AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0747740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0747740 MtrunA17_Chr1g0151731 89.107 560 26 3 1 559 1 526 0.0 1013
Msa0747740 MtrunA17_Chr6g0488071 29.372 446 256 10 1 438 1 395 5.47e-43 160
Msa0747740 MtrunA17_Chr6g0488141 28.634 454 249 12 1 447 1 386 2.00e-40 152
Msa0747740 MtrunA17_Chr6g0488291 31.835 267 162 7 1 257 1 257 3.40e-21 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0747740 AT5G11780.1 32.353 544 281 19 13 548 16 480 2.73e-68 229

Find 152 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTTCCTGACTGCTTTAT+TGG 0.164340 5_2:+571344 Msa0747740:CDS
TGTGACGGTGGTGGTGAATC+TGG 0.185538 5_2:+570119 Msa0747740:CDS
TCCATGTATAGAACTTAAAA+AGG 0.209498 5_2:-573199 None:intergenic
TCCATGTATAGAAGTTAAAA+AGG 0.215610 5_2:-573265 None:intergenic
GAACACGGATTGGCAATATT+TGG 0.248245 5_2:+573096 Msa0747740:CDS
AACTTCACTGGTTGCGGTTA+AGG 0.257652 5_2:+569830 Msa0747740:CDS
TTTCTCAGTTCCAAACAAAA+TGG 0.266281 5_2:+569584 Msa0747740:exon
CTCAAGTAACCTCTCTATAA+AGG 0.292180 5_2:-571627 None:intergenic
TTCCCATTCAATTGATCAAC+TGG 0.297157 5_2:+572707 Msa0747740:CDS
GGGTTGTGAGGTTGGTTATT+TGG 0.299959 5_2:+570211 Msa0747740:CDS
AATTGATAGCGAAATCTTTC+AGG 0.305089 5_2:-572493 None:intergenic
TGATGCTAGAGTTGGGGTTT+TGG 0.312253 5_2:+570055 Msa0747740:CDS
TGAGGTGAAATCGGTGAAAT+TGG 0.317673 5_2:-569703 None:intergenic
GGTAGCACCGTTGCGGTATT+CGG 0.322536 5_2:-569682 None:intergenic
TGTGAGGTTGGTTATTTGGC+TGG 0.324431 5_2:+570215 Msa0747740:CDS
TTCAGGTTATGACGGGGTTT+CGG 0.342353 5_2:+570336 Msa0747740:CDS
GTTGCATGCTGCAGCAGTTC+AGG 0.345498 5_2:+570319 Msa0747740:CDS
AAGAGTGAAGTTGAGGTTAA+TGG 0.346324 5_2:+570029 Msa0747740:CDS
GTTTGAGATTTATCGTTTGA+TGG 0.347535 5_2:+569929 Msa0747740:CDS
GCAATATTTGGTTGTGGAAC+TGG 0.348987 5_2:+573108 Msa0747740:CDS
ACTTCACTGGTTGCGGTTAA+GGG 0.353217 5_2:+569831 Msa0747740:CDS
GTGAGGTTGGTTATTTGGCT+GGG 0.359801 5_2:+570216 Msa0747740:CDS
CCCTTGAATTTCATACTAAT+AGG 0.362321 5_2:+569790 Msa0747740:CDS
GGTTCGGAAGGGGATTGAAA+TGG 0.367232 5_2:+570190 Msa0747740:CDS
TTTGCCAGTGATCTCCTTGC+TGG 0.370811 5_2:+571408 Msa0747740:CDS
TCAAGTAACCTCTCTATAAA+GGG 0.371840 5_2:-571626 None:intergenic
GTTCGGAAGGGGATTGAAAT+GGG 0.378899 5_2:+570191 Msa0747740:CDS
TGAAAGATTTCGCTATCAAT+TGG 0.402702 5_2:+572495 Msa0747740:CDS
ATTGAAATGGGTTGTGAGGT+TGG 0.406186 5_2:+570203 Msa0747740:CDS
ACCTATTAGTATGAAATTCA+AGG 0.406338 5_2:-569791 None:intergenic
TGAGTGATGGGGTTCGGAAG+GGG 0.411569 5_2:+570180 Msa0747740:CDS
GTGACGGTGGTGGTGAATCT+GGG 0.413825 5_2:+570120 Msa0747740:CDS
AAGGAGATCACTGGCAAAGC+TGG 0.420916 5_2:-571403 None:intergenic
TTCTAGAACTTCACTGGTTG+CGG 0.421114 5_2:+569824 Msa0747740:CDS
TACAGGGAAAAGGGTGATCA+TGG 0.421383 5_2:+572643 Msa0747740:intron
AATGGTGGTGATGCTAGAGT+TGG 0.423330 5_2:+570047 Msa0747740:CDS
TAGAACCACAGAAGTGGAAT+TGG 0.423743 5_2:-569762 None:intergenic
ATGGTGGTGATGCTAGAGTT+GGG 0.425809 5_2:+570048 Msa0747740:CDS
ATTTATCGTTTGATGGGTTG+TGG 0.428044 5_2:+569936 Msa0747740:CDS
GGGGATCGCGAGAGGGGAGA+AGG 0.432937 5_2:+570289 Msa0747740:CDS
AGGAACTGTGCCTATGCTTC+CGG 0.434210 5_2:+573230 Msa0747740:CDS
AAATTGAGGGTTTGGTGGAA+GGG 0.439420 5_2:+569976 Msa0747740:CDS
GAGAAATTGTTGAAGGAAGT+TGG 0.441841 5_2:-569567 None:intergenic
GTTGGTGGTGATTGTTTGAA+AGG 0.443415 5_2:+570143 Msa0747740:CDS
CGAACCCCATCACTCACAAA+AGG 0.448596 5_2:-570173 None:intergenic
TCTGCTTGGTTACAGGGAAA+AGG 0.448658 5_2:+572633 Msa0747740:intron
AATTGAGGGTTTGGTGGAAG+GGG 0.450119 5_2:+569977 Msa0747740:CDS
GTGAGTGATGGGGTTCGGAA+GGG 0.455588 5_2:+570179 Msa0747740:CDS
CTGCTTGGTTACAGGGAAAA+GGG 0.455759 5_2:+572634 Msa0747740:intron
AACCCAGTTGATCAATTGAA+TGG 0.459406 5_2:-572710 None:intergenic
TTGGTGGTGATTGTTTGAAA+GGG 0.460482 5_2:+570144 Msa0747740:CDS
GAAGAGTGAAATTGAGGGTT+TGG 0.461305 5_2:+569968 Msa0747740:CDS
TCATTCATTAATTGTCAAGC+TGG 0.461966 5_2:+572449 Msa0747740:CDS
GAAATTGAGGGTTTGGTGGA+AGG 0.462960 5_2:+569975 Msa0747740:CDS
AAGAACTGTGCCTATGCTTC+CGG 0.464773 5_2:+573164 Msa0747740:CDS
TGTGAGTGATGGGGTTCGGA+AGG 0.467210 5_2:+570178 Msa0747740:CDS
GCAGCAGTTCAGGTTATGAC+GGG 0.467718 5_2:+570329 Msa0747740:CDS
TGAGGTTGGTTATTTGGCTG+GGG 0.467778 5_2:+570217 Msa0747740:CDS
AACTCACTTATAAGATCAAT+AGG 0.470267 5_2:-572784 None:intergenic
AGAAGTGAAGAGTGAAATTG+AGG 0.470560 5_2:+569962 Msa0747740:CDS
CTGCTTGTTTCGTGTTGCGA+TGG 0.470961 5_2:+569864 Msa0747740:CDS
GGAGAAGATTGAGGTGAAAT+CGG 0.471563 5_2:-569712 None:intergenic
TGCGGTATTCGGTTAGGAAA+CGG 0.474041 5_2:-569671 None:intergenic
AGCATTGGTTGGTAGTAAAG+TGG 0.474818 5_2:-569633 None:intergenic
TTTATCGTTTGATGGGTTGT+GGG 0.480718 5_2:+569937 Msa0747740:CDS
ACAACCACTCCCTAAAACCT+AGG 0.490065 5_2:+569530 Msa0747740:five_prime_UTR
AGCTGCTGAGGAACACGGAT+TGG 0.491886 5_2:+573086 Msa0747740:CDS
TTTGAGATTTATCGTTTGAT+GGG 0.493525 5_2:+569930 Msa0747740:CDS
CACCGTTGCGGTATTCGGTT+AGG 0.495050 5_2:-569677 None:intergenic
GTACTATTCTGTGATGATGA+TGG 0.496979 5_2:+572421 Msa0747740:CDS
TCATCATCACAGAATAGTAC+AGG 0.498391 5_2:-572418 None:intergenic
CAGTGGCATCATAATATGAT+TGG 0.500929 5_2:-571602 None:intergenic
ACCCAGTTGATCAATTGAAT+GGG 0.505767 5_2:-572709 None:intergenic
TTGATTGATTCTTTGAGCAT+TGG 0.507350 5_2:-569648 None:intergenic
GTGGACGCCGTAAGTTTGTC+TGG 0.507922 5_2:+573339 Msa0747740:CDS
AGAAGCTTCTAGAACTTCAC+TGG 0.511669 5_2:+569818 Msa0747740:CDS
CTTATGTAAATTCCTTCTGT+AGG 0.514311 5_2:+572677 Msa0747740:CDS
TGGATGGTTGATTGTGACGG+TGG 0.519274 5_2:+570107 Msa0747740:CDS
GCATTGGTTGGTAGTAAAGT+GGG 0.519982 5_2:-569632 None:intergenic
GCAACTAGAAAACGCAAAGA+AGG 0.525322 5_2:+573393 Msa0747740:CDS
GAAGTGAAGAGTGAAATTGA+GGG 0.532302 5_2:+569963 Msa0747740:CDS
GAGTGAAATTGAGGGTTTGG+TGG 0.538067 5_2:+569971 Msa0747740:CDS
TGGTGGTGATGCTAGAGTTG+GGG 0.538164 5_2:+570049 Msa0747740:CDS
GGATTGGCAATATTTGGTTG+TGG 0.538609 5_2:+573102 Msa0747740:CDS
TCACAATCAACCATCCAAAC+CGG 0.540267 5_2:-570101 None:intergenic
ATGGTTGATTGTGACGGTGG+TGG 0.541207 5_2:+570110 Msa0747740:CDS
TAAGCACCAATAAAGCAGTC+AGG 0.543520 5_2:-571350 None:intergenic
AGCGAAATCTTTCAGGCTGT+CGG 0.543878 5_2:-572486 None:intergenic
TGAGGCGGGGATCGCGAGAG+GGG 0.544183 5_2:+570283 Msa0747740:CDS
TTGTATGAAGAGTGAAGTTG+AGG 0.545439 5_2:+570022 Msa0747740:CDS
GATCAATTGAATGGGAATGC+AGG 0.547063 5_2:-572701 None:intergenic
TTGTTGATTTGATACCGGTT+TGG 0.550293 5_2:+570087 Msa0747740:CDS
GAACCCCATCACTCACAAAA+GGG 0.551030 5_2:-570172 None:intergenic
CCTATTAGTATGAAATTCAA+GGG 0.552310 5_2:-569790 None:intergenic
ACCTCTCTATAAAGGGGCAG+TGG 0.553165 5_2:-571619 None:intergenic
GGTGGTGGTGAATCTGGGGT+TGG 0.555180 5_2:+570125 Msa0747740:CDS
TTTGAGGCGGGGATCGCGAG+AGG 0.561298 5_2:+570281 Msa0747740:CDS
AACCACAGAAGTGGAATTGG+TGG 0.561727 5_2:-569759 None:intergenic
GGTGGTGAATCTGGGGTTGG+TGG 0.563041 5_2:+570128 Msa0747740:CDS
ATCATCACCAGACAAACTTA+CGG 0.564664 5_2:-573346 None:intergenic
TGCAGCAGTTCAGGTTATGA+CGG 0.565355 5_2:+570328 Msa0747740:CDS
TGGAACTGAGAAATTGTTGA+AGG 0.565877 5_2:-569574 None:intergenic
TGATTTGATACCGGTTTGGA+TGG 0.570864 5_2:+570091 Msa0747740:CDS
CAACCACTCCCTAAAACCTA+GGG 0.570898 5_2:+569531 Msa0747740:five_prime_UTR
AGAGATGATGAGTAAGTACA+TGG 0.571721 5_2:-569501 None:intergenic
TGTTCAACCACCGGAAGCAT+AGG 0.572107 5_2:-573240 None:intergenic
ACCCACCAATTCCACTTCTG+TGG 0.572448 5_2:+569757 Msa0747740:CDS
TTGATTCTTTGAGCATTGGT+TGG 0.573059 5_2:-569644 None:intergenic
CTTCTAGCTGCTGAGGAACA+CGG 0.574329 5_2:+573081 Msa0747740:CDS
AAAACGCAAAGAAGGAATTG+AGG 0.576892 5_2:+573401 Msa0747740:CDS
ATGGATGTGTCGCGATGAAG+AGG 0.578592 5_2:+569883 Msa0747740:CDS
AGCGGCATAGACAGAAAGAT+CGG 0.579831 5_2:+572742 Msa0747740:CDS
GCCACTGCCCCTTTATAGAG+AGG 0.580203 5_2:+571618 Msa0747740:CDS
TGTTTGACCACCGGAAGCAT+AGG 0.585831 5_2:-573174 None:intergenic
TGAAGTGGTGTGAATTGCGC+GGG 0.586090 5_2:-569733 None:intergenic
TCCCATTCAATTGATCAACT+GGG 0.586710 5_2:+572708 Msa0747740:CDS
GGGGATTGAAATGGGTTGTG+AGG 0.589661 5_2:+570199 Msa0747740:CDS
ACAGGGAAAAGGGTGATCAT+GGG 0.591860 5_2:+572644 Msa0747740:intron
GTTTGGATGGTTGATTGTGA+CGG 0.592189 5_2:+570104 Msa0747740:CDS
TCACTGTTGCTTGAATGTAC+AGG 0.592735 5_2:-573490 None:intergenic
CATTGGTTGGTAGTAAAGTG+GGG 0.592808 5_2:-569631 None:intergenic
GCTGAATAGAACCACAGAAG+TGG 0.594045 5_2:-569768 None:intergenic
TTGAGGCGGGGATCGCGAGA+GGG 0.594625 5_2:+570282 Msa0747740:CDS
AGTCAGCTATACAGTCTGCT+AGG 0.596408 5_2:+572531 Msa0747740:CDS
TGGAATTGGTGGGTCTGAAG+TGG 0.597501 5_2:-569748 None:intergenic
TTATCGTTTGATGGGTTGTG+GGG 0.599982 5_2:+569938 Msa0747740:CDS
TGAAATTGGTAGCACCGTTG+CGG 0.601583 5_2:-569689 None:intergenic
AACTGGCAAGCATCGTGCAA+AGG 0.604651 5_2:+573125 Msa0747740:CDS
ATTGGTTGGTAGTAAAGTGG+GGG 0.609441 5_2:-569630 None:intergenic
AGAATGGCTTCTAGCTGCTG+AGG 0.613476 5_2:+573074 Msa0747740:intron
CTGAAGTGGTGTGAATTGCG+CGG 0.614652 5_2:-569734 None:intergenic
TCAATAGGAGTGGAAACACT+TGG 0.615988 5_2:-572769 None:intergenic
CTTACCAGCAAGGAGATCAC+TGG 0.624906 5_2:-571412 None:intergenic
AACTGTGCCTATGCTTCCGG+TGG 0.625094 5_2:+573167 Msa0747740:CDS
TGACGGTGGTGGTGAATCTG+GGG 0.625322 5_2:+570121 Msa0747740:CDS
GTACATTCAAGCAACAGTGA+TGG 0.626221 5_2:+573493 Msa0747740:CDS
AACTGTGCCTATGCTTCCGG+TGG 0.628824 5_2:+573233 Msa0747740:CDS
CATCATCACAGAATAGTACA+GGG 0.630428 5_2:-572417 None:intergenic
CAAGTAACCTCTCTATAAAG+GGG 0.638397 5_2:-571625 None:intergenic
ACTTATAAGATCAATAGGAG+TGG 0.641994 5_2:-572779 None:intergenic
GGGAATGCAGGACCTACAGA+AGG 0.642543 5_2:-572689 None:intergenic
CAGCAGTTCAGGTTATGACG+GGG 0.647188 5_2:+570330 Msa0747740:CDS
AATTGCGCGGGAGAAGATTG+AGG 0.647307 5_2:-569721 None:intergenic
ACCACAGAAGTGGAATTGGT+GGG 0.661008 5_2:-569758 None:intergenic
TATGATGGTACTTACCAGCA+AGG 0.661766 5_2:-571422 None:intergenic
TTCCTAACCGAATACCGCAA+CGG 0.665195 5_2:+569675 Msa0747740:CDS
AACTGGGTTACTCGTCAAAG+CGG 0.670412 5_2:+572724 Msa0747740:CDS
CGATAAATCTCAAACACCAA+CGG 0.671461 5_2:-569921 None:intergenic
TTGGTTGGTAGTAAAGTGGG+GGG 0.687195 5_2:-569629 None:intergenic
AGTGAAGTTGAGGTTAATGG+TGG 0.690712 5_2:+570032 Msa0747740:CDS
TGTGTCGCGATGAAGAGGAT+CGG 0.711856 5_2:+569888 Msa0747740:CDS
TGTAGAGATGCATGATACTG+TGG 0.718185 5_2:+573320 Msa0747740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATACAAGTTATACAAATAA+AGG - chr5_2:571258-571277 None:intergenic 15.0%
!!! TATAATCTTTTCTGTAAAAT+AGG - chr5_2:571897-571916 None:intergenic 15.0%
!!! TATTTTACAGAAAAGATTAT+AGG + chr5_2:571896-571915 Msa0747740:intron 15.0%
!! AAAATAAACTTATATGAGTA+GGG - chr5_2:571942-571961 None:intergenic 15.0%
!! AAAAATAAACTTATATGAGT+AGG - chr5_2:571943-571962 None:intergenic 15.0%
!! GAAAGAATAATAAAAGAAAA+TGG - chr5_2:572825-572844 None:intergenic 15.0%
!!! TTTCGGAATTTTTACTTTTT+GGG + chr5_2:570353-570372 Msa0747740:CDS 20.0%
!! TAGTTTATATGTAAGTTGTT+TGG - chr5_2:570909-570928 None:intergenic 20.0%
!! TATAAAAAACAGAACAAAAC+AGG - chr5_2:571764-571783 None:intergenic 20.0%
!! ATAATGTTTGATAAATGAAC+TGG - chr5_2:571821-571840 None:intergenic 20.0%
!!! TATTTTTCATGCGATAATTT+AGG + chr5_2:571956-571975 Msa0747740:intron 20.0%
!!! AATTGAAATTTTTGTGATGT+TGG + chr5_2:572038-572057 Msa0747740:intron 20.0%
!!! GAAAACTATGATTTAGATTT+TGG + chr5_2:572060-572079 Msa0747740:intron 20.0%
!! AATAATAAAAGAAAATGGAG+GGG - chr5_2:572820-572839 None:intergenic 20.0%
!! GAATAATAAAAGAAAATGGA+GGG - chr5_2:572821-572840 None:intergenic 20.0%
!! AGAATAATAAAAGAAAATGG+AGG - chr5_2:572822-572841 None:intergenic 20.0%
!!! TTTTTAAAAAAAGTTCAGCA+AGG + chr5_2:572877-572896 Msa0747740:intron 20.0%
! CCTATTAGTATGAAATTCAA+GGG - chr5_2:569793-569812 None:intergenic 25.0%
! ACCTATTAGTATGAAATTCA+AGG - chr5_2:569794-569813 None:intergenic 25.0%
!! TTTGAGATTTATCGTTTGAT+GGG + chr5_2:569930-569949 Msa0747740:CDS 25.0%
!!! GAAAATGTGTTTGATTTTTG+AGG + chr5_2:570265-570284 Msa0747740:CDS 25.0%
!!! GTTTCGGAATTTTTACTTTT+TGG + chr5_2:570352-570371 Msa0747740:CDS 25.0%
!! ACTACAATTTAAAATCATGC+TGG - chr5_2:570407-570426 None:intergenic 25.0%
!!! AGGTTTTATAAAATGGATTG+CGG - chr5_2:570552-570571 None:intergenic 25.0%
!!! GTCATCAAGGTTTTATAAAA+TGG - chr5_2:570559-570578 None:intergenic 25.0%
! GATAATAAGCACTTATGTAT+AGG - chr5_2:570833-570852 None:intergenic 25.0%
! TCATTGCAACAAAATTGTTA+AGG - chr5_2:570972-570991 None:intergenic 25.0%
!! CATAATTATATTGAGGCATT+TGG - chr5_2:571014-571033 None:intergenic 25.0%
! TGCCTCAATATAATTATGTT+CGG + chr5_2:571016-571035 Msa0747740:intron 25.0%
! AATTAAATTTCACCAAGATC+TGG - chr5_2:571092-571111 None:intergenic 25.0%
!!! TTGTGTTTTAATACTCAAGT+TGG + chr5_2:571130-571149 Msa0747740:intron 25.0%
! AGCATTACTTAGTTGTAATT+CGG + chr5_2:571451-571470 Msa0747740:intron 25.0%
! TTAGTTGTAATTCGGAATTA+AGG + chr5_2:571459-571478 Msa0747740:intron 25.0%
! TAGTTGTAATTCGGAATTAA+GGG + chr5_2:571460-571479 Msa0747740:intron 25.0%
! TAATCTTACACATAGTTTCA+TGG - chr5_2:571520-571539 None:intergenic 25.0%
! AAACATTATCTTAGATTAGC+TGG + chr5_2:571832-571851 Msa0747740:intron 25.0%
!! TCTTTTCTGTAAAATAGGTT+TGG - chr5_2:571892-571911 None:intergenic 25.0%
! TTGATTCTGTTTATTGATGT+TGG + chr5_2:571999-572018 Msa0747740:intron 25.0%
!! CTTTTCAAAGACAATATACT+GGG - chr5_2:572152-572171 None:intergenic 25.0%
!! CAGTATATTGTCTTTGAAAA+GGG + chr5_2:572151-572170 Msa0747740:intron 25.0%
! TGTCATATTCAACAATTTAC+TGG + chr5_2:572349-572368 Msa0747740:intron 25.0%
! AACTCACTTATAAGATCAAT+AGG - chr5_2:572787-572806 None:intergenic 25.0%
! CACTGATATAACTTGAAATT+GGG - chr5_2:572925-572944 None:intergenic 25.0%
! ACACTGATATAACTTGAAAT+TGG - chr5_2:572926-572945 None:intergenic 25.0%
! TAGTGATTTCTTATTCAGAA+TGG + chr5_2:573058-573077 Msa0747740:intron 25.0%
! CCATGTATAGAACTTAAAAA+GGG - chr5_2:573201-573220 None:intergenic 25.0%
! TCCATGTATAGAACTTAAAA+AGG - chr5_2:573202-573221 None:intergenic 25.0%
!!! TTTTTAAGTTCTATACATGG+AGG + chr5_2:573201-573220 Msa0747740:CDS 25.0%
!!! TTTTAAGTTCTATACATGGA+GGG + chr5_2:573202-573221 Msa0747740:CDS 25.0%
! CCATGTATAGAAGTTAAAAA+GGG - chr5_2:573267-573286 None:intergenic 25.0%
! TCCATGTATAGAAGTTAAAA+AGG - chr5_2:573268-573287 None:intergenic 25.0%
!!! TTTTTAACTTCTATACATGG+AGG + chr5_2:573267-573286 Msa0747740:CDS 25.0%
!!! TTTTAACTTCTATACATGGA+GGG + chr5_2:573268-573287 Msa0747740:CDS 25.0%
TTTCTCAGTTCCAAACAAAA+TGG + chr5_2:569584-569603 Msa0747740:exon 30.0%
! TTTTGTGTGTCCATTTTGTT+TGG - chr5_2:569597-569616 None:intergenic 30.0%
! TTGATTGATTCTTTGAGCAT+TGG - chr5_2:569651-569670 None:intergenic 30.0%
CCCTTGAATTTCATACTAAT+AGG + chr5_2:569790-569809 Msa0747740:CDS 30.0%
! GTTTGAGATTTATCGTTTGA+TGG + chr5_2:569929-569948 Msa0747740:CDS 30.0%
!! AATGTGTTTGATTTTTGAGG+CGG + chr5_2:570268-570287 Msa0747740:CDS 30.0%
AGTCTAAATAGTTGTCATCA+AGG - chr5_2:570572-570591 None:intergenic 30.0%
GAAAATTAAGCTGTTAACGT+AGG + chr5_2:570878-570897 Msa0747740:intron 30.0%
AAAGAATGCATGACAACAAA+TGG - chr5_2:570933-570952 None:intergenic 30.0%
GACCGAACATAATTATATTG+AGG - chr5_2:571021-571040 None:intergenic 30.0%
ATTATGTTCGGTCATTATGT+TGG + chr5_2:571028-571047 Msa0747740:intron 30.0%
! TGTAGATTCTACAGCATTTT+AGG + chr5_2:571063-571082 Msa0747740:intron 30.0%
TATATTACTCAGTTTGACGT+AGG + chr5_2:571274-571293 Msa0747740:intron 30.0%
AGTAATGCTAAAGCATATGA+TGG - chr5_2:571440-571459 None:intergenic 30.0%
TCAAGTAACCTCTCTATAAA+GGG - chr5_2:571629-571648 None:intergenic 30.0%
GAACAAAACAGGACTAAATA+AGG - chr5_2:571753-571772 None:intergenic 30.0%
! ATAAGATCCGACAGTATTTT+TGG + chr5_2:571857-571876 Msa0747740:intron 30.0%
TTCATGCGATAATTTAGGTA+AGG + chr5_2:571961-571980 Msa0747740:intron 30.0%
CAGAATCAATATTTCAACTC+TGG - chr5_2:571988-572007 None:intergenic 30.0%
! CCTTTTCAAAGACAATATAC+TGG - chr5_2:572153-572172 None:intergenic 30.0%
! CCAGTATATTGTCTTTGAAA+AGG + chr5_2:572150-572169 Msa0747740:intron 30.0%
TGACATAATCTTCTCAACAT+TGG + chr5_2:572206-572225 Msa0747740:intron 30.0%
ATAAGTCATTCCATAAACCA+AGG - chr5_2:572273-572292 None:intergenic 30.0%
! TGCATCATACTTTTCTTGAA+GGG - chr5_2:572303-572322 None:intergenic 30.0%
! ATGCATCATACTTTTCTTGA+AGG - chr5_2:572304-572323 None:intergenic 30.0%
TCATTCATTAATTGTCAAGC+TGG + chr5_2:572449-572468 Msa0747740:CDS 30.0%
!! AATTGATAGCGAAATCTTTC+AGG - chr5_2:572496-572515 None:intergenic 30.0%
TGAAAGATTTCGCTATCAAT+TGG + chr5_2:572495-572514 Msa0747740:CDS 30.0%
TCATATTTCACAGCTACAAT+AGG - chr5_2:572568-572587 None:intergenic 30.0%
GTAGCTGTGAAATATGAATT+AGG + chr5_2:572571-572590 Msa0747740:intron 30.0%
GTGAAATATGAATTAGGAAG+TGG + chr5_2:572577-572596 Msa0747740:intron 30.0%
AATAAGTCTGATAATCTGCT+TGG + chr5_2:572619-572638 Msa0747740:intron 30.0%
CTTATGTAAATTCCTTCTGT+AGG + chr5_2:572677-572696 Msa0747740:CDS 30.0%
ACTTATAAGATCAATAGGAG+TGG - chr5_2:572782-572801 None:intergenic 30.0%
!!! CCCTTTTTAAGTTCTATACA+TGG + chr5_2:573198-573217 Msa0747740:CDS 30.0%
!!! CCCTTTTTAACTTCTATACA+TGG + chr5_2:573264-573283 Msa0747740:CDS 30.0%
AGAGATGATGAGTAAGTACA+TGG - chr5_2:569504-569523 None:intergenic 35.0%
! GAGAAAAACCCTAGGTTTTA+GGG - chr5_2:569542-569561 None:intergenic 35.0%
! AGAGAAAAACCCTAGGTTTT+AGG - chr5_2:569543-569562 None:intergenic 35.0%
GAGAAATTGTTGAAGGAAGT+TGG - chr5_2:569570-569589 None:intergenic 35.0%
TGGAACTGAGAAATTGTTGA+AGG - chr5_2:569577-569596 None:intergenic 35.0%
!! TTGATTCTTTGAGCATTGGT+TGG - chr5_2:569647-569666 None:intergenic 35.0%
CGATAAATCTCAAACACCAA+CGG - chr5_2:569924-569943 None:intergenic 35.0%
!! ATTTATCGTTTGATGGGTTG+TGG + chr5_2:569936-569955 Msa0747740:CDS 35.0%
!! TTTATCGTTTGATGGGTTGT+GGG + chr5_2:569937-569956 Msa0747740:CDS 35.0%
AGAAGTGAAGAGTGAAATTG+AGG + chr5_2:569962-569981 Msa0747740:CDS 35.0%
GAAGTGAAGAGTGAAATTGA+GGG + chr5_2:569963-569982 Msa0747740:CDS 35.0%
TTGTATGAAGAGTGAAGTTG+AGG + chr5_2:570022-570041 Msa0747740:CDS 35.0%
AAGAGTGAAGTTGAGGTTAA+TGG + chr5_2:570029-570048 Msa0747740:CDS 35.0%
!!! GGGTTTTGTTGATTTGATAC+CGG + chr5_2:570082-570101 Msa0747740:CDS 35.0%
!! TTGTTGATTTGATACCGGTT+TGG + chr5_2:570087-570106 Msa0747740:CDS 35.0%
!! TTGGTGGTGATTGTTTGAAA+GGG + chr5_2:570144-570163 Msa0747740:CDS 35.0%
! TTTTTCCCTTTTGTGAGTGA+TGG + chr5_2:570167-570186 Msa0747740:CDS 35.0%
! TTTTCCCTTTTGTGAGTGAT+GGG + chr5_2:570168-570187 Msa0747740:CDS 35.0%
!!! ATGTGTTTGATTTTTGAGGC+GGG + chr5_2:570269-570288 Msa0747740:CDS 35.0%
AGCTAATGTAATCTCAACTG+CGG + chr5_2:570465-570484 Msa0747740:intron 35.0%
CTTGTACACTTAGTAATTGC+TGG - chr5_2:570600-570619 None:intergenic 35.0%
GCAATTACTAAGTGTACAAG+CGG + chr5_2:570600-570619 Msa0747740:intron 35.0%
CAATTACTAAGTGTACAAGC+GGG + chr5_2:570601-570620 Msa0747740:intron 35.0%
CAGCTTATGAAAATAGACTG+TGG + chr5_2:570758-570777 Msa0747740:intron 35.0%
! GCTTATCAGATATGCTTTTG+AGG + chr5_2:571368-571387 Msa0747740:CDS 35.0%
!! TATGCTTTTGAGGATGATGT+TGG + chr5_2:571378-571397 Msa0747740:CDS 35.0%
CACATAGTTTCATGGAGAAA+AGG - chr5_2:571512-571531 None:intergenic 35.0%
CAGTGGCATCATAATATGAT+TGG - chr5_2:571605-571624 None:intergenic 35.0%
CAAGTAACCTCTCTATAAAG+GGG - chr5_2:571628-571647 None:intergenic 35.0%
CTCAAGTAACCTCTCTATAA+AGG - chr5_2:571630-571649 None:intergenic 35.0%
TAAGGAAAAGTGGTAAGTGT+GGG - chr5_2:571735-571754 None:intergenic 35.0%
ATAAGGAAAAGTGGTAAGTG+TGG - chr5_2:571736-571755 None:intergenic 35.0%
CAGGACTAAATAAGGAAAAG+TGG - chr5_2:571745-571764 None:intergenic 35.0%
!!! ATCCGACAGTATTTTTGGTT+CGG + chr5_2:571862-571881 Msa0747740:intron 35.0%
GAAAAGATTATAGGTCACTC+AGG + chr5_2:571905-571924 Msa0747740:intron 35.0%
GGTGAACTAAACAATTTCTC+TGG - chr5_2:572111-572130 None:intergenic 35.0%
GGGAACTATACTTGAAGAAT+CGG - chr5_2:572132-572151 None:intergenic 35.0%
! AATTCGAGTTCCTTGGTTTA+TGG + chr5_2:572260-572279 Msa0747740:intron 35.0%
!! TTTACTGGTCGTTTTGCTAT+AGG + chr5_2:572364-572383 Msa0747740:intron 35.0%
!! TTACTGGTCGTTTTGCTATA+GGG + chr5_2:572365-572384 Msa0747740:intron 35.0%
CATCATCACAGAATAGTACA+GGG - chr5_2:572420-572439 None:intergenic 35.0%
TCATCATCACAGAATAGTAC+AGG - chr5_2:572421-572440 None:intergenic 35.0%
! GTACTATTCTGTGATGATGA+TGG + chr5_2:572421-572440 Msa0747740:CDS 35.0%
ATGAATTAGGAAGTGGTTTC+TGG + chr5_2:572584-572603 Msa0747740:intron 35.0%
TGATAATCTGCTTGGTTACA+GGG + chr5_2:572627-572646 Msa0747740:intron 35.0%
TTCCCATTCAATTGATCAAC+TGG + chr5_2:572707-572726 Msa0747740:CDS 35.0%
TCCCATTCAATTGATCAACT+GGG + chr5_2:572708-572727 Msa0747740:CDS 35.0%
ACCCAGTTGATCAATTGAAT+GGG - chr5_2:572712-572731 None:intergenic 35.0%
AACCCAGTTGATCAATTGAA+TGG - chr5_2:572713-572732 None:intergenic 35.0%
AAAGAAAATGGAGGGGTAAT+TGG - chr5_2:572813-572832 None:intergenic 35.0%
ACTTCTCTTTGACTGTTAAG+AGG + chr5_2:572846-572865 Msa0747740:intron 35.0%
GCAAGGTGTATAATTGAATG+TGG + chr5_2:572894-572913 Msa0747740:intron 35.0%
TCAAGTTATATCAGTGTCGT+TGG + chr5_2:572929-572948 Msa0747740:intron 35.0%
ATCATCACCAGACAAACTTA+CGG - chr5_2:573349-573368 None:intergenic 35.0%
AAAACGCAAAGAAGGAATTG+AGG + chr5_2:573401-573420 Msa0747740:CDS 35.0%
!! TTTTAGGGAGTGGTTGTAAG+TGG - chr5_2:569527-569546 None:intergenic 40.0%
!! ATTGGTTGGTAGTAAAGTGG+GGG - chr5_2:569633-569652 None:intergenic 40.0%
!! CATTGGTTGGTAGTAAAGTG+GGG - chr5_2:569634-569653 None:intergenic 40.0%
!! GCATTGGTTGGTAGTAAAGT+GGG - chr5_2:569635-569654 None:intergenic 40.0%
!! AGCATTGGTTGGTAGTAAAG+TGG - chr5_2:569636-569655 None:intergenic 40.0%
TGAGGTGAAATCGGTGAAAT+TGG - chr5_2:569706-569725 None:intergenic 40.0%
GGAGAAGATTGAGGTGAAAT+CGG - chr5_2:569715-569734 None:intergenic 40.0%
TAGAACCACAGAAGTGGAAT+TGG - chr5_2:569765-569784 None:intergenic 40.0%
!! AGAAGCTTCTAGAACTTCAC+TGG + chr5_2:569818-569837 Msa0747740:CDS 40.0%
!! TTCTAGAACTTCACTGGTTG+CGG + chr5_2:569824-569843 Msa0747740:CDS 40.0%
!! TTATCGTTTGATGGGTTGTG+GGG + chr5_2:569938-569957 Msa0747740:CDS 40.0%
GAAGAGTGAAATTGAGGGTT+TGG + chr5_2:569968-569987 Msa0747740:CDS 40.0%
!! AAATTGAGGGTTTGGTGGAA+GGG + chr5_2:569976-569995 Msa0747740:CDS 40.0%
AGTGAAGTTGAGGTTAATGG+TGG + chr5_2:570032-570051 Msa0747740:CDS 40.0%
!! TGATTTGATACCGGTTTGGA+TGG + chr5_2:570091-570110 Msa0747740:CDS 40.0%
TCACAATCAACCATCCAAAC+CGG - chr5_2:570104-570123 None:intergenic 40.0%
GTTTGGATGGTTGATTGTGA+CGG + chr5_2:570104-570123 Msa0747740:CDS 40.0%
!! GTTGGTGGTGATTGTTTGAA+AGG + chr5_2:570143-570162 Msa0747740:CDS 40.0%
! TTTCCCTTTTGTGAGTGATG+GGG + chr5_2:570169-570188 Msa0747740:CDS 40.0%
!! ATTGAAATGGGTTGTGAGGT+TGG + chr5_2:570203-570222 Msa0747740:CDS 40.0%
!!! TGTGTTTGATTTTTGAGGCG+GGG + chr5_2:570270-570289 Msa0747740:CDS 40.0%
! TGGGGTATTTAGGATCTGTT+TGG + chr5_2:570624-570643 Msa0747740:intron 40.0%
TAAGCACTTGTCAGACTGTT+TGG + chr5_2:570664-570683 Msa0747740:intron 40.0%
AAGCACTTGTCAGACTGTTT+GGG + chr5_2:570665-570684 Msa0747740:intron 40.0%
TCGGTCATTATGTTGGAGTT+TGG + chr5_2:571035-571054 Msa0747740:intron 40.0%
!! CATTTTAGGAAGCCAGATCT+TGG + chr5_2:571077-571096 Msa0747740:intron 40.0%
AGTTGTCTCCTGTCTTTGTA+TGG + chr5_2:571185-571204 Msa0747740:intron 40.0%
GTTGTCTCCTGTCTTTGTAT+GGG + chr5_2:571186-571205 Msa0747740:intron 40.0%
AGATTGACCCATACAAAGAC+AGG - chr5_2:571196-571215 None:intergenic 40.0%
GATATGTCCTTGTGCTTTCT+GGG + chr5_2:571296-571315 Msa0747740:intron 40.0%
ATATGTCCTTGTGCTTTCTG+GGG + chr5_2:571297-571316 Msa0747740:intron 40.0%
TGACTTCCTGACTGCTTTAT+TGG + chr5_2:571344-571363 Msa0747740:CDS 40.0%
TAAGCACCAATAAAGCAGTC+AGG - chr5_2:571353-571372 None:intergenic 40.0%
TATGATGGTACTTACCAGCA+AGG - chr5_2:571425-571444 None:intergenic 40.0%
AGTTTCATGGAGAAAAGGAG+AGG - chr5_2:571507-571526 None:intergenic 40.0%
TCAGTTAAACCTATGCCAAG+TGG - chr5_2:571574-571593 None:intergenic 40.0%
GTGTGGGATCCTATCTAAAA+GGG - chr5_2:571719-571738 None:intergenic 40.0%
AGTGTGGGATCCTATCTAAA+AGG - chr5_2:571720-571739 None:intergenic 40.0%
!! CATGAGTTTAGTTCTGTGCT+TGG - chr5_2:571791-571810 None:intergenic 40.0%
TGCCGAACCAAAAATACTGT+CGG - chr5_2:571867-571886 None:intergenic 40.0%
! CTTTGAAAAGGGCTACTACT+TGG + chr5_2:572162-572181 Msa0747740:intron 40.0%
! TCAACATTGGCTACAATGCT+GGG + chr5_2:572219-572238 Msa0747740:intron 40.0%
CAAGGAACTCGAATTACCAA+CGG - chr5_2:572255-572274 None:intergenic 40.0%
CTGATAATCTGCTTGGTTAC+AGG + chr5_2:572626-572645 Msa0747740:intron 40.0%
GATCAATTGAATGGGAATGC+AGG - chr5_2:572704-572723 None:intergenic 40.0%
TCAATAGGAGTGGAAACACT+TGG - chr5_2:572772-572791 None:intergenic 40.0%
!! ATATCAGTGTCGTTGGTGAT+TGG + chr5_2:572936-572955 Msa0747740:intron 40.0%
TGGTGATTGGATTCTGACTA+TGG + chr5_2:572949-572968 Msa0747740:intron 40.0%
CGAAAGAGACTACGCATAAT+TGG - chr5_2:572985-573004 None:intergenic 40.0%
!! GAACACGGATTGGCAATATT+TGG + chr5_2:573096-573115 Msa0747740:CDS 40.0%
! GGATTGGCAATATTTGGTTG+TGG + chr5_2:573102-573121 Msa0747740:CDS 40.0%
GCAATATTTGGTTGTGGAAC+TGG + chr5_2:573108-573127 Msa0747740:CDS 40.0%
AAAAAGGGATGTTTGACCAC+CGG - chr5_2:573186-573205 None:intergenic 40.0%
! TCTATACATGGAGGGTTTTC+AGG + chr5_2:573210-573229 Msa0747740:CDS 40.0%
AAAAAGGGATGTTCAACCAC+CGG - chr5_2:573252-573271 None:intergenic 40.0%
TGTAGAGATGCATGATACTG+TGG + chr5_2:573320-573339 Msa0747740:CDS 40.0%
GCAACTAGAAAACGCAAAGA+AGG + chr5_2:573393-573412 Msa0747740:CDS 40.0%
! TCACTGTTGCTTGAATGTAC+AGG - chr5_2:573493-573512 None:intergenic 40.0%
ACAACCACTCCCTAAAACCT+AGG + chr5_2:569530-569549 Msa0747740:five_prime_UTR 45.0%
CAACCACTCCCTAAAACCTA+GGG + chr5_2:569531-569550 Msa0747740:five_prime_UTR 45.0%
!!! AAACCCTAGGTTTTAGGGAG+TGG - chr5_2:569537-569556 None:intergenic 45.0%
TGGTGAGAGAGAAAAACCCT+AGG - chr5_2:569550-569569 None:intergenic 45.0%
!!! AAAGTGGGGGGTGTTTTGAA+GGG - chr5_2:569620-569639 None:intergenic 45.0%
!!! TAAAGTGGGGGGTGTTTTGA+AGG - chr5_2:569621-569640 None:intergenic 45.0%
!! TTGGTTGGTAGTAAAGTGGG+GGG - chr5_2:569632-569651 None:intergenic 45.0%
TGCGGTATTCGGTTAGGAAA+CGG - chr5_2:569674-569693 None:intergenic 45.0%
TTCCTAACCGAATACCGCAA+CGG + chr5_2:569675-569694 Msa0747740:CDS 45.0%
! TGAAATTGGTAGCACCGTTG+CGG - chr5_2:569692-569711 None:intergenic 45.0%
ACCACAGAAGTGGAATTGGT+GGG - chr5_2:569761-569780 None:intergenic 45.0%
AACCACAGAAGTGGAATTGG+TGG - chr5_2:569762-569781 None:intergenic 45.0%
GCTGAATAGAACCACAGAAG+TGG - chr5_2:569771-569790 None:intergenic 45.0%
! AACTTCACTGGTTGCGGTTA+AGG + chr5_2:569830-569849 Msa0747740:CDS 45.0%
! ACTTCACTGGTTGCGGTTAA+GGG + chr5_2:569831-569850 Msa0747740:CDS 45.0%
GAGTGAAATTGAGGGTTTGG+TGG + chr5_2:569971-569990 Msa0747740:CDS 45.0%
!! GAAATTGAGGGTTTGGTGGA+AGG + chr5_2:569975-569994 Msa0747740:CDS 45.0%
!! AATTGAGGGTTTGGTGGAAG+GGG + chr5_2:569977-569996 Msa0747740:CDS 45.0%
! AATGGTGGTGATGCTAGAGT+TGG + chr5_2:570047-570066 Msa0747740:CDS 45.0%
! ATGGTGGTGATGCTAGAGTT+GGG + chr5_2:570048-570067 Msa0747740:CDS 45.0%
! TGATGCTAGAGTTGGGGTTT+TGG + chr5_2:570055-570074 Msa0747740:CDS 45.0%
!!! TAGAGTTGGGGTTTTGGAAG+AGG + chr5_2:570061-570080 Msa0747740:CDS 45.0%
!!! AGAGTTGGGGTTTTGGAAGA+GGG + chr5_2:570062-570081 Msa0747740:CDS 45.0%
GAACCCCATCACTCACAAAA+GGG - chr5_2:570175-570194 None:intergenic 45.0%
!! CTTTTGTGAGTGATGGGGTT+CGG + chr5_2:570174-570193 Msa0747740:CDS 45.0%
GTTCGGAAGGGGATTGAAAT+GGG + chr5_2:570191-570210 Msa0747740:CDS 45.0%
! GGGTTGTGAGGTTGGTTATT+TGG + chr5_2:570211-570230 Msa0747740:CDS 45.0%
! TGTGAGGTTGGTTATTTGGC+TGG + chr5_2:570215-570234 Msa0747740:CDS 45.0%
! GTGAGGTTGGTTATTTGGCT+GGG + chr5_2:570216-570235 Msa0747740:CDS 45.0%
! TGAGGTTGGTTATTTGGCTG+GGG + chr5_2:570217-570236 Msa0747740:CDS 45.0%
! TGCAGCAGTTCAGGTTATGA+CGG + chr5_2:570328-570347 Msa0747740:CDS 45.0%
! TTCAGGTTATGACGGGGTTT+CGG + chr5_2:570336-570355 Msa0747740:CDS 45.0%
! ATGGATTGCGGCTGCAATTT+AGG - chr5_2:570540-570559 None:intergenic 45.0%
TTACTAAGTGTACAAGCGGG+TGG + chr5_2:570604-570623 Msa0747740:intron 45.0%
TACTAAGTGTACAAGCGGGT+GGG + chr5_2:570605-570624 Msa0747740:intron 45.0%
GGATATGTCCTTGTGCTTTC+TGG + chr5_2:571295-571314 Msa0747740:intron 45.0%
! AAATCACCCCAGAAAGCACA+AGG - chr5_2:571306-571325 None:intergenic 45.0%
GTGGAACAGGAGAACAAAAC+AGG - chr5_2:571697-571716 None:intergenic 45.0%
CCTATCTAAAAGGGTGGAAC+AGG - chr5_2:571710-571729 None:intergenic 45.0%
! CCTGTTCCACCCTTTTAGAT+AGG + chr5_2:571707-571726 Msa0747740:intron 45.0%
TGGGATCCTATCTAAAAGGG+TGG - chr5_2:571716-571735 None:intergenic 45.0%
! CTCAACATTGGCTACAATGC+TGG + chr5_2:572218-572237 Msa0747740:intron 45.0%
CTCGAATTACCAACGGAAGA+AGG - chr5_2:572248-572267 None:intergenic 45.0%
!! CGTTGGTAATTCGAGTTCCT+TGG + chr5_2:572253-572272 Msa0747740:intron 45.0%
AGCGAAATCTTTCAGGCTGT+CGG - chr5_2:572489-572508 None:intergenic 45.0%
AGTCAGCTATACAGTCTGCT+AGG + chr5_2:572531-572550 Msa0747740:CDS 45.0%
TCTGCTTGGTTACAGGGAAA+AGG + chr5_2:572633-572652 Msa0747740:intron 45.0%
CTGCTTGGTTACAGGGAAAA+GGG + chr5_2:572634-572653 Msa0747740:intron 45.0%
TACAGGGAAAAGGGTGATCA+TGG + chr5_2:572643-572662 Msa0747740:intron 45.0%
ACAGGGAAAAGGGTGATCAT+GGG + chr5_2:572644-572663 Msa0747740:intron 45.0%
AACTGGGTTACTCGTCAAAG+CGG + chr5_2:572724-572743 Msa0747740:CDS 45.0%
AGCGGCATAGACAGAAAGAT+CGG + chr5_2:572742-572761 Msa0747740:CDS 45.0%
GAAAATGGAGGGGTAATTGG+TGG - chr5_2:572810-572829 None:intergenic 45.0%
AAGAACTGTGCCTATGCTTC+CGG + chr5_2:573164-573183 Msa0747740:CDS 45.0%
!!! GCGTTTTCTAGTTGCATCAG+TGG - chr5_2:573388-573407 None:intergenic 45.0%
AATTGCGCGGGAGAAGATTG+AGG - chr5_2:569724-569743 None:intergenic 50.0%
TGAAGTGGTGTGAATTGCGC+GGG - chr5_2:569736-569755 None:intergenic 50.0%
CTGAAGTGGTGTGAATTGCG+CGG - chr5_2:569737-569756 None:intergenic 50.0%
! TGGAATTGGTGGGTCTGAAG+TGG - chr5_2:569751-569770 None:intergenic 50.0%
ACCCACCAATTCCACTTCTG+TGG + chr5_2:569757-569776 Msa0747740:CDS 50.0%
CTGCTTGTTTCGTGTTGCGA+TGG + chr5_2:569864-569883 Msa0747740:CDS 50.0%
ATGGATGTGTCGCGATGAAG+AGG + chr5_2:569883-569902 Msa0747740:CDS 50.0%
TGTGTCGCGATGAAGAGGAT+CGG + chr5_2:569888-569907 Msa0747740:CDS 50.0%
! TGGTGGTGATGCTAGAGTTG+GGG + chr5_2:570049-570068 Msa0747740:CDS 50.0%
TGGATGGTTGATTGTGACGG+TGG + chr5_2:570107-570126 Msa0747740:CDS 50.0%
ATGGTTGATTGTGACGGTGG+TGG + chr5_2:570110-570129 Msa0747740:CDS 50.0%
CGAACCCCATCACTCACAAA+AGG - chr5_2:570176-570195 None:intergenic 50.0%
GGTTCGGAAGGGGATTGAAA+TGG + chr5_2:570190-570209 Msa0747740:CDS 50.0%
!! GGGGATTGAAATGGGTTGTG+AGG + chr5_2:570199-570218 Msa0747740:CDS 50.0%
! GCAGCAGTTCAGGTTATGAC+GGG + chr5_2:570329-570348 Msa0747740:CDS 50.0%
! CAGCAGTTCAGGTTATGACG+GGG + chr5_2:570330-570349 Msa0747740:CDS 50.0%
ACTAAGTGTACAAGCGGGTG+GGG + chr5_2:570606-570625 Msa0747740:intron 50.0%
! TACAAGCGGGTGGGGTATTT+AGG + chr5_2:570614-570633 Msa0747740:intron 50.0%
AGGAGACAACTCTACGTGGA+TGG - chr5_2:571176-571195 None:intergenic 50.0%
AGACAGGAGACAACTCTACG+TGG - chr5_2:571180-571199 None:intergenic 50.0%
AAGGAGATCACTGGCAAAGC+TGG - chr5_2:571406-571425 None:intergenic 50.0%
TTTGCCAGTGATCTCCTTGC+TGG + chr5_2:571408-571427 Msa0747740:CDS 50.0%
CTTACCAGCAAGGAGATCAC+TGG - chr5_2:571415-571434 None:intergenic 50.0%
AGCCATCTTACTCGTCCACT+TGG + chr5_2:571556-571575 Msa0747740:intron 50.0%
TGCCAAGTGGACGAGTAAGA+TGG - chr5_2:571561-571580 None:intergenic 50.0%
CTTACTCGTCCACTTGGCAT+AGG + chr5_2:571562-571581 Msa0747740:intron 50.0%
ACCTCTCTATAAAGGGGCAG+TGG - chr5_2:571622-571641 None:intergenic 50.0%
TAGGTCACTCAGGAGAGATG+AGG + chr5_2:571915-571934 Msa0747740:intron 50.0%
AGGTCACTCAGGAGAGATGA+GGG + chr5_2:571916-571935 Msa0747740:intron 50.0%
! AGAATGGCTTCTAGCTGCTG+AGG + chr5_2:573074-573093 Msa0747740:intron 50.0%
! CTTCTAGCTGCTGAGGAACA+CGG + chr5_2:573081-573100 Msa0747740:CDS 50.0%
! AACTGGCAAGCATCGTGCAA+AGG + chr5_2:573125-573144 Msa0747740:CDS 50.0%
! TGTTTGACCACCGGAAGCAT+AGG - chr5_2:573177-573196 None:intergenic 50.0%
AGGAACTGTGCCTATGCTTC+CGG + chr5_2:573230-573249 Msa0747740:CDS 50.0%
! TGTTCAACCACCGGAAGCAT+AGG - chr5_2:573243-573262 None:intergenic 50.0%
CACCGTTGCGGTATTCGGTT+AGG - chr5_2:569680-569699 None:intergenic 55.0%
GGTAGCACCGTTGCGGTATT+CGG - chr5_2:569685-569704 None:intergenic 55.0%
!!! GATCGGTGTTTTAGCGCCGT+TGG + chr5_2:569905-569924 Msa0747740:CDS 55.0%
! TGTGACGGTGGTGGTGAATC+TGG + chr5_2:570119-570138 Msa0747740:CDS 55.0%
! GTGACGGTGGTGGTGAATCT+GGG + chr5_2:570120-570139 Msa0747740:CDS 55.0%
! TGACGGTGGTGGTGAATCTG+GGG + chr5_2:570121-570140 Msa0747740:CDS 55.0%
! TGTGAGTGATGGGGTTCGGA+AGG + chr5_2:570178-570197 Msa0747740:CDS 55.0%
! GTGAGTGATGGGGTTCGGAA+GGG + chr5_2:570179-570198 Msa0747740:CDS 55.0%
! TGAGTGATGGGGTTCGGAAG+GGG + chr5_2:570180-570199 Msa0747740:CDS 55.0%
GTTGCATGCTGCAGCAGTTC+AGG + chr5_2:570319-570338 Msa0747740:CDS 55.0%
GCCACTGCCCCTTTATAGAG+AGG + chr5_2:571618-571637 Msa0747740:CDS 55.0%
GGGAATGCAGGACCTACAGA+AGG - chr5_2:572692-572711 None:intergenic 55.0%
AGCTGCTGAGGAACACGGAT+TGG + chr5_2:573086-573105 Msa0747740:CDS 55.0%
AACTGTGCCTATGCTTCCGG+TGG + chr5_2:573167-573186 Msa0747740:CDS 55.0%
AACTGTGCCTATGCTTCCGG+TGG + chr5_2:573167-573186 Msa0747740:CDS 55.0%
GTGGACGCCGTAAGTTTGTC+TGG + chr5_2:573339-573358 Msa0747740:CDS 55.0%
! GGTGGTGGTGAATCTGGGGT+TGG + chr5_2:570125-570144 Msa0747740:CDS 60.0%
! GGTGGTGAATCTGGGGTTGG+TGG + chr5_2:570128-570147 Msa0747740:CDS 60.0%
! TTTGAGGCGGGGATCGCGAG+AGG + chr5_2:570281-570300 Msa0747740:CDS 65.0%
TTGAGGCGGGGATCGCGAGA+GGG + chr5_2:570282-570301 Msa0747740:CDS 65.0%
GCTGGGCAGCCTTCTTCCGT+TGG + chr5_2:572236-572255 Msa0747740:intron 65.0%
TGAGGCGGGGATCGCGAGAG+GGG + chr5_2:570283-570302 Msa0747740:CDS 70.0%
GGGGATCGCGAGAGGGGAGA+AGG + chr5_2:570289-570308 Msa0747740:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 569494 573512 569494 ID=Msa0747740;Name=Msa0747740
chr5_2 mRNA 569494 573512 569494 ID=Msa0747740-mRNA-1;Parent=Msa0747740;Name=Msa0747740-mRNA-1;_AED=0.17;_eAED=0.19;_QI=109|0.4|0.5|1|1|1|6|0|559
chr5_2 exon 569494 570374 569494 ID=Msa0747740-mRNA-1:exon:108;Parent=Msa0747740-mRNA-1
chr5_2 exon 571334 571429 571334 ID=Msa0747740-mRNA-1:exon:109;Parent=Msa0747740-mRNA-1
chr5_2 exon 571584 571639 571584 ID=Msa0747740-mRNA-1:exon:110;Parent=Msa0747740-mRNA-1
chr5_2 exon 572386 572552 572386 ID=Msa0747740-mRNA-1:exon:111;Parent=Msa0747740-mRNA-1
chr5_2 exon 572648 572799 572648 ID=Msa0747740-mRNA-1:exon:112;Parent=Msa0747740-mRNA-1
chr5_2 exon 573076 573512 573076 ID=Msa0747740-mRNA-1:exon:113;Parent=Msa0747740-mRNA-1
chr5_2 five_prime_UTR 569494 569602 569494 ID=Msa0747740-mRNA-1:five_prime_utr;Parent=Msa0747740-mRNA-1
chr5_2 CDS 569603 570374 569603 ID=Msa0747740-mRNA-1:cds;Parent=Msa0747740-mRNA-1
chr5_2 CDS 571334 571429 571334 ID=Msa0747740-mRNA-1:cds;Parent=Msa0747740-mRNA-1
chr5_2 CDS 571584 571639 571584 ID=Msa0747740-mRNA-1:cds;Parent=Msa0747740-mRNA-1
chr5_2 CDS 572386 572552 572386 ID=Msa0747740-mRNA-1:cds;Parent=Msa0747740-mRNA-1
chr5_2 CDS 572648 572799 572648 ID=Msa0747740-mRNA-1:cds;Parent=Msa0747740-mRNA-1
chr5_2 CDS 573076 573512 573076 ID=Msa0747740-mRNA-1:cds;Parent=Msa0747740-mRNA-1
Gene Sequence

>Msa0747740

ATGGACACACAAAACCCTTCAAAACACCCCCCACTTTACTACCAACCAATGCTCAAAGAATCAATCAACCGTTTCCTAACCGAATACCGCAACGGTGCTACCAATTTCACCGATTTCACCTCAATCTTCTCCCGCGCAATTCACACCACTTCAGACCCACCAATTCCACTTCTGTGGTTCTATTCAGCCCTTGAATTTCATACTAATAGGTTAAGAGAAGCTTCTAGAACTTCACTGGTTGCGGTTAAGGGTTTGTTTCAGCTGCTTGTTTCGTGTTGCGATGGATGTGTCGCGATGAAGAGGATCGGTGTTTTAGCGCCGTTGGTGTTTGAGATTTATCGTTTGATGGGTTGTGGGGAAGAAGTGAAGAGTGAAATTGAGGGTTTGGTGGAAGGGGTTGTGAGTTATTGTAGCATTTATTGTATGAAGAGTGAAGTTGAGGTTAATGGTGGTGATGCTAGAGTTGGGGTTTTGGAAGAGGGTTTTGTTGATTTGATACCGGTTTGGATGGTTGATTGTGACGGTGGTGGTGAATCTGGGGTTGGTGGTGATTGTTTGAAAGGGTTTTTCCCTTTTGTGAGTGATGGGGTTCGGAAGGGGATTGAAATGGGTTGTGAGGTTGGTTATTTGGCTGGGGTTGTTATGTTTGAAGCTCTTTTGTTGAAAATGTGTTTGATTTTTGAGGCGGGGATCGCGAGAGGGGAGAAGGAGAAGAAGTTGCATGCTGCAGCAGTTCAGGTTATGACGGGGTTTCGGAATTTTTACTTTTTGGTTTTCATTTATGACTTCCTGACTGCTTTATTGGTGCTTATCAGATATGCTTTTGAGGATGATGTTGGAGCCAGCTTTGCCAGTGATCTCCTTGCTGGTTTAACTGAAGCTGAAGCCAATCATATTATGATGCCACTGCCCCTTTATAGAGAGGGTTCTGACAACGAAGTTCTTTTAAAAGAAGCCCTGTACTATTCTGTGATGATGATGGATTATTCATTCATTAATTGTCAAGCTGGAGTTTCTTTGTATGCCGACAGCCTGAAAGATTTCGCTATCAATTGGTTGTTTGTTGCTGAGTCAGCTATACAGTCTGCTAGGGAAAAGGGTGATCATGGGAAAGCTACTTCTTATGTAAATTCCTTCTGTAGGTCCTGCATTCCCATTCAATTGATCAACTGGGTTACTCGTCAAAGCGGCATAGACAGAAAGATCGGCAGACCAAGTGTTTCCACTCCTATTGATCTTATAAAATGGCTTCTAGCTGCTGAGGAACACGGATTGGCAATATTTGGTTGTGGAACTGGCAAGCATCGTGCAAAGGCTTTCGTTTTCACTTCAAGAACTGTGCCTATGCTTCCGGTGGTCAAACATCCCTTTTTAAGTTCTATACATGGAGGGTTTTCAGGAACTGTGCCTATGCTTCCGGTGGTTGAACATCCCTTTTTAACTTCTATACATGGAGGGTTCGTGACAGATAGAGTTCGTGCTAGTGATGTAGAGATGCATGATACTGTGGACGCCGTAAGTTTGTCTGGTGATGATAGAATGAGCACATTCACCACTGATGCAACTAGAAAACGCAAAGAAGGAATTGAGGATGATACAAAAGTACAGCTAAAGTATATGAGATGTCAGTTGCATGAGAATGCAGTGAGAGAAAACTCCTGTACATTCAAGCAACAGTGA

Protein sequence

>Msa0747740

MDTQNPSKHPPLYYQPMLKESINRFLTEYRNGATNFTDFTSIFSRAIHTTSDPPIPLLWFYSALEFHTNRLREASRTSLVAVKGLFQLLVSCCDGCVAMKRIGVLAPLVFEIYRLMGCGEEVKSEIEGLVEGVVSYCSIYCMKSEVEVNGGDARVGVLEEGFVDLIPVWMVDCDGGGESGVGGDCLKGFFPFVSDGVRKGIEMGCEVGYLAGVVMFEALLLKMCLIFEAGIARGEKEKKLHAAAVQVMTGFRNFYFLVFIYDFLTALLVLIRYAFEDDVGASFASDLLAGLTEAEANHIMMPLPLYREGSDNEVLLKEALYYSVMMMDYSFINCQAGVSLYADSLKDFAINWLFVAESAIQSAREKGDHGKATSYVNSFCRSCIPIQLINWVTRQSGIDRKIGRPSVSTPIDLIKWLLAAEEHGLAIFGCGTGKHRAKAFVFTSRTVPMLPVVKHPFLSSIHGGFSGTVPMLPVVEHPFLTSIHGGFVTDRVRASDVEMHDTVDAVSLSGDDRMSTFTTDATRKRKEGIEDDTKVQLKYMRCQLHENAVRENSCTFKQQ*