Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333990 | sp|Q9M0B9|IBL1_ARATH | 42.077 | 183 | 99 | 4 | 1 | 179 | 1 | 180 | 6.52e-31 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333990 | G7JEC9 | 94.444 | 180 | 7 | 1 | 1 | 180 | 1 | 177 | 1.16e-115 | 335 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044710 | Msa1333990 | 0.812674 | 3.765484e-51 | -8.615850e-47 |
| Msa0050720 | Msa1333990 | 0.802469 | 5.526926e-49 | -8.615850e-47 |
| Msa0071240 | Msa1333990 | 0.847936 | 8.433128e-60 | -8.615850e-47 |
| Msa0084940 | Msa1333990 | 0.812677 | 3.758112e-51 | -8.615850e-47 |
| Msa0087000 | Msa1333990 | 0.807846 | 4.139883e-50 | -8.615850e-47 |
| Msa0092990 | Msa1333990 | 0.809662 | 1.693842e-50 | -8.615850e-47 |
| Msa0094920 | Msa1333990 | 0.811312 | 7.456391e-51 | -8.615850e-47 |
| Msa0095380 | Msa1333990 | 0.801051 | 1.080581e-48 | -8.615850e-47 |
| Msa0105700 | Msa1333990 | 0.821585 | 3.734658e-53 | -8.615850e-47 |
| Msa0111310 | Msa1333990 | 0.800777 | 1.229053e-48 | -8.615850e-47 |
| Msa0617830 | Msa1333990 | 0.817821 | 2.702479e-52 | -8.615850e-47 |
| Msa0619070 | Msa1333990 | 0.814459 | 1.523914e-51 | -8.615850e-47 |
| Msa0621590 | Msa1333990 | 0.814097 | 1.832691e-51 | -8.615850e-47 |
| Msa0631990 | Msa1333990 | 0.800642 | 1.309342e-48 | -8.615850e-47 |
| Msa0638280 | Msa1333990 | 0.849637 | 2.845974e-60 | -8.615850e-47 |
| Msa0638320 | Msa1333990 | 0.840486 | 8.447481e-58 | -8.615850e-47 |
| Msa0647450 | Msa1333990 | -0.834166 | 3.506712e-56 | -8.615850e-47 |
| Msa0662650 | Msa1333990 | 0.805474 | 1.311705e-49 | -8.615850e-47 |
| Msa0669850 | Msa1333990 | 0.827804 | 1.278091e-54 | -8.615850e-47 |
| Msa0677270 | Msa1333990 | 0.838556 | 2.681406e-57 | -8.615850e-47 |
| Msa0708860 | Msa1333990 | 0.801826 | 7.496727e-49 | -8.615850e-47 |
| Msa0711490 | Msa1333990 | 0.805790 | 1.125878e-49 | -8.615850e-47 |
| Msa0743260 | Msa1333990 | 0.809570 | 1.772755e-50 | -8.615850e-47 |
| Msa0756310 | Msa1333990 | 0.807421 | 5.095697e-50 | -8.615850e-47 |
| Msa0789270 | Msa1333990 | 0.809261 | 2.065219e-50 | -8.615850e-47 |
| Msa0789280 | Msa1333990 | 0.807560 | 4.763121e-50 | -8.615850e-47 |
| Msa0789290 | Msa1333990 | 0.805523 | 1.281438e-49 | -8.615850e-47 |
| Msa0789300 | Msa1333990 | 0.801219 | 9.985185e-49 | -8.615850e-47 |
| Msa0791100 | Msa1333990 | 0.809703 | 1.659742e-50 | -8.615850e-47 |
| Msa0792090 | Msa1333990 | 0.822117 | 2.811618e-53 | -8.615850e-47 |
| Msa0831870 | Msa1333990 | 0.806776 | 6.979802e-50 | -8.615850e-47 |
| Msa0835730 | Msa1333990 | 0.806536 | 7.842116e-50 | -8.615850e-47 |
| Msa0152170 | Msa1333990 | 0.802832 | 4.653191e-49 | -8.615850e-47 |
| Msa0223290 | Msa1333990 | 0.807302 | 5.401772e-50 | -8.615850e-47 |
| Msa0223380 | Msa1333990 | 0.841476 | 4.644658e-58 | -8.615850e-47 |
| Msa0233610 | Msa1333990 | 0.807237 | 5.574430e-50 | -8.615850e-47 |
| Msa1233500 | Msa1333990 | 0.819584 | 1.075716e-52 | -8.615850e-47 |
| Msa1245310 | Msa1333990 | 0.801220 | 9.976901e-49 | -8.615850e-47 |
| Msa1267260 | Msa1333990 | 0.810596 | 1.065394e-50 | -8.615850e-47 |
| Msa1282920 | Msa1333990 | 0.816680 | 4.881727e-52 | -8.615850e-47 |
| Msa1303160 | Msa1333990 | 0.861270 | 1.154354e-63 | -8.615850e-47 |
| Msa1307740 | Msa1333990 | 0.808367 | 3.207131e-50 | -8.615850e-47 |
| Msa1333990 | Msa1369530 | 0.867314 | 1.498998e-65 | -8.615850e-47 |
| Msa1333990 | Msa1396830 | 0.823976 | 1.036169e-53 | -8.615850e-47 |
| Msa1333990 | Msa1403930 | -0.808283 | 3.341849e-50 | -8.615850e-47 |
| Msa1333990 | Msa1408790 | 0.806454 | 8.161496e-50 | -8.615850e-47 |
| Msa1333990 | Msa1427830 | 0.821976 | 3.031378e-53 | -8.615850e-47 |
| Msa1333990 | Msa1432640 | 0.807721 | 4.400665e-50 | -8.615850e-47 |
| Msa1333990 | Msa1436040 | 0.814130 | 1.801749e-51 | -8.615850e-47 |
| Msa1333990 | Msa1439960 | 0.811182 | 7.957583e-51 | -8.615850e-47 |
| Msa1333990 | Msa1440610 | 0.807404 | 5.138282e-50 | -8.615850e-47 |
| Msa1333990 | Msa1454110 | 0.809077 | 2.261832e-50 | -8.615850e-47 |
| Msa0377530 | Msa1333990 | 0.828052 | 1.114030e-54 | -8.615850e-47 |
| Msa0380040 | Msa1333990 | 0.822732 | 2.023326e-53 | -8.615850e-47 |
| Msa0389810 | Msa1333990 | 0.813259 | 2.802204e-51 | -8.615850e-47 |
| Msa0404000 | Msa1333990 | 0.807894 | 4.043522e-50 | -8.615850e-47 |
| Msa0404030 | Msa1333990 | 0.815104 | 1.096638e-51 | -8.615850e-47 |
| Msa0426810 | Msa1333990 | 0.802194 | 6.296710e-49 | -8.615850e-47 |
| Msa0429290 | Msa1333990 | 0.820430 | 6.888116e-53 | -8.615850e-47 |
| Msa0467960 | Msa1333990 | -0.807573 | 4.731617e-50 | -8.615850e-47 |
| Msa0468130 | Msa1333990 | 0.804527 | 2.070178e-49 | -8.615850e-47 |
| Msa0473240 | Msa1333990 | 0.829870 | 4.040779e-55 | -8.615850e-47 |
| Msa0475580 | Msa1333990 | 0.810742 | 9.910016e-51 | -8.615850e-47 |
| Msa0982270 | Msa1333990 | 0.813041 | 3.129116e-51 | -8.615850e-47 |
| Msa0992490 | Msa1333990 | -0.828561 | 8.397740e-55 | -8.615850e-47 |
| Msa1021340 | Msa1333990 | 0.802608 | 5.175901e-49 | -8.615850e-47 |
| Msa1026760 | Msa1333990 | 0.802807 | 4.708063e-49 | -8.615850e-47 |
| Msa1026790 | Msa1333990 | 0.800885 | 1.168523e-48 | -8.615850e-47 |
| Msa1039880 | Msa1333990 | 0.815394 | 9.455430e-52 | -8.615850e-47 |
| Msa1072460 | Msa1333990 | -0.823310 | 1.484167e-53 | -8.615850e-47 |
| Msa1087470 | Msa1333990 | 0.803079 | 4.136815e-49 | -8.615850e-47 |
| Msa1095480 | Msa1333990 | 0.820030 | 8.507339e-53 | -8.615850e-47 |
| Msa0260210 | Msa1333990 | 0.808919 | 2.444342e-50 | -8.615850e-47 |
| Msa0269450 | Msa1333990 | 0.806153 | 9.444462e-50 | -8.615850e-47 |
| Msa0280570 | Msa1333990 | 0.804991 | 1.655669e-49 | -8.615850e-47 |
| Msa0288240 | Msa1333990 | 0.807483 | 4.945330e-50 | -8.615850e-47 |
| Msa0288330 | Msa1333990 | 0.813148 | 2.963208e-51 | -8.615850e-47 |
| Msa0296160 | Msa1333990 | 0.815110 | 1.093358e-51 | -8.615850e-47 |
| Msa0304290 | Msa1333990 | 0.817026 | 4.082698e-52 | -8.615850e-47 |
| Msa0304330 | Msa1333990 | 0.819140 | 1.357661e-52 | -8.615850e-47 |
| Msa0304700 | Msa1333990 | 0.808803 | 2.587985e-50 | -8.615850e-47 |
| Msa0305890 | Msa1333990 | 0.801316 | 9.538373e-49 | -8.615850e-47 |
| Msa0326670 | Msa1333990 | 0.821728 | 3.460467e-53 | -8.615850e-47 |
| Msa0334570 | Msa1333990 | 0.815900 | 7.294860e-52 | -8.615850e-47 |
| Msa0340810 | Msa1333990 | 0.804938 | 1.698550e-49 | -8.615850e-47 |
| Msa0344830 | Msa1333990 | 0.857443 | 1.626193e-62 | -8.615850e-47 |
| Msa1211110 | Msa1333990 | 0.804099 | 2.541025e-49 | -8.615850e-47 |
| Msa1217860 | Msa1333990 | 0.807535 | 4.821642e-50 | -8.615850e-47 |
| Msa0517490 | Msa1333990 | 0.814830 | 1.261763e-51 | -8.615850e-47 |
| Msa0519220 | Msa1333990 | 0.818813 | 1.611557e-52 | -8.615850e-47 |
| Msa0535030 | Msa1333990 | 0.818788 | 1.632574e-52 | -8.615850e-47 |
| Msa0535060 | Msa1333990 | 0.823452 | 1.374475e-53 | -8.615850e-47 |
| Msa0540070 | Msa1333990 | 0.811421 | 7.059681e-51 | -8.615850e-47 |
| Msa0553220 | Msa1333990 | -0.819991 | 8.681962e-53 | -8.615850e-47 |
| Msa0562440 | Msa1333990 | 0.816192 | 6.276118e-52 | -8.615850e-47 |
| Msa0568820 | Msa1333990 | 0.814918 | 1.206282e-51 | -8.615850e-47 |
| Msa0587690 | Msa1333990 | 0.814504 | 1.489334e-51 | -8.615850e-47 |
| Msa0591060 | Msa1333990 | 0.806371 | 8.495943e-50 | -8.615850e-47 |
| Msa0591770 | Msa1333990 | 0.829643 | 4.589102e-55 | -8.615850e-47 |
| Msa0855430 | Msa1333990 | 0.802114 | 6.541211e-49 | -8.615850e-47 |
| Msa0874500 | Msa1333990 | 0.832899 | 7.265554e-56 | -8.615850e-47 |
| Msa0874570 | Msa1333990 | 0.816115 | 6.530464e-52 | -8.615850e-47 |
| Msa0946080 | Msa1333990 | 0.805957 | 1.038718e-49 | -8.615850e-47 |
| Msa0974630 | Msa1333990 | 0.801738 | 7.813735e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333990 | MtrunA17_Chr4g0073201 | 94.444 | 180 | 7 | 1 | 1 | 180 | 1 | 177 | 2.24e-119 | 335 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333990 | AT4G30410.2 | 42.077 | 183 | 99 | 4 | 1 | 179 | 1 | 180 | 6.63e-32 | 113 |
| Msa1333990 | AT4G30410.1 | 42.077 | 183 | 99 | 4 | 1 | 179 | 1 | 180 | 6.63e-32 | 113 |
| Msa1333990 | AT5G57780.1 | 38.764 | 178 | 84 | 7 | 1 | 176 | 2 | 156 | 9.73e-28 | 102 |
Find 37 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTATTCTCTTTATAGAAAA+AGG | 0.151336 | 8_4:+54275981 | Msa1333990:CDS |
| TAAATCAGCAGAAAGCTTTA+TGG | 0.212678 | 8_4:-54275816 | None:intergenic |
| TCTTCACATAAGAAGGTAAT+AGG | 0.223742 | 8_4:+54275941 | Msa1333990:CDS |
| TTGTTGAAGTATTTGCAATT+AGG | 0.256685 | 8_4:-54275886 | None:intergenic |
| TGAGAGATTCTATATAATCT+AGG | 0.292570 | 8_4:-54276162 | None:intergenic |
| TGTTGAAGTATTTGCAATTA+GGG | 0.303984 | 8_4:-54275885 | None:intergenic |
| TATTGTAAAAGCTAATACTA+TGG | 0.318727 | 8_4:-54276298 | None:intergenic |
| ATTCCTAAGGAAATGGATAA+AGG | 0.331543 | 8_4:+54275736 | Msa1333990:CDS |
| TATATAAGTATATTAATTTA+CGG | 0.332984 | 8_4:-54276244 | None:intergenic |
| TGCTTTCTATACATACATTA+AGG | 0.340892 | 8_4:+54276416 | Msa1333990:three_prime_UTR |
| GTTACCAGGTGGAAAATTCA+TGG | 0.380790 | 8_4:+54276114 | Msa1333990:CDS |
| AGCAAGAATTCCTAAGGAAA+TGG | 0.389199 | 8_4:+54275729 | Msa1333990:CDS |
| ATCTTTGCAAGCTAGAGTTA+TGG | 0.428655 | 8_4:+54276383 | Msa1333990:three_prime_UTR |
| CTTCACATAAGAAGGTAATA+GGG | 0.431570 | 8_4:+54275942 | Msa1333990:CDS |
| TTCCTAAGGAAATGGATAAA+GGG | 0.440057 | 8_4:+54275737 | Msa1333990:CDS |
| CTAAAGACAAAACTACCCTT+TGG | 0.442557 | 8_4:+54275855 | Msa1333990:CDS |
| GACCCTTTATCCATTTCCTT+AGG | 0.455134 | 8_4:-54275739 | None:intergenic |
| GAGAGATTCTATATAATCTA+GGG | 0.474006 | 8_4:-54276161 | None:intergenic |
| TGAAGAGATAAAGTAGAAGA+TGG | 0.478192 | 8_4:-54275479 | None:intergenic |
| AAAGATAAAGTGTAAATTGA+GGG | 0.484799 | 8_4:-54276366 | None:intergenic |
| GTCTTTAGACGTGGAAGCCA+TGG | 0.491623 | 8_4:-54275840 | None:intergenic |
| AACCTCATCTTCACATAAGA+AGG | 0.491845 | 8_4:+54275934 | Msa1333990:CDS |
| CAAAGATAAAGTGTAAATTG+AGG | 0.535548 | 8_4:-54276367 | None:intergenic |
| TGCTCAAGCAAGAATTCCTA+AGG | 0.547032 | 8_4:+54275723 | Msa1333990:CDS |
| TACCTTCTTATGTGAAGATG+AGG | 0.560965 | 8_4:-54275936 | None:intergenic |
| GCTTTCTGCTGATTTAGCCA+TGG | 0.566451 | 8_4:+54275823 | Msa1333990:CDS |
| GATGAGAGATGGAAGCAAAG+TGG | 0.576621 | 8_4:-54275402 | None:intergenic |
| GCTAGAGTTATGGAGGAAAG+AGG | 0.582149 | 8_4:+54276393 | Msa1333990:three_prime_UTR |
| TCTCTTCAAGAGTTTGAGCA+AGG | 0.584990 | 8_4:+54275494 | Msa1333990:five_prime_UTR |
| TTTGCAAGCTAGAGTTATGG+AGG | 0.607643 | 8_4:+54276386 | Msa1333990:three_prime_UTR |
| CTCAAGAGTTTGTTACCAGG+TGG | 0.612619 | 8_4:+54276103 | Msa1333990:CDS |
| AGGCTCAAGAGTTTGTTACC+AGG | 0.621754 | 8_4:+54276100 | Msa1333990:CDS |
| TGGTTAAGAAAAGAACAAGA+AGG | 0.644687 | 8_4:+54276080 | Msa1333990:CDS |
| TCGATTAACGAAGAGTTCTG+AGG | 0.651928 | 8_4:-54276221 | None:intergenic |
| GTTGAGAAGAAATCGTGCAA+AGG | 0.662740 | 8_4:+54276024 | Msa1333990:CDS |
| TACATTAAGGCAATGTACAG+AGG | 0.665796 | 8_4:+54276429 | Msa1333990:three_prime_UTR |
| TCGTGCAAAGGAAAGAGTTG+AGG | 0.666359 | 8_4:+54276036 | Msa1333990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGACGTTTTTTTTTTTTT+TGG | - | chr8_4:54275451-54275470 | None:intergenic | 15.0% |
| !! | ATATATGATATAATATGCTA+GGG | - | chr8_4:54275641-54275660 | None:intergenic | 15.0% |
| !!! | AATGACGTTTTTTTTTTTTT+TGG | - | chr8_4:54275451-54275470 | None:intergenic | 15.0% |
| !! | ATATATGATATAATATGCTA+GGG | - | chr8_4:54275641-54275660 | None:intergenic | 15.0% |
| !! | CATATATGATATAATATGCT+AGG | - | chr8_4:54275642-54275661 | None:intergenic | 20.0% |
| !! | CAAATTAAAAAAAAATACGC+AGG | - | chr8_4:54275683-54275702 | None:intergenic | 20.0% |
| !! | CTTTATAGAAAAAGGATAAT+TGG | + | chr8_4:54275989-54276008 | Msa1333990:CDS | 20.0% |
| !! | TATTGTAAAAGCTAATACTA+TGG | - | chr8_4:54276301-54276320 | None:intergenic | 20.0% |
| !! | AAAGATAAAGTGTAAATTGA+GGG | - | chr8_4:54276369-54276388 | None:intergenic | 20.0% |
| !! | CATATATGATATAATATGCT+AGG | - | chr8_4:54275642-54275661 | None:intergenic | 20.0% |
| !! | CAAATTAAAAAAAAATACGC+AGG | - | chr8_4:54275683-54275702 | None:intergenic | 20.0% |
| !! | CTTTATAGAAAAAGGATAAT+TGG | + | chr8_4:54275989-54276008 | Msa1333990:CDS | 20.0% |
| !! | TATTGTAAAAGCTAATACTA+TGG | - | chr8_4:54276301-54276320 | None:intergenic | 20.0% |
| !! | AAAGATAAAGTGTAAATTGA+GGG | - | chr8_4:54276369-54276388 | None:intergenic | 20.0% |
| !! | TGTTGAAGTATTTGCAATTA+GGG | - | chr8_4:54275888-54275907 | None:intergenic | 25.0% |
| !! | TTGTTGAAGTATTTGCAATT+AGG | - | chr8_4:54275889-54275908 | None:intergenic | 25.0% |
| !! | CCTTTTTCTATAAAGAGAAT+AGG | - | chr8_4:54275984-54276003 | None:intergenic | 25.0% |
| ! | CCTATTCTCTTTATAGAAAA+AGG | + | chr8_4:54275981-54276000 | Msa1333990:CDS | 25.0% |
| ! | ATAGAAAAAGGATAATTGGA+AGG | + | chr8_4:54275993-54276012 | Msa1333990:CDS | 25.0% |
| ! | GAGAGATTCTATATAATCTA+GGG | - | chr8_4:54276164-54276183 | None:intergenic | 25.0% |
| ! | TGAGAGATTCTATATAATCT+AGG | - | chr8_4:54276165-54276184 | None:intergenic | 25.0% |
| ! | CAAAGATAAAGTGTAAATTG+AGG | - | chr8_4:54276370-54276389 | None:intergenic | 25.0% |
| ! | TGCTTTCTATACATACATTA+AGG | + | chr8_4:54276416-54276435 | Msa1333990:three_prime_UTR | 25.0% |
| !! | TGTTGAAGTATTTGCAATTA+GGG | - | chr8_4:54275888-54275907 | None:intergenic | 25.0% |
| !! | TTGTTGAAGTATTTGCAATT+AGG | - | chr8_4:54275889-54275908 | None:intergenic | 25.0% |
| !! | CCTTTTTCTATAAAGAGAAT+AGG | - | chr8_4:54275984-54276003 | None:intergenic | 25.0% |
| ! | CCTATTCTCTTTATAGAAAA+AGG | + | chr8_4:54275981-54276000 | Msa1333990:CDS | 25.0% |
| ! | ATAGAAAAAGGATAATTGGA+AGG | + | chr8_4:54275993-54276012 | Msa1333990:CDS | 25.0% |
| ! | GAGAGATTCTATATAATCTA+GGG | - | chr8_4:54276164-54276183 | None:intergenic | 25.0% |
| ! | TGAGAGATTCTATATAATCT+AGG | - | chr8_4:54276165-54276184 | None:intergenic | 25.0% |
| ! | CAAAGATAAAGTGTAAATTG+AGG | - | chr8_4:54276370-54276389 | None:intergenic | 25.0% |
| ! | TGCTTTCTATACATACATTA+AGG | + | chr8_4:54276416-54276435 | Msa1333990:three_prime_UTR | 25.0% |
| TGAAGAGATAAAGTAGAAGA+TGG | - | chr8_4:54275482-54275501 | None:intergenic | 30.0% | |
| GGGCTTAATATAGTTATTCT+TGG | - | chr8_4:54275621-54275640 | None:intergenic | 30.0% | |
| ATTCCTAAGGAAATGGATAA+AGG | + | chr8_4:54275736-54275755 | Msa1333990:CDS | 30.0% | |
| TTCCTAAGGAAATGGATAAA+GGG | + | chr8_4:54275737-54275756 | Msa1333990:CDS | 30.0% | |
| TAAATCAGCAGAAAGCTTTA+TGG | - | chr8_4:54275819-54275838 | None:intergenic | 30.0% | |
| TCTTCACATAAGAAGGTAAT+AGG | + | chr8_4:54275941-54275960 | Msa1333990:CDS | 30.0% | |
| CTTCACATAAGAAGGTAATA+GGG | + | chr8_4:54275942-54275961 | Msa1333990:CDS | 30.0% | |
| TGGTTAAGAAAAGAACAAGA+AGG | + | chr8_4:54276080-54276099 | Msa1333990:CDS | 30.0% | |
| TGAAGAGATAAAGTAGAAGA+TGG | - | chr8_4:54275482-54275501 | None:intergenic | 30.0% | |
| GGGCTTAATATAGTTATTCT+TGG | - | chr8_4:54275621-54275640 | None:intergenic | 30.0% | |
| ATTCCTAAGGAAATGGATAA+AGG | + | chr8_4:54275736-54275755 | Msa1333990:CDS | 30.0% | |
| TTCCTAAGGAAATGGATAAA+GGG | + | chr8_4:54275737-54275756 | Msa1333990:CDS | 30.0% | |
| TAAATCAGCAGAAAGCTTTA+TGG | - | chr8_4:54275819-54275838 | None:intergenic | 30.0% | |
| TCTTCACATAAGAAGGTAAT+AGG | + | chr8_4:54275941-54275960 | Msa1333990:CDS | 30.0% | |
| CTTCACATAAGAAGGTAATA+GGG | + | chr8_4:54275942-54275961 | Msa1333990:CDS | 30.0% | |
| TGGTTAAGAAAAGAACAAGA+AGG | + | chr8_4:54276080-54276099 | Msa1333990:CDS | 30.0% | |
| !! | GACGAAATTTTGATGAGAGA+TGG | - | chr8_4:54275416-54275435 | None:intergenic | 35.0% |
| AGCAAGAATTCCTAAGGAAA+TGG | + | chr8_4:54275729-54275748 | Msa1333990:CDS | 35.0% | |
| CTAAAGACAAAACTACCCTT+TGG | + | chr8_4:54275855-54275874 | Msa1333990:CDS | 35.0% | |
| ! | AATTAGGGCTTTTCTCCAAA+GGG | - | chr8_4:54275873-54275892 | None:intergenic | 35.0% |
| AACCTCATCTTCACATAAGA+AGG | + | chr8_4:54275934-54275953 | Msa1333990:CDS | 35.0% | |
| TACCTTCTTATGTGAAGATG+AGG | - | chr8_4:54275939-54275958 | None:intergenic | 35.0% | |
| ATCTTTGCAAGCTAGAGTTA+TGG | + | chr8_4:54276383-54276402 | Msa1333990:three_prime_UTR | 35.0% | |
| !! | GACGAAATTTTGATGAGAGA+TGG | - | chr8_4:54275416-54275435 | None:intergenic | 35.0% |
| AGCAAGAATTCCTAAGGAAA+TGG | + | chr8_4:54275729-54275748 | Msa1333990:CDS | 35.0% | |
| CTAAAGACAAAACTACCCTT+TGG | + | chr8_4:54275855-54275874 | Msa1333990:CDS | 35.0% | |
| ! | AATTAGGGCTTTTCTCCAAA+GGG | - | chr8_4:54275873-54275892 | None:intergenic | 35.0% |
| AACCTCATCTTCACATAAGA+AGG | + | chr8_4:54275934-54275953 | Msa1333990:CDS | 35.0% | |
| TACCTTCTTATGTGAAGATG+AGG | - | chr8_4:54275939-54275958 | None:intergenic | 35.0% | |
| ATCTTTGCAAGCTAGAGTTA+TGG | + | chr8_4:54276383-54276402 | Msa1333990:three_prime_UTR | 35.0% | |
| TCTCTTCAAGAGTTTGAGCA+AGG | + | chr8_4:54275494-54275513 | Msa1333990:five_prime_UTR | 40.0% | |
| TGCTCAAGCAAGAATTCCTA+AGG | + | chr8_4:54275723-54275742 | Msa1333990:CDS | 40.0% | |
| GACCCTTTATCCATTTCCTT+AGG | - | chr8_4:54275742-54275761 | None:intergenic | 40.0% | |
| !!! | GGTAGTTTTGTCTTTAGACG+TGG | - | chr8_4:54275852-54275871 | None:intergenic | 40.0% |
| ! | CAATTAGGGCTTTTCTCCAA+AGG | - | chr8_4:54275874-54275893 | None:intergenic | 40.0% |
| GTTGAGAAGAAATCGTGCAA+AGG | + | chr8_4:54276024-54276043 | Msa1333990:CDS | 40.0% | |
| GTTACCAGGTGGAAAATTCA+TGG | + | chr8_4:54276114-54276133 | Msa1333990:CDS | 40.0% | |
| ! | TCATCCATGAATTTTCCACC+TGG | - | chr8_4:54276121-54276140 | None:intergenic | 40.0% |
| TCGATTAACGAAGAGTTCTG+AGG | - | chr8_4:54276224-54276243 | None:intergenic | 40.0% | |
| TTTGCAAGCTAGAGTTATGG+AGG | + | chr8_4:54276386-54276405 | Msa1333990:three_prime_UTR | 40.0% | |
| TCTCTTCAAGAGTTTGAGCA+AGG | + | chr8_4:54275494-54275513 | Msa1333990:five_prime_UTR | 40.0% | |
| TGCTCAAGCAAGAATTCCTA+AGG | + | chr8_4:54275723-54275742 | Msa1333990:CDS | 40.0% | |
| GACCCTTTATCCATTTCCTT+AGG | - | chr8_4:54275742-54275761 | None:intergenic | 40.0% | |
| !!! | GGTAGTTTTGTCTTTAGACG+TGG | - | chr8_4:54275852-54275871 | None:intergenic | 40.0% |
| ! | CAATTAGGGCTTTTCTCCAA+AGG | - | chr8_4:54275874-54275893 | None:intergenic | 40.0% |
| GTTGAGAAGAAATCGTGCAA+AGG | + | chr8_4:54276024-54276043 | Msa1333990:CDS | 40.0% | |
| GTTACCAGGTGGAAAATTCA+TGG | + | chr8_4:54276114-54276133 | Msa1333990:CDS | 40.0% | |
| ! | TCATCCATGAATTTTCCACC+TGG | - | chr8_4:54276121-54276140 | None:intergenic | 40.0% |
| TCGATTAACGAAGAGTTCTG+AGG | - | chr8_4:54276224-54276243 | None:intergenic | 40.0% | |
| TTTGCAAGCTAGAGTTATGG+AGG | + | chr8_4:54276386-54276405 | Msa1333990:three_prime_UTR | 40.0% | |
| !! | GCTTTCTGCTGATTTAGCCA+TGG | + | chr8_4:54275823-54275842 | Msa1333990:CDS | 45.0% |
| TCGTGCAAAGGAAAGAGTTG+AGG | + | chr8_4:54276036-54276055 | Msa1333990:CDS | 45.0% | |
| !! | AGGCGAGTTTTATAGCGACA+CGG | + | chr8_4:54276056-54276075 | Msa1333990:CDS | 45.0% |
| !! | GAGTTTTATAGCGACACGGT+TGG | + | chr8_4:54276060-54276079 | Msa1333990:CDS | 45.0% |
| !! | AGGCTCAAGAGTTTGTTACC+AGG | + | chr8_4:54276100-54276119 | Msa1333990:CDS | 45.0% |
| !! | CTCAAGAGTTTGTTACCAGG+TGG | + | chr8_4:54276103-54276122 | Msa1333990:CDS | 45.0% |
| GCTAGAGTTATGGAGGAAAG+AGG | + | chr8_4:54276393-54276412 | Msa1333990:three_prime_UTR | 45.0% | |
| !! | GCTTTCTGCTGATTTAGCCA+TGG | + | chr8_4:54275823-54275842 | Msa1333990:CDS | 45.0% |
| TCGTGCAAAGGAAAGAGTTG+AGG | + | chr8_4:54276036-54276055 | Msa1333990:CDS | 45.0% | |
| !! | AGGCGAGTTTTATAGCGACA+CGG | + | chr8_4:54276056-54276075 | Msa1333990:CDS | 45.0% |
| !! | GAGTTTTATAGCGACACGGT+TGG | + | chr8_4:54276060-54276079 | Msa1333990:CDS | 45.0% |
| !! | AGGCTCAAGAGTTTGTTACC+AGG | + | chr8_4:54276100-54276119 | Msa1333990:CDS | 45.0% |
| !! | CTCAAGAGTTTGTTACCAGG+TGG | + | chr8_4:54276103-54276122 | Msa1333990:CDS | 45.0% |
| GCTAGAGTTATGGAGGAAAG+AGG | + | chr8_4:54276393-54276412 | Msa1333990:three_prime_UTR | 45.0% | |
| !! | TATATAAGTATATTAATTTA+CGG | - | chr8_4:54276247-54276266 | None:intergenic | 5.0% |
| !! | TATATAAGTATATTAATTTA+CGG | - | chr8_4:54276247-54276266 | None:intergenic | 5.0% |
| GTCTTTAGACGTGGAAGCCA+TGG | - | chr8_4:54275843-54275862 | None:intergenic | 50.0% | |
| GTCTTTAGACGTGGAAGCCA+TGG | - | chr8_4:54275843-54275862 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 54275405 | 54276449 | 54275405 | ID=Msa1333990;Name=Msa1333990 |
| chr8_4 | mRNA | 54275405 | 54276449 | 54275405 | ID=Msa1333990-mRNA-1;Parent=Msa1333990;Name=Msa1333990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=111|0|0.5|1|0|0.5|2|200|180 |
| chr8_4 | exon | 54275405 | 54275515 | 54275405 | ID=Msa1333990-mRNA-1:exon:16821;Parent=Msa1333990-mRNA-1 |
| chr8_4 | exon | 54275707 | 54276449 | 54275707 | ID=Msa1333990-mRNA-1:exon:16822;Parent=Msa1333990-mRNA-1 |
| chr8_4 | five_prime_UTR | 54275405 | 54275515 | 54275405 | ID=Msa1333990-mRNA-1:five_prime_utr;Parent=Msa1333990-mRNA-1 |
| chr8_4 | CDS | 54275707 | 54276249 | 54275707 | ID=Msa1333990-mRNA-1:cds;Parent=Msa1333990-mRNA-1 |
| chr8_4 | three_prime_UTR | 54276250 | 54276449 | 54276250 | ID=Msa1333990-mRNA-1:three_prime_utr;Parent=Msa1333990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
