Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0785250 | G7J547 | 73.529 | 68 | 7 | 1 | 40 | 96 | 35 | 102 | 3.58e-21 | 97.8 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0785250 | 0.826022 | 3.407224e-54 | -8.615850e-47 |
| Msa0076250 | Msa0785250 | 0.820611 | 6.260045e-53 | -8.615850e-47 |
| Msa0734290 | Msa0785250 | 0.807108 | 5.937252e-50 | -8.615850e-47 |
| Msa0785250 | Msa0816150 | 0.808367 | 3.207399e-50 | -8.615850e-47 |
| Msa0785250 | Msa0853660 | 0.813031 | 3.144490e-51 | -8.615850e-47 |
| Msa0785250 | Msa0858840 | 0.802667 | 5.033309e-49 | -8.615850e-47 |
| Msa0785250 | Msa0880140 | 0.825818 | 3.810037e-54 | -8.615850e-47 |
| Msa0785250 | Msa0964840 | 0.805308 | 1.421007e-49 | -8.615850e-47 |
| Msa0785250 | Msa1346280 | 0.800648 | 1.305749e-48 | -8.615850e-47 |
| Msa0785250 | Msa1374550 | 0.820736 | 5.858605e-53 | -8.615850e-47 |
| Msa0785250 | Msa1438250 | 0.843056 | 1.772062e-58 | -8.615850e-47 |
| Msa0140780 | Msa0785250 | 0.811047 | 8.510829e-51 | -8.615850e-47 |
| Msa0157290 | Msa0785250 | 0.826846 | 2.167561e-54 | -8.615850e-47 |
| Msa0200260 | Msa0785250 | 0.817692 | 2.890979e-52 | -8.615850e-47 |
| Msa0230740 | Msa0785250 | 0.828985 | 6.629308e-55 | -8.615850e-47 |
| Msa0230750 | Msa0785250 | 0.813071 | 3.081938e-51 | -8.615850e-47 |
| Msa0370030 | Msa0785250 | 0.804298 | 2.310582e-49 | -8.615850e-47 |
| Msa0392490 | Msa0785250 | 0.807273 | 5.477998e-50 | -8.615850e-47 |
| Msa0243100 | Msa0785250 | 0.829397 | 5.266025e-55 | -8.615850e-47 |
| Msa0261340 | Msa0785250 | 0.810381 | 1.185612e-50 | -8.615850e-47 |
| Msa0287650 | Msa0785250 | 0.811284 | 7.559534e-51 | -8.615850e-47 |
| Msa0302170 | Msa0785250 | 0.812060 | 5.126444e-51 | -8.615850e-47 |
| Msa0487570 | Msa0785250 | 0.803045 | 4.204107e-49 | -8.615850e-47 |
| Msa0487630 | Msa0785250 | 0.819103 | 1.384186e-52 | -8.615850e-47 |
| Msa0535040 | Msa0785250 | 0.801321 | 9.515002e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0785250 | MtrunA17_Chr3g0133011 | 73.529 | 68 | 7 | 1 | 40 | 96 | 35 | 102 | 6.89e-25 | 97.8 |
| Msa0785250 | MtrunA17_Chr5g0436141 | 94.737 | 38 | 2 | 0 | 1 | 38 | 536 | 573 | 4.39e-17 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 15 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCATACACCATTCACTAAA+TGG | 0.260670 | 5_2:-70150776 | None:intergenic |
| AAGCAAGAGGGATCTTGTTT+AGG | 0.317565 | 5_2:-70150522 | None:intergenic |
| CTTGATAAAACCTGCACAAT+AGG | 0.318408 | 5_2:+70150802 | Msa0785250:CDS |
| AAACAAGATCCCTCTTGCTT+TGG | 0.386522 | 5_2:+70150525 | Msa0785250:CDS |
| AATATTGTGAAGTTCCTTCC+TGG | 0.396931 | 5_2:+70150417 | Msa0785250:CDS |
| CACTTCTATACCTATTGTGC+AGG | 0.401898 | 5_2:-70150812 | None:intergenic |
| AAGAATTACCATTTAGTGAA+TGG | 0.405204 | 5_2:+70150768 | Msa0785250:CDS |
| ATTTGTTTCAGTTTCACCGT+GGG | 0.508909 | 5_2:-70150451 | None:intergenic |
| GTTAACCTAACCAAAGCAAG+AGG | 0.514507 | 5_2:-70150535 | None:intergenic |
| CCGTGGGGTCCTTGAAAACC+AGG | 0.533859 | 5_2:-70150435 | None:intergenic |
| CATTTGTTTCAGTTTCACCG+TGG | 0.597143 | 5_2:-70150452 | None:intergenic |
| GGGGTCCTTGAAAACCAGGA+AGG | 0.666971 | 5_2:-70150431 | None:intergenic |
| TTTGTTTCAGTTTCACCGTG+GGG | 0.677206 | 5_2:-70150450 | None:intergenic |
| TTAACCTAACCAAAGCAAGA+GGG | 0.680843 | 5_2:-70150534 | None:intergenic |
| AAAATAGTAGAACAATTCAG+CGG | 0.707117 | 5_2:-70150481 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATAAATAAATAAACAAA+TGG | - | chr5_2:70148008-70148027 | None:intergenic | 10.0% |
| !!! | TTTTTTAAATTTTGCAAATA+AGG | - | chr5_2:70148848-70148867 | None:intergenic | 10.0% |
| !!! | TTTTTTAAATTTTGCAAATA+AGG | - | chr5_2:70148848-70148867 | None:intergenic | 10.0% |
| !!! | TTTATTTTTGAAATTTCATA+AGG | - | chr5_2:70149998-70150017 | None:intergenic | 10.0% |
| !! | GAAATTTCAAAAATAAAAAA+TGG | + | chr5_2:70150001-70150020 | Msa0785250:intron | 10.0% |
| !! | ATTTAAAAACACAAAAATAA+GGG | - | chr5_2:70150080-70150099 | None:intergenic | 10.0% |
| !! | AATTTAAAAACACAAAAATA+AGG | - | chr5_2:70150081-70150100 | None:intergenic | 10.0% |
| !!! | ATAATTTTTTGTTATTGTTT+TGG | + | chr5_2:70150696-70150715 | Msa0785250:intron | 10.0% |
| !!! | TTTTTTTCTCTTTTTTTCAT+TGG | - | chr5_2:70147881-70147900 | None:intergenic | 15.0% |
| !!! | AAAATTACACATTTTCAAAT+GGG | - | chr5_2:70148430-70148449 | None:intergenic | 15.0% |
| !! | TGTATATTAGTAGAAAAATA+TGG | - | chr5_2:70148470-70148489 | None:intergenic | 15.0% |
| !! | AAAGTATACATTTATGATAA+AGG | + | chr5_2:70148729-70148748 | Msa0785250:intron | 15.0% |
| !! | AAGTATACATTTATGATAAA+GGG | + | chr5_2:70148730-70148749 | Msa0785250:intron | 15.0% |
| !!! | AAAGTTTAAAGTATACAATT+TGG | + | chr5_2:70148766-70148785 | Msa0785250:intron | 15.0% |
| !! | TGAAATGATTAAAAACTTAT+AGG | + | chr5_2:70148797-70148816 | Msa0785250:intron | 15.0% |
| !!! | TTTTCAAAATTTGAAAAGAA+TGG | + | chr5_2:70148822-70148841 | Msa0785250:intron | 15.0% |
| !!! | TACCTCATAATTTTTTAAAT+TGG | + | chr5_2:70150025-70150044 | Msa0785250:intron | 15.0% |
| !! | AACCAATTTAAAAAATTATG+AGG | - | chr5_2:70150030-70150049 | None:intergenic | 15.0% |
| !!! | GTGAATTAAATTTAGAATTT+GGG | + | chr5_2:70150670-70150689 | Msa0785250:intron | 15.0% |
| !! | AAATATTGTTGAAATCTGAA+AGG | + | chr5_2:70147898-70147917 | Msa0785250:intron | 20.0% |
| !! | AATAAATAAACAAATGGTTC+TGG | - | chr5_2:70148002-70148021 | None:intergenic | 20.0% |
| !! | TGATATATATTCAAAATCCA+CGG | + | chr5_2:70148167-70148186 | Msa0785250:intron | 20.0% |
| !!! | TTAGTGTATGTTTTATATCA+CGG | - | chr5_2:70148237-70148256 | None:intergenic | 20.0% |
| !!! | TAAGTTCTTGTTTGATATTA+CGG | - | chr5_2:70148340-70148359 | None:intergenic | 20.0% |
| !!! | CAAAATTACACATTTTCAAA+TGG | - | chr5_2:70148431-70148450 | None:intergenic | 20.0% |
| !!! | AAAATTATGCATTGGTAATA+AGG | + | chr5_2:70148599-70148618 | Msa0785250:intron | 20.0% |
| !!! | TGGACTATTTGTATAAATTT+TGG | + | chr5_2:70148702-70148721 | Msa0785250:intron | 20.0% |
| !!! | GGACTATTTGTATAAATTTT+GGG | + | chr5_2:70148703-70148722 | Msa0785250:intron | 20.0% |
| !!! | GACTATTTGTATAAATTTTG+GGG | + | chr5_2:70148704-70148723 | Msa0785250:intron | 20.0% |
| !! | TATGTGTAAATTGAAAAGAA+TGG | + | chr5_2:70148881-70148900 | Msa0785250:intron | 20.0% |
| !! | AGCTCAAGAATTATAATAAT+TGG | - | chr5_2:70149003-70149022 | None:intergenic | 20.0% |
| !! | TACTCTTAAGTTTAATCTAA+CGG | - | chr5_2:70149224-70149243 | None:intergenic | 20.0% |
| !!! | TATTTTTGATGATTCTTTGA+TGG | + | chr5_2:70149548-70149567 | Msa0785250:intron | 20.0% |
| !!! | GTTTTACTAGAATTGATTTA+GGG | - | chr5_2:70149933-70149952 | None:intergenic | 20.0% |
| !!! | TGTTTTACTAGAATTGATTT+AGG | - | chr5_2:70149934-70149953 | None:intergenic | 20.0% |
| !! | AAAATTTAAATCTTGCAAGT+TGG | + | chr5_2:70150053-70150072 | Msa0785250:intron | 20.0% |
| !!! | TCTCATCTTTTTTTTTTTTG+TGG | + | chr5_2:70150105-70150124 | Msa0785250:intron | 20.0% |
| !! | TAACTAATACATAATTCGTT+GGG | - | chr5_2:70150647-70150666 | None:intergenic | 20.0% |
| !! | ATAACTAATACATAATTCGT+TGG | - | chr5_2:70150648-70150667 | None:intergenic | 20.0% |
| !! | ACGAATTATGTATTAGTTAT+AGG | + | chr5_2:70150648-70150667 | Msa0785250:intron | 20.0% |
| !!! | GGTGAATTAAATTTAGAATT+TGG | + | chr5_2:70150669-70150688 | Msa0785250:intron | 20.0% |
| !!! | AGTTTCATGTTTGATTTATA+AGG | + | chr5_2:70150727-70150746 | Msa0785250:intron | 20.0% |
| ! | TAAAATCAATATGAATCACC+AGG | - | chr5_2:70148205-70148224 | None:intergenic | 25.0% |
| ! | GAGTACAAAGTTATAAATGA+AGG | - | chr5_2:70148386-70148405 | None:intergenic | 25.0% |
| ! | AAATATGGTCAAAGTAAGTT+AGG | - | chr5_2:70148455-70148474 | None:intergenic | 25.0% |
| ! | TTAAGCTCAAAATTATGCAT+TGG | + | chr5_2:70148591-70148610 | Msa0785250:intron | 25.0% |
| ! | TCTCAATAGTTAAACTTTGT+TGG | + | chr5_2:70148682-70148701 | Msa0785250:intron | 25.0% |
| ! | TATACATTTATGATAAAGGG+CGG | + | chr5_2:70148733-70148752 | Msa0785250:intron | 25.0% |
| !! | GTTTAAAGTATACAATTTGG+TGG | + | chr5_2:70148769-70148788 | Msa0785250:intron | 25.0% |
| !!! | AGCTTTTAACTAAAGAAAGT+AGG | + | chr5_2:70149019-70149038 | Msa0785250:intron | 25.0% |
| !!! | GCTTTTAACTAAAGAAAGTA+GGG | + | chr5_2:70149020-70149039 | Msa0785250:intron | 25.0% |
| ! | GAAGAAAAATAAGTTCTCTT+TGG | + | chr5_2:70149057-70149076 | Msa0785250:intron | 25.0% |
| ! | AGAAAAGAGGAAAAACATAT+TGG | - | chr5_2:70149292-70149311 | None:intergenic | 25.0% |
| !!! | GAAGAGAAAAGTTTTTGTTT+TGG | + | chr5_2:70149379-70149398 | Msa0785250:intron | 25.0% |
| !! | TTCGTAACTAAAGACATTTT+AGG | - | chr5_2:70149411-70149430 | None:intergenic | 25.0% |
| ! | CAAGGAAAGAAATAACATTT+AGG | - | chr5_2:70149600-70149619 | None:intergenic | 25.0% |
| !!! | CATCTTTTTTTTTTTTGTGG+TGG | + | chr5_2:70150108-70150127 | Msa0785250:intron | 25.0% |
| ! | AAAAAATCATGGTTTCTCTT+TGG | + | chr5_2:70150203-70150222 | Msa0785250:intron | 25.0% |
| ! | AAAATAGTAGAACAATTCAG+CGG | - | chr5_2:70150484-70150503 | None:intergenic | 25.0% |
| ! | GTAGTTATTACCTATTTCAA+AGG | - | chr5_2:70150596-70150615 | None:intergenic | 25.0% |
| ! | AAGAATTACCATTTAGTGAA+TGG | + | chr5_2:70150768-70150787 | Msa0785250:CDS | 25.0% |
| !!! | TCATTTTGACTTGCTTTTCA+TGG | - | chr5_2:70147798-70147817 | None:intergenic | 30.0% |
| AATCTTCCTGCTAATACAAA+TGG | - | chr5_2:70147938-70147957 | None:intergenic | 30.0% | |
| ATTTAAGAGAGTGAGTTCAA+TGG | + | chr5_2:70147966-70147985 | Msa0785250:intron | 30.0% | |
| TCTTAATATTGTCCCATTGA+AGG | + | chr5_2:70148036-70148055 | Msa0785250:intron | 30.0% | |
| ATTTCCAATTGTCCTTCAAT+GGG | - | chr5_2:70148051-70148070 | None:intergenic | 30.0% | |
| TATTTCCAATTGTCCTTCAA+TGG | - | chr5_2:70148052-70148071 | None:intergenic | 30.0% | |
| ! | AATATGAATCACCAGGATTT+TGG | - | chr5_2:70148198-70148217 | None:intergenic | 30.0% |
| TCAACTGTGTCAAGTATTAA+AGG | + | chr5_2:70148622-70148641 | Msa0785250:intron | 30.0% | |
| !!! | GAGGGAGTATTTTATTTTGA+TGG | + | chr5_2:70148648-70148667 | Msa0785250:intron | 30.0% |
| AGAGAAGATTGAAAATCTGA+CGG | + | chr5_2:70149107-70149126 | Msa0785250:intron | 30.0% | |
| CAACAACATATGTTCAAATG+TGG | - | chr5_2:70149187-70149206 | None:intergenic | 30.0% | |
| TTAAGTTTAATCTAACGGCT+AGG | - | chr5_2:70149219-70149238 | None:intergenic | 30.0% | |
| TTTACTATAATCGCACATGT+TGG | - | chr5_2:70149864-70149883 | None:intergenic | 30.0% | |
| ! | GTTTTACTAAAGATCCCAAT+CGG | - | chr5_2:70149894-70149913 | None:intergenic | 30.0% |
| TTAGTAAAACACACCACAAT+TGG | + | chr5_2:70149904-70149923 | Msa0785250:intron | 30.0% | |
| TAGTAAAACACACCACAATT+GGG | + | chr5_2:70149905-70149924 | Msa0785250:intron | 30.0% | |
| TTCTAGTAAAACAAGACAAC+TGG | + | chr5_2:70149941-70149960 | Msa0785250:intron | 30.0% | |
| TAAAACAAGACAACTGGAAT+TGG | + | chr5_2:70149947-70149966 | Msa0785250:intron | 30.0% | |
| CATTTCTTGTAGTGTATGTA+AGG | - | chr5_2:70150153-70150172 | None:intergenic | 30.0% | |
| AATGCCAGGAAAAAAAATCA+TGG | + | chr5_2:70150192-70150211 | Msa0785250:intron | 30.0% | |
| !!! | GAAACCATGATTTTTTTTCC+TGG | - | chr5_2:70150199-70150218 | None:intergenic | 30.0% |
| GATTTGTGTTCGAAAAGTTA+GGG | + | chr5_2:70150257-70150276 | Msa0785250:intron | 30.0% | |
| ATTGAGATGTTGCAAAAACA+AGG | - | chr5_2:70150395-70150414 | None:intergenic | 30.0% | |
| TATTACCTATTTCAAAGGCA+AGG | - | chr5_2:70150591-70150610 | None:intergenic | 30.0% | |
| ! | TGTTCTGTTCTTTTGCAACT+TGG | - | chr5_2:70147749-70147768 | None:intergenic | 35.0% |
| TGAGAACCATTTGTATTAGC+AGG | + | chr5_2:70147929-70147948 | Msa0785250:intron | 35.0% | |
| !! | CACAACTGTTGCTATTTCTA+GGG | - | chr5_2:70148078-70148097 | None:intergenic | 35.0% |
| !! | ACACAACTGTTGCTATTTCT+AGG | - | chr5_2:70148079-70148098 | None:intergenic | 35.0% |
| AACAGTTGTGTGTTTGTGAA+AGG | + | chr5_2:70148088-70148107 | Msa0785250:intron | 35.0% | |
| ! | GTGTATGTTTTATATCACGG+AGG | - | chr5_2:70148234-70148253 | None:intergenic | 35.0% |
| ! | GTTCTTGTTTGATATTACGG+TGG | - | chr5_2:70148337-70148356 | None:intergenic | 35.0% |
| TTCAAATGGGTCATCTATTG+CGG | - | chr5_2:70148417-70148436 | None:intergenic | 35.0% | |
| TGTCAAGTATTAAAGGACAG+AGG | + | chr5_2:70148629-70148648 | Msa0785250:intron | 35.0% | |
| GTCAAGTATTAAAGGACAGA+GGG | + | chr5_2:70148630-70148649 | Msa0785250:intron | 35.0% | |
| ! | GTCAGATTTTCAATCTTCTC+TGG | - | chr5_2:70149108-70149127 | None:intergenic | 35.0% |
| GAGAAGATTGAAAATCTGAC+GGG | + | chr5_2:70149108-70149127 | Msa0785250:intron | 35.0% | |
| AGAAGATTGAAAATCTGACG+GGG | + | chr5_2:70149109-70149128 | Msa0785250:intron | 35.0% | |
| ACGTAAAGAGTTAGAAGAGT+TGG | - | chr5_2:70149143-70149162 | None:intergenic | 35.0% | |
| TATTGGCATGAGAATGATGA+AGG | - | chr5_2:70149275-70149294 | None:intergenic | 35.0% | |
| TAAGCTAGAAGTGAGAAAAG+AGG | - | chr5_2:70149305-70149324 | None:intergenic | 35.0% | |
| TTAGTTACGAACATTGCTTG+TGG | + | chr5_2:70149420-70149439 | Msa0785250:intron | 35.0% | |
| TAGTTACGAACATTGCTTGT+GGG | + | chr5_2:70149421-70149440 | Msa0785250:intron | 35.0% | |
| CACACGAATACATTGAATAC+TGG | - | chr5_2:70149632-70149651 | None:intergenic | 35.0% | |
| TCAATGTATTCGTGTGATCA+AGG | + | chr5_2:70149636-70149655 | Msa0785250:intron | 35.0% | |
| TGTACAATACACCAAATGGT+GGG | - | chr5_2:70149701-70149720 | None:intergenic | 35.0% | |
| ! | TTTGTTGTCATGTGACTGAA+AGG | - | chr5_2:70149794-70149813 | None:intergenic | 35.0% |
| ATAGTAAAACAGACTCCGAT+TGG | + | chr5_2:70149876-70149895 | Msa0785250:intron | 35.0% | |
| TAGTAAAACAGACTCCGATT+GGG | + | chr5_2:70149877-70149896 | Msa0785250:intron | 35.0% | |
| ! | TTTTTCCTGGCATTATTCTC+TGG | - | chr5_2:70150186-70150205 | None:intergenic | 35.0% |
| AATCCATACATCAGTTGACT+TGG | + | chr5_2:70150235-70150254 | Msa0785250:intron | 35.0% | |
| AATCCAAGTCAACTGATGTA+TGG | - | chr5_2:70150241-70150260 | None:intergenic | 35.0% | |
| GGATTTGTGTTCGAAAAGTT+AGG | + | chr5_2:70150256-70150275 | Msa0785250:intron | 35.0% | |
| GAAAAGTTAGGGTAATGCTT+AGG | + | chr5_2:70150268-70150287 | Msa0785250:intron | 35.0% | |
| AGATGTTGCAAAAACAAGGT+TGG | - | chr5_2:70150391-70150410 | None:intergenic | 35.0% | |
| AATATTGTGAAGTTCCTTCC+TGG | + | chr5_2:70150417-70150436 | Msa0785250:CDS | 35.0% | |
| ATTTGTTTCAGTTTCACCGT+GGG | - | chr5_2:70150454-70150473 | None:intergenic | 35.0% | |
| TTAACCTAACCAAAGCAAGA+GGG | - | chr5_2:70150537-70150556 | None:intergenic | 35.0% | |
| ATAATTCGTTGGGAAACAAC+GGG | - | chr5_2:70150637-70150656 | None:intergenic | 35.0% | |
| CATAATTCGTTGGGAAACAA+CGG | - | chr5_2:70150638-70150657 | None:intergenic | 35.0% | |
| GTCATACACCATTCACTAAA+TGG | - | chr5_2:70150779-70150798 | None:intergenic | 35.0% | |
| GCAAGTCAAAATGATGTGTG+AGG | + | chr5_2:70147804-70147823 | Msa0785250:intron | 40.0% | |
| TTGTCCCATTGAAGGACAAT+TGG | + | chr5_2:70148044-70148063 | Msa0785250:intron | 40.0% | |
| GTGTGTTTGTGAAAGGAGTA+AGG | + | chr5_2:70148095-70148114 | Msa0785250:intron | 40.0% | |
| TCAAATGGGTCATCTATTGC+GGG | - | chr5_2:70148416-70148435 | None:intergenic | 40.0% | |
| AGTTAGAAGAGTTGGACTGT+GGG | - | chr5_2:70149135-70149154 | None:intergenic | 40.0% | |
| AGTTACGAACATTGCTTGTG+GGG | + | chr5_2:70149422-70149441 | Msa0785250:intron | 40.0% | |
| GTGTACAATACACCAAATGG+TGG | - | chr5_2:70149702-70149721 | None:intergenic | 40.0% | |
| GCTGTGTACAATACACCAAA+TGG | - | chr5_2:70149705-70149724 | None:intergenic | 40.0% | |
| CTCTTGTGTAAAACAGGGTA+AGG | - | chr5_2:70149727-70149746 | None:intergenic | 40.0% | |
| ! | CTTACCCTGTTTTACACAAG+AGG | + | chr5_2:70149725-70149744 | Msa0785250:intron | 40.0% |
| ACAGCCTCTTGTGTAAAACA+GGG | - | chr5_2:70149732-70149751 | None:intergenic | 40.0% | |
| AACAGCCTCTTGTGTAAAAC+AGG | - | chr5_2:70149733-70149752 | None:intergenic | 40.0% | |
| TGATTTAGGGATCCCAATTG+TGG | - | chr5_2:70149920-70149939 | None:intergenic | 40.0% | |
| TTGTAGTGTATGTAAGGTCC+GGG | - | chr5_2:70150147-70150166 | None:intergenic | 40.0% | |
| CTTGTAGTGTATGTAAGGTC+CGG | - | chr5_2:70150148-70150167 | None:intergenic | 40.0% | |
| TATTGCCAGAGAATAATGCC+AGG | + | chr5_2:70150178-70150197 | Msa0785250:intron | 40.0% | |
| AATCATGGTTTCTCTTTGGC+TGG | + | chr5_2:70150207-70150226 | Msa0785250:intron | 40.0% | |
| ATCATGGTTTCTCTTTGGCT+GGG | + | chr5_2:70150208-70150227 | Msa0785250:intron | 40.0% | |
| AGGCTTAGTTCACATCATAG+TGG | + | chr5_2:70150288-70150307 | Msa0785250:intron | 40.0% | |
| TGTTGCAAAAACAAGGTTGG+TGG | - | chr5_2:70150388-70150407 | None:intergenic | 40.0% | |
| !! | AAGTTCCTTCCTGGTTTTCA+AGG | + | chr5_2:70150426-70150445 | Msa0785250:CDS | 40.0% |
| TTTGTTTCAGTTTCACCGTG+GGG | - | chr5_2:70150453-70150472 | None:intergenic | 40.0% | |
| CATTTGTTTCAGTTTCACCG+TGG | - | chr5_2:70150455-70150474 | None:intergenic | 40.0% | |
| ! | AAGCAAGAGGGATCTTGTTT+AGG | - | chr5_2:70150525-70150544 | None:intergenic | 40.0% |
| AAACAAGATCCCTCTTGCTT+TGG | + | chr5_2:70150525-70150544 | Msa0785250:CDS | 40.0% | |
| GTTAACCTAACCAAAGCAAG+AGG | - | chr5_2:70150538-70150557 | None:intergenic | 40.0% | |
| !! | TATGGCCTTGCCTTTGAAAT+AGG | + | chr5_2:70150583-70150602 | Msa0785250:intron | 40.0% |
| GAGTTAGAAGAGTTGGACTG+TGG | - | chr5_2:70149136-70149155 | None:intergenic | 45.0% | |
| ! | GAATACTGGTAGTGCTAGCA+AGG | - | chr5_2:70149618-70149637 | None:intergenic | 45.0% |
| TGTAGTGTATGTAAGGTCCG+GGG | - | chr5_2:70150146-70150165 | None:intergenic | 45.0% | |
| AGATCCCTCTTGCTTTGGTT+AGG | + | chr5_2:70150530-70150549 | Msa0785250:intron | 45.0% | |
| CCATAGAAAGCAGAGCAATC+GGG | - | chr5_2:70150568-70150587 | None:intergenic | 45.0% | |
| GCCATAGAAAGCAGAGCAAT+CGG | - | chr5_2:70150569-70150588 | None:intergenic | 45.0% | |
| !!! | ACATATATTTAAAATTTTAT+TGG | - | chr5_2:70149975-70149994 | None:intergenic | 5.0% |
| !! | CCAGGATTTTGGTAGATCCG+TGG | - | chr5_2:70148187-70148206 | None:intergenic | 50.0% |
| CCACGGATCTACCAAAATCC+TGG | + | chr5_2:70148184-70148203 | Msa0785250:intron | 50.0% | |
| ATGGGTCATCTATTGCGGGA+CGG | - | chr5_2:70148412-70148431 | None:intergenic | 50.0% | |
| TTCCCAAACCCTGCATATGC+GGG | - | chr5_2:70149673-70149692 | None:intergenic | 50.0% | |
| CTTCCCAAACCCTGCATATG+CGG | - | chr5_2:70149674-70149693 | None:intergenic | 50.0% | |
| GCATATGCAGGGTTTGGGAA+GGG | + | chr5_2:70149673-70149692 | Msa0785250:intron | 50.0% | |
| CATATGCAGGGTTTGGGAAG+GGG | + | chr5_2:70149674-70149693 | Msa0785250:intron | 50.0% | |
| GGTGGTCAGTATTTGAACCC+CGG | + | chr5_2:70150126-70150145 | Msa0785250:intron | 50.0% | |
| CCCGATTGCTCTGCTTTCTA+TGG | + | chr5_2:70150565-70150584 | Msa0785250:intron | 50.0% | |
| GTCATCTATTGCGGGACGGA+GGG | - | chr5_2:70148408-70148427 | None:intergenic | 55.0% | |
| ACTAGAGCTCCCGCATATGC+AGG | + | chr5_2:70149661-70149680 | Msa0785250:intron | 55.0% | |
| CTAGAGCTCCCGCATATGCA+GGG | + | chr5_2:70149662-70149681 | Msa0785250:intron | 55.0% | |
| CTCCCGCATATGCAGGGTTT+GGG | + | chr5_2:70149668-70149687 | Msa0785250:intron | 55.0% | |
| CGCATATGCAGGGTTTGGGA+AGG | + | chr5_2:70149672-70149691 | Msa0785250:intron | 55.0% | |
| GGGGTCCTTGAAAACCAGGA+AGG | - | chr5_2:70150434-70150453 | None:intergenic | 55.0% | |
| !! | CCTGGTTTTCAAGGACCCCA+CGG | + | chr5_2:70150435-70150454 | Msa0785250:CDS | 55.0% |
| GGTCATCTATTGCGGGACGG+AGG | - | chr5_2:70148409-70148428 | None:intergenic | 60.0% | |
| GCTCCCGCATATGCAGGGTT+TGG | + | chr5_2:70149667-70149686 | Msa0785250:intron | 60.0% | |
| TGGGAAGGGGTCCCACCATT+TGG | + | chr5_2:70149687-70149706 | Msa0785250:intron | 60.0% | |
| CCGTGGGGTCCTTGAAAACC+AGG | - | chr5_2:70150438-70150457 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 70147692 | 70150823 | 70147692 | ID=Msa0785250;Name=Msa0785250 |
| chr5_2 | mRNA | 70147692 | 70150823 | 70147692 | ID=Msa0785250-mRNA-1;Parent=Msa0785250;Name=Msa0785250-mRNA-1;_AED=0.82;_eAED=0.82;_QI=0|0|0|0.25|0|0|4|0|124 |
| chr5_2 | exon | 70147692 | 70147807 | 70147692 | ID=Msa0785250-mRNA-1:exon:21144;Parent=Msa0785250-mRNA-1 |
| chr5_2 | exon | 70150365 | 70150546 | 70150365 | ID=Msa0785250-mRNA-1:exon:21145;Parent=Msa0785250-mRNA-1 |
| chr5_2 | exon | 70150727 | 70150734 | 70150727 | ID=Msa0785250-mRNA-1:exon:21146;Parent=Msa0785250-mRNA-1 |
| chr5_2 | exon | 70150755 | 70150823 | 70150755 | ID=Msa0785250-mRNA-1:exon:21147;Parent=Msa0785250-mRNA-1 |
| chr5_2 | CDS | 70147692 | 70147807 | 70147692 | ID=Msa0785250-mRNA-1:cds;Parent=Msa0785250-mRNA-1 |
| chr5_2 | CDS | 70150365 | 70150546 | 70150365 | ID=Msa0785250-mRNA-1:cds;Parent=Msa0785250-mRNA-1 |
| chr5_2 | CDS | 70150727 | 70150734 | 70150727 | ID=Msa0785250-mRNA-1:cds;Parent=Msa0785250-mRNA-1 |
| chr5_2 | CDS | 70150755 | 70150823 | 70150755 | ID=Msa0785250-mRNA-1:cds;Parent=Msa0785250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
