Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1218960 | XP_003609812.1 | 93.220 | 177 | 8 | 1 | 1 | 177 | 1 | 173 | 9.61e-114 | 330 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1218960 | sp|F4HWQ8|CVIF1_ARATH | 46.479 | 142 | 76 | 0 | 32 | 173 | 21 | 162 | 2.08e-42 | 143 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0002540 | Msa1218960 | 0.819473 | 1.140498e-52 | -8.615850e-47 |
Msa0008340 | Msa1218960 | 0.823170 | 1.599898e-53 | -8.615850e-47 |
Msa0008410 | Msa1218960 | 0.812541 | 4.025764e-51 | -8.615850e-47 |
Msa0015300 | Msa1218960 | 0.811322 | 7.418176e-51 | -8.615850e-47 |
Msa0041970 | Msa1218960 | 0.815461 | 9.137986e-52 | -8.615850e-47 |
Msa0044710 | Msa1218960 | 0.801401 | 9.161506e-49 | -8.615850e-47 |
Msa0047980 | Msa1218960 | 0.810703 | 1.010380e-50 | -8.615850e-47 |
Msa0050730 | Msa1218960 | 0.814385 | 1.582771e-51 | -8.615850e-47 |
Msa0050760 | Msa1218960 | 0.818549 | 1.849722e-52 | -8.615850e-47 |
Msa0064350 | Msa1218960 | 0.842137 | 3.106041e-58 | -8.615850e-47 |
Msa0094920 | Msa1218960 | 0.807045 | 6.121503e-50 | -8.615850e-47 |
Msa0105420 | Msa1218960 | 0.825808 | 3.829280e-54 | -8.615850e-47 |
Msa0610590 | Msa1218960 | 0.825292 | 5.076612e-54 | -8.615850e-47 |
Msa0616020 | Msa1218960 | 0.805486 | 1.304359e-49 | -8.615850e-47 |
Msa0651190 | Msa1218960 | 0.815058 | 1.123013e-51 | -8.615850e-47 |
Msa0663900 | Msa1218960 | 0.814275 | 1.673611e-51 | -8.615850e-47 |
Msa0663920 | Msa1218960 | 0.802942 | 4.415178e-49 | -8.615850e-47 |
Msa0669850 | Msa1218960 | 0.810205 | 1.293809e-50 | -8.615850e-47 |
Msa0680240 | Msa1218960 | 0.827681 | 1.367703e-54 | -8.615850e-47 |
Msa0684500 | Msa1218960 | 0.813584 | 2.377645e-51 | -8.615850e-47 |
Msa0687630 | Msa1218960 | 0.811095 | 8.307989e-51 | -8.615850e-47 |
Msa0690160 | Msa1218960 | 0.840770 | 7.118328e-58 | -8.615850e-47 |
Msa0694250 | Msa1218960 | 0.810825 | 9.505389e-51 | -8.615850e-47 |
Msa0713820 | Msa1218960 | 0.829809 | 4.182241e-55 | -8.615850e-47 |
Msa0743260 | Msa1218960 | 0.808048 | 3.750234e-50 | -8.615850e-47 |
Msa0756060 | Msa1218960 | 0.809321 | 2.004689e-50 | -8.615850e-47 |
Msa0791100 | Msa1218960 | 0.810322 | 1.220780e-50 | -8.615850e-47 |
Msa0792090 | Msa1218960 | 0.800351 | 1.501131e-48 | -8.615850e-47 |
Msa0797750 | Msa1218960 | 0.826276 | 2.965362e-54 | -8.615850e-47 |
Msa0835280 | Msa1218960 | 0.818881 | 1.555518e-52 | -8.615850e-47 |
Msa0837660 | Msa1218960 | 0.829356 | 5.387998e-55 | -8.615850e-47 |
Msa0129060 | Msa1218960 | 0.807795 | 4.246006e-50 | -8.615850e-47 |
Msa0143080 | Msa1218960 | 0.802710 | 4.929552e-49 | -8.615850e-47 |
Msa0148100 | Msa1218960 | 0.814299 | 1.653691e-51 | -8.615850e-47 |
Msa0149390 | Msa1218960 | 0.807369 | 5.227425e-50 | -8.615850e-47 |
Msa0184020 | Msa1218960 | 0.809000 | 2.348863e-50 | -8.615850e-47 |
Msa0185480 | Msa1218960 | 0.822431 | 2.377806e-53 | -8.615850e-47 |
Msa0188630 | Msa1218960 | 0.824620 | 7.314181e-54 | -8.615850e-47 |
Msa0191050 | Msa1218960 | 0.809113 | 2.221277e-50 | -8.615850e-47 |
Msa0204980 | Msa1218960 | 0.805961 | 1.036812e-49 | -8.615850e-47 |
Msa0205850 | Msa1218960 | 0.811447 | 6.970494e-51 | -8.615850e-47 |
Msa0230770 | Msa1218960 | 0.809400 | 1.928429e-50 | -8.615850e-47 |
Msa0233350 | Msa1218960 | 0.814582 | 1.431527e-51 | -8.615850e-47 |
Msa0236980 | Msa1218960 | 0.804948 | 1.690531e-49 | -8.615850e-47 |
Msa0376040 | Msa1218960 | 0.816242 | 6.117735e-52 | -8.615850e-47 |
Msa0376690 | Msa1218960 | 0.800712 | 1.267544e-48 | -8.615850e-47 |
Msa0380040 | Msa1218960 | 0.804167 | 2.460207e-49 | -8.615850e-47 |
Msa0392940 | Msa1218960 | 0.807350 | 5.276927e-50 | -8.615850e-47 |
Msa0393710 | Msa1218960 | 0.802818 | 4.682969e-49 | -8.615850e-47 |
Msa0426330 | Msa1218960 | 0.829374 | 5.335872e-55 | -8.615850e-47 |
Msa0449830 | Msa1218960 | 0.838293 | 3.133998e-57 | -8.615850e-47 |
Msa0993530 | Msa1218960 | 0.802922 | 4.457288e-49 | -8.615850e-47 |
Msa0996080 | Msa1218960 | 0.808809 | 2.579964e-50 | -8.615850e-47 |
Msa0999040 | Msa1218960 | 0.801696 | 7.972397e-49 | -8.615850e-47 |
Msa1089840 | Msa1218960 | 0.803087 | 4.121096e-49 | -8.615850e-47 |
Msa1097840 | Msa1218960 | 0.819332 | 1.227560e-52 | -8.615850e-47 |
Msa0260210 | Msa1218960 | 0.803987 | 2.681967e-49 | -8.615850e-47 |
Msa0282250 | Msa1218960 | 0.803523 | 3.347004e-49 | -8.615850e-47 |
Msa0296760 | Msa1218960 | 0.812678 | 3.757848e-51 | -8.615850e-47 |
Msa0304290 | Msa1218960 | 0.806135 | 9.529281e-50 | -8.615850e-47 |
Msa0304330 | Msa1218960 | 0.805316 | 1.416135e-49 | -8.615850e-47 |
Msa0311700 | Msa1218960 | 0.835166 | 1.965780e-56 | -8.615850e-47 |
Msa0316850 | Msa1218960 | 0.813124 | 2.999353e-51 | -8.615850e-47 |
Msa0328210 | Msa1218960 | 0.820354 | 7.169428e-53 | -8.615850e-47 |
Msa0343810 | Msa1218960 | 0.993778 | 3.713399e-202 | -8.615850e-47 |
Msa0355270 | Msa1218960 | 0.803109 | 4.077124e-49 | -8.615850e-47 |
Msa0356960 | Msa1218960 | 0.807239 | 5.570871e-50 | -8.615850e-47 |
Msa1111180 | Msa1218960 | 0.800830 | 1.198932e-48 | -8.615850e-47 |
Msa1143840 | Msa1218960 | 0.802239 | 6.164086e-49 | -8.615850e-47 |
Msa1165870 | Msa1218960 | 0.802307 | 5.970233e-49 | -8.615850e-47 |
Msa1188910 | Msa1218960 | 0.803699 | 3.077931e-49 | -8.615850e-47 |
Msa1199560 | Msa1218960 | 0.812434 | 4.248121e-51 | -8.615850e-47 |
Msa1201120 | Msa1218960 | 0.812305 | 4.531633e-51 | -8.615850e-47 |
Msa1217830 | Msa1218960 | 0.807404 | 5.139474e-50 | -8.615850e-47 |
Msa1218960 | Msa1233890 | 0.802617 | 5.153159e-49 | -8.615850e-47 |
Msa1218960 | Msa1267260 | 0.803100 | 4.095912e-49 | -8.615850e-47 |
Msa1218960 | Msa1269300 | 0.803334 | 3.663239e-49 | -8.615850e-47 |
Msa1218960 | Msa1282920 | 0.826276 | 2.965234e-54 | -8.615850e-47 |
Msa1218960 | Msa1304820 | 0.815563 | 8.671105e-52 | -8.615850e-47 |
Msa1218960 | Msa1328700 | 0.808878 | 2.493941e-50 | -8.615850e-47 |
Msa1218960 | Msa1340020 | 0.819662 | 1.032569e-52 | -8.615850e-47 |
Msa1218960 | Msa1343820 | 0.841706 | 4.037499e-58 | -8.615850e-47 |
Msa1218960 | Msa1365150 | 0.811273 | 7.603755e-51 | -8.615850e-47 |
Msa1218960 | Msa1367880 | 0.812867 | 3.415284e-51 | -8.615850e-47 |
Msa1218960 | Msa1368210 | 0.800707 | 1.270293e-48 | -8.615850e-47 |
Msa1218960 | Msa1372580 | 0.806721 | 7.168603e-50 | -8.615850e-47 |
Msa1218960 | Msa1404010 | 0.817614 | 3.009407e-52 | -8.615850e-47 |
Msa1218960 | Msa1404190 | 0.806967 | 6.360187e-50 | -8.615850e-47 |
Msa1218960 | Msa1404730 | 0.804348 | 2.255906e-49 | -8.615850e-47 |
Msa1218960 | Msa1423450 | 0.812479 | 4.152665e-51 | -8.615850e-47 |
Msa1218960 | Msa1439960 | 0.801697 | 7.965942e-49 | -8.615850e-47 |
Msa1218960 | Msa1440000 | 0.804715 | 1.890681e-49 | -8.615850e-47 |
Msa1218960 | Msa1440600 | 0.818933 | 1.513656e-52 | -8.615850e-47 |
Msa1218960 | Msa1448510 | 0.813881 | 2.045175e-51 | -8.615850e-47 |
Msa1218960 | Msa1452470 | 0.806697 | 7.252100e-50 | -8.615850e-47 |
Msa1218960 | Msa1453080 | 0.812608 | 3.892357e-51 | -8.615850e-47 |
Msa1218960 | Msa1461280 | 0.814867 | 1.237947e-51 | -8.615850e-47 |
Msa0516040 | Msa1218960 | 0.810044 | 1.401876e-50 | -8.615850e-47 |
Msa0535450 | Msa1218960 | 0.803942 | 2.739580e-49 | -8.615850e-47 |
Msa0551950 | Msa1218960 | 0.813493 | 2.489728e-51 | -8.615850e-47 |
Msa0552810 | Msa1218960 | 0.803245 | 3.822982e-49 | -8.615850e-47 |
Msa0578970 | Msa1218960 | 0.816168 | 6.355264e-52 | -8.615850e-47 |
Msa0585900 | Msa1218960 | 0.833316 | 5.721335e-56 | -8.615850e-47 |
Msa0585960 | Msa1218960 | 0.801048 | 1.082210e-48 | -8.615850e-47 |
Msa0587690 | Msa1218960 | 0.801827 | 7.491244e-49 | -8.615850e-47 |
Msa0591770 | Msa1218960 | 0.807354 | 5.267340e-50 | -8.615850e-47 |
Msa0863870 | Msa1218960 | 0.803129 | 4.040107e-49 | -8.615850e-47 |
Msa0877410 | Msa1218960 | 0.808382 | 3.183999e-50 | -8.615850e-47 |
Msa0891600 | Msa1218960 | -0.800271 | 1.558814e-48 | -8.615850e-47 |
Msa0899230 | Msa1218960 | 0.814962 | 1.179288e-51 | -8.615850e-47 |
Msa0900630 | Msa1218960 | 0.802126 | 6.504893e-49 | -8.615850e-47 |
Msa0908170 | Msa1218960 | 0.812064 | 5.116474e-51 | -8.615850e-47 |
Msa0910980 | Msa1218960 | -0.810880 | 9.248162e-51 | -8.615850e-47 |
Msa0922540 | Msa1218960 | 0.800596 | 1.338008e-48 | -8.615850e-47 |
Msa0927670 | Msa1218960 | 0.808506 | 2.995262e-50 | -8.615850e-47 |
Msa0944770 | Msa1218960 | 0.814251 | 1.694124e-51 | -8.615850e-47 |
Msa0960160 | Msa1218960 | 0.812021 | 5.228382e-51 | -8.615850e-47 |
Msa0976310 | Msa1218960 | 0.800760 | 1.239029e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1218960 | MtrunA17_Chr4g0068711 | 93.220 | 177 | 8 | 1 | 1 | 177 | 1 | 173 | 8.84e-118 | 330 |
Msa1218960 | MtrunA17_Chr4g0068731 | 70.286 | 175 | 45 | 3 | 1 | 172 | 1 | 171 | 7.23e-80 | 234 |
Msa1218960 | MtrunA17_Chr4g0068791 | 54.749 | 179 | 75 | 4 | 1 | 177 | 1 | 175 | 9.65e-62 | 189 |
Msa1218960 | MtrunA17_Chr4g0068751 | 51.648 | 182 | 83 | 1 | 1 | 177 | 1 | 182 | 5.06e-59 | 182 |
Msa1218960 | MtrunA17_Chr4g0001591 | 50.926 | 108 | 51 | 2 | 72 | 177 | 1 | 108 | 2.17e-26 | 97.1 |
Msa1218960 | MtrunA17_Chr2g0294121 | 36.842 | 171 | 96 | 4 | 19 | 177 | 6 | 176 | 6.19e-23 | 90.1 |
Msa1218960 | MtrunA17_Chr4g0068701 | 36.076 | 158 | 96 | 3 | 25 | 177 | 20 | 177 | 8.34e-21 | 84.3 |
Msa1218960 | MtrunA17_Chr4g0068651 | 28.415 | 183 | 121 | 5 | 1 | 177 | 1 | 179 | 8.85e-20 | 82.0 |
Msa1218960 | MtrunA17_Chr4g0068681 | 31.973 | 147 | 96 | 2 | 35 | 177 | 39 | 185 | 2.08e-15 | 72.8 |
Msa1218960 | MtrunA17_Chr4g0068681 | 31.724 | 145 | 96 | 2 | 35 | 177 | 230 | 373 | 1.68e-14 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1218960 | AT1G47960.2 | 47.260 | 146 | 77 | 0 | 32 | 177 | 21 | 166 | 1.75e-46 | 150 |
Msa1218960 | AT1G47960.1 | 46.479 | 142 | 76 | 0 | 32 | 173 | 21 | 162 | 2.12e-43 | 143 |
Msa1218960 | AT3G17152.1 | 30.286 | 175 | 120 | 1 | 4 | 176 | 1 | 175 | 5.27e-17 | 74.7 |
Msa1218960 | AT3G17150.1 | 31.944 | 144 | 94 | 2 | 37 | 177 | 39 | 181 | 5.86e-15 | 69.7 |
Msa1218960 | AT5G64620.1 | 38.776 | 98 | 56 | 3 | 15 | 108 | 8 | 105 | 9.55e-11 | 58.2 |
Find 23 sgRNAs with CRISPR-Local
Find 26 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAATGCAATTTGCATAATT+TGG | 0.146977 | 8_1:+81653099 | None:intergenic |
GCACCATCTTCTGCAAATTT+AGG | 0.160091 | 8_1:+81652850 | None:intergenic |
ATCAAATTAGCATTGGATTT+TGG | 0.186303 | 8_1:+81653144 | None:intergenic |
TTGAGAGCTGCAACAGATTT+TGG | 0.208499 | 8_1:+81652883 | None:intergenic |
ACATCTGCATCAGAGCTTCT+TGG | 0.293970 | 8_1:+81653060 | None:intergenic |
CAAAATCAATCAGTTGATTA+AGG | 0.305258 | 8_1:-81652977 | Msa1218960:CDS |
TGGTAGATACAAAGCAATTT+TGG | 0.313317 | 8_1:-81652917 | Msa1218960:CDS |
AATGCTAATGCTAATGCTAA+TGG | 0.350974 | 8_1:+81653216 | None:intergenic |
GTTTAAGGCAGTGTTTGCTT+TGG | 0.395895 | 8_1:+81652999 | None:intergenic |
AGCTCTGATGCAGATGTAAC+AGG | 0.425806 | 8_1:-81653054 | Msa1218960:CDS |
ACTTGTGAGAATGGCTTCAA+TGG | 0.435357 | 8_1:-81652802 | Msa1218960:CDS |
AGCTTCTTGGATCAGATTTG+AGG | 0.439581 | 8_1:+81653073 | None:intergenic |
GAAGCCACTACTTGTGAGAA+TGG | 0.448649 | 8_1:-81652811 | Msa1218960:CDS |
TTGCTGTATCAAATTAGCAT+TGG | 0.473617 | 8_1:+81653137 | None:intergenic |
TAAGGAGAGCCATGATCAAA+AGG | 0.474578 | 8_1:-81652959 | Msa1218960:CDS |
CTTGTGAGAATGGCTTCAAT+GGG | 0.531153 | 8_1:-81652801 | Msa1218960:CDS |
GATCCTAAATTTGCAGAAGA+TGG | 0.542535 | 8_1:-81652853 | Msa1218960:CDS |
GAAGCTTTGAATTCATGTGC+TGG | 0.550109 | 8_1:-81652937 | Msa1218960:CDS |
AACAGGTCTAGCACTAATCA+TGG | 0.552410 | 8_1:-81653037 | Msa1218960:CDS |
GAAGCCATTCTCACAAGTAG+TGG | 0.571548 | 8_1:+81652807 | None:intergenic |
TCTGTTGCAGCTCTCAAGCA+AGG | 0.585277 | 8_1:-81652877 | Msa1218960:CDS |
GCAATATTCTCATCAGAGAG+TGG | 0.649907 | 8_1:+81652772 | None:intergenic |
AGGTCTAGCACTAATCATGG+TGG | 0.723735 | 8_1:-81653034 | Msa1218960:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATCAAATTAGCATTGGATTT+TGG | + | chr8_1:81652810-81652829 | None:intergenic | 25.0% |
! | TGAATGCAATTTGCATAATT+TGG | + | chr8_1:81652855-81652874 | None:intergenic | 25.0% |
!!! | CAACTGATTGATTTTGTTTA+AGG | + | chr8_1:81652970-81652989 | None:intergenic | 25.0% |
! | CAAAATCAATCAGTTGATTA+AGG | - | chr8_1:81652974-81652993 | Msa1218960:CDS | 25.0% |
AATGCTAATGCTAATGCTAA+TGG | + | chr8_1:81652738-81652757 | None:intergenic | 30.0% | |
!! | AATTAGCATTGGATTTTGGA+TGG | + | chr8_1:81652806-81652825 | None:intergenic | 30.0% |
TTGCTGTATCAAATTAGCAT+TGG | + | chr8_1:81652817-81652836 | None:intergenic | 30.0% | |
! | TGGTAGATACAAAGCAATTT+TGG | - | chr8_1:81653034-81653053 | Msa1218960:CDS | 30.0% |
! | TCAAAGCTTCCTTTTGATCA+TGG | + | chr8_1:81653004-81653023 | None:intergenic | 35.0% |
GATCCTAAATTTGCAGAAGA+TGG | - | chr8_1:81653098-81653117 | Msa1218960:CDS | 35.0% | |
AGCTTCTTGGATCAGATTTG+AGG | + | chr8_1:81652881-81652900 | None:intergenic | 40.0% | |
AACAGGTCTAGCACTAATCA+TGG | - | chr8_1:81652914-81652933 | Msa1218960:CDS | 40.0% | |
! | GTTTAAGGCAGTGTTTGCTT+TGG | + | chr8_1:81652955-81652974 | None:intergenic | 40.0% |
TAAGGAGAGCCATGATCAAA+AGG | - | chr8_1:81652992-81653011 | Msa1218960:CDS | 40.0% | |
!! | GAAGCTTTGAATTCATGTGC+TGG | - | chr8_1:81653014-81653033 | Msa1218960:CDS | 40.0% |
! | TTGAGAGCTGCAACAGATTT+TGG | + | chr8_1:81653071-81653090 | None:intergenic | 40.0% |
GCACCATCTTCTGCAAATTT+AGG | + | chr8_1:81653104-81653123 | None:intergenic | 40.0% | |
ACTTGTGAGAATGGCTTCAA+TGG | - | chr8_1:81653149-81653168 | Msa1218960:CDS | 40.0% | |
CTTGTGAGAATGGCTTCAAT+GGG | - | chr8_1:81653150-81653169 | Msa1218960:CDS | 40.0% | |
GCAATATTCTCATCAGAGAG+TGG | + | chr8_1:81653182-81653201 | None:intergenic | 40.0% | |
ACATCTGCATCAGAGCTTCT+TGG | + | chr8_1:81652894-81652913 | None:intergenic | 45.0% | |
! | AGCTCTGATGCAGATGTAAC+AGG | - | chr8_1:81652897-81652916 | Msa1218960:CDS | 45.0% |
AGGTCTAGCACTAATCATGG+TGG | - | chr8_1:81652917-81652936 | Msa1218960:CDS | 45.0% | |
GAAGCCACTACTTGTGAGAA+TGG | - | chr8_1:81653140-81653159 | Msa1218960:CDS | 45.0% | |
GAAGCCATTCTCACAAGTAG+TGG | + | chr8_1:81653147-81653166 | None:intergenic | 45.0% | |
TCTGTTGCAGCTCTCAAGCA+AGG | - | chr8_1:81653074-81653093 | Msa1218960:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 81652720 | 81653253 | 81652720 | ID=Msa1218960;Name=Msa1218960 |
chr8_1 | mRNA | 81652720 | 81653253 | 81652720 | ID=Msa1218960-mRNA-1;Parent=Msa1218960;Name=Msa1218960-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|-1|0|1|-1|1|1|0|177 |
chr8_1 | exon | 81652720 | 81653253 | 81652720 | ID=Msa1218960-mRNA-1:exon:28945;Parent=Msa1218960-mRNA-1 |
chr8_1 | CDS | 81652720 | 81653253 | 81652720 | ID=Msa1218960-mRNA-1:cds;Parent=Msa1218960-mRNA-1 |
Gene Sequence |
Protein sequence |