AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0563980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0563980 MtrunA17_Chr8g0377891 92.391 552 42 0 502 1053 614 1165 0.0 1016
Msa0563980 MtrunA17_Chr8g0377891 86.873 518 56 4 1 508 1 516 0.0 883
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0563980 AT3G23740.1 33.528 343 181 9 738 1054 240 561 8.33e-38 150

Find 248 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGCTGAAATTTCTGAATT+AGG 0.116328 4_1:-64444363 Msa0563980:CDS
TCTTGGAAAGATGGCAATTT+TGG 0.194696 4_1:+64441927 None:intergenic
GGCAACTACTTCCAGGTATT+TGG 0.200105 4_1:+64439136 None:intergenic
AGTGCTTTCCTGAGTGTTTC+TGG 0.202412 4_1:+64443093 None:intergenic
TGCAAATTTGAATCTGAAAT+TGG 0.209453 4_1:+64440808 None:intergenic
TTATTTCTCTTATCGGCTTT+GGG 0.216846 4_1:+64443055 None:intergenic
CGACAACATCCAGGTGTTTC+AGG 0.234770 4_1:+64440484 None:intergenic
CGTTCCGTTTGCGGGAATTT+CGG 0.239310 4_1:+64444850 None:intergenic
ATCCAAAAGCTTCTGAAGTT+TGG 0.240513 4_1:+64440846 None:intergenic
CTTCTGAATGGCCTAGTTAA+TGG 0.242037 4_1:-64441348 Msa0563980:CDS
CAGCTGAAATTTCTGAATTA+GGG 0.242152 4_1:-64444362 Msa0563980:CDS
GTTACATCGTTTCCACAAAA+AGG 0.243243 4_1:+64444657 None:intergenic
CCCCAAACTTCAGAAGCTTT+TGG 0.244143 4_1:-64440848 Msa0563980:CDS
TCTTCAGCATCTAACATATT+AGG 0.253871 4_1:+64441534 None:intergenic
TGTCAACGACACTCCTCTTT+TGG 0.257812 4_1:-64440206 Msa0563980:CDS
ATTATTTCTCTTATCGGCTT+TGG 0.268455 4_1:+64443054 None:intergenic
GCTCCATCGGTTCTGGAAAA+TGG 0.277936 4_1:-64444402 Msa0563980:CDS
AAATCTCTATGAACAGAAAT+TGG 0.285206 4_1:+64440595 None:intergenic
GATTTACCAGTCACACCTTT+AGG 0.298769 4_1:-64440577 Msa0563980:CDS
GAGTGGATTATTTCTCTTAT+CGG 0.300341 4_1:+64443048 None:intergenic
TCCAAAAGCTTCTGAAGTTT+GGG 0.301497 4_1:+64440847 None:intergenic
TGATTTAGACTCTGAGCTTC+AGG 0.305858 4_1:+64441564 None:intergenic
ATCGGGAAGTAGCTGAATTA+AGG 0.311036 4_1:-64444431 Msa0563980:CDS
TCCGAACAGAAATTGTTTCT+AGG 0.321079 4_1:-64439189 Msa0563980:three_prime_UTR
TCACCCATGGTGCAACTATC+AGG 0.328863 4_1:+64443490 None:intergenic
CAAGCTGTCAGATGAAGATT+TGG 0.331421 4_1:-64444232 Msa0563980:CDS
TTATCTTGTAGTTGAGATCT+TGG 0.337870 4_1:+64440667 None:intergenic
TTGATCTGTGACTTTCATTT+CGG 0.339926 4_1:+64440453 None:intergenic
CAAAGCCCTCTGCATCCTCT+TGG 0.342184 4_1:+64440382 None:intergenic
GTCAAATTGTATTGGCAATT+CGG 0.344690 4_1:+64441899 None:intergenic
GTCAAATAGACCCTACTATC+TGG 0.350858 4_1:-64440635 Msa0563980:CDS
CAATCATTTGAATCACTTCC+AGG 0.354354 4_1:+64440778 None:intergenic
GAAATTTCTGAATTAGGGTT+TGG 0.356119 4_1:-64444357 Msa0563980:CDS
AGATCGAACGTTCCGTTTGC+GGG 0.361742 4_1:+64444842 None:intergenic
GGTGATAGTACAGGAAATTC+TGG 0.363890 4_1:-64440745 Msa0563980:CDS
AAAAGGAAGCAATAACAAAA+AGG 0.364259 4_1:-64441310 Msa0563980:CDS
CGAATTTATTCCCCACTTGC+CGG 0.365212 4_1:-64444468 Msa0563980:CDS
TCTGAGGTATGCCCTGCATT+TGG 0.372011 4_1:+64443137 None:intergenic
AACAAACATAAAACGAAAAG+TGG 0.373630 4_1:+64439043 None:intergenic
TCATGACAATGACCCAATTT+CGG 0.374046 4_1:+64443583 None:intergenic
TCATGAAGACAAGAAGGTTA+TGG 0.374927 4_1:-64443566 Msa0563980:CDS
ATTCAATTACAAAAGGCTAA+TGG 0.376627 4_1:-64443866 Msa0563980:CDS
TTTGCTGCGGGAACTTGAAC+CGG 0.379639 4_1:+64444752 None:intergenic
CAAGAAGGTTATGGGAGGTC+AGG 0.382245 4_1:-64443557 Msa0563980:CDS
TCTTGAAACGGAACTTGAAC+CGG 0.382730 4_1:+64444708 None:intergenic
TTCCGAATCTGAAAGTCCTT+TGG 0.386134 4_1:+64444635 None:intergenic
TTCAGATCGTGTTGAGGAAA+AGG 0.395076 4_1:-64439266 Msa0563980:CDS
AAAGGAGTTCTCCAGATAGT+AGG 0.395976 4_1:+64440624 None:intergenic
ACTTGAACCGGAACTGAGTA+TGG 0.396740 4_1:+64444720 None:intergenic
TATCTTGTAGTTGAGATCTT+GGG 0.399426 4_1:+64440668 None:intergenic
GAGTGGATCAAAGGTGGATC+TGG 0.402257 4_1:-64443368 Msa0563980:CDS
AGCTCAGAGTCTAAATCAAT+TGG 0.402575 4_1:-64441559 Msa0563980:CDS
CAAAACACCAAGCTGCTCTA+AGG 0.402756 4_1:+64443225 None:intergenic
CATGAAGACAAGAAGGTTAT+GGG 0.402943 4_1:-64443565 Msa0563980:CDS
ATACTTCCTTCATAAGGTCT+TGG 0.405275 4_1:+64440269 None:intergenic
GTACACCTGCCTTGTCCAAC+GGG 0.410195 4_1:-64440516 Msa0563980:CDS
CCTACATAGATGACATCATT+AGG 0.410798 4_1:+64444183 None:intergenic
AAAGCCCTCTGCATCCTCTT+GGG 0.411441 4_1:+64440383 None:intergenic
CGAAGATGACGATCTTGTTA+AGG 0.411660 4_1:-64444562 Msa0563980:CDS
TTAAGCAAGATTCTTTCAAC+AGG 0.411745 4_1:-64443291 Msa0563980:CDS
AAGAAAGCAGTTTGTGGGTC+TGG 0.413277 4_1:-64441616 Msa0563980:CDS
TTTATAGGTATACCGAAATT+GGG 0.413347 4_1:-64443595 Msa0563980:intron
CAAAAGGCTAATGGATGCTA+TGG 0.417412 4_1:-64443857 Msa0563980:CDS
CAAACAACATGTTTCTGAGA+TGG 0.417734 4_1:+64440245 None:intergenic
ACACTCGCCATTCACTTTCT+CGG 0.420231 4_1:+64443423 None:intergenic
TGTTTCAGATGCTTTCCTGC+AGG 0.422230 4_1:+64439455 None:intergenic
TACTTCCTTCATAAGGTCTT+GGG 0.428201 4_1:+64440270 None:intergenic
GATGCTATGGGAGATAATTT+CGG 0.429372 4_1:-64443844 Msa0563980:intron
ACAATTTGACGCAAAAGAAA+TGG 0.430175 4_1:-64441886 Msa0563980:CDS
CACCGGTGTAGTATTGGATT+CGG 0.431433 4_1:+64441257 None:intergenic
CCACCATGTGTTGCAGTGTC+TGG 0.438116 4_1:+64441387 None:intergenic
GTGTTTCTGGTCAGATCCAT+AGG 0.440055 4_1:+64443106 None:intergenic
TCAAATTTGCAAGTAACTCC+TGG 0.441724 4_1:-64440796 Msa0563980:CDS
TGTTAAGATCATCATTCATC+TGG 0.443214 4_1:+64439406 None:intergenic
ATTTCAGTATCACGAGTCAT+TGG 0.444093 4_1:+64443187 None:intergenic
TTCAAATGATTGTGATCCTA+TGG 0.444913 4_1:-64440767 Msa0563980:CDS
GATGAAAGAAAGCAGTTTGT+GGG 0.445583 4_1:-64441621 Msa0563980:CDS
TTCTAGGAGTGGAACACATC+AGG 0.445762 4_1:-64439173 Msa0563980:three_prime_UTR
TGATACCAATGGGCCAGAAC+TGG 0.447913 4_1:-64443470 Msa0563980:CDS
TCCTAGAAACAATTTCTGTT+CGG 0.452318 4_1:+64439188 None:intergenic
GAATCAACCATACTCAGTTC+CGG 0.453096 4_1:-64444727 Msa0563980:CDS
CCGGCGCCGGCGATTCTGAT+CGG 0.453266 4_1:-64444449 Msa0563980:CDS
AAGGTCTTGGGCAACCTCTT+CGG 0.453280 4_1:+64440282 None:intergenic
ATTGGTGAAGATGCCAGTTC+TGG 0.453428 4_1:+64443457 None:intergenic
GGTTCTCACCGGTGTAGTAT+TGG 0.455125 4_1:+64441251 None:intergenic
TATTCCCCACTTGCCGGCGC+CGG 0.457589 4_1:-64444462 Msa0563980:CDS
CGGCGCCGGCGATTCTGATC+GGG 0.457703 4_1:-64444448 Msa0563980:CDS
TCGCCTCGCACGGAGGTCCT+TGG 0.459092 4_1:+64444488 None:intergenic
TTGGCAATTCGGAGGAGTCT+TGG 0.461511 4_1:+64441910 None:intergenic
TTCAGGTGATTTCTCCCCGT+TGG 0.463570 4_1:+64440501 None:intergenic
GTGACAACTTGATCAGCTAT+AGG 0.464581 4_1:+64440553 None:intergenic
CAAATGCTCTTTCTGCATGA+AGG 0.468866 4_1:+64440332 None:intergenic
CTTAACAAGATCGTCATCTT+CGG 0.472983 4_1:+64444563 None:intergenic
AGTACCAGGCAACTACTTCC+AGG 0.473034 4_1:+64439129 None:intergenic
AATCTTATCACACGCCATTA+CGG 0.473349 4_1:+64441761 None:intergenic
CAGGTTCATTCAATTACAAA+AGG 0.473778 4_1:-64443873 Msa0563980:CDS
CCGATCAGAATCGCCGGCGC+CGG 0.477749 4_1:+64444449 None:intergenic
TTTCTGGGTGCTAGAGATGT+TGG 0.478007 4_1:-64443337 Msa0563980:CDS
TTGAAATTGTTCAAAGCCCC+AGG 0.478616 4_1:-64443892 Msa0563980:CDS
TTCTCGGTATCTACTTGCAT+TGG 0.479236 4_1:+64443439 None:intergenic
ACCTCAGAATGTCAAACCTA+TGG 0.482063 4_1:-64443122 Msa0563980:CDS
AAAGCTCACCGTACCCGCTC+CGG 0.482065 4_1:-64444786 Msa0563980:CDS
AAACAACATGTTTCTGAGAT+GGG 0.482178 4_1:+64440246 None:intergenic
TTCTCCCCGTTGGACAAGGC+AGG 0.485412 4_1:+64440511 None:intergenic
CCTAATGATGTCATCTATGT+AGG 0.488989 4_1:-64444183 Msa0563980:CDS
AATGTGGATGAGGCAGGTGG+TGG 0.490071 4_1:+64444819 None:intergenic
TTCGGATGATAGATAATGTA+AGG 0.491626 4_1:+64439206 None:intergenic
GGTTATGGGAGGTCAGGGAT+TGG 0.491650 4_1:-64443551 Msa0563980:CDS
GATGGGATACTTCCTTCATA+AGG 0.492449 4_1:+64440263 None:intergenic
AAGCTGTCAGATGAAGATTT+GGG 0.498032 4_1:-64444231 Msa0563980:CDS
AACCAAAGGACTTTCAGATT+CGG 0.499438 4_1:-64444637 Msa0563980:CDS
AACAGGAACGGGAACGGAAG+AGG 0.499995 4_1:+64444680 None:intergenic
CGATCTGAAAACTTAACACT+TGG 0.500039 4_1:+64439280 None:intergenic
ACCTGACTTCCATCCAAAAG+AGG 0.501538 4_1:+64440193 None:intergenic
TCGGAGGAGTCTTGGAAAGA+TGG 0.504525 4_1:+64441918 None:intergenic
TGATGAAAGAAAGCAGTTTG+TGG 0.504775 4_1:-64441622 Msa0563980:CDS
CTGAAAATTCAAGCGAGGGC+CGG 0.506924 4_1:-64444077 Msa0563980:CDS
TGATCAGCTATAGGACCTAA+AGG 0.507484 4_1:+64440562 None:intergenic
GAGATCGAACGTTCCGTTTG+CGG 0.507508 4_1:+64444841 None:intergenic
TGTGATAATATTGTGCTCAA+TGG 0.508477 4_1:-64443163 Msa0563980:CDS
CGGGTGAATGTGGATGAGGC+AGG 0.508641 4_1:+64444813 None:intergenic
TTGACATCTGATAATCATGA+AGG 0.512397 4_1:-64443520 Msa0563980:CDS
CTTGGTGTTAGTTCCCGAAA+AGG 0.512977 4_1:-64440421 Msa0563980:CDS
CGCTCCGGTCAGATCCGGTC+CGG 0.514035 4_1:-64444771 Msa0563980:CDS
CAAATCTTCATCTGACAGCT+TGG 0.516191 4_1:+64444233 None:intergenic
GGTTCAAAGATGCCTTCAAA+AGG 0.517017 4_1:-64441327 Msa0563980:CDS
TTCAGGTGAAAGAAGCCTGC+AGG 0.518152 4_1:-64439470 Msa0563980:intron
ACTAGATTCTTCATTTGAGA+TGG 0.520142 4_1:+64441449 None:intergenic
AATCGCCGGCGCCGGCAAGT+GGG 0.521074 4_1:+64444457 None:intergenic
GGTACACCTGCCTTGTCCAA+CGG 0.522148 4_1:-64440517 Msa0563980:CDS
TCGCCATCAATTGCTGAAAA+CGG 0.522563 4_1:-64444333 Msa0563980:CDS
GCACCATGGGTGATACCAAT+GGG 0.525467 4_1:-64443480 Msa0563980:CDS
GACTGATCCTTGTTCCGTAA+TGG 0.525774 4_1:-64441775 Msa0563980:CDS
ACAGAAATTGTTTCTAGGAG+TGG 0.525781 4_1:-64439184 Msa0563980:three_prime_UTR
GAATCGCCGGCGCCGGCAAG+TGG 0.526594 4_1:+64444456 None:intergenic
GCAGCAGAGCAGAGCAGCCA+TGG 0.529136 4_1:-64444880 Msa0563980:exon
CCTCGCACGGAGGTCCTTGG+TGG 0.530427 4_1:+64444491 None:intergenic
CATCATTCAAGCAATGAGAA+AGG 0.534669 4_1:-64441660 Msa0563980:CDS
TCCATAGGTTTGACATTCTG+AGG 0.534755 4_1:+64443121 None:intergenic
GAAGAGGGTTCCTCTTGAAA+CGG 0.536043 4_1:+64444696 None:intergenic
AAGCCTGATAGTTGCACCAT+GGG 0.536746 4_1:-64443493 Msa0563980:CDS
CTGAAACACCTGGATGTTGT+CGG 0.536845 4_1:-64440483 Msa0563980:CDS
TGCGGGAACTTGAACCGGAC+CGG 0.537490 4_1:+64444757 None:intergenic
GTACCCGCTCCGGTCAGATC+CGG 0.538113 4_1:-64444776 Msa0563980:CDS
GGGAATAAATTCGCCTCGCA+CGG 0.538413 4_1:+64444478 None:intergenic
TGGCCCATTGGTATCACCCA+TGG 0.538471 4_1:+64443477 None:intergenic
GGACCGGATCTGACCGGAGC+GGG 0.538597 4_1:+64444773 None:intergenic
AAGGAGTTCTCCAGATAGTA+GGG 0.540773 4_1:+64440625 None:intergenic
GGATCTGACCGGAGCGGGTA+CGG 0.543526 4_1:+64444778 None:intergenic
AGCTTTGCTGCGGGTGAATG+TGG 0.543562 4_1:+64444803 None:intergenic
TGATTTCTCCCCGTTGGACA+AGG 0.545667 4_1:+64440507 None:intergenic
TGATCCGAAATTCCCGCAAA+CGG 0.547137 4_1:-64444854 Msa0563980:CDS
ACAGGAACGGGAACGGAAGA+GGG 0.547351 4_1:+64444681 None:intergenic
GATCCTATGGGTGATAGTAC+AGG 0.549573 4_1:-64440754 Msa0563980:CDS
AGTTGTCACTAGAGAAGAAG+TGG 0.553740 4_1:-64440539 Msa0563980:CDS
ACAGATCAACTTGATGCCCT+TGG 0.556087 4_1:-64440439 Msa0563980:CDS
GGCTGTGCCTTAGAGCAGCT+TGG 0.560567 4_1:-64443232 Msa0563980:CDS
ATAGGACCTAAAGGTGTGAC+TGG 0.561769 4_1:+64440571 None:intergenic
GTAGATACCGAGAAAGTGAA+TGG 0.562398 4_1:-64443430 Msa0563980:CDS
GGAATTTCGGATCACGTCCA+TGG 0.563873 4_1:+64444863 None:intergenic
GGTTCTAAATCGCTGCCCAC+GGG 0.564160 4_1:-64441083 Msa0563980:CDS
GCATCTTTGAACCATTAACT+AGG 0.564566 4_1:+64441337 None:intergenic
GTGTTTATCTGTGCCATCTG+TGG 0.564797 4_1:-64443404 Msa0563980:CDS
TGCACCATGGGTGATACCAA+TGG 0.565398 4_1:-64443481 Msa0563980:CDS
GACAAGCTCCGACAACATCC+AGG 0.565824 4_1:+64440475 None:intergenic
TTGATCCTCGCATCATCCAC+AGG 0.565826 4_1:+64444303 None:intergenic
TGTGATAAGATTGTCACAAA+TGG 0.565904 4_1:-64441750 Msa0563980:CDS
GCTCAATGGAGACCAAATGC+AGG 0.566097 4_1:-64443149 Msa0563980:CDS
AAGAAGGTTATGGGAGGTCA+GGG 0.566531 4_1:-64443556 Msa0563980:CDS
AAAAGGAACAGGAACGGGAA+CGG 0.566531 4_1:+64444674 None:intergenic
ATGATGCTCAAATGAAAGGT+TGG 0.567253 4_1:+64441677 None:intergenic
TACTTCCCGATCAGAATCGC+CGG 0.567923 4_1:+64444443 None:intergenic
TCCTACTGCTAGAAAGTACC+AGG 0.568219 4_1:+64439115 None:intergenic
TTGAATGATGCTCAAATGAA+AGG 0.568241 4_1:+64441673 None:intergenic
AGGTTCTAAATCGCTGCCCA+CGG 0.570248 4_1:-64441084 Msa0563980:CDS
CGATGTGAGGAATGTGGAAG+AGG 0.571374 4_1:-64444145 Msa0563980:CDS
CTTATCTGCACCCTCTGTTG+AGG 0.573087 4_1:-64441853 Msa0563980:CDS
GATAAGATTGTCACAAATGG+TGG 0.573529 4_1:-64441747 Msa0563980:CDS
GTGAATGTGGATGAGGCAGG+TGG 0.573911 4_1:+64444816 None:intergenic
AGATGCCAGTTCTGGCCCAT+TGG 0.574730 4_1:+64443465 None:intergenic
GGAAAATGGCAGTGTGAGGA+CGG 0.575753 4_1:-64444388 Msa0563980:CDS
TATTTCTCTTATCGGCTTTG+GGG 0.576654 4_1:+64443056 None:intergenic
ATCGCCGGCGCCGGCAAGTG+GGG 0.577299 4_1:+64444458 None:intergenic
AACAGAAATTGGTGAAACAA+AGG 0.578081 4_1:+64440606 None:intergenic
GGTACGGTGAGCTTTGCTGC+GGG 0.582951 4_1:+64444794 None:intergenic
GGGGCTTTGAACAATTTCAA+AGG 0.583740 4_1:+64443895 None:intergenic
GTTGGTAATGCTTTCGACCA+CGG 0.584626 4_1:-64443319 Msa0563980:CDS
AATACCTGGAAGTAGTTGCC+TGG 0.584643 4_1:-64439133 Msa0563980:three_prime_UTR
AAAAGGCTAATGGATGCTAT+GGG 0.591299 4_1:-64443856 Msa0563980:CDS
GAATCTGAAATTGGCAGAAG+TGG 0.591801 4_1:+64440817 None:intergenic
TTTGTAATTGAATGAACCTG+GGG 0.594391 4_1:+64443876 None:intergenic
TGTGGAAACGATGTAACCAA+AGG 0.595525 4_1:-64444651 Msa0563980:CDS
TGAAACAGAACAACTTGCAA+AGG 0.595999 4_1:-64439439 Msa0563980:CDS
GGTTCAAGTTCCGTTTCAAG+AGG 0.600363 4_1:-64444706 Msa0563980:CDS
TCACACGCCATTACGGAACA+AGG 0.601257 4_1:+64441768 None:intergenic
TGAACCGGACCGGATCTGAC+CGG 0.603361 4_1:+64444767 None:intergenic
GAATAATCTTGACTGTGCTA+AGG 0.603599 4_1:-64443269 Msa0563980:CDS
GCTGCGGGTGAATGTGGATG+AGG 0.605695 4_1:+64444809 None:intergenic
CCACCAAGGACCTCCGTGCG+AGG 0.606940 4_1:-64444491 Msa0563980:CDS
TCAGAGTTAGCCTCAACAGA+GGG 0.608322 4_1:+64441843 None:intergenic
TCATTGTCATGAAGACAAGA+AGG 0.608420 4_1:-64443572 Msa0563980:CDS
ACAAACATAAAACGAAAAGT+GGG 0.609505 4_1:+64439044 None:intergenic
GAGAAATCACCTGAAACACC+TGG 0.610420 4_1:-64440493 Msa0563980:CDS
CTCAATGGAGACCAAATGCA+GGG 0.614045 4_1:-64443148 Msa0563980:CDS
GACACTGCAACACATGGTGG+TGG 0.614063 4_1:-64441384 Msa0563980:CDS
ATGCTTGAGTGGATCAAAGG+TGG 0.615148 4_1:-64443374 Msa0563980:CDS
AGGTCCTTGGTGGTAGCACA+AGG 0.615884 4_1:+64444501 None:intergenic
TTCTGGAAAATGGCAGTGTG+AGG 0.618228 4_1:-64444392 Msa0563980:CDS
GCCTGGTACTTTCTAGCAGT+AGG 0.620569 4_1:-64439116 Msa0563980:three_prime_UTR
GGGTACGGTGAGCTTTGCTG+CGG 0.621821 4_1:+64444793 None:intergenic
TGGTACTTTCTAGCAGTAGG+AGG 0.621839 4_1:-64439113 Msa0563980:three_prime_UTR
GGTTGCCCAAGACCTTATGA+AGG 0.622380 4_1:-64440275 Msa0563980:CDS
GTGGATGATAAATGCTTGAG+TGG 0.624401 4_1:-64443385 Msa0563980:CDS
GGATCTGACCAGAAACACTC+AGG 0.625772 4_1:-64443101 Msa0563980:CDS
TAAATGCTTGAGTGGATCAA+AGG 0.628364 4_1:-64443377 Msa0563980:CDS
CCAAAAGCTTCTGAAGTTTG+GGG 0.630512 4_1:+64440848 None:intergenic
TCAGCTGCTAGATGCCGAAG+AGG 0.631980 4_1:-64440296 Msa0563980:CDS
GTAGCTGAAAATTCAAGCGA+GGG 0.632081 4_1:-64444081 Msa0563980:CDS
TAGAAGCTAGCTGCGATGTG+AGG 0.635076 4_1:-64444158 Msa0563980:CDS
CTCAGAGTTAGCCTCAACAG+AGG 0.638818 4_1:+64441842 None:intergenic
TTTAGACTCTGAGCTTCAGG+AGG 0.640447 4_1:+64441567 None:intergenic
TGTAGCTGAAAATTCAAGCG+AGG 0.644391 4_1:-64444082 Msa0563980:CDS
AACAATTTCAAAGGTAAACG+CGG 0.645334 4_1:+64443904 None:intergenic
TTACCAGACACTGCAACACA+TGG 0.645552 4_1:-64441390 Msa0563980:CDS
TCAAATGATTGTGATCCTAT+GGG 0.646538 4_1:-64440766 Msa0563980:CDS
TTTCCTGTACTATCACCCAT+AGG 0.646734 4_1:+64440751 None:intergenic
TCATGATTATCAGATGTCAA+AGG 0.647040 4_1:+64443523 None:intergenic
TAAGCCTGATAGTTGCACCA+TGG 0.647127 4_1:-64443494 Msa0563980:CDS
AAATTGTATTGGCAATTCGG+AGG 0.653709 4_1:+64441902 None:intergenic
AAGCATTTATCATCCACAGA+TGG 0.656457 4_1:+64443391 None:intergenic
AAAACCCAAGAGGATGCAGA+GGG 0.661927 4_1:-64440387 Msa0563980:CDS
GCTAAGGCTGCTGATCACAA+TGG 0.673146 4_1:-64443253 Msa0563980:CDS
ATACACCTGTGGATGATGCG+AGG 0.679193 4_1:-64444308 Msa0563980:CDS
TTCCGAATCCAATACTACAC+CGG 0.684766 4_1:-64441259 Msa0563980:intron
ATTCCCCTATCAAAATTCAG+AGG 0.686862 4_1:+64444258 None:intergenic
ATAAGATTGTCACAAATGGT+GGG 0.687693 4_1:-64441746 Msa0563980:CDS
GTTGCAGTGTCTGGTAACGC+CGG 0.688445 4_1:+64441396 None:intergenic
AATAAATTCGCCTCGCACGG+AGG 0.688523 4_1:+64444481 None:intergenic
GTTGTCACTAGAGAAGAAGT+GGG 0.694605 4_1:-64440538 Msa0563980:CDS
TCTACCTTGTGCTACCACCA+AGG 0.697929 4_1:-64444505 Msa0563980:CDS
GAAGACAAGAAGGTTATGGG+AGG 0.705451 4_1:-64443562 Msa0563980:CDS
ACATAGATGACATCATTAGG+TGG 0.709990 4_1:+64444186 None:intergenic
CCAGACACTGCAACACATGG+TGG 0.710994 4_1:-64441387 Msa0563980:CDS
TACACCTGCCTTGTCCAACG+GGG 0.713175 4_1:-64440515 Msa0563980:CDS
TGAAAACGGCGATACACCTG+TGG 0.720243 4_1:-64444319 Msa0563980:CDS
TAGCTGCGATGTGAGGAATG+TGG 0.763594 4_1:-64444151 Msa0563980:CDS
CGGACCGGATCTGACCGGAG+CGG 0.781159 4_1:+64444772 None:intergenic
AATCTTGCTTAACATCACCG+TGG 0.800564 4_1:+64443302 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTCATTTTTTTGAT+TGG - chr4_1:64442919-64442938 Msa0563980:intron 10.0%
!!! ATAAGTTTAGTTTTAAAAAA+CGG + chr4_1:64442947-64442966 None:intergenic 10.0%
!!! TTTTTTATTTGAATATTTTC+AGG - chr4_1:64444361-64444380 Msa0563980:CDS 10.0%
!! AAATAAACAAATTGTTTATT+TGG + chr4_1:64444519-64444538 None:intergenic 10.0%
!! TAAAAAAACAAATTTCTATA+AGG + chr4_1:64444782-64444801 None:intergenic 10.0%
!! TGATGAAAATAAAAATTGAA+AGG + chr4_1:64439833-64439852 None:intergenic 15.0%
!! ATTCAATCAATAAATAACAA+AGG + chr4_1:64440171-64440190 None:intergenic 15.0%
!! TATATGATATTAGTTAGATA+TGG - chr4_1:64441661-64441680 Msa0563980:CDS 15.0%
!! ATTTAAATAACCAAACTTAT+CGG + chr4_1:64443853-64443872 None:intergenic 15.0%
!!! TGATATAAATTTATTTTCTC+AGG - chr4_1:64443999-64444018 Msa0563980:intron 15.0%
!! ATAGTGAAAAATAAATACTA+GGG + chr4_1:64444863-64444882 None:intergenic 15.0%
!! AATAGTGAAAAATAAATACT+AGG + chr4_1:64444864-64444883 None:intergenic 15.0%
!!! ATGAAATTTTGTTAGTTGAT+TGG - chr4_1:64439899-64439918 Msa0563980:intron 20.0%
!! TGCAAACAACTAAATAATAA+AGG + chr4_1:64440051-64440070 None:intergenic 20.0%
!! AATTATATATCATGTAACCT+GGG - chr4_1:64441090-64441109 Msa0563980:intron 20.0%
!! TTAATATTGTATTGCATAAG+TGG + chr4_1:64441250-64441269 None:intergenic 20.0%
!!! TTAAGCAAATTTTGTTCTTT+GGG + chr4_1:64442134-64442153 None:intergenic 20.0%
!!! ATTAAGCAAATTTTGTTCTT+TGG + chr4_1:64442135-64442154 None:intergenic 20.0%
!! GATATATACACAAAAGATTA+TGG + chr4_1:64442621-64442640 None:intergenic 20.0%
!!! TTAAGTTTTTAAAACATGCT+GGG - chr4_1:64442788-64442807 Msa0563980:intron 20.0%
!!! AGTATTGGTTTTTATTCTAT+TGG - chr4_1:64442872-64442891 Msa0563980:intron 20.0%
!!! ACTAAACTTATACTACTTTT+AGG - chr4_1:64442956-64442975 Msa0563980:intron 20.0%
!!! TTTTTCTCAAAATTCCTTTT+CGG + chr4_1:64443444-64443463 None:intergenic 20.0%
!! ATAAAATGATCAGAAAAGAA+AGG + chr4_1:64443727-64443746 None:intergenic 20.0%
!! TGAAATGAAATAATAGTGAA+AGG + chr4_1:64443894-64443913 None:intergenic 20.0%
!! GCAAAATATTATAAACTTGT+CGG + chr4_1:64444053-64444072 None:intergenic 20.0%
!! TAATGTAGCATAAAAATAAG+AGG - chr4_1:64444314-64444333 Msa0563980:CDS 20.0%
!! TAAACAAATTGTTTATTTGG+AGG + chr4_1:64444516-64444535 None:intergenic 20.0%
!!! TAACCATTTTTTAATCTGTT+TGG + chr4_1:64444616-64444635 None:intergenic 20.0%
!!! TGTTGTATATACTCTTTTTA+CGG - chr4_1:64444824-64444843 Msa0563980:CDS 20.0%
!! TTTTGTAATTGAATGAACCT+GGG + chr4_1:64439976-64439995 None:intergenic 25.0%
! ATTCAATTACAAAAGGCTAA+TGG - chr4_1:64439982-64440001 Msa0563980:intron 25.0%
!! GATATTATTGTACGTGATTT+TGG - chr4_1:64440124-64440143 Msa0563980:intron 25.0%
!! AATTGGCATCGTAATTTTAT+AGG - chr4_1:64440238-64440257 Msa0563980:CDS 25.0%
!! TTTTATAGGTATACCGAAAT+TGG - chr4_1:64440252-64440271 Msa0563980:CDS 25.0%
! TTTATAGGTATACCGAAATT+GGG - chr4_1:64440253-64440272 Msa0563980:CDS 25.0%
! TTGACATTGTATTAGGTATT+AGG + chr4_1:64440930-64440949 None:intergenic 25.0%
! TACCTAATACAATGTCAATT+TGG - chr4_1:64440932-64440951 Msa0563980:intron 25.0%
! AACCAAATTGACATTGTATT+AGG + chr4_1:64440937-64440956 None:intergenic 25.0%
! TGACAATATATGCATATACA+TGG - chr4_1:64441051-64441070 Msa0563980:CDS 25.0%
!!! ATACATGGTTTTGTATTTGT+TGG - chr4_1:64441066-64441085 Msa0563980:CDS 25.0%
! CAATTATATATCATGTAACC+TGG - chr4_1:64441089-64441108 Msa0563980:intron 25.0%
! TTGGGAAGATTCTTAAAATA+TGG + chr4_1:64441197-64441216 None:intergenic 25.0%
!!! GAAGATTATTTCTGAAAAAC+CGG - chr4_1:64442433-64442452 Msa0563980:intron 25.0%
! AAAAGGAAGCAATAACAAAA+AGG - chr4_1:64442538-64442557 Msa0563980:intron 25.0%
! TATAATCAATGAGAAAGAGA+GGG + chr4_1:64442675-64442694 None:intergenic 25.0%
! TTATAATCAATGAGAAAGAG+AGG + chr4_1:64442676-64442695 None:intergenic 25.0%
!! TTGATCAAGTAATTTTGAAC+AGG - chr4_1:64442744-64442763 Msa0563980:intron 25.0%
!!! GTTAAGTTTTTAAAACATGC+TGG - chr4_1:64442787-64442806 Msa0563980:intron 25.0%
!! TTCTCATTTTCCAACAAAAT+CGG + chr4_1:64442838-64442857 None:intergenic 25.0%
! GAATAAAAACCAATACTTAC+AGG + chr4_1:64442869-64442888 None:intergenic 25.0%
!! TGCAAATTTGAATCTGAAAT+TGG + chr4_1:64443043-64443062 None:intergenic 25.0%
! AAATCTCTATGAACAGAAAT+TGG + chr4_1:64443256-64443275 None:intergenic 25.0%
!! TTTTCTCAAAATTCCTTTTC+GGG + chr4_1:64443443-64443462 None:intergenic 25.0%
!!! CTTGAGGTTTTATTTCTAAA+TGG + chr4_1:64444082-64444101 None:intergenic 25.0%
! ATAAAACCTCAAGTAAATTC+TGG - chr4_1:64444089-64444108 Msa0563980:CDS 25.0%
! AAAAAAATGGCAAAGTTACT+TGG + chr4_1:64444146-64444165 None:intergenic 25.0%
! AGTAGAAAAACAGTCAAATA+AGG + chr4_1:64444202-64444221 None:intergenic 25.0%
! CTGAATTTATTAAGTTACAC+GGG + chr4_1:64444261-64444280 None:intergenic 25.0%
! GCTGAATTTATTAAGTTACA+CGG + chr4_1:64444262-64444281 None:intergenic 25.0%
!! TATTTGGAGGAACAAATTTT+GGG + chr4_1:64444503-64444522 None:intergenic 25.0%
!! TTATTTGGAGGAACAAATTT+TGG + chr4_1:64444504-64444523 None:intergenic 25.0%
! CAACCAAACAGATTAAAAAA+TGG - chr4_1:64444610-64444629 Msa0563980:CDS 25.0%
! ACAAACATAAAACGAAAAGT+GGG + chr4_1:64444807-64444826 None:intergenic 25.0%
! AACAAACATAAAACGAAAAG+TGG + chr4_1:64444808-64444827 None:intergenic 25.0%
!! ATTAAGGTTTTATGCTCCAT+CGG - chr4_1:64439433-64439452 Msa0563980:CDS 30.0%
TCAGCTGAAATTTCTGAATT+AGG - chr4_1:64439485-64439504 Msa0563980:intron 30.0%
CAGCTGAAATTTCTGAATTA+GGG - chr4_1:64439486-64439505 Msa0563980:intron 30.0%
GAAATTTCTGAATTAGGGTT+TGG - chr4_1:64439491-64439510 Msa0563980:intron 30.0%
!!! TTTGAACAGAGCTATTTTTC+CGG + chr4_1:64439793-64439812 None:intergenic 30.0%
TTCAAAGGAGTAAATCTGTA+AGG - chr4_1:64439807-64439826 Msa0563980:intron 30.0%
TTTCATCATTGCATATGTGT+TGG - chr4_1:64439845-64439864 Msa0563980:intron 30.0%
AACAATTTCAAAGGTAAACG+CGG + chr4_1:64439947-64439966 None:intergenic 30.0%
TTTGTAATTGAATGAACCTG+GGG + chr4_1:64439975-64439994 None:intergenic 30.0%
! CTTTTGTAATTGAATGAACC+TGG + chr4_1:64439977-64439996 None:intergenic 30.0%
CAGGTTCATTCAATTACAAA+AGG - chr4_1:64439975-64439994 Msa0563980:intron 30.0%
!!! ATTTAGTTTTACATGTGCGA+CGG - chr4_1:64440085-64440104 Msa0563980:intron 30.0%
TCATGATTATCAGATGTCAA+AGG + chr4_1:64440328-64440347 None:intergenic 30.0%
TTGACATCTGATAATCATGA+AGG - chr4_1:64440328-64440347 Msa0563980:CDS 30.0%
TTAAGCAAGATTCTTTCAAC+AGG - chr4_1:64440557-64440576 Msa0563980:CDS 30.0%
TGTGATAATATTGTGCTCAA+TGG - chr4_1:64440685-64440704 Msa0563980:CDS 30.0%
!! TTATTTCTCTTATCGGCTTT+GGG + chr4_1:64440796-64440815 None:intergenic 30.0%
!! ATTATTTCTCTTATCGGCTT+TGG + chr4_1:64440797-64440816 None:intergenic 30.0%
!! GAGTGGATTATTTCTCTTAT+CGG + chr4_1:64440803-64440822 None:intergenic 30.0%
!! TATTTGTTTTCTGCCAGTTA+CGG - chr4_1:64440859-64440878 Msa0563980:CDS 30.0%
TGTTTAAACTTCCACTATAG+TGG - chr4_1:64440993-64441012 Msa0563980:intron 30.0%
GTTCATAAACCATATTTGCA+CGG - chr4_1:64441125-64441144 Msa0563980:intron 30.0%
TTCATAAACCATATTTGCAC+GGG - chr4_1:64441126-64441145 Msa0563980:intron 30.0%
TAGTTACCATAGTCATCTTT+GGG + chr4_1:64441215-64441234 None:intergenic 30.0%
!! CAAAGTTGACTTGAATACTT+TGG - chr4_1:64441848-64441867 Msa0563980:CDS 30.0%
! GTCAAATTGTATTGGCAATT+CGG + chr4_1:64441952-64441971 None:intergenic 30.0%
! TCTTTTGCGTCAAATTGTAT+TGG + chr4_1:64441960-64441979 None:intergenic 30.0%
ACAATTTGACGCAAAAGAAA+TGG - chr4_1:64441962-64441981 Msa0563980:intron 30.0%
TGTGATAAGATTGTCACAAA+TGG - chr4_1:64442098-64442117 Msa0563980:intron 30.0%
ATAAGATTGTCACAAATGGT+GGG - chr4_1:64442102-64442121 Msa0563980:intron 30.0%
TTGAATGATGCTCAAATGAA+AGG + chr4_1:64442178-64442197 None:intergenic 30.0%
TCTTCAGCATCTAACATATT+AGG + chr4_1:64442317-64442336 None:intergenic 30.0%
ACTAGATTCTTCATTTGAGA+TGG + chr4_1:64442402-64442421 None:intergenic 30.0%
AAAGCAAAAAGTCTTCTGAA+TGG - chr4_1:64442488-64442507 Msa0563980:intron 30.0%
!! TTGTTATTGCTTCCTTTTGA+AGG + chr4_1:64442536-64442555 None:intergenic 30.0%
! TTAAAAGAATGCAGGTCTTT+TGG + chr4_1:64442645-64442664 None:intergenic 30.0%
GGTAAATCTTAAAAGAATGC+AGG + chr4_1:64442653-64442672 None:intergenic 30.0%
ATAATCAATGAGAAAGAGAG+GGG + chr4_1:64442674-64442693 None:intergenic 30.0%
!!! GTTTTAAAAACTTAACCCGT+GGG + chr4_1:64442783-64442802 None:intergenic 30.0%
!!! TGTTTTAAAAACTTAACCCG+TGG + chr4_1:64442784-64442803 None:intergenic 30.0%
AGTCTAATTCCTGTAAGTAT+TGG - chr4_1:64442857-64442876 Msa0563980:intron 30.0%
TTCAAATGATTGTGATCCTA+TGG - chr4_1:64443081-64443100 Msa0563980:CDS 30.0%
TCAAATGATTGTGATCCTAT+GGG - chr4_1:64443082-64443101 Msa0563980:CDS 30.0%
TATCTTGTAGTTGAGATCTT+GGG + chr4_1:64443183-64443202 None:intergenic 30.0%
TTATCTTGTAGTTGAGATCT+TGG + chr4_1:64443184-64443203 None:intergenic 30.0%
AACAGAAATTGGTGAAACAA+AGG + chr4_1:64443245-64443264 None:intergenic 30.0%
TTGATCTGTGACTTTCATTT+CGG + chr4_1:64443398-64443417 None:intergenic 30.0%
!! ATTTTGAGAAAAAACCCAAG+AGG - chr4_1:64443451-64443470 Msa0563980:CDS 30.0%
!! AAACAACATGTTTCTGAGAT+GGG + chr4_1:64443605-64443624 None:intergenic 30.0%
ATAGTCATATCAACATCATG+TGG + chr4_1:64443686-64443705 None:intergenic 30.0%
ATTCTTCACGATAACTGAAA+TGG - chr4_1:64443748-64443767 Msa0563980:intron 30.0%
TTATTATGCAAAGCTTGTGA+TGG - chr4_1:64443803-64443822 Msa0563980:intron 30.0%
ATTATCTCATCCGATAAGTT+TGG - chr4_1:64443840-64443859 Msa0563980:intron 30.0%
TAATAGTGAAAGGAATTGCA+AGG + chr4_1:64443884-64443903 None:intergenic 30.0%
GGTCAAATGCACTAAAAAAA+TGG + chr4_1:64444159-64444178 None:intergenic 30.0%
! GCATATAAAGACGTTGATAA+TGG + chr4_1:64444284-64444303 None:intergenic 30.0%
TGTTAAGATCATCATTCATC+TGG + chr4_1:64444445-64444464 None:intergenic 30.0%
!! AGGAACAAATTTTGGGAATA+AGG + chr4_1:64444496-64444515 None:intergenic 30.0%
TTCGGATGATAGATAATGTA+AGG + chr4_1:64444645-64444664 None:intergenic 30.0%
TCCTAGAAACAATTTCTGTT+CGG + chr4_1:64444663-64444682 None:intergenic 30.0%
!!! GTGTTTTAAAACCAAATACC+TGG - chr4_1:64444701-64444720 Msa0563980:CDS 30.0%
!! ATGGTTGATTCTTTTTGCTG+CGG + chr4_1:64439112-64439131 None:intergenic 35.0%
GTTACATCGTTTCCACAAAA+AGG + chr4_1:64439194-64439213 None:intergenic 35.0%
AACCAAAGGACTTTCAGATT+CGG - chr4_1:64439211-64439230 Msa0563980:three_prime_UTR 35.0%
CTTAACAAGATCGTCATCTT+CGG + chr4_1:64439288-64439307 None:intergenic 35.0%
! TCACGTTTTGCTTTCTTGAA+AGG + chr4_1:64439314-64439333 None:intergenic 35.0%
ATTCCCCTATCAAAATTCAG+AGG + chr4_1:64439593-64439612 None:intergenic 35.0%
AAGCTGTCAGATGAAGATTT+GGG - chr4_1:64439617-64439636 Msa0563980:intron 35.0%
ACATAGATGACATCATTAGG+TGG + chr4_1:64439665-64439684 None:intergenic 35.0%
CCTACATAGATGACATCATT+AGG + chr4_1:64439668-64439687 None:intergenic 35.0%
CCTAATGATGTCATCTATGT+AGG - chr4_1:64439665-64439684 Msa0563980:intron 35.0%
! GGAAAAATAGCTCTGTTCAA+AGG - chr4_1:64439792-64439811 Msa0563980:intron 35.0%
! AAAAGGCTAATGGATGCTAT+GGG - chr4_1:64439992-64440011 Msa0563980:intron 35.0%
GATGCTATGGGAGATAATTT+CGG - chr4_1:64440004-64440023 Msa0563980:intron 35.0%
! TTGGTAGTTGTTCTATGTAG+AGG - chr4_1:64440143-64440162 Msa0563980:intron 35.0%
! AATTAGCTTGATATGTGCGA+TGG - chr4_1:64440211-64440230 Msa0563980:CDS 35.0%
ATATGTGCGATGGAACTAAT+TGG - chr4_1:64440221-64440240 Msa0563980:CDS 35.0%
TCATGACAATGACCCAATTT+CGG + chr4_1:64440268-64440287 None:intergenic 35.0%
TCATTGTCATGAAGACAAGA+AGG - chr4_1:64440276-64440295 Msa0563980:CDS 35.0%
TCATGAAGACAAGAAGGTTA+TGG - chr4_1:64440282-64440301 Msa0563980:CDS 35.0%
CATGAAGACAAGAAGGTTAT+GGG - chr4_1:64440283-64440302 Msa0563980:CDS 35.0%
AAGCATTTATCATCCACAGA+TGG + chr4_1:64440460-64440479 None:intergenic 35.0%
TAAATGCTTGAGTGGATCAA+AGG - chr4_1:64440471-64440490 Msa0563980:CDS 35.0%
GAATAATCTTGACTGTGCTA+AGG - chr4_1:64440579-64440598 Msa0563980:CDS 35.0%
ATTTCAGTATCACGAGTCAT+TGG + chr4_1:64440664-64440683 None:intergenic 35.0%
!! TATTTCTCTTATCGGCTTTG+GGG + chr4_1:64440795-64440814 None:intergenic 35.0%
! CTTACATGTTTTCTCTTGAG+TGG + chr4_1:64440820-64440839 None:intergenic 35.0%
!! ATTTGTTTTCTGCCAGTTAC+GGG - chr4_1:64440860-64440879 Msa0563980:CDS 35.0%
AATCTTCCCAAAGATGACTA+TGG - chr4_1:64441206-64441225 Msa0563980:intron 35.0%
GTAGTTACCATAGTCATCTT+TGG + chr4_1:64441216-64441235 None:intergenic 35.0%
TGCATAAGTGGTTGAAAACA+TGG + chr4_1:64441238-64441257 None:intergenic 35.0%
!!! AAAGTGCTTGCTGATTTTAC+AGG - chr4_1:64441690-64441709 Msa0563980:CDS 35.0%
!! CGCCTCTTCATTTTTATGAT+GGG + chr4_1:64441733-64441752 None:intergenic 35.0%
CCATCATAAAAATGAAGAGG+CGG - chr4_1:64441731-64441750 Msa0563980:CDS 35.0%
! TCTTGGAAAGATGGCAATTT+TGG + chr4_1:64441924-64441943 None:intergenic 35.0%
! AAATTGTATTGGCAATTCGG+AGG + chr4_1:64441949-64441968 None:intergenic 35.0%
AATCTTATCACACGCCATTA+CGG + chr4_1:64442090-64442109 None:intergenic 35.0%
GATAAGATTGTCACAAATGG+TGG - chr4_1:64442101-64442120 Msa0563980:intron 35.0%
! AGCAAATTTTGTTCTTTGGG+TGG + chr4_1:64442131-64442150 None:intergenic 35.0%
ATGATGCTCAAATGAAAGGT+TGG + chr4_1:64442174-64442193 None:intergenic 35.0%
CATCATTCAAGCAATGAGAA+AGG - chr4_1:64442188-64442207 Msa0563980:intron 35.0%
TGATGAAAGAAAGCAGTTTG+TGG - chr4_1:64442226-64442245 Msa0563980:intron 35.0%
GATGAAAGAAAGCAGTTTGT+GGG - chr4_1:64442227-64442246 Msa0563980:intron 35.0%
AGCTCAGAGTCTAAATCAAT+TGG - chr4_1:64442289-64442308 Msa0563980:intron 35.0%
!!! CGTCATTTTTGCAAATTGCA+TGG + chr4_1:64442355-64442374 None:intergenic 35.0%
TTGCAAAAATGACGATGTTG+TGG - chr4_1:64442361-64442380 Msa0563980:intron 35.0%
GCATCTTTGAACCATTAACT+AGG + chr4_1:64442514-64442533 None:intergenic 35.0%
!!! AACAAAAAGGCTAGTTTTGC+TGG - chr4_1:64442551-64442570 Msa0563980:intron 35.0%
TTTGCTGGTGAGATGAAAAA+TGG - chr4_1:64442566-64442585 Msa0563980:intron 35.0%
CAAAAGATTATGGTTCTCAC+CGG + chr4_1:64442611-64442630 None:intergenic 35.0%
! AAGATTGCTTCCGATTTTGT+TGG - chr4_1:64442825-64442844 Msa0563980:intron 35.0%
!! TCCAAAAGCTTCTGAAGTTT+GGG + chr4_1:64443004-64443023 None:intergenic 35.0%
!! ATCCAAAAGCTTCTGAAGTT+TGG + chr4_1:64443005-64443024 None:intergenic 35.0%
TCAAATTTGCAAGTAACTCC+TGG - chr4_1:64443052-64443071 Msa0563980:CDS 35.0%
CAATCATTTGAATCACTTCC+AGG + chr4_1:64443073-64443092 None:intergenic 35.0%
TACTTCCTTCATAAGGTCTT+GGG + chr4_1:64443581-64443600 None:intergenic 35.0%
ATACTTCCTTCATAAGGTCT+TGG + chr4_1:64443582-64443601 None:intergenic 35.0%
! CAAACAACATGTTTCTGAGA+TGG + chr4_1:64443606-64443625 None:intergenic 35.0%
ACTTGGAATTTCTCACCATA+GGG + chr4_1:64444129-64444148 None:intergenic 35.0%
TACTTGGAATTTCTCACCAT+AGG + chr4_1:64444130-64444149 None:intergenic 35.0%
TGAAACAGAACAACTTGCAA+AGG - chr4_1:64444409-64444428 Msa0563980:CDS 35.0%
CGATCTGAAAACTTAACACT+TGG + chr4_1:64444571-64444590 None:intergenic 35.0%
! TAAGTTTTCAGATCGTGTTG+AGG - chr4_1:64444576-64444595 Msa0563980:CDS 35.0%
! TCCGAACAGAAATTGTTTCT+AGG - chr4_1:64444659-64444678 Msa0563980:CDS 35.0%
!! ACAGAAATTGTTTCTAGGAG+TGG - chr4_1:64444664-64444683 Msa0563980:CDS 35.0%
!! TGGTTGATTCTTTTTGCTGC+GGG + chr4_1:64439111-64439130 None:intergenic 40.0%
GAATCAACCATACTCAGTTC+CGG - chr4_1:64439121-64439140 Msa0563980:three_prime_UTR 40.0%
TCTTGAAACGGAACTTGAAC+CGG + chr4_1:64439143-64439162 None:intergenic 40.0%
TCCACAAAAAGGAACAGGAA+CGG + chr4_1:64439183-64439202 None:intergenic 40.0%
TCGTTTCCACAAAAAGGAAC+AGG + chr4_1:64439188-64439207 None:intergenic 40.0%
TGTGGAAACGATGTAACCAA+AGG - chr4_1:64439197-64439216 Msa0563980:three_prime_UTR 40.0%
TTCCGAATCTGAAAGTCCTT+TGG + chr4_1:64439216-64439235 None:intergenic 40.0%
CGAAGATGACGATCTTGTTA+AGG - chr4_1:64439286-64439305 Msa0563980:CDS 40.0%
ATCGGGAAGTAGCTGAATTA+AGG - chr4_1:64439417-64439436 Msa0563980:CDS 40.0%
TCGCCATCAATTGCTGAAAA+CGG - chr4_1:64439515-64439534 Msa0563980:intron 40.0%
!! ACGAGCCTCTGAATTTTGAT+AGG - chr4_1:64439585-64439604 Msa0563980:intron 40.0%
!! CGAGCCTCTGAATTTTGATA+GGG - chr4_1:64439586-64439605 Msa0563980:intron 40.0%
!! GAGCCTCTGAATTTTGATAG+GGG - chr4_1:64439587-64439606 Msa0563980:intron 40.0%
CAAATCTTCATCTGACAGCT+TGG + chr4_1:64439618-64439637 None:intergenic 40.0%
CAAGCTGTCAGATGAAGATT+TGG - chr4_1:64439616-64439635 Msa0563980:intron 40.0%
! TTTTCAGCTACATTAGCAGC+AGG + chr4_1:64439758-64439777 None:intergenic 40.0%
TGTAGCTGAAAATTCAAGCG+AGG - chr4_1:64439766-64439785 Msa0563980:intron 40.0%
GTAGCTGAAAATTCAAGCGA+GGG - chr4_1:64439767-64439786 Msa0563980:intron 40.0%
GTTGATTGGATTCTTGATGC+AGG - chr4_1:64439913-64439932 Msa0563980:intron 40.0%
!! GGGGCTTTGAACAATTTCAA+AGG + chr4_1:64439956-64439975 None:intergenic 40.0%
TTGAAATTGTTCAAAGCCCC+AGG - chr4_1:64439956-64439975 Msa0563980:intron 40.0%
! CAAAAGGCTAATGGATGCTA+TGG - chr4_1:64439991-64440010 Msa0563980:intron 40.0%
TTCTCGGTATCTACTTGCAT+TGG + chr4_1:64440412-64440431 None:intergenic 40.0%
GTAGATACCGAGAAAGTGAA+TGG - chr4_1:64440418-64440437 Msa0563980:CDS 40.0%
GTGGATGATAAATGCTTGAG+TGG - chr4_1:64440463-64440482 Msa0563980:CDS 40.0%
AATCTTGCTTAACATCACCG+TGG + chr4_1:64440549-64440568 None:intergenic 40.0%
ACCTCAGAATGTCAAACCTA+TGG - chr4_1:64440726-64440745 Msa0563980:CDS 40.0%
TCCATAGGTTTGACATTCTG+AGG + chr4_1:64440730-64440749 None:intergenic 40.0%
CAAAATGTCTAACCCGTAAC+TGG + chr4_1:64440875-64440894 None:intergenic 40.0%
AATTTGGTTAAACCCTCAGC+TGG - chr4_1:64440948-64440967 Msa0563980:intron 40.0%
ATTTGGTTAAACCCTCAGCT+GGG - chr4_1:64440949-64440968 Msa0563980:intron 40.0%
CCTAAAAAAAACCCAGCTGA+GGG + chr4_1:64440963-64440982 None:intergenic 40.0%
!!! CCTCAGCTGGGTTTTTTTTA+GGG - chr4_1:64440961-64440980 Msa0563980:intron 40.0%
AAGTTCACTAGCCACTATAG+TGG + chr4_1:64441007-64441026 None:intergenic 40.0%
TCCTATAGTTGACTGAACCA+GGG + chr4_1:64441166-64441185 None:intergenic 40.0%
!! GCTGATTTTACAGGTACATC+TGG - chr4_1:64441699-64441718 Msa0563980:CDS 40.0%
GGCCCATCATAAAAATGAAG+AGG - chr4_1:64441728-64441747 Msa0563980:CDS 40.0%
!! CCGCCTCTTCATTTTTATGA+TGG + chr4_1:64441734-64441753 None:intergenic 40.0%
! AGAGGCGGATTTATATGCAA+AGG - chr4_1:64441746-64441765 Msa0563980:CDS 40.0%
! TTTGAGATGGCAAAGGAAGT+TGG + chr4_1:64441776-64441795 None:intergenic 40.0%
!! TCTTCACTTTGAGATGGCAA+AGG + chr4_1:64441783-64441802 None:intergenic 40.0%
! GAAGCTTCTTCACTTTGAGA+TGG + chr4_1:64441789-64441808 None:intergenic 40.0%
CCATGAGATGACATATTAGC+AGG + chr4_1:64441894-64441913 None:intergenic 40.0%
CCTGCTAATATGTCATCTCA+TGG - chr4_1:64441891-64441910 Msa0563980:CDS 40.0%
TGATTTAGACTCTGAGCTTC+AGG + chr4_1:64442287-64442306 None:intergenic 40.0%
CTTCTGAATGGCCTAGTTAA+TGG - chr4_1:64442500-64442519 Msa0563980:intron 40.0%
GGTTCAAAGATGCCTTCAAA+AGG - chr4_1:64442521-64442540 Msa0563980:intron 40.0%
TTCCGAATCCAATACTACAC+CGG - chr4_1:64442589-64442608 Msa0563980:intron 40.0%
!! CCAAAAGCTTCTGAAGTTTG+GGG + chr4_1:64443003-64443022 None:intergenic 40.0%
! GAATCTGAAATTGGCAGAAG+TGG + chr4_1:64443034-64443053 None:intergenic 40.0%
TTTCCTGTACTATCACCCAT+AGG + chr4_1:64443100-64443119 None:intergenic 40.0%
GGTGATAGTACAGGAAATTC+TGG - chr4_1:64443103-64443122 Msa0563980:CDS 40.0%
GTCAAATAGACCCTACTATC+TGG - chr4_1:64443213-64443232 Msa0563980:CDS 40.0%
AAGGAGTTCTCCAGATAGTA+GGG + chr4_1:64443226-64443245 None:intergenic 40.0%
AAAGGAGTTCTCCAGATAGT+AGG + chr4_1:64443227-64443246 None:intergenic 40.0%
GATTTACCAGTCACACCTTT+AGG - chr4_1:64443271-64443290 Msa0563980:CDS 40.0%
TGATCAGCTATAGGACCTAA+AGG + chr4_1:64443289-64443308 None:intergenic 40.0%
GTGACAACTTGATCAGCTAT+AGG + chr4_1:64443298-64443317 None:intergenic 40.0%
AGTTGTCACTAGAGAAGAAG+TGG - chr4_1:64443309-64443328 Msa0563980:CDS 40.0%
GTTGTCACTAGAGAAGAAGT+GGG - chr4_1:64443310-64443329 Msa0563980:CDS 40.0%
!! TTTTCGGGAACTAACACCAA+GGG + chr4_1:64443428-64443447 None:intergenic 40.0%
CAAATGCTCTTTCTGCATGA+AGG + chr4_1:64443519-64443538 None:intergenic 40.0%
GATGGGATACTTCCTTCATA+AGG + chr4_1:64443588-64443607 None:intergenic 40.0%
ATAGGGCCAGAATTTACTTG+AGG + chr4_1:64444098-64444117 None:intergenic 40.0%
TTGGAATTTCTCACCATAGG+GGG + chr4_1:64444127-64444146 None:intergenic 40.0%
CTTGGAATTTCTCACCATAG+GGG + chr4_1:64444128-64444147 None:intergenic 40.0%
GACAACGAAGCTATCTCATA+AGG + chr4_1:64444180-64444199 None:intergenic 40.0%
GGAATAAGGTATGCACATAC+AGG + chr4_1:64444482-64444501 None:intergenic 40.0%
TTCAGATCGTGTTGAGGAAA+AGG - chr4_1:64444582-64444601 Msa0563980:CDS 40.0%
GCAGTAGGAGGAAAAATAGA+TGG - chr4_1:64444747-64444766 Msa0563980:CDS 40.0%
TGATCCGAAATTCCCGCAAA+CGG - chr4_1:64438994-64439013 Msa0563980:three_prime_UTR 45.0%
ACTTGAACCGGAACTGAGTA+TGG + chr4_1:64439131-64439150 None:intergenic 45.0%
! GGTTCAAGTTCCGTTTCAAG+AGG - chr4_1:64439142-64439161 Msa0563980:three_prime_UTR 45.0%
GAAGAGGGTTCCTCTTGAAA+CGG + chr4_1:64439155-64439174 None:intergenic 45.0%
AAAAGGAACAGGAACGGGAA+CGG + chr4_1:64439177-64439196 None:intergenic 45.0%
CCACAAAAAGGAACAGGAAC+GGG + chr4_1:64439182-64439201 None:intergenic 45.0%
CGAATTTATTCCCCACTTGC+CGG - chr4_1:64439380-64439399 Msa0563980:intron 45.0%
!!! GTTTTATGCTCCATCGGTTC+TGG - chr4_1:64439439-64439458 Msa0563980:CDS 45.0%
! TTCTGGAAAATGGCAGTGTG+AGG - chr4_1:64439456-64439475 Msa0563980:CDS 45.0%
!! TCGCCGTTTTCAGCAATTGA+TGG + chr4_1:64439521-64439540 None:intergenic 45.0%
GAAGACAAGAAGGTTATGGG+AGG - chr4_1:64440286-64440305 Msa0563980:CDS 45.0%
AAGAAGGTTATGGGAGGTCA+GGG - chr4_1:64440292-64440311 Msa0563980:CDS 45.0%
TAAGCCTGATAGTTGCACCA+TGG - chr4_1:64440354-64440373 Msa0563980:CDS 45.0%
AAGCCTGATAGTTGCACCAT+GGG - chr4_1:64440355-64440374 Msa0563980:CDS 45.0%
ATTGGTGAAGATGCCAGTTC+TGG + chr4_1:64440394-64440413 None:intergenic 45.0%
ACACTCGCCATTCACTTTCT+CGG + chr4_1:64440428-64440447 None:intergenic 45.0%
GTGTTTATCTGTGCCATCTG+TGG - chr4_1:64440444-64440463 Msa0563980:CDS 45.0%
ATGCTTGAGTGGATCAAAGG+TGG - chr4_1:64440474-64440493 Msa0563980:CDS 45.0%
! GATCTGGCTGCAGATTTTCT+GGG - chr4_1:64440496-64440515 Msa0563980:CDS 45.0%
TTTCTGGGTGCTAGAGATGT+TGG - chr4_1:64440511-64440530 Msa0563980:CDS 45.0%
!! GTTGGTAATGCTTTCGACCA+CGG - chr4_1:64440529-64440548 Msa0563980:CDS 45.0%
CAAAACACCAAGCTGCTCTA+AGG + chr4_1:64440626-64440645 None:intergenic 45.0%
CTCAATGGAGACCAAATGCA+GGG - chr4_1:64440700-64440719 Msa0563980:CDS 45.0%
!! GTGTTTCTGGTCAGATCCAT+AGG + chr4_1:64440745-64440764 None:intergenic 45.0%
AGTGCTTTCCTGAGTGTTTC+TGG + chr4_1:64440758-64440777 None:intergenic 45.0%
!!! CCCTCAGCTGGGTTTTTTTT+AGG - chr4_1:64440960-64440979 Msa0563980:intron 45.0%
CCCTAAAAAAAACCCAGCTG+AGG + chr4_1:64440964-64440983 None:intergenic 45.0%
ATCAGCTTCCCGTGCAAATA+TGG + chr4_1:64441137-64441156 None:intergenic 45.0%
CCTATAGTTGACTGAACCAG+GGG + chr4_1:64441165-64441184 None:intergenic 45.0%
CTCCTATAGTTGACTGAACC+AGG + chr4_1:64441167-64441186 None:intergenic 45.0%
CTGGTTCAGTCAACTATAGG+AGG - chr4_1:64441165-64441184 Msa0563980:intron 45.0%
TACAGGTACATCTGGTGATC+AGG - chr4_1:64441707-64441726 Msa0563980:CDS 45.0%
AGCAGACAAATGACAGTCAG+TGG - chr4_1:64441813-64441832 Msa0563980:CDS 45.0%
!! GGAAAGATGGCAATTTTGGC+TGG + chr4_1:64441920-64441939 None:intergenic 45.0%
! TCAGAGTTAGCCTCAACAGA+GGG + chr4_1:64442008-64442027 None:intergenic 45.0%
GACTGATCCTTGTTCCGTAA+TGG - chr4_1:64442073-64442092 Msa0563980:intron 45.0%
AAGAAAGCAGTTTGTGGGTC+TGG - chr4_1:64442232-64442251 Msa0563980:intron 45.0%
TTTAGACTCTGAGCTTCAGG+AGG + chr4_1:64442284-64442303 None:intergenic 45.0%
TTACCAGACACTGCAACACA+TGG - chr4_1:64442458-64442477 Msa0563980:intron 45.0%
! CACCGGTGTAGTATTGGATT+CGG + chr4_1:64442594-64442613 None:intergenic 45.0%
! CCCCAAACTTCAGAAGCTTT+TGG - chr4_1:64443000-64443019 Msa0563980:intron 45.0%
GATCCTATGGGTGATAGTAC+AGG - chr4_1:64443094-64443113 Msa0563980:CDS 45.0%
! ATAGGACCTAAAGGTGTGAC+TGG + chr4_1:64443280-64443299 None:intergenic 45.0%
GAGAAATCACCTGAAACACC+TGG - chr4_1:64443355-64443374 Msa0563980:CDS 45.0%
CTGAAACACCTGGATGTTGT+CGG - chr4_1:64443365-64443384 Msa0563980:CDS 45.0%
ACAGATCAACTTGATGCCCT+TGG - chr4_1:64443409-64443428 Msa0563980:CDS 45.0%
!! CTTTTCGGGAACTAACACCA+AGG + chr4_1:64443429-64443448 None:intergenic 45.0%
!! CTTGGTGTTAGTTCCCGAAA+AGG - chr4_1:64443427-64443446 Msa0563980:CDS 45.0%
AAAAACCCAAGAGGATGCAG+AGG - chr4_1:64443460-64443479 Msa0563980:CDS 45.0%
AAAACCCAAGAGGATGCAGA+GGG - chr4_1:64443461-64443480 Msa0563980:CDS 45.0%
! TGTCAACGACACTCCTCTTT+TGG - chr4_1:64443642-64443661 Msa0563980:intron 45.0%
! AACGACACTCCTCTTTTGGA+TGG - chr4_1:64443646-64443665 Msa0563980:intron 45.0%
! TCCTCTTTTGGATGGAAGTC+AGG - chr4_1:64443654-64443673 Msa0563980:intron 45.0%
ACCTGACTTCCATCCAAAAG+AGG + chr4_1:64443658-64443677 None:intergenic 45.0%
TGGAATTTCTCACCATAGGG+GGG + chr4_1:64444126-64444145 None:intergenic 45.0%
TGTTTCAGATGCTTTCCTGC+AGG + chr4_1:64444396-64444415 None:intergenic 45.0%
! TTCTAGGAGTGGAACACATC+AGG - chr4_1:64444675-64444694 Msa0563980:CDS 45.0%
GGCAACTACTTCCAGGTATT+TGG + chr4_1:64444715-64444734 None:intergenic 45.0%
AATACCTGGAAGTAGTTGCC+TGG - chr4_1:64444715-64444734 Msa0563980:CDS 45.0%
!! TCCTACTGCTAGAAAGTACC+AGG + chr4_1:64444736-64444755 None:intergenic 45.0%
! TGGTACTTTCTAGCAGTAGG+AGG - chr4_1:64444735-64444754 Msa0563980:CDS 45.0%
GGAATTTCGGATCACGTCCA+TGG + chr4_1:64438988-64439007 None:intergenic 50.0%
CGTTCCGTTTGCGGGAATTT+CGG + chr4_1:64439001-64439020 None:intergenic 50.0%
AGATCGAACGTTCCGTTTGC+GGG + chr4_1:64439009-64439028 None:intergenic 50.0%
GAGATCGAACGTTCCGTTTG+CGG + chr4_1:64439010-64439029 None:intergenic 50.0%
TTTGCTGCGGGAACTTGAAC+CGG + chr4_1:64439099-64439118 None:intergenic 50.0%
! CCCGTTCCTGTTCCTTTTTG+TGG - chr4_1:64439179-64439198 Msa0563980:three_prime_UTR 50.0%
TCTACCTTGTGCTACCACCA+AGG - chr4_1:64439343-64439362 Msa0563980:intron 50.0%
AATAAATTCGCCTCGCACGG+AGG + chr4_1:64439370-64439389 None:intergenic 50.0%
GGGAATAAATTCGCCTCGCA+CGG + chr4_1:64439373-64439392 None:intergenic 50.0%
TACTTCCCGATCAGAATCGC+CGG + chr4_1:64439408-64439427 None:intergenic 50.0%
!! GCTCCATCGGTTCTGGAAAA+TGG - chr4_1:64439446-64439465 Msa0563980:CDS 50.0%
!!! CTGCCATTTTCCAGAACCGA+TGG + chr4_1:64439452-64439471 None:intergenic 50.0%
GGAAAATGGCAGTGTGAGGA+CGG - chr4_1:64439460-64439479 Msa0563980:CDS 50.0%
TGAAAACGGCGATACACCTG+TGG - chr4_1:64439529-64439548 Msa0563980:intron 50.0%
ATACACCTGTGGATGATGCG+AGG - chr4_1:64439540-64439559 Msa0563980:intron 50.0%
TTGATCCTCGCATCATCCAC+AGG + chr4_1:64439548-64439567 None:intergenic 50.0%
TAGAAGCTAGCTGCGATGTG+AGG - chr4_1:64439690-64439709 Msa0563980:intron 50.0%
TAGCTGCGATGTGAGGAATG+TGG - chr4_1:64439697-64439716 Msa0563980:intron 50.0%
CGATGTGAGGAATGTGGAAG+AGG - chr4_1:64439703-64439722 Msa0563980:intron 50.0%
CTGAAAATTCAAGCGAGGGC+CGG - chr4_1:64439771-64439790 Msa0563980:intron 50.0%
ACATGTGCGACGGAGCTAAT+TGG - chr4_1:64440095-64440114 Msa0563980:intron 50.0%
CGACGGAGCTAATTGGCTAT+TGG - chr4_1:64440102-64440121 Msa0563980:intron 50.0%
CAAGAAGGTTATGGGAGGTC+AGG - chr4_1:64440291-64440310 Msa0563980:CDS 50.0%
TCACCCATGGTGCAACTATC+AGG + chr4_1:64440361-64440380 None:intergenic 50.0%
TGCACCATGGGTGATACCAA+TGG - chr4_1:64440367-64440386 Msa0563980:CDS 50.0%
GCACCATGGGTGATACCAAT+GGG - chr4_1:64440368-64440387 Msa0563980:CDS 50.0%
TGATACCAATGGGCCAGAAC+TGG - chr4_1:64440378-64440397 Msa0563980:CDS 50.0%
GAGTGGATCAAAGGTGGATC+TGG - chr4_1:64440480-64440499 Msa0563980:CDS 50.0%
! GGATCTGGCTGCAGATTTTC+TGG - chr4_1:64440495-64440514 Msa0563980:CDS 50.0%
GCTAAGGCTGCTGATCACAA+TGG - chr4_1:64440595-64440614 Msa0563980:CDS 50.0%
GCTCAATGGAGACCAAATGC+AGG - chr4_1:64440699-64440718 Msa0563980:CDS 50.0%
! TCTGAGGTATGCCCTGCATT+TGG + chr4_1:64440714-64440733 None:intergenic 50.0%
GGATCTGACCAGAAACACTC+AGG - chr4_1:64440747-64440766 Msa0563980:CDS 50.0%
GTAACCTGGGATGTCTTTGC+AGG - chr4_1:64441103-64441122 Msa0563980:intron 50.0%
TGAACCTGCAAAGACATCCC+AGG + chr4_1:64441110-64441129 None:intergenic 50.0%
CCCCTGGTTCAGTCAACTAT+AGG - chr4_1:64441162-64441181 Msa0563980:intron 50.0%
TCGGAGGAGTCTTGGAAAGA+TGG + chr4_1:64441933-64441952 None:intergenic 50.0%
TTGGCAATTCGGAGGAGTCT+TGG + chr4_1:64441941-64441960 None:intergenic 50.0%
CTTATCTGCACCCTCTGTTG+AGG - chr4_1:64441995-64442014 Msa0563980:intron 50.0%
! CTCAGAGTTAGCCTCAACAG+AGG + chr4_1:64442009-64442028 None:intergenic 50.0%
TCACACGCCATTACGGAACA+AGG + chr4_1:64442083-64442102 None:intergenic 50.0%
GGTTCTCACCGGTGTAGTAT+TGG + chr4_1:64442600-64442619 None:intergenic 50.0%
!! AGGTTCTAAATCGCTGCCCA+CGG - chr4_1:64442764-64442783 Msa0563980:intron 50.0%
TGATTTCTCCCCGTTGGACA+AGG + chr4_1:64443344-64443363 None:intergenic 50.0%
TTCAGGTGATTTCTCCCCGT+TGG + chr4_1:64443350-64443369 None:intergenic 50.0%
CGACAACATCCAGGTGTTTC+AGG + chr4_1:64443367-64443386 None:intergenic 50.0%
AAAGCCCTCTGCATCCTCTT+GGG + chr4_1:64443468-64443487 None:intergenic 50.0%
AAGGTCTTGGGCAACCTCTT+CGG + chr4_1:64443569-64443588 None:intergenic 50.0%
GGTTGCCCAAGACCTTATGA+AGG - chr4_1:64443573-64443592 Msa0563980:CDS 50.0%
ACCATAGGGGGGACACTATA+GGG + chr4_1:64444115-64444134 None:intergenic 50.0%
TTCAGGTGAAAGAAGCCTGC+AGG - chr4_1:64444378-64444397 Msa0563980:CDS 50.0%
AGTACCAGGCAACTACTTCC+AGG + chr4_1:64444722-64444741 None:intergenic 50.0%
! GCCTGGTACTTTCTAGCAGT+AGG - chr4_1:64444732-64444751 Msa0563980:CDS 50.0%
AATGTGGATGAGGCAGGTGG+TGG + chr4_1:64439032-64439051 None:intergenic 55.0%
GTGAATGTGGATGAGGCAGG+TGG + chr4_1:64439035-64439054 None:intergenic 55.0%
AGCTTTGCTGCGGGTGAATG+TGG + chr4_1:64439048-64439067 None:intergenic 55.0%
ACAGGAACGGGAACGGAAGA+GGG + chr4_1:64439170-64439189 None:intergenic 55.0%
AACAGGAACGGGAACGGAAG+AGG + chr4_1:64439171-64439190 None:intergenic 55.0%
! AGGTCCTTGGTGGTAGCACA+AGG + chr4_1:64439350-64439369 None:intergenic 55.0%
GGTTATGGGAGGTCAGGGAT+TGG - chr4_1:64440297-64440316 Msa0563980:CDS 55.0%
TGGCCCATTGGTATCACCCA+TGG + chr4_1:64440374-64440393 None:intergenic 55.0%
! AGATGCCAGTTCTGGCCCAT+TGG + chr4_1:64440386-64440405 None:intergenic 55.0%
GGGAAGCTGATCAAAACCCC+TGG - chr4_1:64441146-64441165 Msa0563980:intron 55.0%
! GTTGCAGTGTCTGGTAACGC+CGG + chr4_1:64442455-64442474 None:intergenic 55.0%
CCACCATGTGTTGCAGTGTC+TGG + chr4_1:64442464-64442483 None:intergenic 55.0%
CCAGACACTGCAACACATGG+TGG - chr4_1:64442461-64442480 Msa0563980:intron 55.0%
GACACTGCAACACATGGTGG+TGG - chr4_1:64442464-64442483 Msa0563980:intron 55.0%
!! GGTTCTAAATCGCTGCCCAC+GGG - chr4_1:64442765-64442784 Msa0563980:intron 55.0%
GGTACACCTGCCTTGTCCAA+CGG - chr4_1:64443331-64443350 Msa0563980:CDS 55.0%
GTACACCTGCCTTGTCCAAC+GGG - chr4_1:64443332-64443351 Msa0563980:CDS 55.0%
TACACCTGCCTTGTCCAACG+GGG - chr4_1:64443333-64443352 Msa0563980:CDS 55.0%
GACAAGCTCCGACAACATCC+AGG + chr4_1:64443376-64443395 None:intergenic 55.0%
CAAAGCCCTCTGCATCCTCT+TGG + chr4_1:64443469-64443488 None:intergenic 55.0%
TCAGCTGCTAGATGCCGAAG+AGG - chr4_1:64443552-64443571 Msa0563980:CDS 55.0%
CACCATAGGGGGGACACTAT+AGG + chr4_1:64444116-64444135 None:intergenic 55.0%
CGGGTGAATGTGGATGAGGC+AGG + chr4_1:64439038-64439057 None:intergenic 60.0%
GCTGCGGGTGAATGTGGATG+AGG + chr4_1:64439042-64439061 None:intergenic 60.0%
GGTACGGTGAGCTTTGCTGC+GGG + chr4_1:64439057-64439076 None:intergenic 60.0%
GGGTACGGTGAGCTTTGCTG+CGG + chr4_1:64439058-64439077 None:intergenic 60.0%
AAAGCTCACCGTACCCGCTC+CGG - chr4_1:64439062-64439081 Msa0563980:three_prime_UTR 60.0%
TGAACCGGACCGGATCTGAC+CGG + chr4_1:64439084-64439103 None:intergenic 60.0%
TGCGGGAACTTGAACCGGAC+CGG + chr4_1:64439094-64439113 None:intergenic 60.0%
GGCTGTGCCTTAGAGCAGCT+TGG - chr4_1:64440616-64440635 Msa0563980:CDS 60.0%
TTCTCCCCGTTGGACAAGGC+AGG + chr4_1:64443340-64443359 None:intergenic 60.0%
GCCCTATAGTGTCCCCCCTA+TGG - chr4_1:64444111-64444130 Msa0563980:CDS 60.0%
GGATCTGACCGGAGCGGGTA+CGG + chr4_1:64439073-64439092 None:intergenic 65.0%
GTACCCGCTCCGGTCAGATC+CGG - chr4_1:64439072-64439091 Msa0563980:three_prime_UTR 65.0%
TATTCCCCACTTGCCGGCGC+CGG - chr4_1:64439386-64439405 Msa0563980:intron 65.0%
GGACCGGATCTGACCGGAGC+GGG + chr4_1:64439078-64439097 None:intergenic 70.0%
CGGACCGGATCTGACCGGAG+CGG + chr4_1:64439079-64439098 None:intergenic 70.0%
CGCTCCGGTCAGATCCGGTC+CGG - chr4_1:64439077-64439096 Msa0563980:three_prime_UTR 70.0%
CCTCGCACGGAGGTCCTTGG+TGG + chr4_1:64439360-64439379 None:intergenic 70.0%
CCACCAAGGACCTCCGTGCG+AGG - chr4_1:64439357-64439376 Msa0563980:intron 70.0%
TCGCCTCGCACGGAGGTCCT+TGG + chr4_1:64439363-64439382 None:intergenic 70.0%
!! AATCGCCGGCGCCGGCAAGT+GGG + chr4_1:64439394-64439413 None:intergenic 70.0%
CCGATCAGAATCGCCGGCGC+CGG + chr4_1:64439402-64439421 None:intergenic 70.0%
!! CCGGCGCCGGCGATTCTGAT+CGG - chr4_1:64439399-64439418 Msa0563980:CDS 70.0%
!! CGGCGCCGGCGATTCTGATC+GGG - chr4_1:64439400-64439419 Msa0563980:CDS 70.0%
!! ATCGCCGGCGCCGGCAAGTG+GGG + chr4_1:64439393-64439412 None:intergenic 75.0%
!! GAATCGCCGGCGCCGGCAAG+TGG + chr4_1:64439395-64439414 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 64438970 64444900 64438970 ID=Msa0563980;Name=Msa0563980
chr4_1 mRNA 64438970 64444900 64438970 ID=Msa0563980-mRNA-1;Parent=Msa0563980;Name=Msa0563980-mRNA-1;_AED=0.08;_eAED=0.08;_QI=17|0.85|0.87|1|1|1|8|264|1057
chr4_1 exon 64438970 64439314 64438970 ID=Msa0563980-mRNA-1:exon:20632;Parent=Msa0563980-mRNA-1
chr4_1 exon 64439389 64439487 64439389 ID=Msa0563980-mRNA-1:exon:20631;Parent=Msa0563980-mRNA-1
chr4_1 exon 64440195 64440892 64440195 ID=Msa0563980-mRNA-1:exon:20630;Parent=Msa0563980-mRNA-1
chr4_1 exon 64441002 64441104 64441002 ID=Msa0563980-mRNA-1:exon:20629;Parent=Msa0563980-mRNA-1
chr4_1 exon 64441260 64441949 64441260 ID=Msa0563980-mRNA-1:exon:20628;Parent=Msa0563980-mRNA-1
chr4_1 exon 64443036 64443610 64443036 ID=Msa0563980-mRNA-1:exon:20627;Parent=Msa0563980-mRNA-1
chr4_1 exon 64443845 64443935 64443845 ID=Msa0563980-mRNA-1:exon:20626;Parent=Msa0563980-mRNA-1
chr4_1 exon 64444047 64444900 64444047 ID=Msa0563980-mRNA-1:exon:20625;Parent=Msa0563980-mRNA-1
chr4_1 five_prime_UTR 64444884 64444900 64444884 ID=Msa0563980-mRNA-1:five_prime_utr;Parent=Msa0563980-mRNA-1
chr4_1 CDS 64444047 64444883 64444047 ID=Msa0563980-mRNA-1:cds;Parent=Msa0563980-mRNA-1
chr4_1 CDS 64443845 64443935 64443845 ID=Msa0563980-mRNA-1:cds;Parent=Msa0563980-mRNA-1
chr4_1 CDS 64443036 64443610 64443036 ID=Msa0563980-mRNA-1:cds;Parent=Msa0563980-mRNA-1
chr4_1 CDS 64441260 64441949 64441260 ID=Msa0563980-mRNA-1:cds;Parent=Msa0563980-mRNA-1
chr4_1 CDS 64441002 64441104 64441002 ID=Msa0563980-mRNA-1:cds;Parent=Msa0563980-mRNA-1
chr4_1 CDS 64440195 64440892 64440195 ID=Msa0563980-mRNA-1:cds;Parent=Msa0563980-mRNA-1
chr4_1 CDS 64439389 64439487 64439389 ID=Msa0563980-mRNA-1:cds;Parent=Msa0563980-mRNA-1
chr4_1 CDS 64439234 64439314 64439234 ID=Msa0563980-mRNA-1:cds;Parent=Msa0563980-mRNA-1
chr4_1 three_prime_UTR 64438970 64439233 64438970 ID=Msa0563980-mRNA-1:three_prime_utr;Parent=Msa0563980-mRNA-1
Gene Sequence

>Msa0563980

ATGGACGTGATCCGAAATTCCCGCAAACGGAACGTTCGATCTCCACCACCTGCCTCATCCACATTCACCCGCAGCAAAGCTCACCGTACCCGCTCCGGTCAGATCCGGTCCGGTTCAAGTTCCCGCAGCAAAAAGAATCAACCATACTCAGTTCCGGTTCAAGTTCCGTTTCAAGAGGAACCCTCTTCCGTTCCCGTTCCTGTTCCTTTTTGTGGAAACGATGTAACCAAAGGACTTTCAGATTCGGAATTCAAGAATCTAATTCATGATATTTGCAATGAATATTGTGAATCAGATTCCGAAGATGACGATCTTGTTAAGGATCCTTTCAAGAAAGCAAAACGTGATGATGCTAATCTACCTTGTGCTACCACCAAGGACCTCCGTGCGAGGCGAATTTATTCCCCACTTGCCGGCGCCGGCGATTCTGATCGGGAAGTAGCTGAATTAAGGTTTTATGCTCCATCGGTTCTGGAAAATGGCAGTGTGAGGACGGAATCAGCTGAAATTTCTGAATTAGGGTTTGGATCGCCATCAATTGCTGAAAACGGCGATACACCTGTGGATGATGCGAGGATCAAATCTAATAAGATTCTCGACGAGCCTCTGAATTTTGATAGGGGAATCACCAAGCTGTCAGATGAAGATTTGGGCGAAGAATCATTACAAACGACACCACCTAATGATGTCATCTATGTAGGTTTAGAAGCTAGCTGCGATGTGAGGAATGTGGAAGAGGCAGACACACTTGTTGTCAAAGATATGTCTCCTGCTGCTAATGTAGCTGAAAATTCAAGCGAGGGCCGGAAAAATAGCTCTGTTCAAAGGAGTAAATCTGTACTCAAACCGCGTTTACCTTTGAAATTGTTCAAAGCCCCAGGTTCATTCAATTACAAAAGGCTAATGGATGCTATGGGAGATAATTTCGGTATACCGAAATTGGGTCATTGTCATGAAGACAAGAAGGTTATGGGAGGTCAGGGATTGGAACTTCCTTTGACATCTGATAATCATGAAGGTTCTAAGCCTGATAGTTGCACCATGGGTGATACCAATGGGCCAGAACTGGCATCTTCACCAATGCAAGTAGATACCGAGAAAGTGAATGGCGAGTGTTTATCTGTGCCATCTGTGGATGATAAATGCTTGAGTGGATCAAAGGTGGATCTGGCTGCAGATTTTCTGGGTGCTAGAGATGTTGGTAATGCTTTCGACCACGGTGATGTTAAGCAAGATTCTTTCAACAGGAATAATCTTGACTGTGCTAAGGCTGCTGATCACAATGGCTGTGCCTTAGAGCAGCTTGGTGTTTTGAATGAAGATTGTATACCAATGACTCGTGATACTGAAATATGTGATAATATTGTGCTCAATGGAGACCAAATGCAGGGCATACCTCAGAATGTCAAACCTATGGATCTGACCAGAAACACTCAGGAAAGCACTGTTGAAGCGTTATACCCCAAAGCCGATAAGAGAAATAATCCACTCAAGAGAAAACATCCAAAATTGCCATCTTTCCAAGACTCCTCCGAATTGCCAATACAATTTGACGCAAAAGAAATGGCACATGAGTGCTTATCTGCACCCTCTGTTGAGGCTAACTCTGAGAAAACTGTCATCAGTTCTAAAGATGAATGCTTGAGTGAATCAGCGACTGATCCTTGTTCCGTAATGGCGTGTGATAAGATTGTCACAAATGGTGGGTCACCACCCAAAGAACAAAATTTGCTTAATGTCAATAATGATATCTCCAACCTTTCATTTGAGCATCATTCAAGCAATGAGAAAGGATTCACTATCGATTATGATGAAAGAAAGCAGTTTGTGGGTCTGGAGAAGCATGAATCTGTTAGCAGATGTCCTCCTGAAGCTCAGAGTCTAAATCAATTGGATCCTAATATGTTAGATGCTGAAGAGAATGAAACAAGCAGCCATGCAATTTGCAAAAATGACGATGTTGTGGTTTTAAGTCACGTCACCATCTCAAATGAAGAATCTAGTTCACAATCAGAGAAGATTATTTCTGAAAAACCGGCGTTACCAGACACTGCAACACATGGTGGTGGCAAAGCAAAAAGTCTTCTGAATGGCCTAGTTAATGGTTCAAAGATGCCTTCAAAAGGAAGCAATAACAAAAAGGCTAGTTTTGCTGGTGAGATGAAAAATGGTTCCGAATCCAATACTACACCGGTTCTAAATCGCTGCCCACGGGTTAAGTTTTTAAAACATGCTGGGTCTTTGAACTACAAAAGATTGCTTCCGATTTTGTTGGAAAATGAGAAGTCTAATTCCTGTACTTCGAATAATGATCATCGCCCCAAACTTCAGAAGCTTTTGGATCACACACCACTTCTGCCAATTTCAGATTCAAATTTGCAAGTAACTCCTGGAAGTGATTCAAATGATTGTGATCCTATGGGTGATAGTACAGGAAATTCTGGTGCTCAGCAAGAAACAGAGTTGCAAGCTTGTGATTTAAATAGTGATAGTTTAAGCCCAAGATCTCAACTACAAGATAAACAGATTGTGTCAAATAGACCCTACTATCTGGAGAACTCCTTTGTTTCACCAATTTCTGTTCATAGAGATTTACCAGTCACACCTTTAGGTCCTATAGCTGATCAAGTTGTCACTAGAGAAGAAGTGGGTACACCTGCCTTGTCCAACGGGGAGAAATCACCTGAAACACCTGGATGTTGTCGGAGCTTGTCCGAAATGAAAGTCACAGATCAACTTGATGCCCTTGGTGTTAGTTCCCGAAAAGGAATTTTGAGAAAAAACCCAAGAGGATGCAGAGGGCTTTGCACATGTTTGAACTGTGTTTCTTTTCGCCTTCATGCAGAAAGAGCATTTGAATTTTCTAGAAATCAGCTGCTAGATGCCGAAGAGGTTGCCCAAGACCTTATGAAGGAAGTATCCCATCTCAGAAACATGTTGTTTGAAAGATGTACTGATAATGTCAACGACACTCCTCTTTTGGATGGAAGTCAGGTGAAAGAAGCCTGCAGGAAAGCATCTGAAACAGAACAACTTGCAAAGGATCGACTTAGCCAGATGAATGATGATCTTAACATACATTGCAGAACACCTAGTCTGCAGCGACCAAGTGTTAAGTTTTCAGATCGTGTTGAGGAAAAGGTCATTCAACCAAACAGATTAAAAAATGGTTAA
Protein sequence

>Msa0563980

MDVIRNSRKRNVRSPPPASSTFTRSKAHRTRSGQIRSGSSSRSKKNQPYSVPVQVPFQEEPSSVPVPVPFCGNDVTKGLSDSEFKNLIHDICNEYCESDSEDDDLVKDPFKKAKRDDANLPCATTKDLRARRIYSPLAGAGDSDREVAELRFYAPSVLENGSVRTESAEISELGFGSPSIAENGDTPVDDARIKSNKILDEPLNFDRGITKLSDEDLGEESLQTTPPNDVIYVGLEASCDVRNVEEADTLVVKDMSPAANVAENSSEGRKNSSVQRSKSVLKPRLPLKLFKAPGSFNYKRLMDAMGDNFGIPKLGHCHEDKKVMGGQGLELPLTSDNHEGSKPDSCTMGDTNGPELASSPMQVDTEKVNGECLSVPSVDDKCLSGSKVDLAADFLGARDVGNAFDHGDVKQDSFNRNNLDCAKAADHNGCALEQLGVLNEDCIPMTRDTEICDNIVLNGDQMQGIPQNVKPMDLTRNTQESTVEALYPKADKRNNPLKRKHPKLPSFQDSSELPIQFDAKEMAHECLSAPSVEANSEKTVISSKDECLSESATDPCSVMACDKIVTNGGSPPKEQNLLNVNNDISNLSFEHHSSNEKGFTIDYDERKQFVGLEKHESVSRCPPEAQSLNQLDPNMLDAEENETSSHAICKNDDVVVLSHVTISNEESSSQSEKIISEKPALPDTATHGGGKAKSLLNGLVNGSKMPSKGSNNKKASFAGEMKNGSESNTTPVLNRCPRVKFLKHAGSLNYKRLLPILLENEKSNSCTSNNDHRPKLQKLLDHTPLLPISDSNLQVTPGSDSNDCDPMGDSTGNSGAQQETELQACDLNSDSLSPRSQLQDKQIVSNRPYYLENSFVSPISVHRDLPVTPLGPIADQVVTREEVGTPALSNGEKSPETPGCCRSLSEMKVTDQLDALGVSSRKGILRKNPRGCRGLCTCLNCVSFRLHAERAFEFSRNQLLDAEEVAQDLMKEVSHLRNMLFERCTDNVNDTPLLDGSQVKEACRKASETEQLAKDRLSQMNDDLNIHCRTPSLQRPSVKFSDRVEEKVIQPNRLKNG*