AlfalfaGEDB | Msa1172230

M. sativa cultivar zhongmu-4 / Msa1172230

KEGG: K15210
GO: GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393
PFAM: PF12251.11

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1172230	XP_013467098.1	91.087	460	23	9	1	455	1	447	0.0	832

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1172230	sp\|Q8L627\|SRD2_ARATH	51.020	343	149	7	114	455	51	375	3.21e-110	333

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1172230	I3S3I2	91.087	460	23	9	1	455	1	447	0.0	832

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa1172230	-0.800886	1.167865e-48	-8.615850e-47
Msa0012040	Msa1172230	0.812709	3.698890e-51	-8.615850e-47
Msa0013050	Msa1172230	-0.805938	1.048202e-49	-8.615850e-47
Msa0032610	Msa1172230	0.800553	1.365647e-48	-8.615850e-47
Msa0041970	Msa1172230	0.806343	8.614029e-50	-8.615850e-47
Msa0050720	Msa1172230	0.801640	8.186778e-49	-8.615850e-47
Msa0053900	Msa1172230	0.807618	4.627945e-50	-8.615850e-47
Msa0061150	Msa1172230	0.804172	2.454134e-49	-8.615850e-47
Msa0071240	Msa1172230	0.853537	2.238677e-61	-8.615850e-47
Msa0081230	Msa1172230	0.819797	9.616077e-53	-8.615850e-47

Showing 1 to 10 of 201 entries

Previous1 2 3 4 5…21Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1172230	MtrunA17_Chr1g0167641	91.087	460	23	9	1	455	1	447	0.0	832
Msa1172230	MtrunA17_Chr4g0076621	88.596	456	33	7	1	455	1	438	0.0	812
Msa1172230	MtrunA17_Chr4g0031761	82.072	251	22	10	1	241	1	238	2.62e-127	368
Msa1172230	MtrunA17_Chr8g0354941	71.429	231	43	3	131	361	14	221	2.58e-112	330
Msa1172230	MtrunA17_Chr4g0031751	94.545	110	6	0	259	368	1	110	1.42e-72	224
Msa1172230	MtrunA17_Chr8g0354951	86.316	95	13	0	361	455	2	96	5.00e-58	186
Msa1172230	MtrunA17_Chr8g0354931	52.525	99	36	4	17	107	8	103	7.66e-18	79.3

Showing 1 to 7 of 7 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1172230	AT1G28560.3	46.696	454	208	10	23	455	22	462	8.08e-128	379
Msa1172230	AT1G28560.1	51.020	343	149	7	114	455	51	375	3.26e-111	333
Msa1172230	AT1G28560.2	51.020	343	149	7	114	455	62	386	4.97e-111	333

Showing 1 to 3 of 3 entries

Previous1Next

Find 122 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAAGGCAATTGTCG+GGG	0.664942	8_1:+2088778	Msa1172230:CDS
AAAAGAGGAACCCTAACAAT+TGG	0.405666	8_1:-2087479	None:intergenic
AAACAACAACAAGTCTTTCA+GGG	0.453600	8_1:+2087632	Msa1172230:CDS
AAAGAGGAACCCTAACAATT+GGG	0.516740	8_1:-2087478	None:intergenic
AAAGTACCTGATGACAATAA+AGG	0.462826	8_1:-2088892	None:intergenic
AAATAATAATACAAATAAAG+AGG	0.532711	8_1:-2090980	None:intergenic
AAATGGGAATATATTATAAA+TGG	0.182807	8_1:+2088743	Msa1172230:CDS
AACAATTGGGCCAGACATAT+TGG	0.330843	8_1:-2087465	None:intergenic
AACCTTTGTGGCAGAACTTG+TGG	0.482472	8_1:-2088118	None:intergenic
AACTCTGCTGCTGCAGCATT+AGG	0.385029	8_1:-2087683	None:intergenic

Showing 1 to 10 of 122 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGGAAGCAAAAATTTGAAG+TGG	-	chr8_1:2087109-2087128	None:intergenic	30.0%
TCGAAATAAAACATGACACA+TGG	+	chr8_1:2087297-2087316	Msa1172230:five_prime_UTR	30.0%
TTGGAATTGGAATGTTCAAT+TGG	+	chr8_1:2087392-2087411	Msa1172230:CDS	30.0%
GACATATTGGAAACGTAAAT+GGG	-	chr8_1:2087455-2087474	None:intergenic	30.0%
AGACATATTGGAAACGTAAA+TGG	-	chr8_1:2087456-2087475	None:intergenic	30.0%
ATTTACGTTTCCAATATGTC+TGG	+	chr8_1:2087455-2087474	Msa1172230:CDS	30.0%
AAACAACAACAAGTCTTTCA+GGG	+	chr8_1:2087632-2087651	Msa1172230:CDS	30.0%
TAATTGTAAAGAAAAGGTGG+AGG	+	chr8_1:2087863-2087882	Msa1172230:CDS	30.0%
GAAGAAGAAGAAGAAAGATA+AGG	-	chr8_1:2088193-2088212	None:intergenic	30.0%
CTTCTTCTTTAATGTTTCAC+AGG	+	chr8_1:2088206-2088225	Msa1172230:intron	30.0%

Showing 1 to 10 of 333 entries

Previous1 2 3 4 5…34Next

Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	2086986	2091049	2086986	ID=Msa1172230;Name=Msa1172230
chr8_1	mRNA	2086986	2091049	2086986	ID=Msa1172230-mRNA-1;Parent=Msa1172230;Name=Msa1172230-mRNA-1;_AED=0.08;_eAED=0.08;_QI=385\|1\|1\|1\|1\|1\|7\|408\|455
chr8_1	exon	2086986	2087702	2086986	ID=Msa1172230-mRNA-1:exon:830;Parent=Msa1172230-mRNA-1
chr8_1	exon	2087797	2087949	2087797	ID=Msa1172230-mRNA-1:exon:831;Parent=Msa1172230-mRNA-1
chr8_1	exon	2088044	2088137	2088044	ID=Msa1172230-mRNA-1:exon:832;Parent=Msa1172230-mRNA-1
chr8_1	exon	2088228	2088344	2088228	ID=Msa1172230-mRNA-1:exon:833;Parent=Msa1172230-mRNA-1
chr8_1	exon	2088449	2088574	2088449	ID=Msa1172230-mRNA-1:exon:834;Parent=Msa1172230-mRNA-1
chr8_1	exon	2088647	2088907	2088647	ID=Msa1172230-mRNA-1:exon:835;Parent=Msa1172230-mRNA-1
chr8_1	exon	2090357	2091049	2090357	ID=Msa1172230-mRNA-1:exon:836;Parent=Msa1172230-mRNA-1
chr8_1	five_prime_UTR	2086986	2087370	2086986	ID=Msa1172230-mRNA-1:five_prime_utr;Parent=Msa1172230-mRNA-1
chr8_1	CDS	2087371	2087702	2087371	ID=Msa1172230-mRNA-1:cds;Parent=Msa1172230-mRNA-1
chr8_1	CDS	2087797	2087949	2087797	ID=Msa1172230-mRNA-1:cds;Parent=Msa1172230-mRNA-1
chr8_1	CDS	2088044	2088137	2088044	ID=Msa1172230-mRNA-1:cds;Parent=Msa1172230-mRNA-1
chr8_1	CDS	2088228	2088344	2088228	ID=Msa1172230-mRNA-1:cds;Parent=Msa1172230-mRNA-1
chr8_1	CDS	2088449	2088574	2088449	ID=Msa1172230-mRNA-1:cds;Parent=Msa1172230-mRNA-1
chr8_1	CDS	2088647	2088907	2088647	ID=Msa1172230-mRNA-1:cds;Parent=Msa1172230-mRNA-1
chr8_1	CDS	2090357	2090641	2090357	ID=Msa1172230-mRNA-1:cds;Parent=Msa1172230-mRNA-1
chr8_1	three_prime_UTR	2090642	2091049	2090642	ID=Msa1172230-mRNA-1:three_prime_utr;Parent=Msa1172230-mRNA-1

Gene Sequence

>Msa1172230

ATGGATGACGATGAATTGGAATTGGAATTGGAATGTTCAATTGGAATTGATGATCCTTCAATCTCAATTCCGAGGGGTGGACCCATTTACGTTTCCAATATGTCTGGCCCAATTGTTAGGGTTCCTCTTTTTCAGGATTCACTTCTTTCTCAACTTCACTCTCTCCAATCTGAATTACCTCCTGATTCGAATCATGATCATGATATTAGCGTCGATGATCTTAAAGTTTTTACTGAGGACCAGTTAATGGACATGGCTTTGAAACAACAACAAGTCTTTCAGGGTGAAAGAGACAACAATCAAAATCAACCTCCTAATGCTGCAGCAGCAGACAGGGGTCAGAATAACAAGCTCTTCAGGAGAAAGTCCCGTCGAACAAATAAACCCATTCTTGATAGTAATTGTAAAGAAAAGGTGGAGGAGGTTGTCAGAATCAAACACAAGCAGGAGGAAGATAAGGCACAAGTCACACTTCATTCATTTCATCCTGATTCCAGGATCAATCAATCTGCCAACAAATCAAAATCAATCAAAACTCAAAGGATGATGTCTCTTAGGTCCACAAGTTCTGCCACAAAGGTCAACACAATGGCTCTTCAGGAGCACATACCTGTGCAGGATTCAGAAGTTGTTCTCTCTATCGAGATTTACCATAATTTTCGAAAAGGTGTCAAGCTATCCAATGCCAAAAAAAAGACCCAAGAGCTGTTAGTTCTTGGTGGCCAGAACTTATCTGTATTGAGGGACAAGATCAATTGCTCAACGGACCAGGTTATGCAAAAAGCTGGCCAACATGACCCTTCTGGTTATTTTCTAATTGAGGATGTATTTTACACTGATTTGAGGGATCCATCTGCTATTGATTTGACCAGACCCATACTCGATTGGCTTCAAAACTCCAAGGAGGAGGCACAGAAGAAATGGGAATATATTATAAATGGGGAACTACAGCAAAAACAAAAGGCAATTGTCGGGGAAGCATCTGTATCACACTTGCCTCGTTTTGCATCTTTTGAGATGCACAAGATACATTTTTGTGATTTAGGTTTTCGGCTTGGTGCTGGATACCTTTATTGTCATCAGGGTAACTGTACCCATACCTTAGTAATACGAGATATGAGGTTAATTCATGCCGATGATGTACAGAATTGGGCTGTTTATCCAATTGTCACTTTTCAACTGAAGATACGTTTTCAGAAATGCGGTGTTTGCAAAATATTCAGAGCTACAAAGGTCACTGTGGATGACAAATGGACACCAGACAACCCTTGTTATTTTTGTGATGAATGTTTTTCCCTTCTTCACCTAGCAGAGGATGGCTCTCCATCGTATACCGACTTCATAGAATATGATTATAACCATGATTAA

Protein sequence

>Msa1172230

MDDDELELELECSIGIDDPSISIPRGGPIYVSNMSGPIVRVPLFQDSLLSQLHSLQSELPPDSNHDHDISVDDLKVFTEDQLMDMALKQQQVFQGERDNNQNQPPNAAAADRGQNNKLFRRKSRRTNKPILDSNCKEKVEEVVRIKHKQEEDKAQVTLHSFHPDSRINQSANKSKSIKTQRMMSLRSTSSATKVNTMALQEHIPVQDSEVVLSIEIYHNFRKGVKLSNAKKKTQELLVLGGQNLSVLRDKINCSTDQVMQKAGQHDPSGYFLIEDVFYTDLRDPSAIDLTRPILDWLQNSKEEAQKKWEYIINGELQQKQKAIVGEASVSHLPRFASFEMHKIHFCDLGFRLGAGYLYCHQGNCTHTLVIRDMRLIHADDVQNWAVYPIVTFQLKIRFQKCGVCKIFRATKVTVDDKWTPDNPCYFCDECFSLLHLAEDGSPSYTDFIEYDYNHD*