | Msa0773650:CDS |
| TTAACTCTTGGAATCTCGAA+AGG | 0.514842 | 5_2:-48784307 | None:intergenic |
| TCAAATACTATCCTTCCATT+GGG | 0.515885 | 5_2:+48786764 | Msa0773650:CDS |
| ATAATTAATCTCTGGCTTTG+GGG | 0.517315 | 5_2:-48786687 | None:intergenic |
| TGATCAGTGTTAGCTTCAGC+AGG | 0.524295 | 5_2:-48785615 | None:intergenic |
| TTTACCCATTCATCATCAGT+TGG | 0.531861 | 5_2:-48785229 | None:intergenic |
| GATTCAGGATATTATGTTGG+AGG | 0.531887 | 5_2:+48785022 | Msa0773650:CDS |
| CCGGTACGCGGTATGGGTAC+GGG | 0.532148 | 5_2:+48785738 | Msa0773650:CDS |
| TCCTTATGACTTACGCAAGC+TGG | 0.533843 | 5_2:+48785048 | Msa0773650:CDS |
| GTGATCCAACTGATGATGAA+TGG | 0.537900 | 5_2:+48785224 | Msa0773650:CDS |
| CCGCCATCTTCATCGCAGCC+AGG | 0.541812 | 5_2:+48786557 | Msa0773650:CDS |
| TGATCCAACTGATGATGAAT+GGG | 0.544755 | 5_2:+48785225 | Msa0773650:CDS |
| CTAGCATTCTTGTCTCCCAA+TGG | 0.545255 | 5_2:-48786779 | None:intergenic |
| TACGCGACAGGAGAAGAATT+CGG | 0.545989 | 5_2:+48785768 | Msa0773650:CDS |
| AAATGCGCTTGCAGAGCTAT+GGG | 0.546049 | 5_2:+48785441 | Msa0773650:CDS |
| CGTATAGGGGTATACAGCTT+CGG | 0.546365 | 5_2:+48785793 | Msa0773650:CDS |
| CCCGTACCCATACCGCGTAC+CGG | 0.563616 | 5_2:-48785738 | None:intergenic |
| CACCTTGAGTTGCTAGAAGG+CGG | 0.566818 | 5_2:-48785563 | None:intergenic |
| TAATTAATCTCTGGCTTTGG+GGG | 0.568892 | 5_2:-48786686 | None:intergenic |
| GAAGAATTCGGTACGTATAG+GGG | 0.568903 | 5_2:+48785780 | Msa0773650:CDS |
| CCACGGGCCATGCAAAAGCA+AGG | 0.574400 | 5_2:+48786737 | Msa0773650:CDS |
| CTCTGACATTGGAAATACAC+TGG | 0.575179 | 5_2:+48785656 | Msa0773650:CDS |
| GTTATTCTTCTCTTTCTTGG+GGG | 0.577423 | 5_2:-48786591 | None:intergenic |
| ATAATATCCTGAATCTCGCA+TGG | 0.578434 | 5_2:-48785014 | None:intergenic |
| AGAGCTATGGGAATTGGTTG+TGG | 0.580927 | 5_2:+48785453 | Msa0773650:CDS |
| GGAGGGACTGTAAATGATCC+CGG | 0.581683 | 5_2:+48785519 | Msa0773650:CDS |
| AGGGTAACCAGAGAAAGAAA+TGG | 0.584501 | 5_2:+48786501 | Msa0773650:CDS |
| TCGCAGTTCATTCCGGTACG+CGG | 0.593778 | 5_2:+48785726 | Msa0773650:intron |
| CATTCTTGTCTCCCAATGGA+AGG | 0.597623 | 5_2:-48786775 | None:intergenic |
| TTACCTGGCTGCGATGAAGA+TGG | 0.598769 | 5_2:-48786560 | None:intergenic |
| AAGTGTGCAAACAGAGAAGG+AGG | 0.599970 | 5_2:+48785501 | Msa0773650:CDS |
| GGCTGCGATGAAGATGGCGG+CGG | 0.600824 | 5_2:-48786554 | None:intergenic |
| AGTACCGAATTCGGGTACTT+CGG | 0.602606 | 5_2:-48786067 | None:intergenic |
| CTGAAGCTAACACTGATCAT+GGG | 0.602658 | 5_2:+48785619 | Msa0773650:CDS |
| CAGTTGAAAAGGCAGAGGGA+TGG | 0.603556 | 5_2:+48784764 | Msa0773650:CDS |
| ACAAAGTGTGCAAACAGAGA+AGG | 0.604520 | 5_2:+48785498 | Msa0773650:CDS |
| GCTGAATCAGATGAGTATAG+TGG | 0.612217 | 5_2:+48785202 | Msa0773650:CDS |
| ATTGGTTGTGGAAGCTCATG+CGG | 0.613528 | 5_2:+48785465 | Msa0773650:CDS |
| AATCCCTTTGAAAATACCAC+GGG | 0.619765 | 5_2:+48786721 | Msa0773650:CDS |
| GCTAAATCAAATGCCATGAA+GGG | 0.619881 | 5_2:+48786482 | Msa0773650:CDS |
| GAACCAAGCGTACCAAAGCA+TGG | 0.635775 | 5_2:-48786021 | None:intergenic |
| AACCGCCTTCTAGCAACTCA+AGG | 0.636204 | 5_2:+48785561 | Msa0773650:CDS |
| AAATCCCTTTGAAAATACCA+CGG | 0.638028 | 5_2:+48786720 | Msa0773650:CDS |
| CACGGGCCATGCAAAAGCAA+GGG | 0.651128 | 5_2:+48786738 | Msa0773650:CDS |
| TGAACAGTTGAAAAGGCAGA+GGG | 0.652521 | 5_2:+48784760 | Msa0773650:CDS |
| CCTGGCTGCGATGAAGATGG+CGG | 0.653607 | 5_2:-48786557 | None:intergenic |
| TATGACTTACGCAAGCTGGT+AGG | 0.654600 | 5_2:+48785052 | Msa0773650:CDS |
| GTAACCAGAGAAAGAAATGG+CGG | 0.696801 | 5_2:+48786504 | Msa0773650:CDS |
| TATCTGCAGAGATAAGGACA+TGG | 0.719637 | 5_2:+48784691 | Msa0773650:CDS |
| AGTGTGCAAACAGAGAAGGA+GGG | 0.735653 | 5_2:+48785502 | Msa0773650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTAGAATATTAAAAAG+GGG | - | chr5_2:48784850-48784869 | None:intergenic | 10.0% |
| !!! | ATTTTACTTTTTTTTTCTTC+AGG | + | chr5_2:48784645-48784664 | Msa0773650:intron | 15.0% |
| !!! | GAAAATTTGTTACTTAAATT+TGG | - | chr5_2:48784928-48784947 | None:intergenic | 15.0% |
| !! | AATAAAAACGTAAATAATGA+TGG | - | chr5_2:48785100-48785119 | None:intergenic | 15.0% |
| !!! | TTATTTACGTTTTTATTTTG+TGG | + | chr5_2:48785103-48785122 | Msa0773650:intron | 15.0% |
| !!! | TTTTGTGTTTTTTTAACTCT+TGG | - | chr5_2:48784322-48784341 | None:intergenic | 20.0% |
| !! | AATCTTATCTTGAATAGAAT+TGG | - | chr5_2:48784429-48784448 | None:intergenic | 20.0% |
| !!! | TGAACTATTTAAGATTTGAT+AGG | - | chr5_2:48784580-48784599 | None:intergenic | 20.0% |
| !!! | TTTGTTACTTAAATTTGGAA+AGG | - | chr5_2:48784923-48784942 | None:intergenic | 20.0% |
| !! | ATAAAGTTGTAAAAATAGCA+TGG | - | chr5_2:48784974-48784993 | None:intergenic | 20.0% |
| !!! | TGTTTCTGTTGAAATAATTT+TGG | - | chr5_2:48785346-48785365 | None:intergenic | 20.0% |
| !! | ATAGCTCACTATATTTATTT+AGG | - | chr5_2:48785847-48785866 | None:intergenic | 20.0% |
| !!! | GCTATTGATTGAAATTAAAA+TGG | + | chr5_2:48786219-48786238 | Msa0773650:intron | 20.0% |
| !!! | CATTTTTTATCAAGCATTAT+CGG | + | chr5_2:48786357-48786376 | Msa0773650:intron | 20.0% |
| !! | AGAAGAAAAAAAATAGGAAA+TGG | - | chr5_2:48786455-48786474 | None:intergenic | 20.0% |
| !! | TGGAAAAGAAGAAAAAAAAT+AGG | - | chr5_2:48786461-48786480 | None:intergenic | 20.0% |
| !!! | TATTTTTTTTCTTCTTTTCC+AGG | + | chr5_2:48786460-48786479 | Msa0773650:intron | 20.0% |
| ! | TCGTCAATAAAATTGTTCTT+TGG | + | chr5_2:48784371-48784390 | Msa0773650:intron | 25.0% |
| ! | GTTATTTGACTCTAACAATA+TGG | + | chr5_2:48784510-48784529 | Msa0773650:intron | 25.0% |
| ! | ATTAAAAAGGGGACAAAATA+TGG | - | chr5_2:48784839-48784858 | None:intergenic | 25.0% |
| !! | ACAACTTTATAATTTTGCAG+AGG | + | chr5_2:48784984-48785003 | Msa0773650:intron | 25.0% |
| !! | AAACGTAAATAATGATGGAA+TGG | - | chr5_2:48785095-48785114 | None:intergenic | 25.0% |
| ! | CTACAATTTATTCGAGTATA+TGG | + | chr5_2:48785168-48785187 | Msa0773650:CDS | 25.0% |
| ! | GACATTGAAAATGAAAAAGA+GGG | - | chr5_2:48785687-48785706 | None:intergenic | 25.0% |
| ! | AGACATTGAAAATGAAAAAG+AGG | - | chr5_2:48785688-48785707 | None:intergenic | 25.0% |
| ! | TAAAATGGAATTTCTTCACT+TGG | + | chr5_2:48786234-48786253 | Msa0773650:intron | 25.0% |
| !! | TTGTTATTCTTCTCTTTCTT+GGG | - | chr5_2:48786596-48786615 | None:intergenic | 25.0% |
| !! | ATTGTTATTCTTCTCTTTCT+TGG | - | chr5_2:48786597-48786616 | None:intergenic | 25.0% |
| !!! | AGTGAAGCATTTTCAAATTT+AGG | - | chr5_2:48786665-48786684 | None:intergenic | 25.0% |
| !!! | AATAATTAATCTCTGGCTTT+GGG | - | chr5_2:48786691-48786710 | None:intergenic | 25.0% |
| !! | AAATAATTAATCTCTGGCTT+TGG | - | chr5_2:48786692-48786711 | None:intergenic | 25.0% |
| ! | GTGTCAAAATAATTAATCTC+TGG | - | chr5_2:48786698-48786717 | None:intergenic | 25.0% |
| ATCATGAGAAACATAACAAG+CGG | + | chr5_2:48784485-48784504 | Msa0773650:intron | 30.0% | |
| GTTATCTTTAGCGATTTAAC+TGG | + | chr5_2:48784603-48784622 | Msa0773650:intron | 30.0% | |
| AGAATTTATCTGCAGAGATA+AGG | + | chr5_2:48784685-48784704 | Msa0773650:CDS | 30.0% | |
| TGATCATCAATTGAAGTTGA+TGG | + | chr5_2:48784790-48784809 | Msa0773650:CDS | 30.0% | |
| TGATGGAATGGAATATTTCT+TGG | - | chr5_2:48785083-48785102 | None:intergenic | 30.0% | |
| !!! | TGTGGCTTTTATTGATTCAT+TGG | + | chr5_2:48785121-48785140 | Msa0773650:intron | 30.0% |
| ! | TGATTCATTGGCTATCAAAT+AGG | + | chr5_2:48785133-48785152 | Msa0773650:intron | 30.0% |
| TGGCTATCAAATAGGAAAAT+CGG | + | chr5_2:48785141-48785160 | Msa0773650:intron | 30.0% | |
| GTATTATTACTACTACGAAC+CGG | - | chr5_2:48785825-48785844 | None:intergenic | 30.0% | |
| GAAACTTGGTAGAAGAAATT+AGG | - | chr5_2:48785891-48785910 | None:intergenic | 30.0% | |
| !!! | CTTTTTTTTCAACCAATCAG+CGG | + | chr5_2:48785995-48786014 | Msa0773650:intron | 30.0% |
| CACATAATTCGTGTAATCAA+GGG | - | chr5_2:48786114-48786133 | None:intergenic | 30.0% | |
| TCACATAATTCGTGTAATCA+AGG | - | chr5_2:48786115-48786134 | None:intergenic | 30.0% | |
| TTACACGAATTATGTGACTA+TGG | + | chr5_2:48786118-48786137 | Msa0773650:intron | 30.0% | |
| ! | ACATCTTCAATCTAAAGTGT+CGG | - | chr5_2:48786266-48786285 | None:intergenic | 30.0% |
| TTCTGTAACAAGAACTATTG+AGG | - | chr5_2:48786534-48786553 | None:intergenic | 30.0% | |
| TGTTATTCTTCTCTTTCTTG+GGG | - | chr5_2:48786595-48786614 | None:intergenic | 30.0% | |
| TAGTGAAGCAAATGTATATG+AGG | + | chr5_2:48786616-48786635 | Msa0773650:CDS | 30.0% | |
| !! | GAAGCATTTTCAAATTTAGG+AGG | - | chr5_2:48786662-48786681 | None:intergenic | 30.0% |
| !! | ATAATTAATCTCTGGCTTTG+GGG | - | chr5_2:48786690-48786709 | None:intergenic | 30.0% |
| ! | AAATCCCTTTGAAAATACCA+CGG | + | chr5_2:48786720-48786739 | Msa0773650:CDS | 30.0% |
| ATCAAATACTATCCTTCCAT+TGG | + | chr5_2:48786763-48786782 | Msa0773650:CDS | 30.0% | |
| TCAAATACTATCCTTCCATT+GGG | + | chr5_2:48786764-48786783 | Msa0773650:CDS | 30.0% | |
| AACAATTGTAGCATCAACTT+CGG | - | chr5_2:48786834-48786853 | None:intergenic | 30.0% | |
| TTAACTCTTGGAATCTCGAA+AGG | - | chr5_2:48784310-48784329 | None:intergenic | 35.0% | |
| GTTCACTTGAACAGTTGAAA+AGG | + | chr5_2:48784753-48784772 | Msa0773650:CDS | 35.0% | |
| TCAGAACATCAGTAAAGTCA+AGG | - | chr5_2:48784887-48784906 | None:intergenic | 35.0% | |
| ATAATATCCTGAATCTCGCA+TGG | - | chr5_2:48785017-48785036 | None:intergenic | 35.0% | |
| CGAGATTCAGGATATTATGT+TGG | + | chr5_2:48785019-48785038 | Msa0773650:CDS | 35.0% | |
| GATTCAGGATATTATGTTGG+AGG | + | chr5_2:48785022-48785041 | Msa0773650:CDS | 35.0% | |
| ! | TGATCCAACTGATGATGAAT+GGG | + | chr5_2:48785225-48785244 | Msa0773650:CDS | 35.0% |
| TTTACCCATTCATCATCAGT+TGG | - | chr5_2:48785232-48785251 | None:intergenic | 35.0% | |
| GTAAAGTCTGCAAATTTGCA+CGG | + | chr5_2:48785247-48785266 | Msa0773650:intron | 35.0% | |
| GGCAGGAAAAGAAAATCTAA+AGG | + | chr5_2:48785268-48785287 | Msa0773650:intron | 35.0% | |
| ATTTCAACAGAAACACCAGA+TGG | + | chr5_2:48785351-48785370 | Msa0773650:intron | 35.0% | |
| ! | TCTGATGCAGTTTTTACAGA+TGG | - | chr5_2:48785378-48785397 | None:intergenic | 35.0% |
| ! | TTTCGATGTTTTGCAAGAAG+AGG | - | chr5_2:48785424-48785443 | None:intergenic | 35.0% |
| ACATAATTCGCAGTTCATTC+CGG | + | chr5_2:48785719-48785738 | Msa0773650:intron | 35.0% | |
| AGAAGAATTCGGTACGTATA+GGG | + | chr5_2:48785779-48785798 | Msa0773650:CDS | 35.0% | |
| AGAAGAACATGAACAAAGAG+TGG | - | chr5_2:48785921-48785940 | None:intergenic | 35.0% | |
| AAATGAATCACCATGAGTTG+AGG | - | chr5_2:48785952-48785971 | None:intergenic | 35.0% | |
| ! | CGCTGATTGGTTGAAAAAAA+AGG | - | chr5_2:48785997-48786016 | None:intergenic | 35.0% |
| TGAAGATGTTTGACACATGT+TGG | + | chr5_2:48786277-48786296 | Msa0773650:intron | 35.0% | |
| GCTAAATCAAATGCCATGAA+GGG | + | chr5_2:48786482-48786501 | Msa0773650:CDS | 35.0% | |
| GTTATTCTTCTCTTTCTTGG+GGG | - | chr5_2:48786594-48786613 | None:intergenic | 35.0% | |
| !! | TAATTAATCTCTGGCTTTGG+GGG | - | chr5_2:48786689-48786708 | None:intergenic | 35.0% |
| ! | AATCCCTTTGAAAATACCAC+GGG | + | chr5_2:48786721-48786740 | Msa0773650:CDS | 35.0% |
| GCAAGATGAGTCAATCAAAA+AGG | + | chr5_2:48786805-48786824 | Msa0773650:CDS | 35.0% | |
| ACAATTGTAGCATCAACTTC+GGG | - | chr5_2:48786833-48786852 | None:intergenic | 35.0% | |
| ! | TCAACGCCAAATTTTACGAG+AGG | + | chr5_2:48784281-48784300 | Msa0773650:CDS | 40.0% |
| AGGCTTCCTCTCGTAAAATT+TGG | - | chr5_2:48784290-48784309 | None:intergenic | 40.0% | |
| TATCTGCAGAGATAAGGACA+TGG | + | chr5_2:48784691-48784710 | Msa0773650:CDS | 40.0% | |
| TTGAACAGTTGAAAAGGCAG+AGG | + | chr5_2:48784759-48784778 | Msa0773650:CDS | 40.0% | |
| TGAACAGTTGAAAAGGCAGA+GGG | + | chr5_2:48784760-48784779 | Msa0773650:CDS | 40.0% | |
| CATGGACAGTGAGACATTAA+CGG | - | chr5_2:48784956-48784975 | None:intergenic | 40.0% | |
| GCTGAATCAGATGAGTATAG+TGG | + | chr5_2:48785202-48785221 | Msa0773650:CDS | 40.0% | |
| ! | GTGATCCAACTGATGATGAA+TGG | + | chr5_2:48785224-48785243 | Msa0773650:CDS | 40.0% |
| ! | GTTTTTACAGATGGTCCATC+TGG | - | chr5_2:48785369-48785388 | None:intergenic | 40.0% |
| ! | TGTTTGCACACTTTGTTTCC+CGG | - | chr5_2:48785494-48785513 | None:intergenic | 40.0% |
| ACAAAGTGTGCAAACAGAGA+AGG | + | chr5_2:48785498-48785517 | Msa0773650:CDS | 40.0% | |
| CTGAAGCTAACACTGATCAT+GGG | + | chr5_2:48785619-48785638 | Msa0773650:CDS | 40.0% | |
| ! | ATGTCAGAGAGAGCTTTTCT+TGG | - | chr5_2:48785645-48785664 | None:intergenic | 40.0% |
| AGAAAAGCTCTCTCTGACAT+TGG | + | chr5_2:48785645-48785664 | Msa0773650:CDS | 40.0% | |
| CTCTGACATTGGAAATACAC+TGG | + | chr5_2:48785656-48785675 | Msa0773650:CDS | 40.0% | |
| GAGAAGAATTCGGTACGTAT+AGG | + | chr5_2:48785778-48785797 | Msa0773650:CDS | 40.0% | |
| GAAGAATTCGGTACGTATAG+GGG | + | chr5_2:48785780-48785799 | Msa0773650:CDS | 40.0% | |
| ATCAAGGGAGAATTGCGAAT+TGG | - | chr5_2:48786099-48786118 | None:intergenic | 40.0% | |
| GATGTTTGACACATGTTGGT+TGG | + | chr5_2:48786281-48786300 | Msa0773650:intron | 40.0% | |
| GTTGGTATCTCTCACTGATA+TGG | + | chr5_2:48786299-48786318 | Msa0773650:intron | 40.0% | |
| !! | AAGCATTATCGGTTTCTACG+TGG | + | chr5_2:48786368-48786387 | Msa0773650:intron | 40.0% |
| ! | TCATGGCATTTGATTTAGCC+TGG | - | chr5_2:48786481-48786500 | None:intergenic | 40.0% |
| GGCTAAATCAAATGCCATGA+AGG | + | chr5_2:48786481-48786500 | Msa0773650:intron | 40.0% | |
| AGGGTAACCAGAGAAAGAAA+TGG | + | chr5_2:48786501-48786520 | Msa0773650:CDS | 40.0% | |
| GTAACCAGAGAAAGAAATGG+CGG | + | chr5_2:48786504-48786523 | Msa0773650:CDS | 40.0% | |
| ATTTCCGCCATTTCTTTCTC+TGG | - | chr5_2:48786511-48786530 | None:intergenic | 40.0% | |
| TCAGAATCCATGCGAGATTC+AGG | + | chr5_2:48785007-48785026 | Msa0773650:CDS | 45.0% | |
| TCCTTATGACTTACGCAAGC+TGG | + | chr5_2:48785048-48785067 | Msa0773650:CDS | 45.0% | |
| ACCAGCTTGCGTAAGTCATA+AGG | - | chr5_2:48785052-48785071 | None:intergenic | 45.0% | |
| TATGACTTACGCAAGCTGGT+AGG | + | chr5_2:48785052-48785071 | Msa0773650:CDS | 45.0% | |
| AGGCGACGAACATTCAAACT+TGG | + | chr5_2:48785288-48785307 | Msa0773650:intron | 45.0% | |
| AAATGCGCTTGCAGAGCTAT+GGG | + | chr5_2:48785441-48785460 | Msa0773650:CDS | 45.0% | |
| AGAGCTATGGGAATTGGTTG+TGG | + | chr5_2:48785453-48785472 | Msa0773650:CDS | 45.0% | |
| ATTGGTTGTGGAAGCTCATG+CGG | + | chr5_2:48785465-48785484 | Msa0773650:CDS | 45.0% | |
| AAGTGTGCAAACAGAGAAGG+AGG | + | chr5_2:48785501-48785520 | Msa0773650:CDS | 45.0% | |
| AGTGTGCAAACAGAGAAGGA+GGG | + | chr5_2:48785502-48785521 | Msa0773650:CDS | 45.0% | |
| TTTATCTGCTTCGTCGCTAC+CGG | - | chr5_2:48785541-48785560 | None:intergenic | 45.0% | |
| ! | TTGCTTCAGGGTGCATTGAT+TGG | + | chr5_2:48785591-48785610 | Msa0773650:CDS | 45.0% |
| !! | TGCTTCAGGGTGCATTGATT+GGG | + | chr5_2:48785592-48785611 | Msa0773650:CDS | 45.0% |
| ! | TGATCAGTGTTAGCTTCAGC+AGG | - | chr5_2:48785618-48785637 | None:intergenic | 45.0% |
| GCTGAAGCTAACACTGATCA+TGG | + | chr5_2:48785618-48785637 | Msa0773650:CDS | 45.0% | |
| TACGCGACAGGAGAAGAATT+CGG | + | chr5_2:48785768-48785787 | Msa0773650:CDS | 45.0% | |
| ! | CGTATAGGGGTATACAGCTT+CGG | + | chr5_2:48785793-48785812 | Msa0773650:CDS | 45.0% |
| AGAGTGGAGAGTGAGAAACT+TGG | - | chr5_2:48785905-48785924 | None:intergenic | 45.0% | |
| AAAGCATGGTTACCGCTGAT+TGG | - | chr5_2:48786010-48786029 | None:intergenic | 45.0% | |
| AATCAGCGGTAACCATGCTT+TGG | + | chr5_2:48786009-48786028 | Msa0773650:intron | 45.0% | |
| TAACCATGCTTTGGTACGCT+TGG | + | chr5_2:48786018-48786037 | Msa0773650:CDS | 45.0% | |
| ! | AGTACCGAATTCGGGTACTT+CGG | - | chr5_2:48786070-48786089 | None:intergenic | 45.0% |
| !! | TGGTACGTGAGTACCGAATT+CGG | - | chr5_2:48786079-48786098 | None:intergenic | 45.0% |
| CTTTCTCTGGTTACCCTTCA+TGG | - | chr5_2:48786498-48786517 | None:intergenic | 45.0% | |
| ! | TTAGGAGGTTGCGTTTTCTG+TGG | - | chr5_2:48786647-48786666 | None:intergenic | 45.0% |
| ! | TGGCCCGTGGTATTTTCAAA+GGG | - | chr5_2:48786727-48786746 | None:intergenic | 45.0% |
| ! | ATGGCCCGTGGTATTTTCAA+AGG | - | chr5_2:48786728-48786747 | None:intergenic | 45.0% |
| !! | TGATGACCCTTGCTTTTGCA+TGG | - | chr5_2:48786747-48786766 | None:intergenic | 45.0% |
| CATTCTTGTCTCCCAATGGA+AGG | - | chr5_2:48786778-48786797 | None:intergenic | 45.0% | |
| CTAGCATTCTTGTCTCCCAA+TGG | - | chr5_2:48786782-48786801 | None:intergenic | 45.0% | |
| !!! | TTTATTTAGAATATTAAAAA+GGG | - | chr5_2:48784851-48784870 | None:intergenic | 5.0% |
| !!! | ATTTATTTAGAATATTAAAA+AGG | - | chr5_2:48784852-48784871 | None:intergenic | 5.0% |
| CAGTTGAAAAGGCAGAGGGA+TGG | + | chr5_2:48784764-48784783 | Msa0773650:CDS | 50.0% | |
| AGTCTGCAAATTTGCACGGC+AGG | + | chr5_2:48785251-48785270 | Msa0773650:intron | 50.0% | |
| GAAATGCGCTTGCAGAGCTA+TGG | + | chr5_2:48785440-48785459 | Msa0773650:CDS | 50.0% | |
| GCTTGCAGAGCTATGGGAAT+TGG | + | chr5_2:48785447-48785466 | Msa0773650:CDS | 50.0% | |
| GGAGGGACTGTAAATGATCC+CGG | + | chr5_2:48785519-48785538 | Msa0773650:CDS | 50.0% | |
| TTATCTGCTTCGTCGCTACC+GGG | - | chr5_2:48785540-48785559 | None:intergenic | 50.0% | |
| AACCGCCTTCTAGCAACTCA+AGG | + | chr5_2:48785561-48785580 | Msa0773650:CDS | 50.0% | |
| ! | CACCTTGAGTTGCTAGAAGG+CGG | - | chr5_2:48785566-48785585 | None:intergenic | 50.0% |
| ! | CAGCACCTTGAGTTGCTAGA+AGG | - | chr5_2:48785569-48785588 | None:intergenic | 50.0% |
| !! | TCAAGGTGCTGAGTTGCTTC+AGG | + | chr5_2:48785578-48785597 | Msa0773650:CDS | 50.0% |
| !! | CAAGGTGCTGAGTTGCTTCA+GGG | + | chr5_2:48785579-48785598 | Msa0773650:CDS | 50.0% |
| TTCATTCCGGTACGCGGTAT+GGG | + | chr5_2:48785732-48785751 | Msa0773650:CDS | 50.0% | |
| TATACAGCTTCGGTACGCTC+CGG | + | chr5_2:48785803-48785822 | Msa0773650:intron | 50.0% | |
| CTCACTCAGTCCTCAACTCA+TGG | + | chr5_2:48785939-48785958 | Msa0773650:intron | 50.0% | |
| GAACCAAGCGTACCAAAGCA+TGG | - | chr5_2:48786024-48786043 | None:intergenic | 50.0% | |
| ATTCGGGTACTTCGGCGTAT+TGG | - | chr5_2:48786062-48786081 | None:intergenic | 50.0% | |
| ! | TACGCCGAAGTACCCGAATT+CGG | + | chr5_2:48786063-48786082 | Msa0773650:CDS | 50.0% |
| !! | GGTACGTGAGTACCGAATTC+GGG | - | chr5_2:48786078-48786097 | None:intergenic | 50.0% |
| TTACCTGGCTGCGATGAAGA+TGG | - | chr5_2:48786563-48786582 | None:intergenic | 50.0% | |
| !! | TTGGGGGCATCTGAATTACC+TGG | - | chr5_2:48786578-48786597 | None:intergenic | 50.0% |
| TCGCAGTTCATTCCGGTACG+CGG | + | chr5_2:48785726-48785745 | Msa0773650:intron | 55.0% | |
| GTTCATTCCGGTACGCGGTA+TGG | + | chr5_2:48785731-48785750 | Msa0773650:intron | 55.0% | |
| ! | CTTTGGTACGCTTGGTTCGC+TGG | + | chr5_2:48786026-48786045 | Msa0773650:CDS | 55.0% |
| CACGGGCCATGCAAAAGCAA+GGG | + | chr5_2:48786738-48786757 | Msa0773650:CDS | 55.0% | |
| GTGGAAGCTCATGCGGTTGC+CGG | + | chr5_2:48785472-48785491 | Msa0773650:CDS | 60.0% | |
| TGGAAGCTCATGCGGTTGCC+GGG | + | chr5_2:48785473-48785492 | Msa0773650:CDS | 60.0% | |
| TCCGGTACGCGGTATGGGTA+CGG | + | chr5_2:48785737-48785756 | Msa0773650:CDS | 60.0% | |
| CCTGGCTGCGATGAAGATGG+CGG | - | chr5_2:48786560-48786579 | None:intergenic | 60.0% | |
| !! | CCTTGCTTTTGCATGGCCCG+TGG | - | chr5_2:48786740-48786759 | None:intergenic | 60.0% |
| CCACGGGCCATGCAAAAGCA+AGG | + | chr5_2:48786737-48786756 | Msa0773650:CDS | 60.0% | |
| CCCGTACCCATACCGCGTAC+CGG | - | chr5_2:48785741-48785760 | None:intergenic | 65.0% | |
| CCGGTACGCGGTATGGGTAC+GGG | + | chr5_2:48785738-48785757 | Msa0773650:CDS | 65.0% | |
| GCGGTATGGGTACGGGTTCG+CGG | + | chr5_2:48785745-48785764 | Msa0773650:CDS | 65.0% | |
| ! | GGCTGCGATGAAGATGGCGG+CGG | - | chr5_2:48786557-48786576 | None:intergenic | 65.0% |
| CCGCCATCTTCATCGCAGCC+AGG | + | chr5_2:48786557-48786576 | Msa0773650:CDS | 65.0% | |
| ACGGGTTCGCGGTACGCGAC+AGG | + | chr5_2:48785756-48785775 | Msa0773650:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 48784260 | 48786868 | 48784260 | ID=Msa0773650;Name=Msa0773650 |
| chr5_2 | mRNA | 48784260 | 48786868 | 48784260 | ID=Msa0773650-mRNA-1;Parent=Msa0773650;Name=Msa0773650-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.14|0|0.62|1|1|8|0|392 |
| chr5_2 | exon | 48784260 | 48784324 | 48784260 | ID=Msa0773650-mRNA-1:exon:14627;Parent=Msa0773650-mRNA-1 |
| chr5_2 | exon | 48784667 | 48784811 | 48784667 | ID=Msa0773650-mRNA-1:exon:14628;Parent=Msa0773650-mRNA-1 |
| chr5_2 | exon | 48785004 | 48785073 | 48785004 | ID=Msa0773650-mRNA-1:exon:14629;Parent=Msa0773650-mRNA-1 |
| chr5_2 | exon | 48785155 | 48785251 | 48785155 | ID=Msa0773650-mRNA-1:exon:14630;Parent=Msa0773650-mRNA-1 |
| chr5_2 | exon | 48785416 | 48785677 | 48785416 | ID=Msa0773650-mRNA-1:exon:14631;Parent=Msa0773650-mRNA-1 |
| chr5_2 | exon | 48785732 | 48785814 | 48785732 | ID=Msa0773650-mRNA-1:exon:14632;Parent=Msa0773650-mRNA-1 |
| chr5_2 | exon | 48786015 | 48786084 | 48786015 | ID=Msa0773650-mRNA-1:exon:14633;Parent=Msa0773650-mRNA-1 |
| chr5_2 | exon | 48786482 | 48786868 | 48786482 | ID=Msa0773650-mRNA-1:exon:14634;Parent=Msa0773650-mRNA-1 |
| chr5_2 | CDS | 48784260 | 48784324 | 48784260 | ID=Msa0773650-mRNA-1:cds;Parent=Msa0773650-mRNA-1 |
| chr5_2 | CDS | 48784667 | 48784811 | 48784667 | ID=Msa0773650-mRNA-1:cds;Parent=Msa0773650-mRNA-1 |
| chr5_2 | CDS | 48785004 | 48785073 | 48785004 | ID=Msa0773650-mRNA-1:cds;Parent=Msa0773650-mRNA-1 |
| chr5_2 | CDS | 48785155 | 48785251 | 48785155 | ID=Msa0773650-mRNA-1:cds;Parent=Msa0773650-mRNA-1 |
| chr5_2 | CDS | 48785416 | 48785677 | 48785416 | ID=Msa0773650-mRNA-1:cds;Parent=Msa0773650-mRNA-1 |
| chr5_2 | CDS | 48785732 | 48785814 | 48785732 | ID=Msa0773650-mRNA-1:cds;Parent=Msa0773650-mRNA-1 |
| chr5_2 | CDS | 48786015 | 48786084 | 48786015 | ID=Msa0773650-mRNA-1:cds;Parent=Msa0773650-mRNA-1 |
| chr5_2 | CDS | 48786482 | 48786868 | 48786482 | ID=Msa0773650-mRNA-1:cds;Parent=Msa0773650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
