Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791740 | XP_013462112.1 | 95.070 | 284 | 13 | 1 | 1 | 284 | 1 | 283 | 3.34e-178 | 502 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791740 | sp|Q3E9B4|OFP8_ARATH | 62.121 | 66 | 25 | 0 | 199 | 264 | 154 | 219 | 7.59e-22 | 94.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791740 | A0A072V2Q5 | 95.070 | 284 | 13 | 1 | 1 | 284 | 1 | 283 | 1.60e-178 | 502 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0791740 | TF | OFP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037760 | Msa0791740 | 0.802976 | 4.345543e-49 | -8.615850e-47 |
| Msa0043740 | Msa0791740 | 0.812957 | 3.264398e-51 | -8.615850e-47 |
| Msa0090090 | Msa0791740 | 0.813833 | 2.094743e-51 | -8.615850e-47 |
| Msa0094710 | Msa0791740 | 0.800357 | 1.497187e-48 | -8.615850e-47 |
| Msa0709140 | Msa0791740 | 0.825154 | 5.470728e-54 | -8.615850e-47 |
| Msa0725580 | Msa0791740 | 0.806002 | 1.016030e-49 | -8.615850e-47 |
| Msa0790920 | Msa0791740 | 0.821259 | 4.441019e-53 | -8.615850e-47 |
| Msa0791740 | Msa0820880 | 0.802602 | 5.190595e-49 | -8.615850e-47 |
| Msa0791740 | Msa0845670 | 0.808392 | 3.167258e-50 | -8.615850e-47 |
| Msa0791740 | Msa1011250 | 0.800482 | 1.411633e-48 | -8.615850e-47 |
| Msa0791740 | Msa1089190 | 0.802929 | 4.442297e-49 | -8.615850e-47 |
| Msa0791740 | Msa1114670 | 0.823746 | 1.173386e-53 | -8.615850e-47 |
| Msa0791740 | Msa1120580 | 0.810383 | 1.184562e-50 | -8.615850e-47 |
| Msa0791740 | Msa1136760 | 0.842851 | 2.008585e-58 | -8.615850e-47 |
| Msa0791740 | Msa1159170 | 0.827204 | 1.779616e-54 | -8.615850e-47 |
| Msa0791740 | Msa1221220 | 0.820020 | 8.550710e-53 | -8.615850e-47 |
| Msa0791740 | Msa1276960 | 0.818858 | 1.574131e-52 | -8.615850e-47 |
| Msa0791740 | Msa1307530 | 0.823941 | 1.056075e-53 | -8.615850e-47 |
| Msa0791740 | Msa1364080 | 0.800987 | 1.113766e-48 | -8.615850e-47 |
| Msa0791740 | Msa1398140 | 0.834346 | 3.160056e-56 | -8.615850e-47 |
| Msa0791740 | Msa1451990 | 0.821375 | 4.174744e-53 | -8.615850e-47 |
| Msa0791740 | Msa1455200 | 0.810827 | 9.496522e-51 | -8.615850e-47 |
| Msa0137560 | Msa0791740 | 0.818440 | 1.958134e-52 | -8.615850e-47 |
| Msa0139680 | Msa0791740 | 0.828448 | 8.939387e-55 | -8.615850e-47 |
| Msa0150620 | Msa0791740 | 0.810474 | 1.131982e-50 | -8.615850e-47 |
| Msa0279660 | Msa0791740 | 0.802243 | 6.153441e-49 | -8.615850e-47 |
| Msa0577660 | Msa0791740 | 0.800467 | 1.421949e-48 | -8.615850e-47 |
| Msa0577750 | Msa0791740 | 0.800840 | 1.193018e-48 | -8.615850e-47 |
| Msa0588710 | Msa0791740 | 0.816333 | 5.836544e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791740 | MtrunA17_Chr3g0141471 | 95.070 | 284 | 13 | 1 | 1 | 284 | 1 | 283 | 0.0 | 502 |
| Msa0791740 | MtrunA17_Chr8g0390531 | 46.988 | 83 | 42 | 1 | 182 | 264 | 243 | 323 | 1.86e-20 | 89.4 |
| Msa0791740 | MtrunA17_Chr1g0177881 | 54.545 | 66 | 30 | 0 | 199 | 264 | 102 | 167 | 9.37e-20 | 84.7 |
| Msa0791740 | MtrunA17_Chr5g0432531 | 58.462 | 65 | 27 | 0 | 199 | 263 | 186 | 250 | 1.13e-19 | 85.9 |
| Msa0791740 | MtrunA17_Chr5g0435131 | 50.725 | 69 | 34 | 0 | 196 | 264 | 88 | 156 | 2.62e-18 | 80.1 |
| Msa0791740 | MtrunA17_Chr7g0267111 | 53.623 | 69 | 32 | 0 | 202 | 270 | 113 | 181 | 4.53e-18 | 80.5 |
| Msa0791740 | MtrunA17_Chr4g0025901 | 46.835 | 79 | 42 | 0 | 186 | 264 | 86 | 164 | 1.43e-17 | 78.6 |
| Msa0791740 | MtrunA17_Chr7g0244571 | 26.829 | 287 | 155 | 8 | 27 | 260 | 58 | 342 | 3.53e-17 | 80.5 |
| Msa0791740 | MtrunA17_Chr8g0379681 | 47.692 | 65 | 34 | 0 | 199 | 263 | 258 | 322 | 5.24e-16 | 77.0 |
| Msa0791740 | MtrunA17_Chr2g0284471 | 46.774 | 62 | 33 | 0 | 199 | 260 | 247 | 308 | 5.61e-16 | 76.6 |
| Msa0791740 | MtrunA17_Chr4g0013081 | 50.820 | 61 | 30 | 0 | 200 | 260 | 315 | 375 | 4.99e-15 | 74.3 |
| Msa0791740 | MtrunA17_Chr4g0025911 | 51.667 | 60 | 29 | 0 | 205 | 264 | 99 | 158 | 1.51e-13 | 67.8 |
| Msa0791740 | MtrunA17_Chr1g0210351 | 45.161 | 62 | 34 | 0 | 198 | 259 | 136 | 197 | 2.84e-11 | 62.4 |
| Msa0791740 | MtrunA17_Chr4g0075391 | 37.500 | 88 | 44 | 1 | 178 | 265 | 71 | 147 | 4.46e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791740 | AT5G19650.1 | 62.121 | 66 | 25 | 0 | 199 | 264 | 154 | 219 | 7.72e-23 | 94.4 |
| Msa0791740 | AT2G18500.1 | 61.538 | 65 | 25 | 0 | 199 | 263 | 226 | 290 | 2.86e-20 | 89.0 |
| Msa0791740 | AT2G30400.1 | 50.000 | 70 | 35 | 0 | 194 | 263 | 247 | 316 | 1.77e-18 | 84.3 |
| Msa0791740 | AT3G52525.1 | 56.452 | 62 | 27 | 0 | 200 | 261 | 67 | 128 | 7.12e-18 | 79.3 |
| Msa0791740 | AT5G58360.1 | 53.731 | 67 | 31 | 0 | 197 | 263 | 222 | 288 | 2.35e-17 | 80.9 |
| Msa0791740 | AT2G36026.1 | 55.000 | 60 | 27 | 0 | 205 | 264 | 92 | 151 | 5.40e-17 | 77.4 |
| Msa0791740 | AT1G06920.1 | 33.010 | 103 | 64 | 1 | 167 | 264 | 206 | 308 | 4.50e-16 | 77.4 |
| Msa0791740 | AT5G01840.1 | 48.529 | 68 | 35 | 0 | 203 | 270 | 202 | 269 | 4.11e-15 | 73.9 |
| Msa0791740 | AT5G22240.1 | 44.118 | 68 | 38 | 0 | 196 | 263 | 93 | 160 | 1.23e-13 | 68.6 |
| Msa0791740 | AT4G18830.1 | 45.902 | 61 | 33 | 0 | 199 | 259 | 282 | 342 | 8.33e-12 | 65.1 |
Find 69 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGCAGGGCCTGGATTCC+CGG | 0.272464 | 5_3:+2804231 | None:intergenic |
| CTCAAATTATAGTGATAAAA+AGG | 0.274257 | 5_3:-2803927 | Msa0791740:CDS |
| GACACATTGCATTGGTGTTC+CGG | 0.301179 | 5_3:+2804142 | None:intergenic |
| GGTCCATTCTTCTAGTACTA+TGG | 0.311039 | 5_3:-2803972 | Msa0791740:CDS |
| TGCGAGCTTTCATGGAGATT+TGG | 0.332540 | 5_3:-2803550 | Msa0791740:CDS |
| AGTAATTGTGCGAGCTTTCA+TGG | 0.344864 | 5_3:-2803558 | Msa0791740:CDS |
| ACACATTGCATTGGTGTTCC+GGG | 0.358060 | 5_3:+2804143 | None:intergenic |
| CACCGGAGAAAGACGGTATA+TGG | 0.359937 | 5_3:+2804213 | None:intergenic |
| TCCTCTTTCCCCGGGAATCC+AGG | 0.367021 | 5_3:-2804241 | Msa0791740:CDS |
| TTTGGCAACAAATGTTCGTT+TGG | 0.381425 | 5_3:-2803532 | Msa0791740:CDS |
| TTATCACTATAATTTGAGAT+AGG | 0.385663 | 5_3:+2803932 | None:intergenic |
| ATACCCTATGTCATATGCTT+TGG | 0.387292 | 5_3:+2804186 | None:intergenic |
| GGTAAAAGAAAGCTTTGCTT+TGG | 0.392617 | 5_3:-2803720 | Msa0791740:CDS |
| GGGGACGAAGCAGGAAGGTT+TGG | 0.401354 | 5_3:+2804163 | None:intergenic |
| AGTGAGGTTTCAAAGTATTA+CGG | 0.405418 | 5_3:-2803843 | Msa0791740:CDS |
| ATTTAACTAGCTCGAATAGA+AGG | 0.424510 | 5_3:-2803895 | Msa0791740:CDS |
| AATGACCTTTCCTCTTTCCC+CGG | 0.427656 | 5_3:-2804250 | Msa0791740:CDS |
| ACTTGACATAACCTTCGTTT+CGG | 0.428668 | 5_3:+2803757 | None:intergenic |
| GATGTCCGAGGCCAAGGACT+TGG | 0.437700 | 5_3:-2803630 | Msa0791740:CDS |
| ATGGCAGGGCCTGGATTCCC+GGG | 0.439698 | 5_3:+2804232 | None:intergenic |
| GTTAGAGATGATAGAAGAGA+TGG | 0.441612 | 5_3:-2803654 | Msa0791740:CDS |
| TTCTTGCTTAGCAAGATTCT+CGG | 0.449560 | 5_3:-2804005 | Msa0791740:CDS |
| GAAGGTTATGTCAAGTAGAA+TGG | 0.463702 | 5_3:-2803750 | Msa0791740:CDS |
| GAAGGTTATGTCAAGTAGAA+TGG | 0.463702 | 5_3:-2803798 | Msa0791740:CDS |
| CTATGGATAGTACTAAAGTT+AGG | 0.470027 | 5_3:-2803955 | Msa0791740:CDS |
| TGAAGAAGGTTGAGAGAGTG+AGG | 0.472397 | 5_3:-2803859 | Msa0791740:CDS |
| CAATAGTTGCTCCAAGTCCT+TGG | 0.478606 | 5_3:+2803619 | None:intergenic |
| TCAAACAAATGTTCAAACTA+AGG | 0.481359 | 5_3:-2803486 | Msa0791740:CDS |
| GGGGAAAGAGGAAAGGTCAT+TGG | 0.484366 | 5_3:+2804252 | None:intergenic |
| AGACGGTATATGGCAGGGCC+TGG | 0.484707 | 5_3:+2804223 | None:intergenic |
| ACTAGAAGAATGGACCTTCT+CGG | 0.488884 | 5_3:+2803979 | None:intergenic |
| GCCTGGATTCCCGGGGAAAG+AGG | 0.494617 | 5_3:+2804240 | None:intergenic |
| TATCCATAGTACTAGAAGAA+TGG | 0.495158 | 5_3:+2803969 | None:intergenic |
| AGAAACTCACTTCTTCTTGA+GGG | 0.501729 | 5_3:+2804067 | None:intergenic |
| GACGATAAGTCGTGTGAAGA+AGG | 0.503045 | 5_3:-2803873 | Msa0791740:CDS |
| GATGGAGATGTCCGAGGCCA+AGG | 0.503048 | 5_3:-2803636 | Msa0791740:CDS |
| TGCCATATACCGTCTTTCTC+CGG | 0.503136 | 5_3:-2804215 | Msa0791740:CDS |
| GAGCGACACATTTGAAAAGA+AGG | 0.503682 | 5_3:+2804274 | None:intergenic |
| TGGTGTTCCGGGGACGAAGC+AGG | 0.504342 | 5_3:+2804154 | None:intergenic |
| AAACCTTCCTGCTTCGTCCC+CGG | 0.507845 | 5_3:-2804161 | Msa0791740:CDS |
| GTCAAGTAGAATGGAGGAGA+AGG | 0.514162 | 5_3:-2803741 | Msa0791740:CDS |
| TTGCTCCAAGTCCTTGGCCT+CGG | 0.515968 | 5_3:+2803625 | None:intergenic |
| AGCGACACATTTGAAAAGAA+GGG | 0.522344 | 5_3:+2804275 | None:intergenic |
| ATGACCTTTCCTCTTTCCCC+GGG | 0.522963 | 5_3:-2804249 | Msa0791740:CDS |
| GGAGAAAGACGGTATATGGC+AGG | 0.531009 | 5_3:+2804217 | None:intergenic |
| TAGAAACTCACTTCTTCTTG+AGG | 0.531127 | 5_3:+2804066 | None:intergenic |
| TCATATGCTTTGGAGTTCAC+CGG | 0.541099 | 5_3:+2804196 | None:intergenic |
| CTAAATTCTAGAGATTATCA+TGG | 0.544872 | 5_3:-2803581 | Msa0791740:CDS |
| GATTTCTTGAAGTCTTCGTA+AGG | 0.562850 | 5_3:+2803680 | None:intergenic |
| AATTGATAAAATCAATGAAG+AGG | 0.573253 | 5_3:-2804044 | Msa0791740:CDS |
| AAGATTCTCGGAAGCCGAGA+AGG | 0.578226 | 5_3:-2803993 | Msa0791740:CDS |
| AACTCCAAAGCATATGACAT+AGG | 0.582440 | 5_3:-2804190 | Msa0791740:CDS |
| CACATTGCATTGGTGTTCCG+GGG | 0.597632 | 5_3:+2804144 | None:intergenic |
| TCTTCTTGAGGGAACGTCGG+AGG | 0.601171 | 5_3:+2804078 | None:intergenic |
| ACTCCAAAGCATATGACATA+GGG | 0.601832 | 5_3:-2804189 | Msa0791740:CDS |
| TCGAAGAGGAACCGAAACGA+AGG | 0.602284 | 5_3:-2803768 | Msa0791740:CDS |
| ATTAAGAAAGTGAAATCCAA+AGG | 0.608408 | 5_3:-2804112 | Msa0791740:CDS |
| TGGAGTTCACCGGAGAAAGA+CGG | 0.608559 | 5_3:+2804206 | None:intergenic |
| TCTTTGATGACACATTGCAT+TGG | 0.617252 | 5_3:+2804134 | None:intergenic |
| GATTCCCGGGGAAAGAGGAA+AGG | 0.637825 | 5_3:+2804245 | None:intergenic |
| GTTCCGGGGACGAAGCAGGA+AGG | 0.638288 | 5_3:+2804158 | None:intergenic |
| GAGAAAGACGGTATATGGCA+GGG | 0.639308 | 5_3:+2804218 | None:intergenic |
| ACTTCTTCTTGAGGGAACGT+CGG | 0.649804 | 5_3:+2804075 | None:intergenic |
| AGTATTACGGAGAATCAAAG+AGG | 0.650942 | 5_3:-2803830 | Msa0791740:CDS |
| TGGCAGGGCCTGGATTCCCG+GGG | 0.653477 | 5_3:+2804233 | None:intergenic |
| GGTTATGTCAAGTAGAATGG+AGG | 0.656874 | 5_3:-2803747 | Msa0791740:CDS |
| AGAATGGAAGAGAATCGAAG+AGG | 0.657497 | 5_3:-2803782 | Msa0791740:CDS |
| TCAAAGAGGAAAAGAAACGA+AGG | 0.672215 | 5_3:-2803816 | Msa0791740:CDS |
| AGAAGAGATGGAGATGTCCG+AGG | 0.675634 | 5_3:-2803642 | Msa0791740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGATAAAATCAATGAAG+AGG | - | chr5_3:2803735-2803754 | Msa0791740:CDS | 20.0% |
| !!! | TTATCACTATAATTTGAGAT+AGG | + | chr5_3:2803850-2803869 | None:intergenic | 20.0% |
| !! | CTCAAATTATAGTGATAAAA+AGG | - | chr5_3:2803852-2803871 | Msa0791740:CDS | 20.0% |
| !! | AATTGATAAAATCAATGAAG+AGG | - | chr5_3:2803735-2803754 | Msa0791740:CDS | 20.0% |
| !!! | TTATCACTATAATTTGAGAT+AGG | + | chr5_3:2803850-2803869 | None:intergenic | 20.0% |
| !! | CTCAAATTATAGTGATAAAA+AGG | - | chr5_3:2803852-2803871 | Msa0791740:CDS | 20.0% |
| ! | ATTAAGAAAGTGAAATCCAA+AGG | - | chr5_3:2803667-2803686 | Msa0791740:CDS | 25.0% |
| !! | CTAAATTCTAGAGATTATCA+TGG | - | chr5_3:2804198-2804217 | Msa0791740:CDS | 25.0% |
| !!! | TGAAGATTTTTTACTGACTT+AGG | + | chr5_3:2804276-2804295 | None:intergenic | 25.0% |
| ! | TCAAACAAATGTTCAAACTA+AGG | - | chr5_3:2804293-2804312 | Msa0791740:CDS | 25.0% |
| ! | ATTAAGAAAGTGAAATCCAA+AGG | - | chr5_3:2803667-2803686 | Msa0791740:CDS | 25.0% |
| !! | CTAAATTCTAGAGATTATCA+TGG | - | chr5_3:2804198-2804217 | Msa0791740:CDS | 25.0% |
| !!! | TGAAGATTTTTTACTGACTT+AGG | + | chr5_3:2804276-2804295 | None:intergenic | 25.0% |
| ! | TCAAACAAATGTTCAAACTA+AGG | - | chr5_3:2804293-2804312 | Msa0791740:CDS | 25.0% |
| TATCCATAGTACTAGAAGAA+TGG | + | chr5_3:2803813-2803832 | None:intergenic | 30.0% | |
| CTATGGATAGTACTAAAGTT+AGG | - | chr5_3:2803824-2803843 | Msa0791740:CDS | 30.0% | |
| ATTTAACTAGCTCGAATAGA+AGG | - | chr5_3:2803884-2803903 | Msa0791740:CDS | 30.0% | |
| ! | AGTGAGGTTTCAAAGTATTA+CGG | - | chr5_3:2803936-2803955 | Msa0791740:CDS | 30.0% |
| TATCCATAGTACTAGAAGAA+TGG | + | chr5_3:2803813-2803832 | None:intergenic | 30.0% | |
| CTATGGATAGTACTAAAGTT+AGG | - | chr5_3:2803824-2803843 | Msa0791740:CDS | 30.0% | |
| ATTTAACTAGCTCGAATAGA+AGG | - | chr5_3:2803884-2803903 | Msa0791740:CDS | 30.0% | |
| ! | AGTGAGGTTTCAAAGTATTA+CGG | - | chr5_3:2803936-2803955 | Msa0791740:CDS | 30.0% |
| AGCGACACATTTGAAAAGAA+GGG | + | chr5_3:2803507-2803526 | None:intergenic | 35.0% | |
| AACTCCAAAGCATATGACAT+AGG | - | chr5_3:2803589-2803608 | Msa0791740:CDS | 35.0% | |
| ACTCCAAAGCATATGACATA+GGG | - | chr5_3:2803590-2803609 | Msa0791740:CDS | 35.0% | |
| ATACCCTATGTCATATGCTT+TGG | + | chr5_3:2803596-2803615 | None:intergenic | 35.0% | |
| ! | TCTTTGATGACACATTGCAT+TGG | + | chr5_3:2803648-2803667 | None:intergenic | 35.0% |
| AGAAACTCACTTCTTCTTGA+GGG | + | chr5_3:2803715-2803734 | None:intergenic | 35.0% | |
| TAGAAACTCACTTCTTCTTG+AGG | + | chr5_3:2803716-2803735 | None:intergenic | 35.0% | |
| TTCTTGCTTAGCAAGATTCT+CGG | - | chr5_3:2803774-2803793 | Msa0791740:CDS | 35.0% | |
| AGTATTACGGAGAATCAAAG+AGG | - | chr5_3:2803949-2803968 | Msa0791740:CDS | 35.0% | |
| TCAAAGAGGAAAAGAAACGA+AGG | - | chr5_3:2803963-2803982 | Msa0791740:CDS | 35.0% | |
| GAAGGTTATGTCAAGTAGAA+TGG | - | chr5_3:2803981-2804000 | Msa0791740:CDS | 35.0% | |
| ACTTGACATAACCTTCGTTT+CGG | + | chr5_3:2803977-2803996 | None:intergenic | 35.0% | |
| GAAGGTTATGTCAAGTAGAA+TGG | - | chr5_3:2803981-2804000 | Msa0791740:CDS | 35.0% | |
| GGTAAAAGAAAGCTTTGCTT+TGG | - | chr5_3:2804059-2804078 | Msa0791740:CDS | 35.0% | |
| TGCTTTGGTGAAAAAGTCAA+AGG | - | chr5_3:2804074-2804093 | Msa0791740:CDS | 35.0% | |
| GATTTCTTGAAGTCTTCGTA+AGG | + | chr5_3:2804102-2804121 | None:intergenic | 35.0% | |
| GTTAGAGATGATAGAAGAGA+TGG | - | chr5_3:2804125-2804144 | Msa0791740:CDS | 35.0% | |
| !!! | GCAACTATTGCAGTGTTTTT+TGG | - | chr5_3:2804173-2804192 | Msa0791740:CDS | 35.0% |
| TTTGGCAACAAATGTTCGTT+TGG | - | chr5_3:2804247-2804266 | Msa0791740:CDS | 35.0% | |
| AGCGACACATTTGAAAAGAA+GGG | + | chr5_3:2803507-2803526 | None:intergenic | 35.0% | |
| AACTCCAAAGCATATGACAT+AGG | - | chr5_3:2803589-2803608 | Msa0791740:CDS | 35.0% | |
| ACTCCAAAGCATATGACATA+GGG | - | chr5_3:2803590-2803609 | Msa0791740:CDS | 35.0% | |
| ATACCCTATGTCATATGCTT+TGG | + | chr5_3:2803596-2803615 | None:intergenic | 35.0% | |
| ! | TCTTTGATGACACATTGCAT+TGG | + | chr5_3:2803648-2803667 | None:intergenic | 35.0% |
| AGAAACTCACTTCTTCTTGA+GGG | + | chr5_3:2803715-2803734 | None:intergenic | 35.0% | |
| TAGAAACTCACTTCTTCTTG+AGG | + | chr5_3:2803716-2803735 | None:intergenic | 35.0% | |
| TTCTTGCTTAGCAAGATTCT+CGG | - | chr5_3:2803774-2803793 | Msa0791740:CDS | 35.0% | |
| AGTATTACGGAGAATCAAAG+AGG | - | chr5_3:2803949-2803968 | Msa0791740:CDS | 35.0% | |
| TCAAAGAGGAAAAGAAACGA+AGG | - | chr5_3:2803963-2803982 | Msa0791740:CDS | 35.0% | |
| GAAGGTTATGTCAAGTAGAA+TGG | - | chr5_3:2803981-2804000 | Msa0791740:CDS | 35.0% | |
| ACTTGACATAACCTTCGTTT+CGG | + | chr5_3:2803977-2803996 | None:intergenic | 35.0% | |
| GAAGGTTATGTCAAGTAGAA+TGG | - | chr5_3:2803981-2804000 | Msa0791740:CDS | 35.0% | |
| GGTAAAAGAAAGCTTTGCTT+TGG | - | chr5_3:2804059-2804078 | Msa0791740:CDS | 35.0% | |
| TGCTTTGGTGAAAAAGTCAA+AGG | - | chr5_3:2804074-2804093 | Msa0791740:CDS | 35.0% | |
| GATTTCTTGAAGTCTTCGTA+AGG | + | chr5_3:2804102-2804121 | None:intergenic | 35.0% | |
| GTTAGAGATGATAGAAGAGA+TGG | - | chr5_3:2804125-2804144 | Msa0791740:CDS | 35.0% | |
| !!! | GCAACTATTGCAGTGTTTTT+TGG | - | chr5_3:2804173-2804192 | Msa0791740:CDS | 35.0% |
| TTTGGCAACAAATGTTCGTT+TGG | - | chr5_3:2804247-2804266 | Msa0791740:CDS | 35.0% | |
| GAGCGACACATTTGAAAAGA+AGG | + | chr5_3:2803508-2803527 | None:intergenic | 40.0% | |
| !! | TCATATGCTTTGGAGTTCAC+CGG | + | chr5_3:2803586-2803605 | None:intergenic | 40.0% |
| ACTAGAAGAATGGACCTTCT+CGG | + | chr5_3:2803803-2803822 | None:intergenic | 40.0% | |
| GGTCCATTCTTCTAGTACTA+TGG | - | chr5_3:2803807-2803826 | Msa0791740:CDS | 40.0% | |
| AGAATGGAAGAGAATCGAAG+AGG | - | chr5_3:2803997-2804016 | Msa0791740:CDS | 40.0% | |
| GGTTATGTCAAGTAGAATGG+AGG | - | chr5_3:2803984-2804003 | Msa0791740:CDS | 40.0% | |
| AGTAATTGTGCGAGCTTTCA+TGG | - | chr5_3:2804221-2804240 | Msa0791740:CDS | 40.0% | |
| GAGCGACACATTTGAAAAGA+AGG | + | chr5_3:2803508-2803527 | None:intergenic | 40.0% | |
| !! | TCATATGCTTTGGAGTTCAC+CGG | + | chr5_3:2803586-2803605 | None:intergenic | 40.0% |
| ACTAGAAGAATGGACCTTCT+CGG | + | chr5_3:2803803-2803822 | None:intergenic | 40.0% | |
| GGTCCATTCTTCTAGTACTA+TGG | - | chr5_3:2803807-2803826 | Msa0791740:CDS | 40.0% | |
| AGAATGGAAGAGAATCGAAG+AGG | - | chr5_3:2803997-2804016 | Msa0791740:CDS | 40.0% | |
| GGTTATGTCAAGTAGAATGG+AGG | - | chr5_3:2803984-2804003 | Msa0791740:CDS | 40.0% | |
| AGTAATTGTGCGAGCTTTCA+TGG | - | chr5_3:2804221-2804240 | Msa0791740:CDS | 40.0% | |
| AATGACCTTTCCTCTTTCCC+CGG | - | chr5_3:2803529-2803548 | Msa0791740:CDS | 45.0% | |
| GAGAAAGACGGTATATGGCA+GGG | + | chr5_3:2803564-2803583 | None:intergenic | 45.0% | |
| TGCCATATACCGTCTTTCTC+CGG | - | chr5_3:2803564-2803583 | Msa0791740:CDS | 45.0% | |
| ! | ACACATTGCATTGGTGTTCC+GGG | + | chr5_3:2803639-2803658 | None:intergenic | 45.0% |
| ! | GACACATTGCATTGGTGTTC+CGG | + | chr5_3:2803640-2803659 | None:intergenic | 45.0% |
| ACTTCTTCTTGAGGGAACGT+CGG | + | chr5_3:2803707-2803726 | None:intergenic | 45.0% | |
| GACGATAAGTCGTGTGAAGA+AGG | - | chr5_3:2803906-2803925 | Msa0791740:CDS | 45.0% | |
| TGAAGAAGGTTGAGAGAGTG+AGG | - | chr5_3:2803920-2803939 | Msa0791740:CDS | 45.0% | |
| GTCAAGTAGAATGGAGGAGA+AGG | - | chr5_3:2804038-2804057 | Msa0791740:CDS | 45.0% | |
| CAATAGTTGCTCCAAGTCCT+TGG | + | chr5_3:2804163-2804182 | None:intergenic | 45.0% | |
| TGCGAGCTTTCATGGAGATT+TGG | - | chr5_3:2804229-2804248 | Msa0791740:CDS | 45.0% | |
| AATGACCTTTCCTCTTTCCC+CGG | - | chr5_3:2803529-2803548 | Msa0791740:CDS | 45.0% | |
| GAGAAAGACGGTATATGGCA+GGG | + | chr5_3:2803564-2803583 | None:intergenic | 45.0% | |
| TGCCATATACCGTCTTTCTC+CGG | - | chr5_3:2803564-2803583 | Msa0791740:CDS | 45.0% | |
| ! | ACACATTGCATTGGTGTTCC+GGG | + | chr5_3:2803639-2803658 | None:intergenic | 45.0% |
| ! | GACACATTGCATTGGTGTTC+CGG | + | chr5_3:2803640-2803659 | None:intergenic | 45.0% |
| ACTTCTTCTTGAGGGAACGT+CGG | + | chr5_3:2803707-2803726 | None:intergenic | 45.0% | |
| GACGATAAGTCGTGTGAAGA+AGG | - | chr5_3:2803906-2803925 | Msa0791740:CDS | 45.0% | |
| TGAAGAAGGTTGAGAGAGTG+AGG | - | chr5_3:2803920-2803939 | Msa0791740:CDS | 45.0% | |
| GTCAAGTAGAATGGAGGAGA+AGG | - | chr5_3:2804038-2804057 | Msa0791740:CDS | 45.0% | |
| CAATAGTTGCTCCAAGTCCT+TGG | + | chr5_3:2804163-2804182 | None:intergenic | 45.0% | |
| TGCGAGCTTTCATGGAGATT+TGG | - | chr5_3:2804229-2804248 | Msa0791740:CDS | 45.0% | |
| GGGGAAAGAGGAAAGGTCAT+TGG | + | chr5_3:2803530-2803549 | None:intergenic | 50.0% | |
| ATGACCTTTCCTCTTTCCCC+GGG | - | chr5_3:2803530-2803549 | Msa0791740:CDS | 50.0% | |
| GGAGAAAGACGGTATATGGC+AGG | + | chr5_3:2803565-2803584 | None:intergenic | 50.0% | |
| CACCGGAGAAAGACGGTATA+TGG | + | chr5_3:2803569-2803588 | None:intergenic | 50.0% | |
| TGGAGTTCACCGGAGAAAGA+CGG | + | chr5_3:2803576-2803595 | None:intergenic | 50.0% | |
| ! | CACATTGCATTGGTGTTCCG+GGG | + | chr5_3:2803638-2803657 | None:intergenic | 50.0% |
| AAGATTCTCGGAAGCCGAGA+AGG | - | chr5_3:2803786-2803805 | Msa0791740:CDS | 50.0% | |
| TCGAAGAGGAACCGAAACGA+AGG | - | chr5_3:2804011-2804030 | Msa0791740:CDS | 50.0% | |
| AGAAGAGATGGAGATGTCCG+AGG | - | chr5_3:2804137-2804156 | Msa0791740:CDS | 50.0% | |
| GGGGAAAGAGGAAAGGTCAT+TGG | + | chr5_3:2803530-2803549 | None:intergenic | 50.0% | |
| ATGACCTTTCCTCTTTCCCC+GGG | - | chr5_3:2803530-2803549 | Msa0791740:CDS | 50.0% | |
| GGAGAAAGACGGTATATGGC+AGG | + | chr5_3:2803565-2803584 | None:intergenic | 50.0% | |
| CACCGGAGAAAGACGGTATA+TGG | + | chr5_3:2803569-2803588 | None:intergenic | 50.0% | |
| TGGAGTTCACCGGAGAAAGA+CGG | + | chr5_3:2803576-2803595 | None:intergenic | 50.0% | |
| ! | CACATTGCATTGGTGTTCCG+GGG | + | chr5_3:2803638-2803657 | None:intergenic | 50.0% |
| AAGATTCTCGGAAGCCGAGA+AGG | - | chr5_3:2803786-2803805 | Msa0791740:CDS | 50.0% | |
| TCGAAGAGGAACCGAAACGA+AGG | - | chr5_3:2804011-2804030 | Msa0791740:CDS | 50.0% | |
| AGAAGAGATGGAGATGTCCG+AGG | - | chr5_3:2804137-2804156 | Msa0791740:CDS | 50.0% | |
| GATTCCCGGGGAAAGAGGAA+AGG | + | chr5_3:2803537-2803556 | None:intergenic | 55.0% | |
| AAACCTTCCTGCTTCGTCCC+CGG | - | chr5_3:2803618-2803637 | Msa0791740:CDS | 55.0% | |
| !!! | GAACGTCGGAGGTGCTTTTG+CGG | + | chr5_3:2803693-2803712 | None:intergenic | 55.0% |
| TCTTCTTGAGGGAACGTCGG+AGG | + | chr5_3:2803704-2803723 | None:intergenic | 55.0% | |
| TTGCTCCAAGTCCTTGGCCT+CGG | + | chr5_3:2804157-2804176 | None:intergenic | 55.0% | |
| GATTCCCGGGGAAAGAGGAA+AGG | + | chr5_3:2803537-2803556 | None:intergenic | 55.0% | |
| AAACCTTCCTGCTTCGTCCC+CGG | - | chr5_3:2803618-2803637 | Msa0791740:CDS | 55.0% | |
| !!! | GAACGTCGGAGGTGCTTTTG+CGG | + | chr5_3:2803693-2803712 | None:intergenic | 55.0% |
| TCTTCTTGAGGGAACGTCGG+AGG | + | chr5_3:2803704-2803723 | None:intergenic | 55.0% | |
| TTGCTCCAAGTCCTTGGCCT+CGG | + | chr5_3:2804157-2804176 | None:intergenic | 55.0% | |
| TCCTCTTTCCCCGGGAATCC+AGG | - | chr5_3:2803538-2803557 | Msa0791740:CDS | 60.0% | |
| TATGGCAGGGCCTGGATTCC+CGG | + | chr5_3:2803551-2803570 | None:intergenic | 60.0% | |
| AGACGGTATATGGCAGGGCC+TGG | + | chr5_3:2803559-2803578 | None:intergenic | 60.0% | |
| GGGGACGAAGCAGGAAGGTT+TGG | + | chr5_3:2803619-2803638 | None:intergenic | 60.0% | |
| !!! | GGAGGTGCTTTTGCGGCCTT+TGG | + | chr5_3:2803686-2803705 | None:intergenic | 60.0% |
| GATGGAGATGTCCGAGGCCA+AGG | - | chr5_3:2804143-2804162 | Msa0791740:CDS | 60.0% | |
| GATGTCCGAGGCCAAGGACT+TGG | - | chr5_3:2804149-2804168 | Msa0791740:CDS | 60.0% | |
| TCCTCTTTCCCCGGGAATCC+AGG | - | chr5_3:2803538-2803557 | Msa0791740:CDS | 60.0% | |
| TATGGCAGGGCCTGGATTCC+CGG | + | chr5_3:2803551-2803570 | None:intergenic | 60.0% | |
| AGACGGTATATGGCAGGGCC+TGG | + | chr5_3:2803559-2803578 | None:intergenic | 60.0% | |
| GGGGACGAAGCAGGAAGGTT+TGG | + | chr5_3:2803619-2803638 | None:intergenic | 60.0% | |
| !!! | GGAGGTGCTTTTGCGGCCTT+TGG | + | chr5_3:2803686-2803705 | None:intergenic | 60.0% |
| GATGGAGATGTCCGAGGCCA+AGG | - | chr5_3:2804143-2804162 | Msa0791740:CDS | 60.0% | |
| GATGTCCGAGGCCAAGGACT+TGG | - | chr5_3:2804149-2804168 | Msa0791740:CDS | 60.0% | |
| GCCTGGATTCCCGGGGAAAG+AGG | + | chr5_3:2803542-2803561 | None:intergenic | 65.0% | |
| ATGGCAGGGCCTGGATTCCC+GGG | + | chr5_3:2803550-2803569 | None:intergenic | 65.0% | |
| GTTCCGGGGACGAAGCAGGA+AGG | + | chr5_3:2803624-2803643 | None:intergenic | 65.0% | |
| TGGTGTTCCGGGGACGAAGC+AGG | + | chr5_3:2803628-2803647 | None:intergenic | 65.0% | |
| GCCTGGATTCCCGGGGAAAG+AGG | + | chr5_3:2803542-2803561 | None:intergenic | 65.0% | |
| ATGGCAGGGCCTGGATTCCC+GGG | + | chr5_3:2803550-2803569 | None:intergenic | 65.0% | |
| GTTCCGGGGACGAAGCAGGA+AGG | + | chr5_3:2803624-2803643 | None:intergenic | 65.0% | |
| TGGTGTTCCGGGGACGAAGC+AGG | + | chr5_3:2803628-2803647 | None:intergenic | 65.0% | |
| TGGCAGGGCCTGGATTCCCG+GGG | + | chr5_3:2803549-2803568 | None:intergenic | 70.0% | |
| TGGCAGGGCCTGGATTCCCG+GGG | + | chr5_3:2803549-2803568 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 2803472 | 2804329 | 2803472 | ID=Msa0791740;Name=Msa0791740 |
| chr5_3 | mRNA | 2803472 | 2804329 | 2803472 | ID=Msa0791740-mRNA-1;Parent=Msa0791740;Name=Msa0791740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|285 |
| chr5_3 | exon | 2803472 | 2804329 | 2803472 | ID=Msa0791740-mRNA-1:exon:1201;Parent=Msa0791740-mRNA-1 |
| chr5_3 | CDS | 2803472 | 2804329 | 2803472 | ID=Msa0791740-mRNA-1:cds;Parent=Msa0791740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
