AlfalfaGEDB | Msa0660300

M. sativa cultivar zhongmu-4 / Msa0660300

KEGG: K14500
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0660300	XP_003630514.2	99.387	489	3	0	1	489	1	489	0.0	1017

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0660300	sp\|F4I3M3\|BSK7_ARATH	76.289	485	113	1	1	485	1	483	0.0	781

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0660300	G7LHC7	99.387	489	3	0	1	489	1	489	0.0	1017

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006390	Msa0660300	0.801288	9.664237e-49	-8.615850e-47
Msa0012040	Msa0660300	0.836990	6.768550e-57	-8.615850e-47
Msa0014710	Msa0660300	0.811090	8.331322e-51	-8.615850e-47
Msa0014800	Msa0660300	0.823753	1.168986e-53	-8.615850e-47
Msa0015090	Msa0660300	0.803807	2.922850e-49	-8.615850e-47
Msa0025740	Msa0660300	0.801819	7.521131e-49	-8.615850e-47
Msa0037880	Msa0660300	0.811124	8.191586e-51	-8.615850e-47
Msa0043570	Msa0660300	0.805820	1.109835e-49	-8.615850e-47
Msa0049750	Msa0660300	0.803783	2.956486e-49	-8.615850e-47
Msa0051930	Msa0660300	0.822484	2.311121e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0660300	MtrunA17_Chr8g0386761	99.387	489	3	0	1	489	1	489	0.0	1017
Msa0660300	MtrunA17_Chr8g0349041	75.670	485	116	2	1	485	1	483	0.0	771
Msa0660300	MtrunA17_Chr7g0247441	75.051	489	119	3	1	488	1	487	0.0	765
Msa0660300	MtrunA17_Chr4g0032361	68.283	495	148	3	1	489	1	492	0.0	703
Msa0660300	MtrunA17_Chr5g0448561	62.635	463	166	3	29	485	55	516	0.0	606
Msa0660300	MtrunA17_Chr4g0054861	62.306	451	166	1	43	489	45	495	0.0	595
Msa0660300	MtrunA17_Chr4g0008911	69.330	388	112	4	1	383	1	386	0.0	544
Msa0660300	MtrunA17_Chr2g0328731	53.925	293	76	5	80	368	2	239	1.05e-97	295
Msa0660300	MtrunA17_Chr8g0388941	33.762	311	177	7	36	320	49	356	4.24e-47	167
Msa0660300	MtrunA17_Chr2g0328171	35.831	307	163	9	41	316	57	360	1.26e-46	167

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0660300	AT1G63500.1	76.289	485	113	1	1	485	1	483	781
Msa0660300	AT5G41260.1	74.227	485	123	1	1	485	1	483	766
Msa0660300	AT4G00710.1	72.485	487	130	3	1	487	1	483	743
Msa0660300	AT4G00710.2	72.485	487	130	3	1	487	1	483	743
Msa0660300	AT5G59010.1	69.168	493	142	2	1	489	1	487	714
Msa0660300	AT3G54030.1	66.870	492	153	2	1	487	1	487	680
Msa0660300	AT1G01740.2	69.753	486	135	7	1	485	1	475	677
Msa0660300	AT1G01740.1	69.753	486	135	7	1	485	1	475	677
Msa0660300	AT1G01740.5	68.313	486	134	6	1	485	1	467	662
Msa0660300	AT4G35230.1	63.858	451	157	2	40	485	55	504	604

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Find 137 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCGAAGCATGAAAGTTT+AGG	0.324320	4_3:-70980689	None:intergenic
AAAGAGACAAAGAAAGTGAA+AGG	0.559467	4_3:-70977290	None:intergenic
AAAGTGTAACTTACAGCTTT+GGG	0.454655	4_3:+70981273	Msa0660300:CDS
AAATGAAGACAATAATGTCG+AGG	0.615265	4_3:+70978260	Msa0660300:CDS
AAATTAGTTGAAGTGGTTAT+AGG	0.294769	4_3:+70983308	Msa0660300:exon
AAATTGATGGGCATCTGGCC+AGG	0.482173	4_3:-70978457	None:intergenic
AACAATAGACTCGAAGAAGA+AGG	0.514531	4_3:+70982877	Msa0660300:CDS
AACCCTCTTTAAGTGCCACT+TGG	0.516596	4_3:-70983260	None:intergenic
AACGGTTCAACAAATCAGCC+TGG	0.560787	4_3:+70978439	Msa0660300:CDS
AAGAAACTTACATGGCTTGG+AGG	0.520648	4_3:-70981332	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGACAAAGAAAGTGAA+AGG	-	chr4_3:70977293-70977312	None:intergenic	30.0%
AGAAACATTAACAACCTTAC+GGG	-	chr4_3:70977337-70977356	None:intergenic	30.0%
GCTGAGTCAATTTAATTCAA+CGG	-	chr4_3:70977557-70977576	None:intergenic	30.0%
AAATGAAGACAATAATGTCG+AGG	+	chr4_3:70978260-70978279	Msa0660300:CDS	30.0%
AATGAAGACAATAATGTCGA+GGG	+	chr4_3:70978261-70978280	Msa0660300:CDS	30.0%
GAAAATATAGTTTCTGAGCA+TGG	+	chr4_3:70978354-70978373	Msa0660300:CDS	30.0%
CTCCAAATGTTGTCTATAAA+GGG	+	chr4_3:70978385-70978404	Msa0660300:CDS	30.0%
TTCCCTTTATAGACAACATT+TGG	-	chr4_3:70978390-70978409	None:intergenic	30.0%
TAAAACCGACAAAAATACAG+AGG	-	chr4_3:70978610-70978629	None:intergenic	30.0%
CAACAAAACACCAATTAACT+CGG	-	chr4_3:70978637-70978656	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	70977270	70983695	70977270	ID=Msa0660300;Name=Msa0660300
chr4_3	mRNA	70977270	70983695	70977270	ID=Msa0660300-mRNA-1;Parent=Msa0660300;Name=Msa0660300-mRNA-1;_AED=0.08;_eAED=0.08;_QI=146\|1\|1\|1\|0.81\|0.83\|12\|381\|489
chr4_3	exon	70977270	70977341	70977270	ID=Msa0660300-mRNA-1:exon:21147;Parent=Msa0660300-mRNA-1
chr4_3	exon	70977539	70977606	70977539	ID=Msa0660300-mRNA-1:exon:21148;Parent=Msa0660300-mRNA-1
chr4_3	exon	70978080	70978170	70978080	ID=Msa0660300-mRNA-1:exon:21149;Parent=Msa0660300-mRNA-1
chr4_3	exon	70978259	70978482	70978259	ID=Msa0660300-mRNA-1:exon:21150;Parent=Msa0660300-mRNA-1
chr4_3	exon	70979619	70979754	70979619	ID=Msa0660300-mRNA-1:exon:21151;Parent=Msa0660300-mRNA-1
chr4_3	exon	70979856	70979989	70979856	ID=Msa0660300-mRNA-1:exon:21152;Parent=Msa0660300-mRNA-1
chr4_3	exon	70980680	70980785	70980680	ID=Msa0660300-mRNA-1:exon:21153;Parent=Msa0660300-mRNA-1
chr4_3	exon	70981258	70981343	70981258	ID=Msa0660300-mRNA-1:exon:21154;Parent=Msa0660300-mRNA-1
chr4_3	exon	70981783	70981971	70981783	ID=Msa0660300-mRNA-1:exon:21155;Parent=Msa0660300-mRNA-1
chr4_3	exon	70982230	70982382	70982230	ID=Msa0660300-mRNA-1:exon:21156;Parent=Msa0660300-mRNA-1
chr4_3	exon	70982842	70982955	70982842	ID=Msa0660300-mRNA-1:exon:21157;Parent=Msa0660300-mRNA-1
chr4_3	exon	70983072	70983695	70983072	ID=Msa0660300-mRNA-1:exon:21158;Parent=Msa0660300-mRNA-1
chr4_3	five_prime_UTR	70977270	70977341	70977270	ID=Msa0660300-mRNA-1:five_prime_utr;Parent=Msa0660300-mRNA-1
chr4_3	five_prime_UTR	70977539	70977606	70977539	ID=Msa0660300-mRNA-1:five_prime_utr;Parent=Msa0660300-mRNA-1
chr4_3	five_prime_UTR	70978080	70978085	70978080	ID=Msa0660300-mRNA-1:five_prime_utr;Parent=Msa0660300-mRNA-1
chr4_3	CDS	70978086	70978170	70978086	ID=Msa0660300-mRNA-1:cds;Parent=Msa0660300-mRNA-1
chr4_3	CDS	70978259	70978482	70978259	ID=Msa0660300-mRNA-1:cds;Parent=Msa0660300-mRNA-1
chr4_3	CDS	70979619	70979754	70979619	ID=Msa0660300-mRNA-1:cds;Parent=Msa0660300-mRNA-1
chr4_3	CDS	70979856	70979989	70979856	ID=Msa0660300-mRNA-1:cds;Parent=Msa0660300-mRNA-1
chr4_3	CDS	70980680	70980785	70980680	ID=Msa0660300-mRNA-1:cds;Parent=Msa0660300-mRNA-1
chr4_3	CDS	70981258	70981343	70981258	ID=Msa0660300-mRNA-1:cds;Parent=Msa0660300-mRNA-1
chr4_3	CDS	70981783	70981971	70981783	ID=Msa0660300-mRNA-1:cds;Parent=Msa0660300-mRNA-1
chr4_3	CDS	70982230	70982382	70982230	ID=Msa0660300-mRNA-1:cds;Parent=Msa0660300-mRNA-1
chr4_3	CDS	70982842	70982955	70982842	ID=Msa0660300-mRNA-1:cds;Parent=Msa0660300-mRNA-1
chr4_3	CDS	70983072	70983314	70983072	ID=Msa0660300-mRNA-1:cds;Parent=Msa0660300-mRNA-1
chr4_3	three_prime_UTR	70983315	70983695	70983315	ID=Msa0660300-mRNA-1:three_prime_utr;Parent=Msa0660300-mRNA-1

Gene Sequence

>Msa0660300

ATGGGTTGTAATTTCTCAAAGTACTCAACATGCTGTTGTAGTACTGAGCAAGGTGGCGTTCAGGTTCCTGAGGCAAACATTGAGGAAAATGAAGACAATAATGTCGAGGGCAATGGCTTGGCGTCTTTTCGTGAATATACAATTGATCAGCTTAGGAAGGCTACCTCTGGATTTGCAATTGAAAATATAGTTTCTGAGCATGGTGAAAAGGCTCCAAATGTTGTCTATAAAGGGAAACTTGAAAATCAAGTGCGTATTGCGGTCAAACGGTTCAACAAATCAGCCTGGCCAGATGCCCATCAATTTTTGGAAGAGGCCAGAGCTGTTGGCCAGCTAAGGAGCCAAAGATTGGCAAATCTGCTTGGATGTTGCTGTGAAGGTGATGAAAGGTTGCTTGTATCAGAATATATGTCCAATGATACTTTGGCAAAGCACTTGTTCCATTGGGAAACTCAGCCCATGAAGTGGGCAATGCGGCTTAGAGTTGCTTTATACCTTGCCCAAGCTCTGGAGTACTGTACCAGCAAAGGACGTGCTCTGTACCATGATCTAAATGCTTACAGAGTTCTTTTTGATGATGACTTCAATCCTAAACTTTCATGCTTCGGTTTGATGAAAAACAGTCGAGATGGAAAAAGTTATAGTACAAATTTGGCATTTACACCACCAGAGTATCTCAGGACAGGTAGAGTTACTCCAGAAAGTGTAACTTACAGCTTTGGGACCCTTTTGCTCGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATGCCCTTGACCTGATCAGGGACAGGAACCTTCAGAGTCTAACAGACTCATGTTTAGAAGGACAATTTTCAGATGACGAGGGGACTGAATTGGTTCGTCTAGCTTCACGATGTTTACAATCTGAACCGAGAGAGCGTCCTAATCCGAGGTCACTGGTCACTGCTCTAATACCTTTGCAGAAAGATTCTGAGGTTCCTTCTCATGTGCTGATGGGCATACCTGATGGTAGTGCTGCTTTTCCCCTTACTCCACTCGGAGAAGCTTGTCTACGCATGGATCTGACTTCCATACATGAGGTGCTGGAGAAAATTGGGTATAAAGATGATGAGGGGGCAGCTACTGAGCTTTCATTCCAAATGTGGACCAACCAGATGCAGCAAACAATAGACTCGAAGAAGAAGGGCGATTCTGCTTTTCGGGTGAAGGACTTTAAAACTGCAATTGAGGGCTATACACAGTTTATTGAAGTTGGAAGCATGGTTTCTCCAACAATTTATGCACGTCGTAGTCTGTCTTATCTCATCAACAATATGCCAAACGAAGCACTTGGTGATGCAATGCAGGCGCAAATGATATCTCCTGTTTGGTACATTGCATTTTATTTACAAGCTGTTGCTCTTTTGGCTCTTGGCAAGGAGAATGATGCCCAAGTGGCACTTAAAGAGGGTTCTTCACTTGAAGCTAAAATGAGCACAAATTAG

Protein sequence

>Msa0660300

MGCNFSKYSTCCCSTEQGGVQVPEANIEENEDNNVEGNGLASFREYTIDQLRKATSGFAIENIVSEHGEKAPNVVYKGKLENQVRIAVKRFNKSAWPDAHQFLEEARAVGQLRSQRLANLLGCCCEGDERLLVSEYMSNDTLAKHLFHWETQPMKWAMRLRVALYLAQALEYCTSKGRALYHDLNAYRVLFDDDFNPKLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQSLTDSCLEGQFSDDEGTELVRLASRCLQSEPRERPNPRSLVTALIPLQKDSEVPSHVLMGIPDGSAAFPLTPLGEACLRMDLTSIHEVLEKIGYKDDEGAATELSFQMWTNQMQQTIDSKKKGDSAFRVKDFKTAIEGYTQFIEVGSMVSPTIYARRSLSYLINNMPNEALGDAMQAQMISPVWYIAFYLQAVALLALGKENDAQVALKEGSSLEAKMSTN*